1AHUA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with p-cresol
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
total genus 161
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahuA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahuA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahuA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahuA03
1AHZA 3BW7A 5ADZA 2W3RA 4PVHA 3W8WA 5FXFA 2MBRA 4ML8A 1W1JA 3HRDC 2VFUA 4BCAA 3TX1A 4HG0A 1W1KA 4DNSA 1JROA 2PLIA 1FFUC 3I99A 2NQWA 2E3TA 2BVHA 4PVEA 2R8DA 3DQ0A 4PZFA 1E8HA 1DIIA 4JAYA 2I0KA 1MBBA 1ZR6A 2VFTA 5AE3A 1RM6B 3AM9A 3NVZB 2OAIA 1N5WC 5HQXA 1WVFA 3FW7A 1W1SA 2VFVA 2W3SA 4PVJA 2W54A 2R2ZA 1W1OA 3EUB3 2RK5A 1VAOA 1N60C 2YVSA 5HMRA 1VDVA 2GQTA 1N63C 3C0PA 5FXPA 4O95A 3B9JB 1V97A 1DZNA 1E8FA 3NRZB 3FWAA 1N61C 1ZXIC 4PWBA 2O3GA 2VAOA 5FXDA 4BC9A 1N62C 1F0XA 1FO4A 1I19A 3S1DA 3PM9A 2BVFA 2QKNA 3AMZA 3LLBA 1AHUA 1AHVA 3GSYA 3TSHA 3S1CA 1SB3B 4UD8A 1WVEA 3ETRB 5G5HB 1UXYA 3NS1B 3S1FA 2PLSA 1W1LA 1MBTA 1W1RA 3NVYB 1WYGA 4ZOHB 3VTEA 1N5XA 5AE1A 3NVWB 2Q4WA 1DIQA 3D2DA 2P13A 1W1MA 3W8ZA 1E8GA 2W55A 3S1EA 5FXEA 2AXRA 1FIQB 5AE2A 1W1QA 3KJMA 4EC3A 4BBYA 5HHZA 3FW8A 3NVVB 3JS8A 2QPMA 2VFRA 3SR6B 4JB1A 2EXRA 4BC7A 5D79A 1QLUA 4PYTA 4MLAA 3D2HA 3AN1A 3D2JA 4OALA 2Q85A 2VFSA 3TSJA 4PVKA 1E0YA 1FFVC 4PWCA 3LAEA 2P3HA 2GQUA 3FW9A 2P4PA 3W8XA 2BVGA 5G5GB 3DEDA 4XLOA 1T3QC 1QLTA 1JRPA 1HSKA
chains in the Genus database with same CATH superfamily
1AHZA 3BW7A 5ADZA 2W3RA 4PVHA 3W8WA 5K8EA 5FXFA 2MBRA 4ML8A 1W1JA 3HRDC 2VFUA 4BCAA 3TX1A 4HG0A 1W1KA 4DNSA 1JROA 2PLIA 1FFUC 3I99A 2NQWA 2Y3RA 2E3TA 2BVHA 4PVEA 2R8DA 3DQ0A 4PZFA 1E8HA 1DIIA 4JAYA 2I0KA 1MBBA 1ZR6A 2VFTA 5AE3A 1RM6B 3AM9A 3NVZB 2OAIA 1N5WC 5HQXA 1WVFA 3FW7A 1W1SA 3PQBA 2Y4GA 3RJ8A 2VFVA 2W3SA 5AWVA 4PVJA 2W54A 2Y3SA 2R2ZA 1W1OA 3EUB3 2RK5A 1VAOA 1N60C 2YVSA 5HMRA 1VDVA 2GQTA 1N63C 3C0PA 5FXPA 4O95A 3B9JB 1V97A 1DZNA 1E8FA 3NRZB 3FWAA 1N61C 1ZXIC 4PWBA 2O3GA 2VAOA 5FXDA 4BC9A 1N62C 1F0XA 1FO4A 1I19A 3S1DA 3PM9A 2BVFA 2QKNA 3AMZA 3LLBA 1AHUA 1AHVA 3GSYA 3TSHA 3S1CA 1SB3B 2IPIA 4UD8A 1WVEA 3ETRB 5G5HB 1UXYA 3NS1B 3S1FA 2PLSA 1W1LA 1MBTA 1W1RA 3NVYB 1WYGA 4ZOHB 3VTEA 3POPA 5I1VA 1N5XA 5AE1A 3NVWB 2UUUA 2Q4WA 1DIQA 3D2DA 2P13A 1W1MA 3W8ZA 1E8GA 2W55A 3S1EA 2WDWA 5FXEA 2AXRA 1FIQB 5AE2A 1W1QA 3KJMA 4EC3A 4BBYA 5HHZA 3FW8A 3NVVB 3JS8A 2QPMA 2VFRA 3SR6B 4JB1A 2EXRA 3EJEB 4BC7A 5D79A 1QLUA 4PYTA 4MLAA 3D2HA 3AN1A 3D2JA 4OALA 2Q85A 2VFSA 3TSJA 3HSUA 4PVKA 1E0YA 1FFVC 3RJAA 4PWCA 2Y08A 3LAEA 3EJDB 2P3HA 2GQUA 3FW9A 2P4PA 5L6FA 3W8XA 2BVGA 3EJBB 5G5GB 3DEDA 2UUVA 4XLOA 5L6GA 1T3QC 1QLTA 5I1WA 1JRPA 1HSKA
chains in the Genus database with same CATH topology
1AHZA 3BW7A 5ADZA 2W3RA 4PVHA 3W8WA 5K8EA 5FXFA 2MBRA 4ML8A 1W1JA 3HRDC 2VFUA 4BCAA 3TX1A 4HG0A 1W1KA 4DNSA 1JROA 2PLIA 1FFUC 3I99A 2NQWA 2Y3RA 2E3TA 2BVHA 4PVEA 2R8DA 3DQ0A 4PZFA 1E8HA 1DIIA 4JAYA 2I0KA 1MBBA 1ZR6A 2VFTA 5AE3A 1RM6B 3AM9A 3NVZB 2OAIA 1N5WC 5HQXA 1WVFA 3FW7A 1W1SA 3PQBA 2Y4GA 3RJ8A 2VFVA 2W3SA 5AWVA 4PVJA 2W54A 2Y3SA 2R2ZA 1W1OA 3EUB3 2RK5A 1VAOA 1N60C 2YVSA 5HMRA 1VDVA 2GQTA 1N63C 3C0PA 5FXPA 4O95A 3B9JB 1V97A 1DZNA 1E8FA 3NRZB 3FWAA 1N61C 1ZXIC 4PWBA 2O3GA 2VAOA 5FXDA 4BC9A 1N62C 1F0XA 1FO4A 1I19A 3S1DA 3PM9A 2BVFA 2QKNA 3AMZA 3LLBA 1AHUA 1AHVA 3GSYA 3TSHA 3S1CA 1SB3B 2IPIA 4UD8A 1WVEA 3ETRB 5G5HB 1UXYA 3NS1B 3S1FA 2PLSA 1W1LA 1MBTA 1W1RA 3NVYB 1WYGA 4ZOHB 3VTEA 3POPA 5I1VA 1N5XA 5AE1A 3NVWB 2UUUA 2Q4WA 1DIQA 3D2DA 2P13A 1W1MA 3W8ZA 1E8GA 2W55A 3S1EA 2WDWA 5FXEA 2AXRA 1FIQB 5AE2A 1W1QA 3KJMA 4EC3A 4BBYA 5HHZA 3FW8A 3NVVB 3JS8A 2QPMA 2VFRA 3SR6B 4JB1A 2EXRA 4BC7A 5D79A 1QLUA 4PYTA 4MLAA 3D2HA 3AN1A 3D2JA 4OALA 2Q85A 2VFSA 3TSJA 3HSUA 4PVKA 1E0YA 1FFVC 3RJAA 4PWCA 2Y08A 3LAEA 2P3HA 2GQUA 3FW9A 2P4PA 5L6FA 3W8XA 2BVGA 5G5GB 3DEDA 2UUVA 4XLOA 5L6GA 1T3QC 1QLTA 5I1WA 1JRPA 1HSKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHZ A;  3BW7 A;  5ADZ A;  2W3R A;  4PVH A;  3W8W A;  5FXF A;  2MBR A;  4ML8 A;  1W1J A;  3HRD C;  2VFU A;  4BCA A;  3TX1 A;  4HG0 A;  1W1K A;  4DNS A;  1JRO A;  2PLI A;  1FFU C;  3I99 A;  2NQW A;  2E3T A;  2BVH A;  4PVE A;  2R8D A;  3DQ0 A;  4PZF A;  1E8H A;  1DII A;  4JAY A;  2I0K A;  1MBB A;  1ZR6 A;  2VFT A;  5AE3 A;  1RM6 B;  3AM9 A;  3NVZ B;  2OAI A;  1N5W C;  5HQX A;  1WVF A;  3FW7 A;  1W1S A;  2VFV A;  2W3S A;  4PVJ A;  2W54 A;  2R2Z A;  1W1O A;  3EUB 3;  2RK5 A;  1VAO A;  1N60 C;  2YVS A;  5HMR A;  1VDV A;  2GQT A;  1N63 C;  3C0P A;  5FXP A;  4O95 A;  3B9J B;  1V97 A;  1DZN A;  1E8F A;  3NRZ B;  3FWA A;  1N61 C;  1ZXI C;  4PWB A;  2O3G A;  2VAO A;  5FXD A;  4BC9 A;  1N62 C;  1F0X A;  1FO4 A;  1I19 A;  3S1D A;  3PM9 A;  2BVF A;  2QKN A;  3AMZ A;  3LLB A;  1AHU A;  1AHV A;  3GSY A;  3TSH A;  3S1C A;  1SB3 B;  4UD8 A;  1WVE A;  3ETR B;  5G5H B;  1UXY A;  3NS1 B;  3S1F A;  2PLS A;  1W1L A;  1MBT A;  1W1R A;  3NVY B;  1WYG A;  4ZOH B;  3VTE A;  1N5X A;  5AE1 A;  3NVW B;  2Q4W A;  1DIQ A;  3D2D A;  2P13 A;  1W1M A;  3W8Z A;  1E8G A;  2W55 A;  3S1E A;  5FXE A;  2AXR A;  1FIQ B;  5AE2 A;  1W1Q A;  3KJM A;  4EC3 A;  4BBY A;  5HHZ A;  3FW8 A;  3NVV B;  3JS8 A;  2QPM A;  2VFR A;  3SR6 B;  4JB1 A;  2EXR A;  4BC7 A;  5D79 A;  1QLU A;  4PYT A;  4MLA A;  3D2H A;  3AN1 A;  3D2J A;  4OAL A;  2Q85 A;  2VFS A;  3TSJ A;  4PVK A;  1E0Y A;  1FFV C;  4PWC A;  3LAE A;  2P3H A;  2GQU A;  3FW9 A;  2P4P A;  3W8X A;  2BVG A;  5G5G B;  3DED A;  4XLO A;  1T3Q C;  1QLT A;  1JRP A;  1HSK A; 
#chains in the Genus database with same CATH topology
 1AHZ A;  3BW7 A;  5ADZ A;  2W3R A;  4PVH A;  3W8W A;  5K8E A;  5FXF A;  2MBR A;  4ML8 A;  1W1J A;  3HRD C;  2VFU A;  4BCA A;  3TX1 A;  4HG0 A;  1W1K A;  4DNS A;  1JRO A;  2PLI A;  1FFU C;  3I99 A;  2NQW A;  2Y3R A;  2E3T A;  2BVH A;  4PVE A;  2R8D A;  3DQ0 A;  4PZF A;  1E8H A;  1DII A;  4JAY A;  2I0K A;  1MBB A;  1ZR6 A;  2VFT A;  5AE3 A;  1RM6 B;  3AM9 A;  3NVZ B;  2OAI A;  1N5W C;  5HQX A;  1WVF A;  3FW7 A;  1W1S A;  3PQB A;  2Y4G A;  3RJ8 A;  2VFV A;  2W3S A;  5AWV A;  4PVJ A;  2W54 A;  2Y3S A;  2R2Z A;  1W1O A;  3EUB 3;  2RK5 A;  1VAO A;  1N60 C;  2YVS A;  5HMR A;  1VDV A;  2GQT A;  1N63 C;  3C0P A;  5FXP A;  4O95 A;  3B9J B;  1V97 A;  1DZN A;  1E8F A;  3NRZ B;  3FWA A;  1N61 C;  1ZXI C;  4PWB A;  2O3G A;  2VAO A;  5FXD A;  4BC9 A;  1N62 C;  1F0X A;  1FO4 A;  1I19 A;  3S1D A;  3PM9 A;  2BVF A;  2QKN A;  3AMZ A;  3LLB A;  1AHU A;  1AHV A;  3GSY A;  3TSH A;  3S1C A;  1SB3 B;  2IPI A;  4UD8 A;  1WVE A;  3ETR B;  5G5H B;  1UXY A;  3NS1 B;  3S1F A;  2PLS A;  1W1L A;  1MBT A;  1W1R A;  3NVY B;  1WYG A;  4ZOH B;  3VTE A;  3POP A;  5I1V A;  1N5X A;  5AE1 A;  3NVW B;  2UUU A;  2Q4W A;  1DIQ A;  3D2D A;  2P13 A;  1W1M A;  3W8Z A;  1E8G A;  2W55 A;  3S1E A;  2WDW A;  5FXE A;  2AXR A;  1FIQ B;  5AE2 A;  1W1Q A;  3KJM A;  4EC3 A;  4BBY A;  5HHZ A;  3FW8 A;  3NVV B;  3JS8 A;  2QPM A;  2VFR A;  3SR6 B;  4JB1 A;  2EXR A;  3EJE B;  4BC7 A;  5D79 A;  1QLU A;  4PYT A;  4MLA A;  3D2H A;  3AN1 A;  3D2J A;  4OAL A;  2Q85 A;  2VFS A;  3TSJ A;  3HSU A;  4PVK A;  1E0Y A;  1FFV C;  3RJA A;  4PWC A;  2Y08 A;  3LAE A;  3EJD B;  2P3H A;  2GQU A;  3FW9 A;  2P4P A;  5L6F A;  3W8X A;  2BVG A;  3EJB B;  5G5G B;  3DED A;  2UUV A;  4XLO A;  5L6G A;  1T3Q C;  1QLT A;  5I1W A;  1JRP A;  1HSK A; 
#chains in the Genus database with same CATH homology
 1AHZ A;  3BW7 A;  5ADZ A;  2W3R A;  4PVH A;  3W8W A;  5K8E A;  5FXF A;  2MBR A;  4ML8 A;  1W1J A;  3HRD C;  2VFU A;  4BCA A;  3TX1 A;  4HG0 A;  1W1K A;  4DNS A;  1JRO A;  2PLI A;  1FFU C;  3I99 A;  2NQW A;  2Y3R A;  2E3T A;  2BVH A;  4PVE A;  2R8D A;  3DQ0 A;  4PZF A;  1E8H A;  1DII A;  4JAY A;  2I0K A;  1MBB A;  1ZR6 A;  2VFT A;  5AE3 A;  1RM6 B;  3AM9 A;  3NVZ B;  2OAI A;  1N5W C;  5HQX A;  1WVF A;  3FW7 A;  1W1S A;  3PQB A;  2Y4G A;  3RJ8 A;  2VFV A;  2W3S A;  5AWV A;  4PVJ A;  2W54 A;  2Y3S A;  2R2Z A;  1W1O A;  3EUB 3;  2RK5 A;  1VAO A;  1N60 C;  2YVS A;  5HMR A;  1VDV A;  2GQT A;  1N63 C;  3C0P A;  5FXP A;  4O95 A;  3B9J B;  1V97 A;  1DZN A;  1E8F A;  3NRZ B;  3FWA A;  1N61 C;  1ZXI C;  4PWB A;  2O3G A;  2VAO A;  5FXD A;  4BC9 A;  1N62 C;  1F0X A;  1FO4 A;  1I19 A;  3S1D A;  3PM9 A;  2BVF A;  2QKN A;  3AMZ A;  3LLB A;  1AHU A;  1AHV A;  3GSY A;  3TSH A;  3S1C A;  1SB3 B;  2IPI A;  4UD8 A;  1WVE A;  3ETR B;  5G5H B;  1UXY A;  3NS1 B;  3S1F A;  2PLS A;  1W1L A;  1MBT A;  1W1R A;  3NVY B;  1WYG A;  4ZOH B;  3VTE A;  3POP A;  5I1V A;  1N5X A;  5AE1 A;  3NVW B;  2UUU A;  2Q4W A;  1DIQ A;  3D2D A;  2P13 A;  1W1M A;  3W8Z A;  1E8G A;  2W55 A;  3S1E A;  2WDW A;  5FXE A;  2AXR A;  1FIQ B;  5AE2 A;  1W1Q A;  3KJM A;  4EC3 A;  4BBY A;  5HHZ A;  3FW8 A;  3NVV B;  3JS8 A;  2QPM A;  2VFR A;  3SR6 B;  4JB1 A;  2EXR A;  4BC7 A;  5D79 A;  1QLU A;  4PYT A;  4MLA A;  3D2H A;  3AN1 A;  3D2J A;  4OAL A;  2Q85 A;  2VFS A;  3TSJ A;  3HSU A;  4PVK A;  1E0Y A;  1FFV C;  3RJA A;  4PWC A;  2Y08 A;  3LAE A;  2P3H A;  2GQU A;  3FW9 A;  2P4P A;  5L6F A;  3W8X A;  2BVG A;  5G5G B;  3DED A;  2UUV A;  4XLO A;  5L6G A;  1T3Q C;  1QLT A;  5I1W A;  1JRP A;  1HSK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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