2UUVA

Alkyldihydroxyacetonephosphate synthase in p1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
573
structure length
523
Chain Sequence
HIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNYIEAKKLMTDIIFKYGGSRGWINVYRSLKETIDPKDICNPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 168
structure length 523
sequence length 573
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuvA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuvA01
2UUVA 3RJAA 3POPA 2UUUA 3RJ8A 2Y3SA 5AWVA 2WDWA 5L6GA 5K8EA 2Y4GA 3HSUA 5L6FA 3PQBA 2Y08A 2IPIA 5I1WA 2Y3RA 5I1VA
chains in the Genus database with same CATH superfamily
3NVZB 1UXYA 2BVGA 3JS8A 2W3SA 2VFVA 3TX1A 1W1JA 3W8ZA 4PWBA 4PYTA 3RJAA 4PZFA 1W1MA 1ZR6A 3DEDA 3B9JB 1QLTA 1F0XA 1MBTA 4O95A 4ML8A 2UUUA 3NVWB 1I19A 3LLBA 4JAYA 5AWVA 2MBRA 4EC3A 2W55A 1WVFA 1AHUA 3NS1B 2R2ZA 2VFTA 5L6GA 2E3TA 1RM6B 3VTEA 2Y4GA 5AE3A 3FW8A 4PWCA 5AE2A 3D2DA 1AHZA 2VFUA 4HG0A 1DIQA 1N62C 1VDVA 5HMRA 5AE1A 2O3GA 3GSYA 1FO4A 1JROA 1E0YA 3C0PA 1DIIA 4BC7A 1FIQB 1E8GA 5HQXA 3RJ8A 4DNSA 4BC9A 1W1RA 1N63C 2BVHA 4JB1A 3TSHA 4XLOA 1AHVA 3HRDC 5FXFA 4BCAA 1W1SA 2Q4WA 2WDWA 3S1DA 5FXEA 1N60C 3SR6B 2NQWA 5G5GB 1JRPA 3S1EA 3AM9A 3FW9A 3PQBA 2W3RA 2IPIA 3AN1A 5ADZA 5FXPA 1W1KA 1N5WC 2Y3SA 5I1VA 3W8WA 2QKNA 2GQTA 2P3HA 2UUVA 2AXRA 2P13A 2I0KA 2VFSA 1MBBA 3BW7A 4MLAA 3NVVB 1WYGA 1T3QC 2OAIA 2P4PA 2PLIA 1N61C 5G5HB 2BVFA 3TSJA 3EUB3 1FFVC 1W1LA 2R8DA 3I99A 4ZOHB 3D2JA 1DZNA 5K8EA 4PVKA 3HSUA 5L6FA 3S1FA 1W1OA 1E8FA 2Y08A 2Q85A 2EXRA 3S1CA 2QPMA 2Y3RA 1WVEA 3NRZB 4PVJA 5HHZA 1FFUC 3DQ0A 1VAOA 4PVEA 1V97A 1SB3B 3W8XA 5D79A 4UD8A 3PM9A 4PVHA 3D2HA 1N5XA 3POPA 1E8HA 3LAEA 4BBYA 1HSKA 3KJMA 3ETRB 3FWAA 1W1QA 3FW7A 2W54A 2YVSA 1QLUA 5FXDA 2VFRA 3AMZA 2VAOA 4OALA 2GQUA 1ZXIC 2PLSA 5I1WA 3NVYB 2RK5A
chains in the Genus database with same CATH topology
3NVZB 1UXYA 2BVGA 3JS8A 2W3SA 2VFVA 3TX1A 1W1JA 3W8ZA 4PWBA 4PYTA 3RJAA 4PZFA 1W1MA 1ZR6A 3DEDA 3B9JB 1QLTA 1F0XA 1MBTA 4O95A 4ML8A 2UUUA 3NVWB 1I19A 3LLBA 4JAYA 5AWVA 2MBRA 4EC3A 2W55A 1WVFA 1AHUA 3NS1B 2R2ZA 2VFTA 5L6GA 2E3TA 1RM6B 3VTEA 2Y4GA 5AE3A 3FW8A 4PWCA 5AE2A 3D2DA 1AHZA 2VFUA 4HG0A 1DIQA 1N62C 1VDVA 5HMRA 5AE1A 2O3GA 3GSYA 1FO4A 1JROA 1E0YA 3C0PA 1DIIA 4BC7A 1FIQB 1E8GA 5HQXA 3RJ8A 4DNSA 4BC9A 1W1RA 1N63C 2BVHA 4JB1A 3TSHA 4XLOA 1AHVA 3HRDC 5FXFA 4BCAA 1W1SA 2Q4WA 2WDWA 3S1DA 5FXEA 1N60C 3SR6B 2NQWA 5G5GB 1JRPA 3S1EA 3AM9A 3FW9A 3PQBA 2W3RA 2IPIA 3AN1A 5ADZA 5FXPA 1W1KA 1N5WC 2Y3SA 5I1VA 3W8WA 2QKNA 2GQTA 2P3HA 2UUVA 2AXRA 2P13A 2I0KA 2VFSA 1MBBA 3BW7A 4MLAA 3NVVB 1WYGA 1T3QC 2OAIA 2P4PA 2PLIA 1N61C 5G5HB 2BVFA 3TSJA 3EUB3 1FFVC 1W1LA 2R8DA 3I99A 4ZOHB 3D2JA 1DZNA 5K8EA 4PVKA 3HSUA 5L6FA 3S1FA 1W1OA 1E8FA 2Y08A 2Q85A 2EXRA 3S1CA 2QPMA 2Y3RA 1WVEA 3NRZB 4PVJA 5HHZA 1FFUC 3DQ0A 1VAOA 4PVEA 1V97A 1SB3B 3W8XA 5D79A 4UD8A 3PM9A 4PVHA 3D2HA 1N5XA 3POPA 1E8HA 3LAEA 4BBYA 1HSKA 3KJMA 3ETRB 3FWAA 1W1QA 3FW7A 2W54A 2YVSA 1QLUA 5FXDA 2VFRA 3AMZA 2VAOA 4OALA 2GQUA 1ZXIC 2PLSA 5I1WA 3NVYB 2RK5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UUV A;  3RJA A;  3POP A;  2UUU A;  3RJ8 A;  2Y3S A;  5AWV A;  2WDW A;  5L6G A;  5K8E A;  2Y4G A;  3HSU A;  5L6F A;  3PQB A;  2Y08 A;  2IPI A;  5I1W A;  2Y3R A;  5I1V A; 
#chains in the Genus database with same CATH topology
 3NVZ B;  1UXY A;  2BVG A;  3JS8 A;  2W3S A;  2VFV A;  3TX1 A;  1W1J A;  3W8Z A;  4PWB A;  4PYT A;  3RJA A;  4PZF A;  1W1M A;  1ZR6 A;  3DED A;  3B9J B;  1QLT A;  1F0X A;  1MBT A;  4O95 A;  4ML8 A;  2UUU A;  3NVW B;  1I19 A;  3LLB A;  4JAY A;  5AWV A;  2MBR A;  4EC3 A;  2W55 A;  1WVF A;  1AHU A;  3NS1 B;  2R2Z A;  2VFT A;  5L6G A;  2E3T A;  1RM6 B;  3VTE A;  2Y4G A;  5AE3 A;  3FW8 A;  4PWC A;  5AE2 A;  3D2D A;  1AHZ A;  2VFU A;  4HG0 A;  1DIQ A;  1N62 C;  1VDV A;  5HMR A;  5AE1 A;  2O3G A;  3GSY A;  1FO4 A;  1JRO A;  1E0Y A;  3C0P A;  1DII A;  4BC7 A;  1FIQ B;  1E8G A;  5HQX A;  3RJ8 A;  4DNS A;  4BC9 A;  1W1R A;  1N63 C;  2BVH A;  4JB1 A;  3TSH A;  4XLO A;  1AHV A;  3HRD C;  5FXF A;  4BCA A;  1W1S A;  2Q4W A;  2WDW A;  3S1D A;  5FXE A;  1N60 C;  3SR6 B;  2NQW A;  5G5G B;  1JRP A;  3S1E A;  3AM9 A;  3FW9 A;  3PQB A;  2W3R A;  2IPI A;  3AN1 A;  5ADZ A;  5FXP A;  1W1K A;  1N5W C;  2Y3S A;  5I1V A;  3W8W A;  2QKN A;  2GQT A;  2P3H A;  2UUV A;  2AXR A;  2P13 A;  2I0K A;  2VFS A;  1MBB A;  3BW7 A;  4MLA A;  3NVV B;  1WYG A;  1T3Q C;  2OAI A;  2P4P A;  2PLI A;  1N61 C;  5G5H B;  2BVF A;  3TSJ A;  3EUB 3;  1FFV C;  1W1L A;  2R8D A;  3I99 A;  4ZOH B;  3D2J A;  1DZN A;  5K8E A;  4PVK A;  3HSU A;  5L6F A;  3S1F A;  1W1O A;  1E8F A;  2Y08 A;  2Q85 A;  2EXR A;  3S1C A;  2QPM A;  2Y3R A;  1WVE A;  3NRZ B;  4PVJ A;  5HHZ A;  1FFU C;  3DQ0 A;  1VAO A;  4PVE A;  1V97 A;  1SB3 B;  3W8X A;  5D79 A;  4UD8 A;  3PM9 A;  4PVH A;  3D2H A;  1N5X A;  3POP A;  1E8H A;  3LAE A;  4BBY A;  1HSK A;  3KJM A;  3ETR B;  3FWA A;  1W1Q A;  3FW7 A;  2W54 A;  2YVS A;  1QLU A;  5FXD A;  2VFR A;  3AMZ A;  2VAO A;  4OAL A;  2GQU A;  1ZXI C;  2PLS A;  5I1W A;  3NVY B;  2RK5 A; 
#chains in the Genus database with same CATH homology
 3NVZ B;  1UXY A;  2BVG A;  3JS8 A;  2W3S A;  2VFV A;  3TX1 A;  1W1J A;  3W8Z A;  4PWB A;  4PYT A;  3RJA A;  4PZF A;  1W1M A;  1ZR6 A;  3DED A;  3B9J B;  1QLT A;  1F0X A;  1MBT A;  4O95 A;  4ML8 A;  2UUU A;  3NVW B;  1I19 A;  3LLB A;  4JAY A;  5AWV A;  2MBR A;  4EC3 A;  2W55 A;  1WVF A;  1AHU A;  3NS1 B;  2R2Z A;  2VFT A;  5L6G A;  2E3T A;  1RM6 B;  3VTE A;  2Y4G A;  5AE3 A;  3FW8 A;  4PWC A;  5AE2 A;  3D2D A;  1AHZ A;  2VFU A;  4HG0 A;  1DIQ A;  1N62 C;  1VDV A;  5HMR A;  5AE1 A;  2O3G A;  3GSY A;  1FO4 A;  1JRO A;  1E0Y A;  3C0P A;  1DII A;  4BC7 A;  1FIQ B;  1E8G A;  5HQX A;  3RJ8 A;  4DNS A;  4BC9 A;  1W1R A;  1N63 C;  2BVH A;  4JB1 A;  3TSH A;  4XLO A;  1AHV A;  3HRD C;  5FXF A;  4BCA A;  1W1S A;  2Q4W A;  2WDW A;  3S1D A;  5FXE A;  1N60 C;  3SR6 B;  2NQW A;  5G5G B;  1JRP A;  3S1E A;  3AM9 A;  3FW9 A;  3PQB A;  2W3R A;  2IPI A;  3AN1 A;  5ADZ A;  5FXP A;  1W1K A;  1N5W C;  2Y3S A;  5I1V A;  3W8W A;  2QKN A;  2GQT A;  2P3H A;  2UUV A;  2AXR A;  2P13 A;  2I0K A;  2VFS A;  1MBB A;  3BW7 A;  4MLA A;  3NVV B;  1WYG A;  1T3Q C;  2OAI A;  2P4P A;  2PLI A;  1N61 C;  5G5H B;  2BVF A;  3TSJ A;  3EUB 3;  1FFV C;  1W1L A;  2R8D A;  3I99 A;  4ZOH B;  3D2J A;  1DZN A;  5K8E A;  4PVK A;  3HSU A;  5L6F A;  3S1F A;  1W1O A;  1E8F A;  2Y08 A;  2Q85 A;  2EXR A;  3S1C A;  2QPM A;  2Y3R A;  1WVE A;  3NRZ B;  4PVJ A;  5HHZ A;  1FFU C;  3DQ0 A;  1VAO A;  4PVE A;  1V97 A;  1SB3 B;  3W8X A;  5D79 A;  4UD8 A;  3PM9 A;  4PVH A;  3D2H A;  1N5X A;  3POP A;  1E8H A;  3LAE A;  4BBY A;  1HSK A;  3KJM A;  3ETR B;  3FWA A;  1W1Q A;  3FW7 A;  2W54 A;  2YVS A;  1QLU A;  5FXD A;  2VFR A;  3AMZ A;  2VAO A;  4OAL A;  2GQU A;  1ZXI C;  2PLS A;  5I1W A;  3NVY B;  2RK5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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