2UUVA

Alkyldihydroxyacetonephosphate synthase in p1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
573
structure length
523
Chain Sequence
HIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNYIEAKKLMTDIIFKYGGSRGWINVYRSLKETIDPKDICNPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
molecule tags Transferase
source organism Dictyostelium discoideum
molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
total genus 168
structure length 523
sequence length 573
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuvA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuvA01
5L6FA 2Y3RA 5K8EA 2WDWA 5AWVA 2Y3SA 2Y4GA 2Y08A 2IPIA 2UUVA 3RJAA 3PQBA 3POPA 2UUUA 5I1VA 5L6GA 3RJ8A 3HSUA 5I1WA
chains in the Genus database with same CATH superfamily
1N60C 5ADZA 1WVFA 3JS8A 1I19A 3FW8A 4PWBA 3AMZA 2WDWA 3LAEA 2OAIA 3PM9A 5FXDA 2Y3SA 2EXRA 3TSJA 1W1RA 3S1EA 4BCAA 4BC9A 2MBRA 4BBYA 2Y08A 3FW7A 3NS1B 3BW7A 1AHZA 2IPIA 2BVHA 3HRDC 4BC7A 3S1FA 3SR6B 3TSHA 3W8WA 4PWCA 4PVEA 2VFVA 3FWAA 5I1WA 1WVEA 3NVVB 2PLSA 1VDVA 3C0PA 4EC3A 1W1JA 1SB3B 1N5XA 5K8EA 4HG0A 3NVZB 3DEDA 1ZR6A 2VAOA 4PZFA 2P4PA 1DZNA 1FFVC 1V97A 3NVYB 4MLAA 2RK5A 1VAOA 1N5WC 2Q4WA 1W1OA 5AE3A 2VFUA 3S1CA 4DNSA 3AN1A 1WYGA 2VFTA 5FXEA 4JAYA 1E0YA 2W3RA 5I1VA 2QPMA 3W8ZA 3RJ8A 3NVWB 1FFUC 2PLIA 3ETRB 2BVFA 1JROA 2W55A 1W1QA 2P13A 3VTEA 1RM6B 2QKNA 3DQ0A 3I99A 1E8FA 2Y3RA 1E8HA 1T3QC 5AWVA 5FXPA 5D79A 2BVGA 2VFSA 5G5HB 1AHVA 3KJMA 2W54A 3W8XA 2R8DA 4PYTA 3D2HA 1W1KA 1FIQB 1E8GA 1ZXIC 3EUB3 2UUVA 3S1DA 3PQBA 1QLTA 3TX1A 3GSYA 3D2JA 3HSUA 1QLUA 4PVJA 4PVKA 5HHZA 5HQXA 4O95A 4PVHA 1W1MA 5HMRA 1W1LA 2Q85A 5L6FA 1MBBA 3D2DA 5AE1A 3B9JB 4UD8A 1DIQA 2GQUA 3NRZB 1UXYA 2YVSA 4JB1A 4ML8A 1HSKA 2Y4GA 3LLBA 5AE2A 2E3TA 2W3SA 2VFRA 5FXFA 2GQTA 1N62C 3AM9A 2I0KA 1F0XA 2NQWA 1W1SA 2R2ZA 3RJAA 1MBTA 1FO4A 3POPA 2UUUA 1AHUA 5G5GB 1JRPA 5L6GA 2P3HA 1N63C 2AXRA 4OALA 1DIIA 2O3GA 3FW9A 4ZOHB 1N61C 4XLOA
chains in the Genus database with same CATH topology
1N60C 5ADZA 1WVFA 3JS8A 1I19A 3FW8A 4PWBA 3AMZA 2WDWA 3LAEA 2OAIA 3PM9A 5FXDA 2Y3SA 2EXRA 3TSJA 1W1RA 3S1EA 4BCAA 4BC9A 2MBRA 4BBYA 2Y08A 3FW7A 3NS1B 3BW7A 1AHZA 2IPIA 2BVHA 3HRDC 4BC7A 3S1FA 3SR6B 3TSHA 3W8WA 4PWCA 4PVEA 2VFVA 3FWAA 5I1WA 1WVEA 3NVVB 2PLSA 1VDVA 3C0PA 4EC3A 1W1JA 1SB3B 1N5XA 5K8EA 4HG0A 3NVZB 3DEDA 1ZR6A 2VAOA 4PZFA 2P4PA 1DZNA 1FFVC 1V97A 3NVYB 4MLAA 2RK5A 1VAOA 1N5WC 2Q4WA 1W1OA 5AE3A 2VFUA 3S1CA 4DNSA 3AN1A 1WYGA 2VFTA 5FXEA 4JAYA 1E0YA 2W3RA 5I1VA 2QPMA 3W8ZA 3RJ8A 3NVWB 1FFUC 2PLIA 3ETRB 2BVFA 1JROA 2W55A 1W1QA 2P13A 3VTEA 1RM6B 2QKNA 3DQ0A 3I99A 1E8FA 2Y3RA 1E8HA 1T3QC 5AWVA 5FXPA 5D79A 2BVGA 2VFSA 5G5HB 1AHVA 3KJMA 2W54A 3W8XA 2R8DA 4PYTA 3D2HA 1W1KA 1FIQB 1E8GA 1ZXIC 3EUB3 2UUVA 3S1DA 3PQBA 1QLTA 3TX1A 3GSYA 3D2JA 3HSUA 1QLUA 4PVJA 4PVKA 5HHZA 5HQXA 4O95A 4PVHA 1W1MA 5HMRA 1W1LA 2Q85A 5L6FA 1MBBA 3D2DA 5AE1A 3B9JB 4UD8A 1DIQA 2GQUA 3NRZB 1UXYA 2YVSA 4JB1A 4ML8A 1HSKA 2Y4GA 3LLBA 5AE2A 2E3TA 2W3SA 2VFRA 5FXFA 2GQTA 1N62C 3AM9A 2I0KA 1F0XA 2NQWA 1W1SA 2R2ZA 3RJAA 1MBTA 1FO4A 3POPA 2UUUA 1AHUA 5G5GB 1JRPA 5L6GA 2P3HA 1N63C 2AXRA 4OALA 1DIIA 2O3GA 3FW9A 4ZOHB 1N61C 4XLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6F A;  2Y3R A;  5K8E A;  2WDW A;  5AWV A;  2Y3S A;  2Y4G A;  2Y08 A;  2IPI A;  2UUV A;  3RJA A;  3PQB A;  3POP A;  2UUU A;  5I1V A;  5L6G A;  3RJ8 A;  3HSU A;  5I1W A; 
#chains in the Genus database with same CATH topology
 1N60 C;  5ADZ A;  1WVF A;  3JS8 A;  1I19 A;  3FW8 A;  4PWB A;  3AMZ A;  2WDW A;  3LAE A;  2OAI A;  3PM9 A;  5FXD A;  2Y3S A;  2EXR A;  3TSJ A;  1W1R A;  3S1E A;  4BCA A;  4BC9 A;  2MBR A;  4BBY A;  2Y08 A;  3FW7 A;  3NS1 B;  3BW7 A;  1AHZ A;  2IPI A;  2BVH A;  3HRD C;  4BC7 A;  3S1F A;  3SR6 B;  3TSH A;  3W8W A;  4PWC A;  4PVE A;  2VFV A;  3FWA A;  5I1W A;  1WVE A;  3NVV B;  2PLS A;  1VDV A;  3C0P A;  4EC3 A;  1W1J A;  1SB3 B;  1N5X A;  5K8E A;  4HG0 A;  3NVZ B;  3DED A;  1ZR6 A;  2VAO A;  4PZF A;  2P4P A;  1DZN A;  1FFV C;  1V97 A;  3NVY B;  4MLA A;  2RK5 A;  1VAO A;  1N5W C;  2Q4W A;  1W1O A;  5AE3 A;  2VFU A;  3S1C A;  4DNS A;  3AN1 A;  1WYG A;  2VFT A;  5FXE A;  4JAY A;  1E0Y A;  2W3R A;  5I1V A;  2QPM A;  3W8Z A;  3RJ8 A;  3NVW B;  1FFU C;  2PLI A;  3ETR B;  2BVF A;  1JRO A;  2W55 A;  1W1Q A;  2P13 A;  3VTE A;  1RM6 B;  2QKN A;  3DQ0 A;  3I99 A;  1E8F A;  2Y3R A;  1E8H A;  1T3Q C;  5AWV A;  5FXP A;  5D79 A;  2BVG A;  2VFS A;  5G5H B;  1AHV A;  3KJM A;  2W54 A;  3W8X A;  2R8D A;  4PYT A;  3D2H A;  1W1K A;  1FIQ B;  1E8G A;  1ZXI C;  3EUB 3;  2UUV A;  3S1D A;  3PQB A;  1QLT A;  3TX1 A;  3GSY A;  3D2J A;  3HSU A;  1QLU A;  4PVJ A;  4PVK A;  5HHZ A;  5HQX A;  4O95 A;  4PVH A;  1W1M A;  5HMR A;  1W1L A;  2Q85 A;  5L6F A;  1MBB A;  3D2D A;  5AE1 A;  3B9J B;  4UD8 A;  1DIQ A;  2GQU A;  3NRZ B;  1UXY A;  2YVS A;  4JB1 A;  4ML8 A;  1HSK A;  2Y4G A;  3LLB A;  5AE2 A;  2E3T A;  2W3S A;  2VFR A;  5FXF A;  2GQT A;  1N62 C;  3AM9 A;  2I0K A;  1F0X A;  2NQW A;  1W1S A;  2R2Z A;  3RJA A;  1MBT A;  1FO4 A;  3POP A;  2UUU A;  1AHU A;  5G5G B;  1JRP A;  5L6G A;  2P3H A;  1N63 C;  2AXR A;  4OAL A;  1DII A;  2O3G A;  3FW9 A;  4ZOH B;  1N61 C;  4XLO A; 
#chains in the Genus database with same CATH homology
 1N60 C;  5ADZ A;  1WVF A;  3JS8 A;  1I19 A;  3FW8 A;  4PWB A;  3AMZ A;  2WDW A;  3LAE A;  2OAI A;  3PM9 A;  5FXD A;  2Y3S A;  2EXR A;  3TSJ A;  1W1R A;  3S1E A;  4BCA A;  4BC9 A;  2MBR A;  4BBY A;  2Y08 A;  3FW7 A;  3NS1 B;  3BW7 A;  1AHZ A;  2IPI A;  2BVH A;  3HRD C;  4BC7 A;  3S1F A;  3SR6 B;  3TSH A;  3W8W A;  4PWC A;  4PVE A;  2VFV A;  3FWA A;  5I1W A;  1WVE A;  3NVV B;  2PLS A;  1VDV A;  3C0P A;  4EC3 A;  1W1J A;  1SB3 B;  1N5X A;  5K8E A;  4HG0 A;  3NVZ B;  3DED A;  1ZR6 A;  2VAO A;  4PZF A;  2P4P A;  1DZN A;  1FFV C;  1V97 A;  3NVY B;  4MLA A;  2RK5 A;  1VAO A;  1N5W C;  2Q4W A;  1W1O A;  5AE3 A;  2VFU A;  3S1C A;  4DNS A;  3AN1 A;  1WYG A;  2VFT A;  5FXE A;  4JAY A;  1E0Y A;  2W3R A;  5I1V A;  2QPM A;  3W8Z A;  3RJ8 A;  3NVW B;  1FFU C;  2PLI A;  3ETR B;  2BVF A;  1JRO A;  2W55 A;  1W1Q A;  2P13 A;  3VTE A;  1RM6 B;  2QKN A;  3DQ0 A;  3I99 A;  1E8F A;  2Y3R A;  1E8H A;  1T3Q C;  5AWV A;  5FXP A;  5D79 A;  2BVG A;  2VFS A;  5G5H B;  1AHV A;  3KJM A;  2W54 A;  3W8X A;  2R8D A;  4PYT A;  3D2H A;  1W1K A;  1FIQ B;  1E8G A;  1ZXI C;  3EUB 3;  2UUV A;  3S1D A;  3PQB A;  1QLT A;  3TX1 A;  3GSY A;  3D2J A;  3HSU A;  1QLU A;  4PVJ A;  4PVK A;  5HHZ A;  5HQX A;  4O95 A;  4PVH A;  1W1M A;  5HMR A;  1W1L A;  2Q85 A;  5L6F A;  1MBB A;  3D2D A;  5AE1 A;  3B9J B;  4UD8 A;  1DIQ A;  2GQU A;  3NRZ B;  1UXY A;  2YVS A;  4JB1 A;  4ML8 A;  1HSK A;  2Y4G A;  3LLB A;  5AE2 A;  2E3T A;  2W3S A;  2VFR A;  5FXF A;  2GQT A;  1N62 C;  3AM9 A;  2I0K A;  1F0X A;  2NQW A;  1W1S A;  2R2Z A;  3RJA A;  1MBT A;  1FO4 A;  3POP A;  2UUU A;  1AHU A;  5G5G B;  1JRP A;  5L6G A;  2P3H A;  1N63 C;  2AXR A;  4OAL A;  1DII A;  2O3G A;  3FW9 A;  4ZOH B;  1N61 C;  4XLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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