The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
55
|
sequence length |
175
|
structure length |
175
|
Chain Sequence |
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
pubmed doi rcsb |
| molecule tags |
Rna binding protein
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
KRR1 small subunit processome component
|
| total genus |
55
|
| structure length |
175
|
| sequence length |
175
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2014-06-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF17903 | KH_8 | Krr1 KH1 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | K Homology domain, type 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | K Homology domain, type 1 |
#chains in the Genus database with same CATH superfamily 2Z0S A; 4AM3 A; 2FMR A; 5JEA G; 1WVN A; 3V69 A; 5C0X G; 1KHM A; 2OPV A; 1WE8 A; 1J5K A; 4BA1 I; 1VIH A; 2JEA I; 4BA2 I; 2CTL A; 4OO1 G; 1J4W A; 4JVY A; 3L7Z C; 2DGR A; 4IFD G; 2E3U A; 4LIJ A; 1X4M A; 1K1G A; 1DT4 A; 2CTJ A; 3U1K A; 2BA0 A; 2JZX A; 2HH3 A; 1X4N A; 2CTF A; 2NN6 G; 4NBQ A; 1ZZJ A; 2OPU A; 1ZTG A; 4B8T A; 2MJH A; 2ANN A; 2BL5 A; 1ZZK A; 1DTJ A; 1VIG A; 2ANR A; 4WAN A; 4QMF B; 2CTM A; 2JEB I; 2QND A; 2PQU A; 2JVZ A; 4JVH A; 4WAL A; 2JA9 A; 3VKE A; 2PY9 A; 1TUA A; 1EC6 A; 2CPQ A; 2AXY A; 2P2R A; 4AIM A; 2YQR A; 5K36 G; 2CTK A; 1ZZI A; 2CTE A; 2HH2 A; 3AEV B; 2JE6 I; #chains in the Genus database with same CATH topology 4K0K H; 4B8C D; 2UXD H; 4LFA H; 3I0P A; 5C0X G; 2OPV A; 1S20 A; 1HNX H; 1J5K A; 2JEA I; 1NXU A; 4DV3 H; 4DV6 H; 4IFD G; 2UU9 H; 1J5E H; 4YY3 H; 4NXN H; 4LFB H; 2PT7 G; 2O4C A; 2CTF A; 2LTL A; 4NBQ A; 4JI8 H; 2UXB H; 2BL5 A; 1ZZK A; 4FJU A; 2UXC H; 1VIG A; 1HNZ H; 4WAN A; 2CTM A; 3FAU A; 1S03 G; 2JEB I; 2VKC A; 2G8Y A; 4LFC H; 3GR5 A; 3J80 W; 1XNR H; 3JAM W; 4LF5 H; 3UOE A; 4DR7 H; 4DR1 H; 1FJG H; 1V9N A; 4JI1 H; 3QD7 X; 4B3R H; 2M8W A; 3GAB A; 4KHP H; 4YHH H; 3OTO H; 3AEV B; 2Z0S A; 4AM3 A; 3KDG A; 3GKU A; 1WE8 A; 4EC5 A; 5DT9 A; 4OX9 H; 1VIH A; 1IBK H; 4OO1 G; 2CTL A; 4JVY A; 4DUY H; 4PDB A; 2E3U A; 2K1H A; 1V8C A; 4X65 H; 2VQE H; 4DR2 H; 1ODH A; 1K1G A; 1HNW H; 1XRH A; 1AN7 A; 4DV2 H; 4DUZ H; 1N34 H; 4DV1 H; 2ZM6 H; 1IBM H; 1F0X A; 3OET A; 5LL6 b; 2NN6 G; 1ZZJ A; 1ZTG A; 4JV5 H; 2F4V H; 4AQY H; 3J81 W; 3KDK A; 1DTJ A; 4NZT M; 2ANR A; 4B3M H; 1XMO H; 2CWH A; 4DV4 H; 2VQF H; 4GKK H; 5FLX W; 4WAL A; 3VKE A; 5BR8 H; 2AXY A; 4JI0 H; 3T1H H; 4LF8 H; 1XNQ H; 1WTJ A; 2YQR A; 3T1Y H; 4B3T H; 2HH2 A; 2JE6 I; 4JI4 H; 4DV7 H; 5JEA G; 3V69 A; 1KHM A; 2A1S A; 2X06 A; 2ZQE A; 3RF2 A; 4H8A A; 1J4W A; 3L7Z C; 1I94 H; 2HHH H; 1X4M A; 1DT4 A; 4GKJ H; 2M6Q A; 2CTJ A; 4NXM H; 3U1K A; 4G08 A; 2BA0 A; 2CWF A; 2JZX A; 4B3S H; 1X4N A; 3NCV A; 4JI6 H; 1N32 H; 4DR5 H; 1VBI A; 5LMU H; 2MJH A; 2ANN A; 4DR4 H; 4B8T A; 4DR6 H; 2LRR A; 2D9I A; 2LF0 A; 4JI2 H; 4QMF B; 2UUA H; 4LF6 H; 2PQU A; 2JVZ A; 4JVH A; 1N33 H; 1EC6 A; 4OD6 A; 1MSZ A; 1HR0 H; 2Y3M A; 3EZJ A; 4X62 H; 1IBL H; 1Z2I A; 5A2Q W; 2UUC H; 1WHR A; 3J7A K; 4DR3 H; 4DV5 H; 2FMR A; 1WVN A; 5IWA H; 4LF9 H; 1XMQ H; 2FPH X; 3SB1 A; 4BA1 I; 4E9J A; 2E5L H; 4BA2 I; 4JYA H; 3OSS D; 2DGR A; 4LIJ A; 1X0A A; 4DV0 H; 1X9Z A; 2HH3 A; 2UUB H; 4OCH A; 4JI3 H; 1UG8 A; 4X66 H; 2OPU A; 4LF4 H; 1SEI A; 2FFM A; 1I6U A; 4JI5 H; 1PQX A; 2LTM A; 1FKA H; 2QND A; 5LMN H; 2JA9 A; 2PY9 A; 1TUA A; 4LF7 H; 4JI7 H; 2CPM A; 2CPQ A; 4NZR M; 2P2R A; 4AIM A; 4X64 H; 1N36 H; 5K36 G; 2CTK A; 1ZZI A; 5IT9 W; 2CTE A; 4FJS A; #chains in the Genus database with same CATH homology 2Z0S A; 4AM3 A; 2FMR A; 5JEA G; 1WVN A; 3V69 A; 5C0X G; 1KHM A; 2OPV A; 1WE8 A; 1J5K A; 4BA1 I; 1VIH A; 2JEA I; 4BA2 I; 2CTL A; 4OO1 G; 1J4W A; 4JVY A; 3L7Z C; 2DGR A; 4IFD G; 2E3U A; 4LIJ A; 1X4M A; 1K1G A; 1DT4 A; 2CTJ A; 3U1K A; 2BA0 A; 2JZX A; 2HH3 A; 1X4N A; 2CTF A; 2NN6 G; 4NBQ A; 1ZZJ A; 2OPU A; 1ZTG A; 4B8T A; 2MJH A; 2ANN A; 2BL5 A; 1ZZK A; 1DTJ A; 1VIG A; 2ANR A; 4WAN A; 4QMF B; 2CTM A; 2JEB I; 2QND A; 2PQU A; 2JVZ A; 4JVH A; 4WAL A; 2JA9 A; 3VKE A; 2PY9 A; 1TUA A; 1EC6 A; 2CPQ A; 2AXY A; 2P2R A; 4AIM A; 2YQR A; 5K36 G; 2CTK A; 1ZZI A; 2CTE A; 2HH2 A; 3AEV B; 2JE6 I;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
