4ML8A

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
488
structure length
488
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPVQASHFQSDGRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin oxidase 2
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
total genus 150
structure length 488
sequence length 488
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ml8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ml8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4ml8A03
4PWBA 3NVYB 2BVGA 3HRDC 2W54A 1WYGA 2VFVA 3I99A 1AHVA 4HG0A 3D2DA 3TX1A 1N63C 1W1MA 3KJMA 2BVHA 1UXYA 1DIIA 4BCAA 3ETRB 4DNSA 2I0KA 4PZFA 3D2JA 2R8DA 3NVWB 1N5WC 2EXRA 5ADZA 4ML8A 1FFVC 4UD8A 3TSHA 2P3HA 1W1QA 4JB1A 5AE1A 1T3QC 4BBYA 3S1CA 4BC7A 1HSKA 3NVZB 2QPMA 1JROA 3VTEA 1W1RA 2VFUA 1W1LA 1FIQB 3AM9A 5HQXA 3NS1B 3NRZB 1E8FA 3FW8A 2Q4WA 3AMZA 3EUB3 3SR6B 2YVSA 2W3RA 2O3GA 1AHZA 4MLAA 3S1EA 1WVEA 2Q85A 3DQ0A 5HHZA 2W55A 3FWAA 3W8WA 5FXDA 3DEDA 1N61C 3GSYA 2OAIA 2PLIA 1ZXIC 5FXEA 1JRPA 2R2ZA 1DZNA 3B9JB 1MBBA 3PM9A 1N62C 1RM6B 1AHUA 3NVVB 1WVFA 5FXPA 2VFRA 5AE3A 2NQWA 1E0YA 1QLUA 2BVFA 1W1SA 5FXFA 3W8XA 2P13A 1V97A 5AE2A 1F0XA 3S1DA 2MBRA 2GQTA 4ZOHB 2QKNA 3S1FA 1E8HA 4BC9A 4PVJA 5G5HB 1QLTA 1E8GA 4PVEA 4JAYA 4PWCA 1N5XA 3D2HA 3LAEA 5G5GB 3C0PA 1W1JA 1FFUC 1W1OA 2W3SA 1MBTA 3AN1A 1VDVA 4XLOA 3W8ZA 2GQUA 3FW7A 1DIQA 3TSJA 2PLSA 3LLBA 1VAOA 2P4PA 2RK5A 5HMRA 3BW7A 2AXRA 1W1KA 4PYTA 4O95A 3FW9A 5D79A 1SB3B 4EC3A 3JS8A 2VFSA 1FO4A 2VFTA 4PVHA 2VAOA 4OALA 2E3TA 1I19A 4PVKA 1N60C 1ZR6A
chains in the Genus database with same CATH superfamily
5L6FA 3NVYB 4PWBA 2BVGA 2Y3RA 3HRDC 2W54A 1WYGA 2VFVA 3I99A 1AHVA 4HG0A 3D2DA 3TX1A 1N63C 1W1MA 3KJMA 2BVHA 1UXYA 1DIIA 4BCAA 3ETRB 4DNSA 2I0KA 4PZFA 3D2JA 3NVWB 2R8DA 1N5WC 2EXRA 5ADZA 4ML8A 1FFVC 4UD8A 3TSHA 2P3HA 1W1QA 4JB1A 5AE1A 1T3QC 4BBYA 3S1CA 4BC7A 1HSKA 3HSUA 3NVZB 2QPMA 1JROA 3VTEA 1W1RA 2VFUA 3POPA 1W1LA 1FIQB 3AM9A 5HQXA 3NS1B 3EJBB 3NRZB 1E8FA 3EJDB 3FW8A 2Q4WA 3AMZA 3EUB3 3SR6B 2YVSA 2W3RA 2O3GA 1AHZA 4MLAA 3EJEB 3S1EA 5AWVA 5I1VA 1WVEA 2Q85A 3DQ0A 2IPIA 5HHZA 2W55A 3FWAA 3W8WA 5FXDA 3DEDA 1N61C 2Y08A 3GSYA 2OAIA 2PLIA 1ZXIC 5FXEA 1JRPA 2R2ZA 1DZNA 3B9JB 1MBBA 3PM9A 1N62C 1RM6B 1AHUA 3NVVB 1WVFA 5FXPA 2VFRA 5AE3A 2NQWA 5L6GA 1E0YA 1QLUA 2BVFA 1W1SA 5FXFA 3W8XA 2P13A 1V97A 5AE2A 1F0XA 3S1DA 2MBRA 2GQTA 4ZOHB 2QKNA 3S1FA 1E8HA 4BC9A 4PVJA 2UUVA 5G5HB 1QLTA 1E8GA 5K8EA 4PVEA 4JAYA 4PWCA 1N5XA 2UUUA 3D2HA 3LAEA 2Y3SA 5G5GB 2Y4GA 3RJAA 3C0PA 1W1JA 1FFUC 1W1OA 2W3SA 1MBTA 3AN1A 1VDVA 4XLOA 3W8ZA 2GQUA 3FW7A 2WDWA 1DIQA 3TSJA 2PLSA 3LLBA 1VAOA 2P4PA 2RK5A 5HMRA 3BW7A 3PQBA 2AXRA 1W1KA 4PYTA 4O95A 3FW9A 5D79A 1SB3B 4EC3A 3RJ8A 3JS8A 2VFSA 1FO4A 2VFTA 4PVHA 2VAOA 4OALA 2E3TA 1I19A 4PVKA 5I1WA 1N60C 1ZR6A
chains in the Genus database with same CATH topology
5L6FA 4PWBA 2Y3RA 2BVGA 3NVYB 3HRDC 2W54A 1WYGA 2VFVA 3I99A 1AHVA 4HG0A 3D2DA 3TX1A 1N63C 1W1MA 3KJMA 2BVHA 1UXYA 1DIIA 4BCAA 3ETRB 4DNSA 2I0KA 4PZFA 3D2JA 2R8DA 3NVWB 1N5WC 2EXRA 5ADZA 4ML8A 1FFVC 4UD8A 3TSHA 2P3HA 1W1QA 4JB1A 5AE1A 1T3QC 4BBYA 3S1CA 4BC7A 1HSKA 3HSUA 3NVZB 2QPMA 1JROA 3VTEA 1W1RA 2VFUA 3POPA 1W1LA 1FIQB 3AM9A 5HQXA 3NS1B 3NRZB 1E8FA 3FW8A 2Q4WA 3AMZA 3EUB3 3SR6B 2YVSA 2W3RA 2O3GA 1AHZA 4MLAA 3S1EA 5AWVA 5I1VA 1WVEA 2Q85A 3DQ0A 2IPIA 5HHZA 2W55A 3FWAA 3W8WA 5FXDA 3DEDA 1N61C 2Y08A 3GSYA 2OAIA 2PLIA 1ZXIC 5FXEA 1JRPA 2R2ZA 1DZNA 3B9JB 1MBBA 3PM9A 1N62C 1RM6B 1AHUA 3NVVB 1WVFA 5FXPA 2VFRA 5AE3A 2NQWA 5L6GA 1E0YA 1QLUA 2BVFA 1W1SA 5FXFA 3W8XA 2P13A 1V97A 5AE2A 1F0XA 3S1DA 2MBRA 2GQTA 4ZOHB 2QKNA 3S1FA 1E8HA 4BC9A 4PVJA 2UUVA 5G5HB 1QLTA 1E8GA 5K8EA 4PVEA 4JAYA 4PWCA 1N5XA 2UUUA 3D2HA 3LAEA 2Y3SA 5G5GB 2Y4GA 3RJAA 3C0PA 1W1JA 1FFUC 1W1OA 2W3SA 1MBTA 3AN1A 1VDVA 4XLOA 3W8ZA 2GQUA 3FW7A 2WDWA 1DIQA 3TSJA 2PLSA 3LLBA 1VAOA 2P4PA 2RK5A 5HMRA 3BW7A 3PQBA 2AXRA 1W1KA 4PYTA 4O95A 3FW9A 5D79A 1SB3B 4EC3A 3RJ8A 3JS8A 2VFSA 1FO4A 2VFTA 4PVHA 2VAOA 4OALA 2E3TA 1I19A 4PVKA 5I1WA 1N60C 1ZR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PWB A;  3NVY B;  2BVG A;  3HRD C;  2W54 A;  1WYG A;  2VFV A;  3I99 A;  1AHV A;  4HG0 A;  3D2D A;  3TX1 A;  1N63 C;  1W1M A;  3KJM A;  2BVH A;  1UXY A;  1DII A;  4BCA A;  3ETR B;  4DNS A;  2I0K A;  4PZF A;  3D2J A;  2R8D A;  3NVW B;  1N5W C;  2EXR A;  5ADZ A;  4ML8 A;  1FFV C;  4UD8 A;  3TSH A;  2P3H A;  1W1Q A;  4JB1 A;  5AE1 A;  1T3Q C;  4BBY A;  3S1C A;  4BC7 A;  1HSK A;  3NVZ B;  2QPM A;  1JRO A;  3VTE A;  1W1R A;  2VFU A;  1W1L A;  1FIQ B;  3AM9 A;  5HQX A;  3NS1 B;  3NRZ B;  1E8F A;  3FW8 A;  2Q4W A;  3AMZ A;  3EUB 3;  3SR6 B;  2YVS A;  2W3R A;  2O3G A;  1AHZ A;  4MLA A;  3S1E A;  1WVE A;  2Q85 A;  3DQ0 A;  5HHZ A;  2W55 A;  3FWA A;  3W8W A;  5FXD A;  3DED A;  1N61 C;  3GSY A;  2OAI A;  2PLI A;  1ZXI C;  5FXE A;  1JRP A;  2R2Z A;  1DZN A;  3B9J B;  1MBB A;  3PM9 A;  1N62 C;  1RM6 B;  1AHU A;  3NVV B;  1WVF A;  5FXP A;  2VFR A;  5AE3 A;  2NQW A;  1E0Y A;  1QLU A;  2BVF A;  1W1S A;  5FXF A;  3W8X A;  2P13 A;  1V97 A;  5AE2 A;  1F0X A;  3S1D A;  2MBR A;  2GQT A;  4ZOH B;  2QKN A;  3S1F A;  1E8H A;  4BC9 A;  4PVJ A;  5G5H B;  1QLT A;  1E8G A;  4PVE A;  4JAY A;  4PWC A;  1N5X A;  3D2H A;  3LAE A;  5G5G B;  3C0P A;  1W1J A;  1FFU C;  1W1O A;  2W3S A;  1MBT A;  3AN1 A;  1VDV A;  4XLO A;  3W8Z A;  2GQU A;  3FW7 A;  1DIQ A;  3TSJ A;  2PLS A;  3LLB A;  1VAO A;  2P4P A;  2RK5 A;  5HMR A;  3BW7 A;  2AXR A;  1W1K A;  4PYT A;  4O95 A;  3FW9 A;  5D79 A;  1SB3 B;  4EC3 A;  3JS8 A;  2VFS A;  1FO4 A;  2VFT A;  4PVH A;  2VAO A;  4OAL A;  2E3T A;  1I19 A;  4PVK A;  1N60 C;  1ZR6 A; 
#chains in the Genus database with same CATH topology
 5L6F A;  3NVY B;  4PWB A;  2BVG A;  2Y3R A;  3HRD C;  2W54 A;  1WYG A;  2VFV A;  3I99 A;  1AHV A;  4HG0 A;  3D2D A;  3TX1 A;  1N63 C;  1W1M A;  3KJM A;  2BVH A;  1UXY A;  1DII A;  4BCA A;  3ETR B;  4DNS A;  2I0K A;  4PZF A;  3D2J A;  3NVW B;  2R8D A;  1N5W C;  2EXR A;  5ADZ A;  4ML8 A;  1FFV C;  4UD8 A;  3TSH A;  2P3H A;  1W1Q A;  4JB1 A;  5AE1 A;  1T3Q C;  4BBY A;  3S1C A;  4BC7 A;  1HSK A;  3HSU A;  3NVZ B;  2QPM A;  1JRO A;  3VTE A;  1W1R A;  2VFU A;  3POP A;  1W1L A;  1FIQ B;  3AM9 A;  5HQX A;  3NS1 B;  3EJB B;  3NRZ B;  1E8F A;  3EJD B;  3FW8 A;  2Q4W A;  3AMZ A;  3EUB 3;  3SR6 B;  2YVS A;  2W3R A;  2O3G A;  1AHZ A;  4MLA A;  3EJE B;  3S1E A;  5AWV A;  5I1V A;  1WVE A;  2Q85 A;  3DQ0 A;  2IPI A;  5HHZ A;  2W55 A;  3FWA A;  3W8W A;  5FXD A;  3DED A;  1N61 C;  2Y08 A;  3GSY A;  2OAI A;  2PLI A;  1ZXI C;  5FXE A;  1JRP A;  2R2Z A;  1DZN A;  3B9J B;  1MBB A;  3PM9 A;  1N62 C;  1RM6 B;  1AHU A;  3NVV B;  1WVF A;  5FXP A;  2VFR A;  5AE3 A;  2NQW A;  5L6G A;  1E0Y A;  1QLU A;  2BVF A;  1W1S A;  5FXF A;  3W8X A;  2P13 A;  1V97 A;  5AE2 A;  1F0X A;  3S1D A;  2MBR A;  2GQT A;  4ZOH B;  2QKN A;  3S1F A;  1E8H A;  4BC9 A;  4PVJ A;  2UUV A;  5G5H B;  1QLT A;  1E8G A;  5K8E A;  4PVE A;  4JAY A;  4PWC A;  1N5X A;  2UUU A;  3D2H A;  3LAE A;  2Y3S A;  5G5G B;  2Y4G A;  3RJA A;  3C0P A;  1W1J A;  1FFU C;  1W1O A;  2W3S A;  1MBT A;  3AN1 A;  1VDV A;  4XLO A;  3W8Z A;  2GQU A;  3FW7 A;  2WDW A;  1DIQ A;  3TSJ A;  2PLS A;  3LLB A;  1VAO A;  2P4P A;  2RK5 A;  5HMR A;  3BW7 A;  3PQB A;  2AXR A;  1W1K A;  4PYT A;  4O95 A;  3FW9 A;  5D79 A;  1SB3 B;  4EC3 A;  3RJ8 A;  3JS8 A;  2VFS A;  1FO4 A;  2VFT A;  4PVH A;  2VAO A;  4OAL A;  2E3T A;  1I19 A;  4PVK A;  5I1W A;  1N60 C;  1ZR6 A; 
#chains in the Genus database with same CATH homology
 5L6F A;  4PWB A;  2Y3R A;  2BVG A;  3NVY B;  3HRD C;  2W54 A;  1WYG A;  2VFV A;  3I99 A;  1AHV A;  4HG0 A;  3D2D A;  3TX1 A;  1N63 C;  1W1M A;  3KJM A;  2BVH A;  1UXY A;  1DII A;  4BCA A;  3ETR B;  4DNS A;  2I0K A;  4PZF A;  3D2J A;  2R8D A;  3NVW B;  1N5W C;  2EXR A;  5ADZ A;  4ML8 A;  1FFV C;  4UD8 A;  3TSH A;  2P3H A;  1W1Q A;  4JB1 A;  5AE1 A;  1T3Q C;  4BBY A;  3S1C A;  4BC7 A;  1HSK A;  3HSU A;  3NVZ B;  2QPM A;  1JRO A;  3VTE A;  1W1R A;  2VFU A;  3POP A;  1W1L A;  1FIQ B;  3AM9 A;  5HQX A;  3NS1 B;  3NRZ B;  1E8F A;  3FW8 A;  2Q4W A;  3AMZ A;  3EUB 3;  3SR6 B;  2YVS A;  2W3R A;  2O3G A;  1AHZ A;  4MLA A;  3S1E A;  5AWV A;  5I1V A;  1WVE A;  2Q85 A;  3DQ0 A;  2IPI A;  5HHZ A;  2W55 A;  3FWA A;  3W8W A;  5FXD A;  3DED A;  1N61 C;  2Y08 A;  3GSY A;  2OAI A;  2PLI A;  1ZXI C;  5FXE A;  1JRP A;  2R2Z A;  1DZN A;  3B9J B;  1MBB A;  3PM9 A;  1N62 C;  1RM6 B;  1AHU A;  3NVV B;  1WVF A;  5FXP A;  2VFR A;  5AE3 A;  2NQW A;  5L6G A;  1E0Y A;  1QLU A;  2BVF A;  1W1S A;  5FXF A;  3W8X A;  2P13 A;  1V97 A;  5AE2 A;  1F0X A;  3S1D A;  2MBR A;  2GQT A;  4ZOH B;  2QKN A;  3S1F A;  1E8H A;  4BC9 A;  4PVJ A;  2UUV A;  5G5H B;  1QLT A;  1E8G A;  5K8E A;  4PVE A;  4JAY A;  4PWC A;  1N5X A;  2UUU A;  3D2H A;  3LAE A;  2Y3S A;  5G5G B;  2Y4G A;  3RJA A;  3C0P A;  1W1J A;  1FFU C;  1W1O A;  2W3S A;  1MBT A;  3AN1 A;  1VDV A;  4XLO A;  3W8Z A;  2GQU A;  3FW7 A;  2WDW A;  1DIQ A;  3TSJ A;  2PLS A;  3LLB A;  1VAO A;  2P4P A;  2RK5 A;  5HMR A;  3BW7 A;  3PQB A;  2AXR A;  1W1K A;  4PYT A;  4O95 A;  3FW9 A;  5D79 A;  1SB3 B;  4EC3 A;  3RJ8 A;  3JS8 A;  2VFS A;  1FO4 A;  2VFT A;  4PVH A;  2VAO A;  4OAL A;  2E3T A;  1I19 A;  4PVK A;  5I1W A;  1N60 C;  1ZR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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