4ML8A

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
488
structure length
488
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPVQASHFQSDGRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Zea mays
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
molecule keywords Cytokinin oxidase 2
total genus 150
structure length 488
sequence length 488
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ml8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ml8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4ml8A03
1E8HA 1N5WC 3B9JB 2MBRA 4ZOHB 1N63C 2E3TA 1FFUC 1ZXIC 2VFVA 2YVSA 2NQWA 4JAYA 1WYGA 3VTEA 1FO4A 5FXEA 2VFRA 3NS1B 1N61C 1AHUA 2P4PA 1E8GA 1UXYA 3I99A 4UD8A 3DQ0A 4MLAA 2GQTA 1V97A 2VFTA 1N5XA 3TX1A 1F0XA 1W1MA 3W8ZA 5AE3A 2W3SA 4DNSA 4PVKA 3FW7A 2W54A 3S1EA 4BCAA 3NRZB 1E8FA 3D2JA 3JS8A 1W1LA 3TSHA 2I0KA 1QLUA 3LAEA 2BVFA 1DIIA 4PWBA 2R2ZA 3NVYB 4EC3A 1SB3B 3NVWB 2O3GA 3W8XA 3LLBA 5G5HB 4OALA 1AHVA 1DIQA 2VFSA 4BC7A 1MBTA 2BVHA 3D2DA 3HRDC 1W1KA 3NVZB 3W8WA 3NVVB 1FFVC 5HHZA 3KJMA 2QPMA 2P13A 1HSKA 2PLSA 3SR6B 3AMZA 3FWAA 3S1DA 1VAOA 1W1JA 3PM9A 1N60C 2Q4WA 3S1CA 1MBBA 2W55A 3AM9A 5HMRA 1T3QC 2EXRA 4JB1A 4ML8A 2OAIA 2QKNA 3C0PA 1JROA 5FXPA 1JRPA 2RK5A 4XLOA 3FW9A 1W1OA 5FXDA 1N62C 3BW7A 1FIQB 3FW8A 3TSJA 2P3HA 3ETRB 5FXFA 1QLTA 3GSYA 2GQUA 5D79A 1ZR6A 3AN1A 5HQXA 2R8DA 1AHZA 1W1SA 4HG0A 2BVGA 1E0YA 4PWCA 1W1RA 2VFUA 1W1QA 5AE2A 5G5GB 2W3RA 4BBYA 2VAOA 1RM6B 3D2HA 1DZNA 3EUB3 4PVHA 4PVJA 2AXRA 3S1FA 1VDVA 4BC9A 4PVEA 1WVFA 1WVEA 2Q85A 3DEDA 4PYTA 4O95A 4PZFA 5ADZA 1I19A 2PLIA 5AE1A
chains in the Genus database with same CATH superfamily
1E8HA 1N5WC 3B9JB 2MBRA 3EJEB 1N63C 2E3TA 1FFUC 4ZOHB 1ZXIC 2Y08A 2VFVA 2YVSA 2NQWA 4JAYA 1WYGA 3VTEA 1FO4A 5FXEA 2VFRA 3NS1B 1N61C 1AHUA 2P4PA 1E8GA 1UXYA 5L6FA 3I99A 4UD8A 3DQ0A 5I1VA 4MLAA 2GQTA 1V97A 2VFTA 1N5XA 3TX1A 1F0XA 3EJDB 1W1MA 3W8ZA 5L6GA 5AE3A 2W3SA 4DNSA 4PVKA 3FW7A 2W54A 3S1EA 4BCAA 3NRZB 1E8FA 3D2JA 3JS8A 1W1LA 3TSHA 2I0KA 1QLUA 3LAEA 2BVFA 1DIIA 4PWBA 2R2ZA 3NVYB 4EC3A 1SB3B 2UUVA 3HSUA 3NVWB 2O3GA 2Y3SA 3W8XA 3LLBA 5G5HB 4OALA 1AHVA 1DIQA 2VFSA 4BC7A 1MBTA 2BVHA 3PQBA 3D2DA 3HRDC 1W1KA 3NVZB 3W8WA 3NVVB 1FFVC 5HHZA 3KJMA 2QPMA 2P13A 1HSKA 2PLSA 3SR6B 3AMZA 3FWAA 2IPIA 3S1DA 1VAOA 1W1JA 3PM9A 1N60C 2Q4WA 3S1CA 2UUUA 1MBBA 2W55A 3AM9A 5HMRA 1T3QC 2EXRA 4JB1A 4ML8A 2OAIA 2QKNA 3C0PA 3RJ8A 1JROA 5FXPA 1JRPA 2RK5A 4XLOA 5K8EA 3FW9A 1W1OA 5FXDA 1N62C 3BW7A 1FIQB 3FW8A 3TSJA 2P3HA 2Y3RA 3ETRB 5FXFA 1QLTA 3GSYA 5AWVA 2GQUA 5I1WA 5D79A 1ZR6A 3AN1A 2Y4GA 3RJAA 5HQXA 2R8DA 1AHZA 1W1SA 4HG0A 2BVGA 1E0YA 4PWCA 1W1RA 2VFUA 1W1QA 5AE2A 5G5GB 2W3RA 4BBYA 2VAOA 1RM6B 3D2HA 3POPA 1DZNA 3EUB3 4PVHA 4PVJA 2AXRA 3S1FA 1VDVA 4BC9A 4PVEA 1WVFA 1WVEA 2Q85A 3EJBB 3DEDA 4PYTA 4O95A 4PZFA 5ADZA 1I19A 2PLIA 2WDWA 5AE1A
chains in the Genus database with same CATH topology
1E8HA 1N5WC 3B9JB 2MBRA 4ZOHB 1N63C 2E3TA 1FFUC 1ZXIC 2Y08A 2VFVA 2YVSA 2NQWA 4JAYA 1WYGA 3VTEA 1FO4A 5FXEA 2VFRA 3NS1B 1N61C 1AHUA 2P4PA 1E8GA 1UXYA 5L6FA 3I99A 4UD8A 3DQ0A 5I1VA 4MLAA 2GQTA 1V97A 2VFTA 1N5XA 3TX1A 1F0XA 1W1MA 3W8ZA 5L6GA 5AE3A 2W3SA 4DNSA 4PVKA 3FW7A 2W54A 3S1EA 4BCAA 3NRZB 1E8FA 3D2JA 3JS8A 1W1LA 3TSHA 2I0KA 1QLUA 3LAEA 2BVFA 1DIIA 4PWBA 2R2ZA 3NVYB 4EC3A 1SB3B 2UUVA 3HSUA 3NVWB 2O3GA 2Y3SA 3W8XA 3LLBA 5G5HB 4OALA 1AHVA 1DIQA 2VFSA 4BC7A 1MBTA 2BVHA 3PQBA 3D2DA 3HRDC 1W1KA 3NVZB 3W8WA 3NVVB 1FFVC 5HHZA 3KJMA 2QPMA 2P13A 1HSKA 2PLSA 3SR6B 3AMZA 3FWAA 2IPIA 3S1DA 1VAOA 1W1JA 3PM9A 1N60C 2Q4WA 3S1CA 2UUUA 1MBBA 2W55A 3AM9A 5HMRA 1T3QC 2EXRA 4JB1A 4ML8A 2OAIA 2QKNA 3C0PA 3RJ8A 1JROA 5FXPA 1JRPA 2RK5A 4XLOA 5K8EA 3FW9A 1W1OA 5FXDA 1N62C 3BW7A 1FIQB 3FW8A 3TSJA 2P3HA 2Y3RA 3ETRB 5FXFA 1QLTA 3GSYA 5AWVA 2GQUA 5I1WA 5D79A 1ZR6A 3AN1A 2Y4GA 3RJAA 5HQXA 2R8DA 1AHZA 1W1SA 4HG0A 2BVGA 1E0YA 4PWCA 1W1RA 2VFUA 1W1QA 5AE2A 5G5GB 2W3RA 4BBYA 2VAOA 1RM6B 3D2HA 3POPA 1DZNA 3EUB3 4PVHA 4PVJA 2AXRA 3S1FA 1VDVA 4BC9A 4PVEA 1WVFA 1WVEA 2Q85A 3DEDA 4PYTA 4O95A 4PZFA 5ADZA 1I19A 2PLIA 2WDWA 5AE1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E8H A;  1N5W C;  3B9J B;  2MBR A;  4ZOH B;  1N63 C;  2E3T A;  1FFU C;  1ZXI C;  2VFV A;  2YVS A;  2NQW A;  4JAY A;  1WYG A;  3VTE A;  1FO4 A;  5FXE A;  2VFR A;  3NS1 B;  1N61 C;  1AHU A;  2P4P A;  1E8G A;  1UXY A;  3I99 A;  4UD8 A;  3DQ0 A;  4MLA A;  2GQT A;  1V97 A;  2VFT A;  1N5X A;  3TX1 A;  1F0X A;  1W1M A;  3W8Z A;  5AE3 A;  2W3S A;  4DNS A;  4PVK A;  3FW7 A;  2W54 A;  3S1E A;  4BCA A;  3NRZ B;  1E8F A;  3D2J A;  3JS8 A;  1W1L A;  3TSH A;  2I0K A;  1QLU A;  3LAE A;  2BVF A;  1DII A;  4PWB A;  2R2Z A;  3NVY B;  4EC3 A;  1SB3 B;  3NVW B;  2O3G A;  3W8X A;  3LLB A;  5G5H B;  4OAL A;  1AHV A;  1DIQ A;  2VFS A;  4BC7 A;  1MBT A;  2BVH A;  3D2D A;  3HRD C;  1W1K A;  3NVZ B;  3W8W A;  3NVV B;  1FFV C;  5HHZ A;  3KJM A;  2QPM A;  2P13 A;  1HSK A;  2PLS A;  3SR6 B;  3AMZ A;  3FWA A;  3S1D A;  1VAO A;  1W1J A;  3PM9 A;  1N60 C;  2Q4W A;  3S1C A;  1MBB A;  2W55 A;  3AM9 A;  5HMR A;  1T3Q C;  2EXR A;  4JB1 A;  4ML8 A;  2OAI A;  2QKN A;  3C0P A;  1JRO A;  5FXP A;  1JRP A;  2RK5 A;  4XLO A;  3FW9 A;  1W1O A;  5FXD A;  1N62 C;  3BW7 A;  1FIQ B;  3FW8 A;  3TSJ A;  2P3H A;  3ETR B;  5FXF A;  1QLT A;  3GSY A;  2GQU A;  5D79 A;  1ZR6 A;  3AN1 A;  5HQX A;  2R8D A;  1AHZ A;  1W1S A;  4HG0 A;  2BVG A;  1E0Y A;  4PWC A;  1W1R A;  2VFU A;  1W1Q A;  5AE2 A;  5G5G B;  2W3R A;  4BBY A;  2VAO A;  1RM6 B;  3D2H A;  1DZN A;  3EUB 3;  4PVH A;  4PVJ A;  2AXR A;  3S1F A;  1VDV A;  4BC9 A;  4PVE A;  1WVF A;  1WVE A;  2Q85 A;  3DED A;  4PYT A;  4O95 A;  4PZF A;  5ADZ A;  1I19 A;  2PLI A;  5AE1 A; 
#chains in the Genus database with same CATH topology
 1E8H A;  1N5W C;  3B9J B;  2MBR A;  3EJE B;  1N63 C;  2E3T A;  1FFU C;  4ZOH B;  1ZXI C;  2Y08 A;  2VFV A;  2YVS A;  2NQW A;  4JAY A;  1WYG A;  3VTE A;  1FO4 A;  5FXE A;  2VFR A;  3NS1 B;  1N61 C;  1AHU A;  2P4P A;  1E8G A;  1UXY A;  5L6F A;  3I99 A;  4UD8 A;  3DQ0 A;  5I1V A;  4MLA A;  2GQT A;  1V97 A;  2VFT A;  1N5X A;  3TX1 A;  1F0X A;  3EJD B;  1W1M A;  3W8Z A;  5L6G A;  5AE3 A;  2W3S A;  4DNS A;  4PVK A;  3FW7 A;  2W54 A;  3S1E A;  4BCA A;  3NRZ B;  1E8F A;  3D2J A;  3JS8 A;  1W1L A;  3TSH A;  2I0K A;  1QLU A;  3LAE A;  2BVF A;  1DII A;  4PWB A;  2R2Z A;  3NVY B;  4EC3 A;  1SB3 B;  2UUV A;  3HSU A;  3NVW B;  2O3G A;  2Y3S A;  3W8X A;  3LLB A;  5G5H B;  4OAL A;  1AHV A;  1DIQ A;  2VFS A;  4BC7 A;  1MBT A;  2BVH A;  3PQB A;  3D2D A;  3HRD C;  1W1K A;  3NVZ B;  3W8W A;  3NVV B;  1FFV C;  5HHZ A;  3KJM A;  2QPM A;  2P13 A;  1HSK A;  2PLS A;  3SR6 B;  3AMZ A;  3FWA A;  2IPI A;  3S1D A;  1VAO A;  1W1J A;  3PM9 A;  1N60 C;  2Q4W A;  3S1C A;  2UUU A;  1MBB A;  2W55 A;  3AM9 A;  5HMR A;  1T3Q C;  2EXR A;  4JB1 A;  4ML8 A;  2OAI A;  2QKN A;  3C0P A;  3RJ8 A;  1JRO A;  5FXP A;  1JRP A;  2RK5 A;  4XLO A;  5K8E A;  3FW9 A;  1W1O A;  5FXD A;  1N62 C;  3BW7 A;  1FIQ B;  3FW8 A;  3TSJ A;  2P3H A;  2Y3R A;  3ETR B;  5FXF A;  1QLT A;  3GSY A;  5AWV A;  2GQU A;  5I1W A;  5D79 A;  1ZR6 A;  3AN1 A;  2Y4G A;  3RJA A;  5HQX A;  2R8D A;  1AHZ A;  1W1S A;  4HG0 A;  2BVG A;  1E0Y A;  4PWC A;  1W1R A;  2VFU A;  1W1Q A;  5AE2 A;  5G5G B;  2W3R A;  4BBY A;  2VAO A;  1RM6 B;  3D2H A;  3POP A;  1DZN A;  3EUB 3;  4PVH A;  4PVJ A;  2AXR A;  3S1F A;  1VDV A;  4BC9 A;  4PVE A;  1WVF A;  1WVE A;  2Q85 A;  3EJB B;  3DED A;  4PYT A;  4O95 A;  4PZF A;  5ADZ A;  1I19 A;  2PLI A;  2WDW A;  5AE1 A; 
#chains in the Genus database with same CATH homology
 1E8H A;  1N5W C;  3B9J B;  2MBR A;  4ZOH B;  1N63 C;  2E3T A;  1FFU C;  1ZXI C;  2Y08 A;  2VFV A;  2YVS A;  2NQW A;  4JAY A;  1WYG A;  3VTE A;  1FO4 A;  5FXE A;  2VFR A;  3NS1 B;  1N61 C;  1AHU A;  2P4P A;  1E8G A;  1UXY A;  5L6F A;  3I99 A;  4UD8 A;  3DQ0 A;  5I1V A;  4MLA A;  2GQT A;  1V97 A;  2VFT A;  1N5X A;  3TX1 A;  1F0X A;  1W1M A;  3W8Z A;  5L6G A;  5AE3 A;  2W3S A;  4DNS A;  4PVK A;  3FW7 A;  2W54 A;  3S1E A;  4BCA A;  3NRZ B;  1E8F A;  3D2J A;  3JS8 A;  1W1L A;  3TSH A;  2I0K A;  1QLU A;  3LAE A;  2BVF A;  1DII A;  4PWB A;  2R2Z A;  3NVY B;  4EC3 A;  1SB3 B;  2UUV A;  3HSU A;  3NVW B;  2O3G A;  2Y3S A;  3W8X A;  3LLB A;  5G5H B;  4OAL A;  1AHV A;  1DIQ A;  2VFS A;  4BC7 A;  1MBT A;  2BVH A;  3PQB A;  3D2D A;  3HRD C;  1W1K A;  3NVZ B;  3W8W A;  3NVV B;  1FFV C;  5HHZ A;  3KJM A;  2QPM A;  2P13 A;  1HSK A;  2PLS A;  3SR6 B;  3AMZ A;  3FWA A;  2IPI A;  3S1D A;  1VAO A;  1W1J A;  3PM9 A;  1N60 C;  2Q4W A;  3S1C A;  2UUU A;  1MBB A;  2W55 A;  3AM9 A;  5HMR A;  1T3Q C;  2EXR A;  4JB1 A;  4ML8 A;  2OAI A;  2QKN A;  3C0P A;  3RJ8 A;  1JRO A;  5FXP A;  1JRP A;  2RK5 A;  4XLO A;  5K8E A;  3FW9 A;  1W1O A;  5FXD A;  1N62 C;  3BW7 A;  1FIQ B;  3FW8 A;  3TSJ A;  2P3H A;  2Y3R A;  3ETR B;  5FXF A;  1QLT A;  3GSY A;  5AWV A;  2GQU A;  5I1W A;  5D79 A;  1ZR6 A;  3AN1 A;  2Y4G A;  3RJA A;  5HQX A;  2R8D A;  1AHZ A;  1W1S A;  4HG0 A;  2BVG A;  1E0Y A;  4PWC A;  1W1R A;  2VFU A;  1W1Q A;  5AE2 A;  5G5G B;  2W3R A;  4BBY A;  2VAO A;  1RM6 B;  3D2H A;  3POP A;  1DZN A;  3EUB 3;  4PVH A;  4PVJ A;  2AXR A;  3S1F A;  1VDV A;  4BC9 A;  4PVE A;  1WVF A;  1WVE A;  2Q85 A;  3DED A;  4PYT A;  4O95 A;  4PZF A;  5ADZ A;  1I19 A;  2PLI A;  2WDW A;  5AE1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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