4ML8A

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
488
structure length
488
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPVQASHFQSDGRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
molecule keywords Cytokinin oxidase 2
source organism Zea mays
molecule tags Oxidoreductase
total genus 150
structure length 488
sequence length 488
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ml8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ml8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4ml8A03
3FW9A 1FIQB 5FXPA 3W8WA 2W3RA 3NRZB 3FW7A 3GSYA 1W1JA 2BVGA 4BC9A 5FXDA 3NVYB 1V97A 4BC7A 5FXEA 1FFVC 2Q4WA 3S1CA 3SR6B 1WVEA 3S1EA 1VDVA 3S1DA 3HRDC 1N62C 5AE1A 3TX1A 2NQWA 1W1MA 3D2HA 2GQUA 1VAOA 2BVHA 2QPMA 4PZFA 2VAOA 1HSKA 5FXFA 4PYTA 3EUB3 3KJMA 4JB1A 5G5GB 3NVVB 1W1OA 4ZOHB 4OALA 2R8DA 3NVZB 5HQXA 2E3TA 1E8HA 1W1LA 1JRPA 2VFUA 1W1RA 1QLUA 3C0PA 2VFSA 5AE2A 2GQTA 1WYGA 2O3GA 1MBBA 2Q85A 3TSJA 1QLTA 1DIQA 4PVEA 1I19A 1N5WC 4UD8A 2P13A 2VFTA 4O95A 1N60C 4PWBA 2W55A 5HHZA 3LLBA 5G5HB 3LAEA 1DZNA 1W1KA 3AM9A 1E8FA 3NS1B 2OAIA 3FWAA 1F0XA 1AHVA 1ZR6A 3ETRB 4EC3A 1MBTA 3B9JB 1FFUC 1AHZA 1W1SA 2BVFA 4JAYA 3FW8A 2RK5A 1E8GA 4BBYA 1SB3B 3S1FA 1DIIA 2PLIA 3D2JA 2AXRA 2YVSA 4PVJA 1RM6B 1AHUA 2MBRA 4PWCA 4PVHA 1UXYA 3W8XA 1T3QC 5HMRA 3DQ0A 3DEDA 2R2ZA 5ADZA 3TSHA 1JROA 3PM9A 2P3HA 4ML8A 1N5XA 3W8ZA 3I99A 4MLAA 3NVWB 1WVFA 1N61C 4PVKA 2PLSA 1ZXIC 2QKNA 1N63C 4HG0A 2W54A 2W3SA 2I0KA 2EXRA 3JS8A 4XLOA 3AMZA 2VFRA 4BCAA 3AN1A 3BW7A 1FO4A 2VFVA 3VTEA 5D79A 4DNSA 3D2DA 2P4PA 1E0YA 5AE3A 1W1QA
chains in the Genus database with same CATH superfamily
3FW9A 1FIQB 5FXPA 3W8WA 2Y4GA 2W3RA 3NRZB 3FW7A 3GSYA 1W1JA 2BVGA 4BC9A 2Y3RA 3NVYB 5FXDA 3EJBB 1V97A 4BC7A 5FXEA 5L6GA 1FFVC 2Q4WA 3S1CA 3SR6B 1WVEA 5L6FA 3S1EA 1VDVA 3S1DA 3HRDC 1N62C 2IPIA 5AE1A 3TX1A 2NQWA 1W1MA 3D2HA 2GQUA 1VAOA 2BVHA 2QPMA 4PZFA 2VAOA 1HSKA 5FXFA 4PYTA 3EUB3 3KJMA 4JB1A 5G5GB 3NVVB 1W1OA 4ZOHB 4OALA 2R8DA 3NVZB 5HQXA 3EJEB 2E3TA 1E8HA 1W1LA 2UUVA 1JRPA 2VFUA 1W1RA 1QLUA 3C0PA 2VFSA 5AE2A 2GQTA 1WYGA 2O3GA 5AWVA 1MBBA 2Q85A 3TSJA 1QLTA 1DIQA 4PVEA 1I19A 1N5WC 4UD8A 2Y3SA 2P13A 2VFTA 4O95A 1N60C 4PWBA 2W55A 5HHZA 3PQBA 5I1VA 3LLBA 5G5HB 3LAEA 1DZNA 1W1KA 3RJ8A 3AM9A 1E8FA 3NS1B 2OAIA 3FWAA 1F0XA 1AHVA 1ZR6A 3ETRB 4EC3A 1MBTA 3B9JB 1FFUC 1AHZA 1W1SA 2BVFA 5I1WA 4JAYA 3FW8A 2RK5A 1E8GA 2UUUA 4BBYA 1SB3B 3S1FA 1DIIA 2PLIA 3D2JA 2AXRA 2YVSA 4PVJA 1RM6B 1AHUA 2MBRA 4PWCA 4PVHA 1UXYA 3W8XA 1T3QC 5HMRA 5K8EA 3DQ0A 3DEDA 2R2ZA 5ADZA 3TSHA 3RJAA 1JROA 3PM9A 2P3HA 4ML8A 3POPA 1N5XA 3W8ZA 3HSUA 3I99A 4MLAA 3NVWB 2WDWA 1WVFA 1N61C 4PVKA 2PLSA 1ZXIC 2QKNA 1N63C 3EJDB 4HG0A 2W54A 2W3SA 2I0KA 2EXRA 3JS8A 4XLOA 3AMZA 2VFRA 2Y08A 4BCAA 3AN1A 3BW7A 1FO4A 2VFVA 3VTEA 5D79A 4DNSA 3D2DA 2P4PA 1E0YA 5AE3A 1W1QA
chains in the Genus database with same CATH topology
3FW9A 1FIQB 5FXPA 3W8WA 2Y4GA 2W3RA 3NRZB 3FW7A 3GSYA 1W1JA 2BVGA 4BC9A 2Y3RA 5FXDA 3NVYB 1V97A 4BC7A 5FXEA 5L6GA 1FFVC 2Q4WA 3S1CA 3SR6B 1WVEA 5L6FA 3S1EA 1VDVA 3S1DA 3HRDC 1N62C 2IPIA 5AE1A 3TX1A 2NQWA 1W1MA 3D2HA 2GQUA 1VAOA 2BVHA 2QPMA 4PZFA 2VAOA 1HSKA 5FXFA 4PYTA 3EUB3 3KJMA 4JB1A 5G5GB 3NVVB 1W1OA 4ZOHB 4OALA 2R8DA 3NVZB 5HQXA 2E3TA 1E8HA 1W1LA 2UUVA 1JRPA 2VFUA 1W1RA 1QLUA 3C0PA 2VFSA 5AE2A 2GQTA 1WYGA 2O3GA 5AWVA 1MBBA 2Q85A 3TSJA 1QLTA 1DIQA 4PVEA 1I19A 1N5WC 4UD8A 2Y3SA 2P13A 2VFTA 4O95A 1N60C 4PWBA 2W55A 5HHZA 3PQBA 5I1VA 3LLBA 5G5HB 3LAEA 1DZNA 1W1KA 3RJ8A 3AM9A 1E8FA 3NS1B 2OAIA 3FWAA 1F0XA 1AHVA 1ZR6A 3ETRB 4EC3A 1MBTA 3B9JB 1FFUC 1AHZA 1W1SA 2BVFA 5I1WA 4JAYA 3FW8A 2RK5A 1E8GA 2UUUA 4BBYA 1SB3B 3S1FA 1DIIA 2PLIA 3D2JA 2AXRA 2YVSA 4PVJA 1RM6B 1AHUA 2MBRA 4PWCA 4PVHA 1UXYA 3W8XA 1T3QC 5HMRA 5K8EA 3DQ0A 3DEDA 2R2ZA 5ADZA 3TSHA 3RJAA 1JROA 3PM9A 2P3HA 4ML8A 3POPA 1N5XA 3W8ZA 3HSUA 3I99A 4MLAA 2WDWA 3NVWB 1WVFA 1N61C 4PVKA 2PLSA 1ZXIC 2QKNA 1N63C 4HG0A 2W54A 2W3SA 2I0KA 2EXRA 3JS8A 4XLOA 3AMZA 2VFRA 2Y08A 4BCAA 3AN1A 3BW7A 1FO4A 2VFVA 3VTEA 5D79A 4DNSA 3D2DA 2P4PA 1E0YA 5AE3A 1W1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW9 A;  1FIQ B;  5FXP A;  3W8W A;  2W3R A;  3NRZ B;  3FW7 A;  3GSY A;  1W1J A;  2BVG A;  4BC9 A;  5FXD A;  3NVY B;  1V97 A;  4BC7 A;  5FXE A;  1FFV C;  2Q4W A;  3S1C A;  3SR6 B;  1WVE A;  3S1E A;  1VDV A;  3S1D A;  3HRD C;  1N62 C;  5AE1 A;  3TX1 A;  2NQW A;  1W1M A;  3D2H A;  2GQU A;  1VAO A;  2BVH A;  2QPM A;  4PZF A;  2VAO A;  1HSK A;  5FXF A;  4PYT A;  3EUB 3;  3KJM A;  4JB1 A;  5G5G B;  3NVV B;  1W1O A;  4ZOH B;  4OAL A;  2R8D A;  3NVZ B;  5HQX A;  2E3T A;  1E8H A;  1W1L A;  1JRP A;  2VFU A;  1W1R A;  1QLU A;  3C0P A;  2VFS A;  5AE2 A;  2GQT A;  1WYG A;  2O3G A;  1MBB A;  2Q85 A;  3TSJ A;  1QLT A;  1DIQ A;  4PVE A;  1I19 A;  1N5W C;  4UD8 A;  2P13 A;  2VFT A;  4O95 A;  1N60 C;  4PWB A;  2W55 A;  5HHZ A;  3LLB A;  5G5H B;  3LAE A;  1DZN A;  1W1K A;  3AM9 A;  1E8F A;  3NS1 B;  2OAI A;  3FWA A;  1F0X A;  1AHV A;  1ZR6 A;  3ETR B;  4EC3 A;  1MBT A;  3B9J B;  1FFU C;  1AHZ A;  1W1S A;  2BVF A;  4JAY A;  3FW8 A;  2RK5 A;  1E8G A;  4BBY A;  1SB3 B;  3S1F A;  1DII A;  2PLI A;  3D2J A;  2AXR A;  2YVS A;  4PVJ A;  1RM6 B;  1AHU A;  2MBR A;  4PWC A;  4PVH A;  1UXY A;  3W8X A;  1T3Q C;  5HMR A;  3DQ0 A;  3DED A;  2R2Z A;  5ADZ A;  3TSH A;  1JRO A;  3PM9 A;  2P3H A;  4ML8 A;  1N5X A;  3W8Z A;  3I99 A;  4MLA A;  3NVW B;  1WVF A;  1N61 C;  4PVK A;  2PLS A;  1ZXI C;  2QKN A;  1N63 C;  4HG0 A;  2W54 A;  2W3S A;  2I0K A;  2EXR A;  3JS8 A;  4XLO A;  3AMZ A;  2VFR A;  4BCA A;  3AN1 A;  3BW7 A;  1FO4 A;  2VFV A;  3VTE A;  5D79 A;  4DNS A;  3D2D A;  2P4P A;  1E0Y A;  5AE3 A;  1W1Q A; 
#chains in the Genus database with same CATH topology
 3FW9 A;  1FIQ B;  5FXP A;  3W8W A;  2Y4G A;  2W3R A;  3NRZ B;  3FW7 A;  3GSY A;  1W1J A;  2BVG A;  4BC9 A;  2Y3R A;  3NVY B;  5FXD A;  3EJB B;  1V97 A;  4BC7 A;  5FXE A;  5L6G A;  1FFV C;  2Q4W A;  3S1C A;  3SR6 B;  1WVE A;  5L6F A;  3S1E A;  1VDV A;  3S1D A;  3HRD C;  1N62 C;  2IPI A;  5AE1 A;  3TX1 A;  2NQW A;  1W1M A;  3D2H A;  2GQU A;  1VAO A;  2BVH A;  2QPM A;  4PZF A;  2VAO A;  1HSK A;  5FXF A;  4PYT A;  3EUB 3;  3KJM A;  4JB1 A;  5G5G B;  3NVV B;  1W1O A;  4ZOH B;  4OAL A;  2R8D A;  3NVZ B;  5HQX A;  3EJE B;  2E3T A;  1E8H A;  1W1L A;  2UUV A;  1JRP A;  2VFU A;  1W1R A;  1QLU A;  3C0P A;  2VFS A;  5AE2 A;  2GQT A;  1WYG A;  2O3G A;  5AWV A;  1MBB A;  2Q85 A;  3TSJ A;  1QLT A;  1DIQ A;  4PVE A;  1I19 A;  1N5W C;  4UD8 A;  2Y3S A;  2P13 A;  2VFT A;  4O95 A;  1N60 C;  4PWB A;  2W55 A;  5HHZ A;  3PQB A;  5I1V A;  3LLB A;  5G5H B;  3LAE A;  1DZN A;  1W1K A;  3RJ8 A;  3AM9 A;  1E8F A;  3NS1 B;  2OAI A;  3FWA A;  1F0X A;  1AHV A;  1ZR6 A;  3ETR B;  4EC3 A;  1MBT A;  3B9J B;  1FFU C;  1AHZ A;  1W1S A;  2BVF A;  5I1W A;  4JAY A;  3FW8 A;  2RK5 A;  1E8G A;  2UUU A;  4BBY A;  1SB3 B;  3S1F A;  1DII A;  2PLI A;  3D2J A;  2AXR A;  2YVS A;  4PVJ A;  1RM6 B;  1AHU A;  2MBR A;  4PWC A;  4PVH A;  1UXY A;  3W8X A;  1T3Q C;  5HMR A;  5K8E A;  3DQ0 A;  3DED A;  2R2Z A;  5ADZ A;  3TSH A;  3RJA A;  1JRO A;  3PM9 A;  2P3H A;  4ML8 A;  3POP A;  1N5X A;  3W8Z A;  3HSU A;  3I99 A;  4MLA A;  3NVW B;  2WDW A;  1WVF A;  1N61 C;  4PVK A;  2PLS A;  1ZXI C;  2QKN A;  1N63 C;  3EJD B;  4HG0 A;  2W54 A;  2W3S A;  2I0K A;  2EXR A;  3JS8 A;  4XLO A;  3AMZ A;  2VFR A;  2Y08 A;  4BCA A;  3AN1 A;  3BW7 A;  1FO4 A;  2VFV A;  3VTE A;  5D79 A;  4DNS A;  3D2D A;  2P4P A;  1E0Y A;  5AE3 A;  1W1Q A; 
#chains in the Genus database with same CATH homology
 3FW9 A;  1FIQ B;  5FXP A;  3W8W A;  2Y4G A;  2W3R A;  3NRZ B;  3FW7 A;  3GSY A;  1W1J A;  2BVG A;  4BC9 A;  2Y3R A;  5FXD A;  3NVY B;  1V97 A;  4BC7 A;  5FXE A;  5L6G A;  1FFV C;  2Q4W A;  3S1C A;  3SR6 B;  1WVE A;  5L6F A;  3S1E A;  1VDV A;  3S1D A;  3HRD C;  1N62 C;  2IPI A;  5AE1 A;  3TX1 A;  2NQW A;  1W1M A;  3D2H A;  2GQU A;  1VAO A;  2BVH A;  2QPM A;  4PZF A;  2VAO A;  1HSK A;  5FXF A;  4PYT A;  3EUB 3;  3KJM A;  4JB1 A;  5G5G B;  3NVV B;  1W1O A;  4ZOH B;  4OAL A;  2R8D A;  3NVZ B;  5HQX A;  2E3T A;  1E8H A;  1W1L A;  2UUV A;  1JRP A;  2VFU A;  1W1R A;  1QLU A;  3C0P A;  2VFS A;  5AE2 A;  2GQT A;  1WYG A;  2O3G A;  5AWV A;  1MBB A;  2Q85 A;  3TSJ A;  1QLT A;  1DIQ A;  4PVE A;  1I19 A;  1N5W C;  4UD8 A;  2Y3S A;  2P13 A;  2VFT A;  4O95 A;  1N60 C;  4PWB A;  2W55 A;  5HHZ A;  3PQB A;  5I1V A;  3LLB A;  5G5H B;  3LAE A;  1DZN A;  1W1K A;  3RJ8 A;  3AM9 A;  1E8F A;  3NS1 B;  2OAI A;  3FWA A;  1F0X A;  1AHV A;  1ZR6 A;  3ETR B;  4EC3 A;  1MBT A;  3B9J B;  1FFU C;  1AHZ A;  1W1S A;  2BVF A;  5I1W A;  4JAY A;  3FW8 A;  2RK5 A;  1E8G A;  2UUU A;  4BBY A;  1SB3 B;  3S1F A;  1DII A;  2PLI A;  3D2J A;  2AXR A;  2YVS A;  4PVJ A;  1RM6 B;  1AHU A;  2MBR A;  4PWC A;  4PVH A;  1UXY A;  3W8X A;  1T3Q C;  5HMR A;  5K8E A;  3DQ0 A;  3DED A;  2R2Z A;  5ADZ A;  3TSH A;  3RJA A;  1JRO A;  3PM9 A;  2P3H A;  4ML8 A;  3POP A;  1N5X A;  3W8Z A;  3HSU A;  3I99 A;  4MLA A;  2WDW A;  3NVW B;  1WVF A;  1N61 C;  4PVK A;  2PLS A;  1ZXI C;  2QKN A;  1N63 C;  4HG0 A;  2W54 A;  2W3S A;  2I0K A;  2EXR A;  3JS8 A;  4XLO A;  3AMZ A;  2VFR A;  2Y08 A;  4BCA A;  3AN1 A;  3BW7 A;  1FO4 A;  2VFV A;  3VTE A;  5D79 A;  4DNS A;  3D2D A;  2P4P A;  1E0Y A;  5AE3 A;  1W1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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