4ML8A

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
488
structure length
488
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPVQASHFQSDGRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin oxidase 2
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 150
structure length 488
sequence length 488
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ml8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ml8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4ml8A03
4PZFA 3AM9A 3S1DA 4ZOHB 2VFUA 4ML8A 1V97A 2P13A 1E0YA 1MBBA 1QLUA 1E8FA 5ADZA 3D2JA 5AE1A 3W8ZA 1N5XA 3AMZA 3C0PA 1I19A 1W1MA 4JB1A 5G5GB 2E3TA 2W54A 2P3HA 3ETRB 1UXYA 1AHVA 3NS1B 4UD8A 3D2HA 1W1QA 2AXRA 1N61C 5AE3A 3S1FA 4DNSA 1N60C 2VAOA 4BCAA 1SB3B 1DIIA 1DIQA 2QPMA 3PM9A 1HSKA 2VFVA 2PLIA 1W1RA 1W1JA 1W1SA 2EXRA 2YVSA 1E8GA 5FXEA 3B9JB 2MBRA 1WYGA 5FXDA 1VAOA 2I0KA 3I99A 2VFSA 3FW7A 2BVHA 5FXPA 3W8WA 1JROA 3KJMA 4BBYA 3LAEA 3FWAA 2BVFA 1T3QC 3NVZB 2Q85A 2QKNA 4PYTA 1WVFA 5G5HB 1ZR6A 3D2DA 1RM6B 4EC3A 1FIQB 1N62C 2VFRA 3NRZB 3AN1A 1W1OA 4BC7A 2NQWA 1W1KA 3JS8A 4XLOA 3S1CA 3TSJA 1MBTA 3NVWB 1F0XA 2RK5A 3W8XA 4PVHA 3DQ0A 1JRPA 1FFVC 1WVEA 1VDVA 2GQUA 1DZNA 3DEDA 2W3RA 3TSHA 4PWBA 1QLTA 4PVEA 3BW7A 1FO4A 4PVJA 4MLAA 4OALA 2P4PA 5HMRA 3TX1A 3FW8A 5FXFA 3VTEA 2W55A 3HRDC 5HHZA 3FW9A 2VFTA 1W1LA 2Q4WA 1N5WC 5HQXA 2R2ZA 5D79A 1FFUC 3GSYA 3NVVB 4BC9A 3NVYB 3LLBA 2O3GA 4PWCA 1ZXIC 2PLSA 4PVKA 1N63C 5AE2A 2OAIA 4JAYA 1E8HA 3S1EA 3EUB3 2GQTA 2BVGA 3SR6B 2W3SA 4O95A 4HG0A 2R8DA 1AHUA 1AHZA
chains in the Genus database with same CATH superfamily
4PZFA 3AM9A 3S1DA 3POPA 4ZOHB 2VFUA 3RJAA 4ML8A 1V97A 2P13A 1E0YA 1MBBA 1QLUA 2Y4GA 1E8FA 5ADZA 3D2JA 2UUUA 5AE1A 3EJBB 5L6GA 3W8ZA 1N5XA 3AMZA 3C0PA 1I19A 1W1MA 4JB1A 5G5GB 2E3TA 2W54A 2P3HA 3ETRB 1UXYA 3RJ8A 1AHVA 3NS1B 4UD8A 2Y3RA 3D2HA 1W1QA 2AXRA 1N61C 5AE3A 3S1FA 4DNSA 1N60C 2VAOA 4BCAA 1SB3B 1DIIA 1DIQA 2QPMA 3PM9A 2UUVA 1HSKA 2VFVA 2PLIA 1W1RA 1W1JA 1W1SA 2EXRA 2YVSA 1E8GA 5FXEA 3B9JB 2MBRA 1WYGA 5FXDA 1VAOA 2I0KA 3I99A 2VFSA 5AWVA 3FW7A 2BVHA 5I1WA 5I1VA 5FXPA 3W8WA 1JROA 3KJMA 4BBYA 3LAEA 3FWAA 2BVFA 1T3QC 3NVZB 2Q85A 2QKNA 4PYTA 1WVFA 5G5HB 1ZR6A 5K8EA 3D2DA 3EJDB 1RM6B 4EC3A 1FIQB 1N62C 2VFRA 3NRZB 3AN1A 1W1OA 4BC7A 2NQWA 1W1KA 3JS8A 4XLOA 3S1CA 3TSJA 1MBTA 2IPIA 3NVWB 1F0XA 2RK5A 3W8XA 4PVHA 3DQ0A 1JRPA 1FFVC 1WVEA 1VDVA 2GQUA 1DZNA 3DEDA 2W3RA 3TSHA 4PWBA 1QLTA 4PVEA 3BW7A 1FO4A 4PVJA 4MLAA 4OALA 2P4PA 5HMRA 2WDWA 3TX1A 3FW8A 5FXFA 3VTEA 2W55A 3HRDC 2Y08A 5HHZA 3HSUA 3FW9A 2VFTA 3PQBA 1W1LA 2Q4WA 1N5WC 5L6FA 5HQXA 2R2ZA 2Y3SA 5D79A 1FFUC 3GSYA 3NVVB 3NVYB 4BC9A 3LLBA 2O3GA 4PWCA 3EJEB 1ZXIC 2PLSA 4PVKA 1N63C 5AE2A 2OAIA 4JAYA 1E8HA 3S1EA 3EUB3 2GQTA 2BVGA 3SR6B 2W3SA 4O95A 4HG0A 2R8DA 1AHUA 1AHZA
chains in the Genus database with same CATH topology
4PZFA 3AM9A 3S1DA 3POPA 4ZOHB 2VFUA 3RJAA 4ML8A 1V97A 2P13A 1E0YA 1MBBA 1QLUA 2Y4GA 1E8FA 5ADZA 3D2JA 2UUUA 5AE1A 5L6GA 3W8ZA 1N5XA 3AMZA 3C0PA 1I19A 1W1MA 4JB1A 5G5GB 2E3TA 2W54A 2P3HA 3ETRB 1UXYA 3RJ8A 1AHVA 3NS1B 4UD8A 2Y3RA 3D2HA 1W1QA 2AXRA 1N61C 5AE3A 3S1FA 4DNSA 1N60C 2VAOA 4BCAA 1SB3B 1DIIA 1DIQA 2QPMA 3PM9A 2UUVA 1HSKA 2VFVA 2PLIA 1W1RA 1W1JA 1W1SA 2EXRA 2YVSA 1E8GA 5FXEA 3B9JB 2MBRA 1WYGA 5FXDA 1VAOA 2I0KA 3I99A 2VFSA 5AWVA 3FW7A 2BVHA 5I1WA 5I1VA 5FXPA 3W8WA 1JROA 3KJMA 4BBYA 3LAEA 3FWAA 2BVFA 1T3QC 3NVZB 2Q85A 2QKNA 4PYTA 1WVFA 5G5HB 1ZR6A 5K8EA 3D2DA 1RM6B 4EC3A 1FIQB 1N62C 2VFRA 3NRZB 3AN1A 1W1OA 4BC7A 2NQWA 1W1KA 3JS8A 4XLOA 3S1CA 3TSJA 1MBTA 2IPIA 3NVWB 1F0XA 2RK5A 3W8XA 4PVHA 3DQ0A 1JRPA 1FFVC 1WVEA 1VDVA 2GQUA 1DZNA 3DEDA 2W3RA 3TSHA 4PWBA 1QLTA 4PVEA 3BW7A 1FO4A 4PVJA 4MLAA 4OALA 2P4PA 5HMRA 2WDWA 3TX1A 3FW8A 5FXFA 3VTEA 2W55A 3HRDC 2Y08A 5HHZA 3HSUA 3FW9A 2VFTA 3PQBA 1W1LA 2Q4WA 1N5WC 5L6FA 5HQXA 2R2ZA 2Y3SA 5D79A 1FFUC 3GSYA 3NVVB 4BC9A 3NVYB 3LLBA 2O3GA 4PWCA 1ZXIC 2PLSA 4PVKA 1N63C 5AE2A 2OAIA 4JAYA 1E8HA 3S1EA 3EUB3 2GQTA 2BVGA 3SR6B 2W3SA 4O95A 4HG0A 2R8DA 1AHUA 1AHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PZF A;  3AM9 A;  3S1D A;  4ZOH B;  2VFU A;  4ML8 A;  1V97 A;  2P13 A;  1E0Y A;  1MBB A;  1QLU A;  1E8F A;  5ADZ A;  3D2J A;  5AE1 A;  3W8Z A;  1N5X A;  3AMZ A;  3C0P A;  1I19 A;  1W1M A;  4JB1 A;  5G5G B;  2E3T A;  2W54 A;  2P3H A;  3ETR B;  1UXY A;  1AHV A;  3NS1 B;  4UD8 A;  3D2H A;  1W1Q A;  2AXR A;  1N61 C;  5AE3 A;  3S1F A;  4DNS A;  1N60 C;  2VAO A;  4BCA A;  1SB3 B;  1DII A;  1DIQ A;  2QPM A;  3PM9 A;  1HSK A;  2VFV A;  2PLI A;  1W1R A;  1W1J A;  1W1S A;  2EXR A;  2YVS A;  1E8G A;  5FXE A;  3B9J B;  2MBR A;  1WYG A;  5FXD A;  1VAO A;  2I0K A;  3I99 A;  2VFS A;  3FW7 A;  2BVH A;  5FXP A;  3W8W A;  1JRO A;  3KJM A;  4BBY A;  3LAE A;  3FWA A;  2BVF A;  1T3Q C;  3NVZ B;  2Q85 A;  2QKN A;  4PYT A;  1WVF A;  5G5H B;  1ZR6 A;  3D2D A;  1RM6 B;  4EC3 A;  1FIQ B;  1N62 C;  2VFR A;  3NRZ B;  3AN1 A;  1W1O A;  4BC7 A;  2NQW A;  1W1K A;  3JS8 A;  4XLO A;  3S1C A;  3TSJ A;  1MBT A;  3NVW B;  1F0X A;  2RK5 A;  3W8X A;  4PVH A;  3DQ0 A;  1JRP A;  1FFV C;  1WVE A;  1VDV A;  2GQU A;  1DZN A;  3DED A;  2W3R A;  3TSH A;  4PWB A;  1QLT A;  4PVE A;  3BW7 A;  1FO4 A;  4PVJ A;  4MLA A;  4OAL A;  2P4P A;  5HMR A;  3TX1 A;  3FW8 A;  5FXF A;  3VTE A;  2W55 A;  3HRD C;  5HHZ A;  3FW9 A;  2VFT A;  1W1L A;  2Q4W A;  1N5W C;  5HQX A;  2R2Z A;  5D79 A;  1FFU C;  3GSY A;  3NVV B;  4BC9 A;  3NVY B;  3LLB A;  2O3G A;  4PWC A;  1ZXI C;  2PLS A;  4PVK A;  1N63 C;  5AE2 A;  2OAI A;  4JAY A;  1E8H A;  3S1E A;  3EUB 3;  2GQT A;  2BVG A;  3SR6 B;  2W3S A;  4O95 A;  4HG0 A;  2R8D A;  1AHU A;  1AHZ A; 
#chains in the Genus database with same CATH topology
 4PZF A;  3AM9 A;  3S1D A;  3POP A;  4ZOH B;  2VFU A;  3RJA A;  4ML8 A;  1V97 A;  2P13 A;  1E0Y A;  1MBB A;  1QLU A;  2Y4G A;  1E8F A;  5ADZ A;  3D2J A;  2UUU A;  5AE1 A;  3EJB B;  5L6G A;  3W8Z A;  1N5X A;  3AMZ A;  3C0P A;  1I19 A;  1W1M A;  4JB1 A;  5G5G B;  2E3T A;  2W54 A;  2P3H A;  3ETR B;  1UXY A;  3RJ8 A;  1AHV A;  3NS1 B;  4UD8 A;  2Y3R A;  3D2H A;  1W1Q A;  2AXR A;  1N61 C;  5AE3 A;  3S1F A;  4DNS A;  1N60 C;  2VAO A;  4BCA A;  1SB3 B;  1DII A;  1DIQ A;  2QPM A;  3PM9 A;  2UUV A;  1HSK A;  2VFV A;  2PLI A;  1W1R A;  1W1J A;  1W1S A;  2EXR A;  2YVS A;  1E8G A;  5FXE A;  3B9J B;  2MBR A;  1WYG A;  5FXD A;  1VAO A;  2I0K A;  3I99 A;  2VFS A;  5AWV A;  3FW7 A;  2BVH A;  5I1W A;  5I1V A;  5FXP A;  3W8W A;  1JRO A;  3KJM A;  4BBY A;  3LAE A;  3FWA A;  2BVF A;  1T3Q C;  3NVZ B;  2Q85 A;  2QKN A;  4PYT A;  1WVF A;  5G5H B;  1ZR6 A;  5K8E A;  3D2D A;  3EJD B;  1RM6 B;  4EC3 A;  1FIQ B;  1N62 C;  2VFR A;  3NRZ B;  3AN1 A;  1W1O A;  4BC7 A;  2NQW A;  1W1K A;  3JS8 A;  4XLO A;  3S1C A;  3TSJ A;  1MBT A;  2IPI A;  3NVW B;  1F0X A;  2RK5 A;  3W8X A;  4PVH A;  3DQ0 A;  1JRP A;  1FFV C;  1WVE A;  1VDV A;  2GQU A;  1DZN A;  3DED A;  2W3R A;  3TSH A;  4PWB A;  1QLT A;  4PVE A;  3BW7 A;  1FO4 A;  4PVJ A;  4MLA A;  4OAL A;  2P4P A;  5HMR A;  2WDW A;  3TX1 A;  3FW8 A;  5FXF A;  3VTE A;  2W55 A;  3HRD C;  2Y08 A;  5HHZ A;  3HSU A;  3FW9 A;  2VFT A;  3PQB A;  1W1L A;  2Q4W A;  1N5W C;  5L6F A;  5HQX A;  2R2Z A;  2Y3S A;  5D79 A;  1FFU C;  3GSY A;  3NVV B;  3NVY B;  4BC9 A;  3LLB A;  2O3G A;  4PWC A;  3EJE B;  1ZXI C;  2PLS A;  4PVK A;  1N63 C;  5AE2 A;  2OAI A;  4JAY A;  1E8H A;  3S1E A;  3EUB 3;  2GQT A;  2BVG A;  3SR6 B;  2W3S A;  4O95 A;  4HG0 A;  2R8D A;  1AHU A;  1AHZ A; 
#chains in the Genus database with same CATH homology
 4PZF A;  3AM9 A;  3S1D A;  3POP A;  4ZOH B;  2VFU A;  3RJA A;  4ML8 A;  1V97 A;  2P13 A;  1E0Y A;  1MBB A;  1QLU A;  2Y4G A;  1E8F A;  5ADZ A;  3D2J A;  2UUU A;  5AE1 A;  5L6G A;  3W8Z A;  1N5X A;  3AMZ A;  3C0P A;  1I19 A;  1W1M A;  4JB1 A;  5G5G B;  2E3T A;  2W54 A;  2P3H A;  3ETR B;  1UXY A;  3RJ8 A;  1AHV A;  3NS1 B;  4UD8 A;  2Y3R A;  3D2H A;  1W1Q A;  2AXR A;  1N61 C;  5AE3 A;  3S1F A;  4DNS A;  1N60 C;  2VAO A;  4BCA A;  1SB3 B;  1DII A;  1DIQ A;  2QPM A;  3PM9 A;  2UUV A;  1HSK A;  2VFV A;  2PLI A;  1W1R A;  1W1J A;  1W1S A;  2EXR A;  2YVS A;  1E8G A;  5FXE A;  3B9J B;  2MBR A;  1WYG A;  5FXD A;  1VAO A;  2I0K A;  3I99 A;  2VFS A;  5AWV A;  3FW7 A;  2BVH A;  5I1W A;  5I1V A;  5FXP A;  3W8W A;  1JRO A;  3KJM A;  4BBY A;  3LAE A;  3FWA A;  2BVF A;  1T3Q C;  3NVZ B;  2Q85 A;  2QKN A;  4PYT A;  1WVF A;  5G5H B;  1ZR6 A;  5K8E A;  3D2D A;  1RM6 B;  4EC3 A;  1FIQ B;  1N62 C;  2VFR A;  3NRZ B;  3AN1 A;  1W1O A;  4BC7 A;  2NQW A;  1W1K A;  3JS8 A;  4XLO A;  3S1C A;  3TSJ A;  1MBT A;  2IPI A;  3NVW B;  1F0X A;  2RK5 A;  3W8X A;  4PVH A;  3DQ0 A;  1JRP A;  1FFV C;  1WVE A;  1VDV A;  2GQU A;  1DZN A;  3DED A;  2W3R A;  3TSH A;  4PWB A;  1QLT A;  4PVE A;  3BW7 A;  1FO4 A;  4PVJ A;  4MLA A;  4OAL A;  2P4P A;  5HMR A;  2WDW A;  3TX1 A;  3FW8 A;  5FXF A;  3VTE A;  2W55 A;  3HRD C;  2Y08 A;  5HHZ A;  3HSU A;  3FW9 A;  2VFT A;  3PQB A;  1W1L A;  2Q4W A;  1N5W C;  5L6F A;  5HQX A;  2R2Z A;  2Y3S A;  5D79 A;  1FFU C;  3GSY A;  3NVV B;  4BC9 A;  3NVY B;  3LLB A;  2O3G A;  4PWC A;  1ZXI C;  2PLS A;  4PVK A;  1N63 C;  5AE2 A;  2OAI A;  4JAY A;  1E8H A;  3S1E A;  3EUB 3;  2GQT A;  2BVG A;  3SR6 B;  2W3S A;  4O95 A;  4HG0 A;  2R8D A;  1AHU A;  1AHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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