1AHUA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with p-cresol
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
total genus 161
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahuA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahuA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahuA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahuA03
3TSHA 1FFVC 1DZNA 1AHZA 5D79A 2PLIA 1I19A 5G5GB 4BBYA 4PVEA 1N63C 1W1KA 1E0YA 3BW7A 5AE3A 4PVHA 2AXRA 2VFRA 2GQUA 1W1OA 1ZXIC 5FXPA 3VTEA 5FXDA 4BC7A 4ML8A 3D2DA 4XLOA 1HSKA 3AMZA 2Q4WA 3HRDC 2BVHA 3S1FA 1MBTA 1DIIA 1E8HA 1W1QA 1W1MA 3GSYA 2P13A 3NVWB 1FO4A 3FW7A 2W3RA 3LLBA 1W1LA 3NRZB 1VAOA 1MBBA 3D2JA 3W8WA 3NVZB 2RK5A 2VFSA 1F0XA 1N60C 3TX1A 1N5XA 3SR6B 4O95A 1WVFA 1N62C 4PVJA 2Q85A 2W3SA 1ZR6A 2GQTA 5AE1A 5ADZA 3W8XA 3NS1B 2P3HA 1WYGA 2OAIA 3S1CA 4HG0A 3D2HA 1E8FA 1JRPA 4EC3A 1JROA 1QLTA 5FXFA 3S1EA 5HHZA 4PWCA 4PZFA 4BC9A 4PWBA 3AN1A 4PYTA 3S1DA 2R8DA 3NVYB 2EXRA 1SB3B 4DNSA 2MBRA 2VFVA 5AE2A 2P4PA 4JAYA 2E3TA 3W8ZA 2I0KA 3PM9A 1AHUA 1T3QC 3LAEA 3EUB3 5G5HB 2BVGA 2O3GA 2R2ZA 2BVFA 1N5WC 3NVVB 2NQWA 2VAOA 1FFUC 2QKNA 5HMRA 3FWAA 3DEDA 3KJMA 2VFUA 1W1RA 2QPMA 2YVSA 3FW9A 4OALA 3TSJA 2PLSA 4BCAA 1W1JA 3AM9A 2VFTA 4ZOHB 3B9JB 1WVEA 2W55A 4MLAA 1RM6B 3FW8A 1N61C 3JS8A 1AHVA 4PVKA 5HQXA 2W54A 3ETRB 1QLUA 1UXYA 4UD8A 3DQ0A 1W1SA 4JB1A 5FXEA 3C0PA 3I99A 1DIQA 1FIQB 1V97A 1E8GA 1VDVA
chains in the Genus database with same CATH superfamily
3TSHA 1FFVC 1DZNA 1AHZA 3EJDB 5D79A 3HSUA 2PLIA 1I19A 2UUUA 5G5GB 4BBYA 4PVEA 1N63C 1W1KA 1E0YA 3BW7A 5AE3A 4PVHA 2AXRA 2VFRA 2GQUA 1W1OA 1ZXIC 5FXPA 3VTEA 5FXDA 3RJ8A 4BC7A 4ML8A 3D2DA 4XLOA 1HSKA 3AMZA 2Q4WA 3HRDC 2BVHA 3S1FA 1MBTA 1DIIA 1E8HA 1W1QA 1W1MA 3GSYA 3NVWB 2P13A 1FO4A 3FW7A 2W3RA 3LLBA 1W1LA 3NRZB 1VAOA 1MBBA 3D2JA 3W8WA 3NVZB 2RK5A 2VFSA 1F0XA 1N60C 3TX1A 5I1WA 1N5XA 3SR6B 4O95A 1WVFA 1N62C 4PVJA 2Q85A 5AWVA 2W3SA 1ZR6A 2GQTA 5L6FA 5AE1A 5ADZA 3W8XA 3NS1B 2P3HA 1WYGA 2OAIA 3S1CA 4HG0A 3D2HA 1E8FA 1JRPA 4EC3A 1JROA 5I1VA 1QLTA 5FXFA 3S1EA 5HHZA 3RJAA 4PWCA 4PZFA 2IPIA 4BC9A 4PWBA 3AN1A 4PYTA 3S1DA 2R8DA 3NVYB 2EXRA 1SB3B 4DNSA 2MBRA 3EJEB 2VFVA 5AE2A 2P4PA 3EJBB 4JAYA 2E3TA 3W8ZA 2I0KA 3PM9A 1AHUA 1T3QC 3LAEA 3EUB3 5G5HB 2BVGA 2O3GA 2R2ZA 2UUVA 2BVFA 1N5WC 3NVVB 2NQWA 2VAOA 1FFUC 2QKNA 5HMRA 2Y08A 3FWAA 3DEDA 3KJMA 2VFUA 1W1RA 2QPMA 2YVSA 3FW9A 4OALA 3TSJA 2WDWA 2Y3SA 2PLSA 4BCAA 2Y3RA 1W1JA 3AM9A 2VFTA 4ZOHB 5K8EA 3B9JB 1WVEA 5L6GA 2W55A 4MLAA 1RM6B 3FW8A 1N61C 3JS8A 1AHVA 4PVKA 5HQXA 2W54A 3ETRB 1QLUA 1UXYA 4UD8A 3DQ0A 1W1SA 4JB1A 2Y4GA 3POPA 5FXEA 3C0PA 3I99A 3PQBA 1DIQA 1FIQB 1V97A 1E8GA 1VDVA
chains in the Genus database with same CATH topology
3TSHA 1FFVC 1DZNA 1AHZA 5D79A 3HSUA 2PLIA 1I19A 2UUUA 5G5GB 4BBYA 4PVEA 1N63C 1W1KA 1E0YA 3BW7A 5AE3A 4PVHA 2AXRA 2VFRA 2GQUA 1W1OA 1ZXIC 5FXPA 3VTEA 5FXDA 3RJ8A 4BC7A 4ML8A 3D2DA 4XLOA 1HSKA 3AMZA 2Q4WA 3HRDC 2BVHA 3S1FA 1MBTA 1DIIA 1E8HA 1W1QA 1W1MA 3GSYA 2P13A 3NVWB 1FO4A 3FW7A 2W3RA 3LLBA 1W1LA 3NRZB 1VAOA 1MBBA 3D2JA 3W8WA 3NVZB 2RK5A 2VFSA 1F0XA 1N60C 3TX1A 5I1WA 1N5XA 3SR6B 4O95A 1WVFA 1N62C 4PVJA 2Q85A 5AWVA 2W3SA 1ZR6A 2GQTA 5L6FA 5AE1A 5ADZA 3W8XA 3NS1B 2P3HA 1WYGA 2OAIA 3S1CA 4HG0A 3D2HA 1E8FA 1JRPA 4EC3A 1JROA 5I1VA 1QLTA 5FXFA 3S1EA 5HHZA 3RJAA 4PWCA 4PZFA 2IPIA 4BC9A 4PWBA 3AN1A 4PYTA 3S1DA 2R8DA 3NVYB 2EXRA 1SB3B 4DNSA 2MBRA 2VFVA 5AE2A 2P4PA 4JAYA 2E3TA 3W8ZA 2I0KA 3PM9A 1AHUA 1T3QC 3LAEA 3EUB3 5G5HB 2BVGA 2O3GA 2R2ZA 2UUVA 2BVFA 1N5WC 3NVVB 2NQWA 2VAOA 1FFUC 2QKNA 5HMRA 2Y08A 3FWAA 3DEDA 3KJMA 2VFUA 1W1RA 2QPMA 2YVSA 3FW9A 4OALA 3TSJA 2WDWA 2Y3SA 2PLSA 4BCAA 2Y3RA 1W1JA 3AM9A 2VFTA 4ZOHB 5K8EA 3B9JB 1WVEA 5L6GA 2W55A 4MLAA 1RM6B 3FW8A 1N61C 3JS8A 1AHVA 4PVKA 5HQXA 2W54A 3ETRB 1QLUA 1UXYA 4UD8A 3DQ0A 1W1SA 4JB1A 2Y4GA 3POPA 5FXEA 3C0PA 3I99A 3PQBA 1DIQA 1FIQB 1V97A 1E8GA 1VDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TSH A;  1FFV C;  1DZN A;  1AHZ A;  5D79 A;  2PLI A;  1I19 A;  5G5G B;  4BBY A;  4PVE A;  1N63 C;  1W1K A;  1E0Y A;  3BW7 A;  5AE3 A;  4PVH A;  2AXR A;  2VFR A;  2GQU A;  1W1O A;  1ZXI C;  5FXP A;  3VTE A;  5FXD A;  4BC7 A;  4ML8 A;  3D2D A;  4XLO A;  1HSK A;  3AMZ A;  2Q4W A;  3HRD C;  2BVH A;  3S1F A;  1MBT A;  1DII A;  1E8H A;  1W1Q A;  1W1M A;  3GSY A;  2P13 A;  3NVW B;  1FO4 A;  3FW7 A;  2W3R A;  3LLB A;  1W1L A;  3NRZ B;  1VAO A;  1MBB A;  3D2J A;  3W8W A;  3NVZ B;  2RK5 A;  2VFS A;  1F0X A;  1N60 C;  3TX1 A;  1N5X A;  3SR6 B;  4O95 A;  1WVF A;  1N62 C;  4PVJ A;  2Q85 A;  2W3S A;  1ZR6 A;  2GQT A;  5AE1 A;  5ADZ A;  3W8X A;  3NS1 B;  2P3H A;  1WYG A;  2OAI A;  3S1C A;  4HG0 A;  3D2H A;  1E8F A;  1JRP A;  4EC3 A;  1JRO A;  1QLT A;  5FXF A;  3S1E A;  5HHZ A;  4PWC A;  4PZF A;  4BC9 A;  4PWB A;  3AN1 A;  4PYT A;  3S1D A;  2R8D A;  3NVY B;  2EXR A;  1SB3 B;  4DNS A;  2MBR A;  2VFV A;  5AE2 A;  2P4P A;  4JAY A;  2E3T A;  3W8Z A;  2I0K A;  3PM9 A;  1AHU A;  1T3Q C;  3LAE A;  3EUB 3;  5G5H B;  2BVG A;  2O3G A;  2R2Z A;  2BVF A;  1N5W C;  3NVV B;  2NQW A;  2VAO A;  1FFU C;  2QKN A;  5HMR A;  3FWA A;  3DED A;  3KJM A;  2VFU A;  1W1R A;  2QPM A;  2YVS A;  3FW9 A;  4OAL A;  3TSJ A;  2PLS A;  4BCA A;  1W1J A;  3AM9 A;  2VFT A;  4ZOH B;  3B9J B;  1WVE A;  2W55 A;  4MLA A;  1RM6 B;  3FW8 A;  1N61 C;  3JS8 A;  1AHV A;  4PVK A;  5HQX A;  2W54 A;  3ETR B;  1QLU A;  1UXY A;  4UD8 A;  3DQ0 A;  1W1S A;  4JB1 A;  5FXE A;  3C0P A;  3I99 A;  1DIQ A;  1FIQ B;  1V97 A;  1E8G A;  1VDV A; 
#chains in the Genus database with same CATH topology
 3TSH A;  1FFV C;  1DZN A;  1AHZ A;  3EJD B;  5D79 A;  3HSU A;  2PLI A;  1I19 A;  2UUU A;  5G5G B;  4BBY A;  4PVE A;  1N63 C;  1W1K A;  1E0Y A;  3BW7 A;  5AE3 A;  4PVH A;  2AXR A;  2VFR A;  2GQU A;  1W1O A;  1ZXI C;  5FXP A;  3VTE A;  5FXD A;  3RJ8 A;  4BC7 A;  4ML8 A;  3D2D A;  4XLO A;  1HSK A;  3AMZ A;  2Q4W A;  3HRD C;  2BVH A;  3S1F A;  1MBT A;  1DII A;  1E8H A;  1W1Q A;  1W1M A;  3GSY A;  3NVW B;  2P13 A;  1FO4 A;  3FW7 A;  2W3R A;  3LLB A;  1W1L A;  3NRZ B;  1VAO A;  1MBB A;  3D2J A;  3W8W A;  3NVZ B;  2RK5 A;  2VFS A;  1F0X A;  1N60 C;  3TX1 A;  5I1W A;  1N5X A;  3SR6 B;  4O95 A;  1WVF A;  1N62 C;  4PVJ A;  2Q85 A;  5AWV A;  2W3S A;  1ZR6 A;  2GQT A;  5L6F A;  5AE1 A;  5ADZ A;  3W8X A;  3NS1 B;  2P3H A;  1WYG A;  2OAI A;  3S1C A;  4HG0 A;  3D2H A;  1E8F A;  1JRP A;  4EC3 A;  1JRO A;  5I1V A;  1QLT A;  5FXF A;  3S1E A;  5HHZ A;  3RJA A;  4PWC A;  4PZF A;  2IPI A;  4BC9 A;  4PWB A;  3AN1 A;  4PYT A;  3S1D A;  2R8D A;  3NVY B;  2EXR A;  1SB3 B;  4DNS A;  2MBR A;  3EJE B;  2VFV A;  5AE2 A;  2P4P A;  3EJB B;  4JAY A;  2E3T A;  3W8Z A;  2I0K A;  3PM9 A;  1AHU A;  1T3Q C;  3LAE A;  3EUB 3;  5G5H B;  2BVG A;  2O3G A;  2R2Z A;  2UUV A;  2BVF A;  1N5W C;  3NVV B;  2NQW A;  2VAO A;  1FFU C;  2QKN A;  5HMR A;  2Y08 A;  3FWA A;  3DED A;  3KJM A;  2VFU A;  1W1R A;  2QPM A;  2YVS A;  3FW9 A;  4OAL A;  3TSJ A;  2WDW A;  2Y3S A;  2PLS A;  4BCA A;  2Y3R A;  1W1J A;  3AM9 A;  2VFT A;  4ZOH B;  5K8E A;  3B9J B;  1WVE A;  5L6G A;  2W55 A;  4MLA A;  1RM6 B;  3FW8 A;  1N61 C;  3JS8 A;  1AHV A;  4PVK A;  5HQX A;  2W54 A;  3ETR B;  1QLU A;  1UXY A;  4UD8 A;  3DQ0 A;  1W1S A;  4JB1 A;  2Y4G A;  3POP A;  5FXE A;  3C0P A;  3I99 A;  3PQB A;  1DIQ A;  1FIQ B;  1V97 A;  1E8G A;  1VDV A; 
#chains in the Genus database with same CATH homology
 3TSH A;  1FFV C;  1DZN A;  1AHZ A;  5D79 A;  3HSU A;  2PLI A;  1I19 A;  2UUU A;  5G5G B;  4BBY A;  4PVE A;  1N63 C;  1W1K A;  1E0Y A;  3BW7 A;  5AE3 A;  4PVH A;  2AXR A;  2VFR A;  2GQU A;  1W1O A;  1ZXI C;  5FXP A;  3VTE A;  5FXD A;  3RJ8 A;  4BC7 A;  4ML8 A;  3D2D A;  4XLO A;  1HSK A;  3AMZ A;  2Q4W A;  3HRD C;  2BVH A;  3S1F A;  1MBT A;  1DII A;  1E8H A;  1W1Q A;  1W1M A;  3GSY A;  2P13 A;  3NVW B;  1FO4 A;  3FW7 A;  2W3R A;  3LLB A;  1W1L A;  3NRZ B;  1VAO A;  1MBB A;  3D2J A;  3W8W A;  3NVZ B;  2RK5 A;  2VFS A;  1F0X A;  1N60 C;  3TX1 A;  5I1W A;  1N5X A;  3SR6 B;  4O95 A;  1WVF A;  1N62 C;  4PVJ A;  2Q85 A;  5AWV A;  2W3S A;  1ZR6 A;  2GQT A;  5L6F A;  5AE1 A;  5ADZ A;  3W8X A;  3NS1 B;  2P3H A;  1WYG A;  2OAI A;  3S1C A;  4HG0 A;  3D2H A;  1E8F A;  1JRP A;  4EC3 A;  1JRO A;  5I1V A;  1QLT A;  5FXF A;  3S1E A;  5HHZ A;  3RJA A;  4PWC A;  4PZF A;  2IPI A;  4BC9 A;  4PWB A;  3AN1 A;  4PYT A;  3S1D A;  2R8D A;  3NVY B;  2EXR A;  1SB3 B;  4DNS A;  2MBR A;  2VFV A;  5AE2 A;  2P4P A;  4JAY A;  2E3T A;  3W8Z A;  2I0K A;  3PM9 A;  1AHU A;  1T3Q C;  3LAE A;  3EUB 3;  5G5H B;  2BVG A;  2O3G A;  2R2Z A;  2UUV A;  2BVF A;  1N5W C;  3NVV B;  2NQW A;  2VAO A;  1FFU C;  2QKN A;  5HMR A;  2Y08 A;  3FWA A;  3DED A;  3KJM A;  2VFU A;  1W1R A;  2QPM A;  2YVS A;  3FW9 A;  4OAL A;  3TSJ A;  2WDW A;  2Y3S A;  2PLS A;  4BCA A;  2Y3R A;  1W1J A;  3AM9 A;  2VFT A;  4ZOH B;  5K8E A;  3B9J B;  1WVE A;  5L6G A;  2W55 A;  4MLA A;  1RM6 B;  3FW8 A;  1N61 C;  3JS8 A;  1AHV A;  4PVK A;  5HQX A;  2W54 A;  3ETR B;  1QLU A;  1UXY A;  4UD8 A;  3DQ0 A;  1W1S A;  4JB1 A;  2Y4G A;  3POP A;  5FXE A;  3C0P A;  3I99 A;  3PQB A;  1DIQ A;  1FIQ B;  1V97 A;  1E8G A;  1VDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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