4ML8A

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
488
structure length
488
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPVQASHFQSDGRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin oxidase 2
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
total genus 150
structure length 488
sequence length 488
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ml8A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ml8A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4ml8A03
4PVHA 1ZXIC 3TSHA 2P13A 3ETRB 1E0YA 1JRPA 4PVKA 3FW8A 4DNSA 1N63C 3NVYB 5FXDA 1FFUC 2E3TA 3SR6B 1W1OA 4PWBA 4BCAA 2W3SA 2GQTA 3BW7A 2O3GA 5ADZA 3NVWB 4ML8A 3FWAA 4PZFA 3JS8A 5FXPA 1E8FA 5D79A 1AHVA 3DQ0A 2AXRA 1DZNA 2I0KA 4PYTA 5HHZA 2EXRA 1MBBA 1DIIA 1ZR6A 4UD8A 3AM9A 3S1CA 3NS1B 2GQUA 4ZOHB 3W8ZA 5G5GB 2VFVA 3NRZB 3AN1A 1N62C 2VFTA 2QKNA 4JB1A 3NVVB 4O95A 2BVGA 4MLAA 1SB3B 3S1DA 1I19A 1N61C 3KJMA 4PVEA 3D2DA 3D2HA 3I99A 4HG0A 2VFRA 3FW9A 3TX1A 1AHZA 1WVFA 1W1JA 2Q85A 3LAEA 1E8GA 4JAYA 1V97A 1WYGA 3S1FA 2PLIA 4BC9A 5AE1A 3D2JA 3NVZB 2W55A 3TSJA 5AE2A 1JROA 1QLTA 1W1RA 1HSKA 1WVEA 1N5XA 1VDVA 1W1KA 2P4PA 3PM9A 4EC3A 4PWCA 2RK5A 3VTEA 1RM6B 1AHUA 3B9JB 2YVSA 1W1QA 1VAOA 3S1EA 3GSYA 1FFVC 2QPMA 2P3HA 2R8DA 3C0PA 1FIQB 3LLBA 3HRDC 2Q4WA 3EUB3 1W1LA 2MBRA 2OAIA 3W8WA 5FXEA 5FXFA 3FW7A 2BVFA 4XLOA 1DIQA 5HMRA 2VFSA 4BC7A 4OALA 2PLSA 1N60C 3DEDA 1QLUA 2BVHA 2VAOA 1UXYA 5G5HB 1F0XA 4PVJA 3W8XA 4BBYA 2W54A 5HQXA 2NQWA 2W3RA 1E8HA 2R2ZA 1N5WC 1FO4A 1MBTA 1T3QC 5AE3A 3AMZA 1W1MA 1W1SA 2VFUA
chains in the Genus database with same CATH superfamily
4PVHA 1ZXIC 3TSHA 2P13A 3POPA 3ETRB 1E0YA 1JRPA 4PVKA 3FW8A 4DNSA 1N63C 3NVYB 3RJ8A 2Y4GA 5FXDA 1FFUC 2E3TA 3SR6B 1W1OA 4PWBA 4BCAA 2Y08A 2W3SA 2GQTA 3BW7A 2O3GA 5L6FA 5ADZA 3NVWB 4ML8A 3FWAA 4PZFA 3JS8A 5FXPA 5AWVA 1E8FA 5D79A 1AHVA 3DQ0A 2AXRA 1DZNA 2I0KA 4PYTA 5HHZA 3PQBA 2EXRA 5I1VA 1MBBA 1DIIA 1ZR6A 2UUVA 4UD8A 3AM9A 3S1CA 3NS1B 2GQUA 4ZOHB 3W8ZA 5G5GB 2VFVA 3NRZB 3AN1A 1N62C 3EJBB 2VFTA 2QKNA 4JB1A 3NVVB 4O95A 2BVGA 4MLAA 1SB3B 3S1DA 1I19A 1N61C 3KJMA 4PVEA 3D2DA 3D2HA 3I99A 4HG0A 2VFRA 5L6GA 3RJAA 3FW9A 3TX1A 1AHZA 1WVFA 1W1JA 2Q85A 3LAEA 1E8GA 4JAYA 1V97A 1WYGA 3S1FA 2PLIA 4BC9A 2IPIA 5AE1A 5I1WA 3HSUA 3D2JA 3NVZB 2UUUA 2W55A 3TSJA 5AE2A 1JROA 1QLTA 1W1RA 1HSKA 1WVEA 1N5XA 1VDVA 1W1KA 2P4PA 3PM9A 4EC3A 4PWCA 2RK5A 3VTEA 1RM6B 1AHUA 3B9JB 2YVSA 1W1QA 1VAOA 3S1EA 3GSYA 1FFVC 2QPMA 2P3HA 2R8DA 3C0PA 1FIQB 2Y3RA 3LLBA 3HRDC 2Q4WA 3EUB3 3EJDB 1W1LA 2MBRA 2OAIA 3W8WA 5FXEA 5FXFA 3FW7A 2BVFA 4XLOA 1DIQA 5HMRA 2VFSA 4BC7A 4OALA 2Y3SA 2PLSA 2WDWA 1N60C 3DEDA 1QLUA 2BVHA 2VAOA 1UXYA 5G5HB 1F0XA 4PVJA 3W8XA 3EJEB 2W54A 4BBYA 5HQXA 2W3RA 2NQWA 1E8HA 2R2ZA 1N5WC 1FO4A 5K8EA 1MBTA 1T3QC 5AE3A 3AMZA 1W1MA 1W1SA 2VFUA
chains in the Genus database with same CATH topology
4PVHA 1ZXIC 3TSHA 2P13A 3POPA 3ETRB 1E0YA 1JRPA 4PVKA 3FW8A 4DNSA 1N63C 3NVYB 3RJ8A 2Y4GA 5FXDA 1FFUC 2E3TA 3SR6B 1W1OA 4PWBA 4BCAA 2Y08A 2W3SA 2GQTA 3BW7A 2O3GA 5L6FA 5ADZA 3NVWB 4ML8A 3FWAA 4PZFA 3JS8A 5FXPA 5AWVA 1E8FA 5D79A 1AHVA 3DQ0A 2AXRA 1DZNA 2I0KA 4PYTA 5HHZA 3PQBA 2EXRA 5I1VA 1MBBA 1DIIA 1ZR6A 2UUVA 4UD8A 3AM9A 3S1CA 3NS1B 2GQUA 4ZOHB 3W8ZA 5G5GB 2VFVA 3NRZB 3AN1A 1N62C 2VFTA 2QKNA 4JB1A 3NVVB 4O95A 2BVGA 4MLAA 1SB3B 3S1DA 1I19A 1N61C 3KJMA 4PVEA 3D2DA 3D2HA 3I99A 4HG0A 2VFRA 5L6GA 3RJAA 3FW9A 3TX1A 1AHZA 1WVFA 1W1JA 2Q85A 3LAEA 1E8GA 4JAYA 1V97A 1WYGA 3S1FA 2PLIA 4BC9A 2IPIA 5AE1A 5I1WA 3HSUA 3D2JA 3NVZB 2UUUA 2W55A 3TSJA 5AE2A 1JROA 1QLTA 1W1RA 1HSKA 1WVEA 1N5XA 1VDVA 1W1KA 2P4PA 3PM9A 4EC3A 4PWCA 2RK5A 3VTEA 1RM6B 1AHUA 3B9JB 2YVSA 1W1QA 1VAOA 3S1EA 3GSYA 1FFVC 2QPMA 2P3HA 2R8DA 3C0PA 1FIQB 2Y3RA 3LLBA 3HRDC 2Q4WA 3EUB3 1W1LA 2MBRA 2OAIA 3W8WA 5FXEA 5FXFA 3FW7A 2BVFA 4XLOA 1DIQA 5HMRA 2VFSA 4BC7A 4OALA 2Y3SA 2PLSA 2WDWA 1N60C 3DEDA 1QLUA 2BVHA 2VAOA 1UXYA 5G5HB 1F0XA 4PVJA 3W8XA 4BBYA 2W54A 5HQXA 2NQWA 2W3RA 1E8HA 2R2ZA 1N5WC 1FO4A 5K8EA 1MBTA 1T3QC 5AE3A 3AMZA 1W1MA 1W1SA 2VFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVH A;  1ZXI C;  3TSH A;  2P13 A;  3ETR B;  1E0Y A;  1JRP A;  4PVK A;  3FW8 A;  4DNS A;  1N63 C;  3NVY B;  5FXD A;  1FFU C;  2E3T A;  3SR6 B;  1W1O A;  4PWB A;  4BCA A;  2W3S A;  2GQT A;  3BW7 A;  2O3G A;  5ADZ A;  3NVW B;  4ML8 A;  3FWA A;  4PZF A;  3JS8 A;  5FXP A;  1E8F A;  5D79 A;  1AHV A;  3DQ0 A;  2AXR A;  1DZN A;  2I0K A;  4PYT A;  5HHZ A;  2EXR A;  1MBB A;  1DII A;  1ZR6 A;  4UD8 A;  3AM9 A;  3S1C A;  3NS1 B;  2GQU A;  4ZOH B;  3W8Z A;  5G5G B;  2VFV A;  3NRZ B;  3AN1 A;  1N62 C;  2VFT A;  2QKN A;  4JB1 A;  3NVV B;  4O95 A;  2BVG A;  4MLA A;  1SB3 B;  3S1D A;  1I19 A;  1N61 C;  3KJM A;  4PVE A;  3D2D A;  3D2H A;  3I99 A;  4HG0 A;  2VFR A;  3FW9 A;  3TX1 A;  1AHZ A;  1WVF A;  1W1J A;  2Q85 A;  3LAE A;  1E8G A;  4JAY A;  1V97 A;  1WYG A;  3S1F A;  2PLI A;  4BC9 A;  5AE1 A;  3D2J A;  3NVZ B;  2W55 A;  3TSJ A;  5AE2 A;  1JRO A;  1QLT A;  1W1R A;  1HSK A;  1WVE A;  1N5X A;  1VDV A;  1W1K A;  2P4P A;  3PM9 A;  4EC3 A;  4PWC A;  2RK5 A;  3VTE A;  1RM6 B;  1AHU A;  3B9J B;  2YVS A;  1W1Q A;  1VAO A;  3S1E A;  3GSY A;  1FFV C;  2QPM A;  2P3H A;  2R8D A;  3C0P A;  1FIQ B;  3LLB A;  3HRD C;  2Q4W A;  3EUB 3;  1W1L A;  2MBR A;  2OAI A;  3W8W A;  5FXE A;  5FXF A;  3FW7 A;  2BVF A;  4XLO A;  1DIQ A;  5HMR A;  2VFS A;  4BC7 A;  4OAL A;  2PLS A;  1N60 C;  3DED A;  1QLU A;  2BVH A;  2VAO A;  1UXY A;  5G5H B;  1F0X A;  4PVJ A;  3W8X A;  4BBY A;  2W54 A;  5HQX A;  2NQW A;  2W3R A;  1E8H A;  2R2Z A;  1N5W C;  1FO4 A;  1MBT A;  1T3Q C;  5AE3 A;  3AMZ A;  1W1M A;  1W1S A;  2VFU A; 
#chains in the Genus database with same CATH topology
 4PVH A;  1ZXI C;  3TSH A;  2P13 A;  3POP A;  3ETR B;  1E0Y A;  1JRP A;  4PVK A;  3FW8 A;  4DNS A;  1N63 C;  3NVY B;  3RJ8 A;  2Y4G A;  5FXD A;  1FFU C;  2E3T A;  3SR6 B;  1W1O A;  4PWB A;  4BCA A;  2Y08 A;  2W3S A;  2GQT A;  3BW7 A;  2O3G A;  5L6F A;  5ADZ A;  3NVW B;  4ML8 A;  3FWA A;  4PZF A;  3JS8 A;  5FXP A;  5AWV A;  1E8F A;  5D79 A;  1AHV A;  3DQ0 A;  2AXR A;  1DZN A;  2I0K A;  4PYT A;  5HHZ A;  3PQB A;  2EXR A;  5I1V A;  1MBB A;  1DII A;  1ZR6 A;  2UUV A;  4UD8 A;  3AM9 A;  3S1C A;  3NS1 B;  2GQU A;  4ZOH B;  3W8Z A;  5G5G B;  2VFV A;  3NRZ B;  3AN1 A;  1N62 C;  3EJB B;  2VFT A;  2QKN A;  4JB1 A;  3NVV B;  4O95 A;  2BVG A;  4MLA A;  1SB3 B;  3S1D A;  1I19 A;  1N61 C;  3KJM A;  4PVE A;  3D2D A;  3D2H A;  3I99 A;  4HG0 A;  2VFR A;  5L6G A;  3RJA A;  3FW9 A;  3TX1 A;  1AHZ A;  1WVF A;  1W1J A;  2Q85 A;  3LAE A;  1E8G A;  4JAY A;  1V97 A;  1WYG A;  3S1F A;  2PLI A;  4BC9 A;  2IPI A;  5AE1 A;  5I1W A;  3HSU A;  3D2J A;  3NVZ B;  2UUU A;  2W55 A;  3TSJ A;  5AE2 A;  1JRO A;  1QLT A;  1W1R A;  1HSK A;  1WVE A;  1N5X A;  1VDV A;  1W1K A;  2P4P A;  3PM9 A;  4EC3 A;  4PWC A;  2RK5 A;  3VTE A;  1RM6 B;  1AHU A;  3B9J B;  2YVS A;  1W1Q A;  1VAO A;  3S1E A;  3GSY A;  1FFV C;  2QPM A;  2P3H A;  2R8D A;  3C0P A;  1FIQ B;  2Y3R A;  3LLB A;  3HRD C;  2Q4W A;  3EUB 3;  3EJD B;  1W1L A;  2MBR A;  2OAI A;  3W8W A;  5FXE A;  5FXF A;  3FW7 A;  2BVF A;  4XLO A;  1DIQ A;  5HMR A;  2VFS A;  4BC7 A;  4OAL A;  2Y3S A;  2PLS A;  2WDW A;  1N60 C;  3DED A;  1QLU A;  2BVH A;  2VAO A;  1UXY A;  5G5H B;  1F0X A;  4PVJ A;  3W8X A;  3EJE B;  2W54 A;  4BBY A;  5HQX A;  2W3R A;  2NQW A;  1E8H A;  2R2Z A;  1N5W C;  1FO4 A;  5K8E A;  1MBT A;  1T3Q C;  5AE3 A;  3AMZ A;  1W1M A;  1W1S A;  2VFU A; 
#chains in the Genus database with same CATH homology
 4PVH A;  1ZXI C;  3TSH A;  2P13 A;  3POP A;  3ETR B;  1E0Y A;  1JRP A;  4PVK A;  3FW8 A;  4DNS A;  1N63 C;  3NVY B;  3RJ8 A;  2Y4G A;  5FXD A;  1FFU C;  2E3T A;  3SR6 B;  1W1O A;  4PWB A;  4BCA A;  2Y08 A;  2W3S A;  2GQT A;  3BW7 A;  2O3G A;  5L6F A;  5ADZ A;  3NVW B;  4ML8 A;  3FWA A;  4PZF A;  3JS8 A;  5FXP A;  5AWV A;  1E8F A;  5D79 A;  1AHV A;  3DQ0 A;  2AXR A;  1DZN A;  2I0K A;  4PYT A;  5HHZ A;  3PQB A;  2EXR A;  5I1V A;  1MBB A;  1DII A;  1ZR6 A;  2UUV A;  4UD8 A;  3AM9 A;  3S1C A;  3NS1 B;  2GQU A;  4ZOH B;  3W8Z A;  5G5G B;  2VFV A;  3NRZ B;  3AN1 A;  1N62 C;  2VFT A;  2QKN A;  4JB1 A;  3NVV B;  4O95 A;  2BVG A;  4MLA A;  1SB3 B;  3S1D A;  1I19 A;  1N61 C;  3KJM A;  4PVE A;  3D2D A;  3D2H A;  3I99 A;  4HG0 A;  2VFR A;  5L6G A;  3RJA A;  3FW9 A;  3TX1 A;  1AHZ A;  1WVF A;  1W1J A;  2Q85 A;  3LAE A;  1E8G A;  4JAY A;  1V97 A;  1WYG A;  3S1F A;  2PLI A;  4BC9 A;  2IPI A;  5AE1 A;  5I1W A;  3HSU A;  3D2J A;  3NVZ B;  2UUU A;  2W55 A;  3TSJ A;  5AE2 A;  1JRO A;  1QLT A;  1W1R A;  1HSK A;  1WVE A;  1N5X A;  1VDV A;  1W1K A;  2P4P A;  3PM9 A;  4EC3 A;  4PWC A;  2RK5 A;  3VTE A;  1RM6 B;  1AHU A;  3B9J B;  2YVS A;  1W1Q A;  1VAO A;  3S1E A;  3GSY A;  1FFV C;  2QPM A;  2P3H A;  2R8D A;  3C0P A;  1FIQ B;  2Y3R A;  3LLB A;  3HRD C;  2Q4W A;  3EUB 3;  1W1L A;  2MBR A;  2OAI A;  3W8W A;  5FXE A;  5FXF A;  3FW7 A;  2BVF A;  4XLO A;  1DIQ A;  5HMR A;  2VFS A;  4BC7 A;  4OAL A;  2Y3S A;  2PLS A;  2WDW A;  1N60 C;  3DED A;  1QLU A;  2BVH A;  2VAO A;  1UXY A;  5G5H B;  1F0X A;  4PVJ A;  3W8X A;  4BBY A;  2W54 A;  5HQX A;  2NQW A;  2W3R A;  1E8H A;  2R2Z A;  1N5W C;  1FO4 A;  5K8E A;  1MBT A;  1T3Q C;  5AE3 A;  3AMZ A;  1W1M A;  1W1S A;  2VFU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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