2UUVA

Alkyldihydroxyacetonephosphate synthase in p1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
573
structure length
523
Chain Sequence
HIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNYIEAKKLMTDIIFKYGGSRGWINVYRSLKETIDPKDICNPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 168
structure length 523
sequence length 573
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuvA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuvA01
2Y08A 3PQBA 5I1VA 2Y4GA 3POPA 2IPIA 5L6GA 5L6FA 3RJ8A 2Y3RA 2Y3SA 5K8EA 2WDWA 3HSUA 5I1WA 3RJAA 5AWVA 2UUVA 2UUUA
chains in the Genus database with same CATH superfamily
1JRPA 2VFTA 1I19A 5FXPA 2YVSA 1E8HA 1W1QA 4PYTA 5I1VA 1E0YA 3LAEA 1QLTA 3FW8A 3NVYB 5HQXA 1F0XA 2P3HA 3W8WA 2VFSA 2R8DA 5FXDA 3FW9A 2P13A 5K8EA 1FIQB 3AN1A 1W1MA 1MBTA 3TSHA 1VDVA 1UXYA 1AHUA 3W8XA 3HSUA 1VAOA 2PLIA 1FO4A 1N60C 2QPMA 3S1CA 2BVGA 5HHZA 1W1RA 4BCAA 3FWAA 2Q4WA 4MLAA 2Y08A 4BC7A 3HRDC 1WVEA 3S1FA 1E8FA 5G5HB 2VFRA 4UD8A 5L6GA 2EXRA 1WVFA 4PVJA 3D2HA 5D79A 3NRZB 3TSJA 2VAOA 4JAYA 5FXEA 1T3QC 1JROA 1ZR6A 3BW7A 1DIQA 4ML8A 2W55A 1AHZA 1WYGA 1SB3B 1V97A 2VFVA 5AWVA 3GSYA 2UUUA 1QLUA 2P4PA 3B9JB 1FFVC 4PVKA 4PVHA 1N62C 3KJMA 5HMRA 4PVEA 3VTEA 5AE3A 3POPA 3TX1A 1ZXIC 2W54A 3LLBA 2IPIA 2QKNA 1N5XA 1W1OA 5L6FA 3D2JA 3RJ8A 2W3SA 2Y3RA 2Y3SA 2OAIA 1E8GA 3S1DA 3C0PA 1W1LA 4BBYA 5AE2A 1DIIA 5AE1A 4BC9A 1AHVA 4HG0A 1W1KA 3EUB3 4PWCA 1HSKA 5I1WA 2AXRA 4PWBA 4ZOHB 2PLSA 3JS8A 5G5GB 3RJAA 1W1JA 4OALA 3PM9A 1RM6B 2R2ZA 3AM9A 2E3TA 3NS1B 3NVVB 4XLOA 3FW7A 3PQBA 4PZFA 2NQWA 2Q85A 2Y4GA 1W1SA 5FXFA 2I0KA 1FFUC 2O3GA 2MBRA 3AMZA 3I99A 2W3RA 3NVWB 1N63C 5ADZA 2RK5A 3D2DA 1N61C 3S1EA 4DNSA 3W8ZA 3NVZB 1MBBA 1DZNA 4O95A 2WDWA 2GQUA 3DEDA 4JB1A 2BVFA 2BVHA 2GQTA 3SR6B 3DQ0A 3ETRB 4EC3A 2UUVA 2VFUA 1N5WC
chains in the Genus database with same CATH topology
1JRPA 2VFTA 1I19A 5FXPA 2YVSA 1E8HA 1W1QA 4PYTA 5I1VA 1E0YA 3LAEA 1QLTA 3FW8A 3NVYB 5HQXA 1F0XA 2P3HA 3W8WA 2VFSA 2R8DA 5FXDA 3FW9A 2P13A 5K8EA 1FIQB 3AN1A 1W1MA 1MBTA 3TSHA 1VDVA 1UXYA 1AHUA 3W8XA 3HSUA 1VAOA 2PLIA 1FO4A 1N60C 2QPMA 3S1CA 2BVGA 5HHZA 1W1RA 4BCAA 3FWAA 2Q4WA 4MLAA 2Y08A 4BC7A 3HRDC 1WVEA 3S1FA 1E8FA 5G5HB 2VFRA 4UD8A 5L6GA 2EXRA 1WVFA 4PVJA 3D2HA 5D79A 3NRZB 3TSJA 2VAOA 4JAYA 5FXEA 1T3QC 1JROA 1ZR6A 3BW7A 1DIQA 4ML8A 2W55A 1AHZA 1WYGA 1SB3B 1V97A 2VFVA 5AWVA 3GSYA 2UUUA 1QLUA 2P4PA 3B9JB 1FFVC 4PVKA 4PVHA 1N62C 3KJMA 5HMRA 4PVEA 3VTEA 5AE3A 3POPA 3TX1A 1ZXIC 2W54A 3LLBA 2IPIA 2QKNA 1N5XA 1W1OA 5L6FA 3D2JA 3RJ8A 2W3SA 2Y3RA 2Y3SA 2OAIA 1E8GA 3S1DA 3C0PA 1W1LA 4BBYA 5AE2A 1DIIA 5AE1A 4BC9A 1AHVA 4HG0A 1W1KA 3EUB3 4PWCA 1HSKA 5I1WA 2AXRA 4PWBA 4ZOHB 2PLSA 3JS8A 5G5GB 3RJAA 1W1JA 4OALA 3PM9A 1RM6B 2R2ZA 3AM9A 2E3TA 3NS1B 3NVVB 4XLOA 3FW7A 3PQBA 4PZFA 2NQWA 2Q85A 2Y4GA 1W1SA 5FXFA 2I0KA 1FFUC 2O3GA 2MBRA 3AMZA 3I99A 2W3RA 3NVWB 1N63C 5ADZA 2RK5A 3D2DA 1N61C 3S1EA 4DNSA 3W8ZA 3NVZB 1MBBA 1DZNA 4O95A 2WDWA 2GQUA 3DEDA 4JB1A 2BVFA 2BVHA 2GQTA 3SR6B 3DQ0A 3ETRB 4EC3A 2UUVA 2VFUA 1N5WC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y08 A;  3PQB A;  5I1V A;  2Y4G A;  3POP A;  2IPI A;  5L6G A;  5L6F A;  3RJ8 A;  2Y3R A;  2Y3S A;  5K8E A;  2WDW A;  3HSU A;  5I1W A;  3RJA A;  5AWV A;  2UUV A;  2UUU A; 
#chains in the Genus database with same CATH topology
 1JRP A;  2VFT A;  1I19 A;  5FXP A;  2YVS A;  1E8H A;  1W1Q A;  4PYT A;  5I1V A;  1E0Y A;  3LAE A;  1QLT A;  3FW8 A;  3NVY B;  5HQX A;  1F0X A;  2P3H A;  3W8W A;  2VFS A;  2R8D A;  5FXD A;  3FW9 A;  2P13 A;  5K8E A;  1FIQ B;  3AN1 A;  1W1M A;  1MBT A;  3TSH A;  1VDV A;  1UXY A;  1AHU A;  3W8X A;  3HSU A;  1VAO A;  2PLI A;  1FO4 A;  1N60 C;  2QPM A;  3S1C A;  2BVG A;  5HHZ A;  1W1R A;  4BCA A;  3FWA A;  2Q4W A;  4MLA A;  2Y08 A;  4BC7 A;  3HRD C;  1WVE A;  3S1F A;  1E8F A;  5G5H B;  2VFR A;  4UD8 A;  5L6G A;  2EXR A;  1WVF A;  4PVJ A;  3D2H A;  5D79 A;  3NRZ B;  3TSJ A;  2VAO A;  4JAY A;  5FXE A;  1T3Q C;  1JRO A;  1ZR6 A;  3BW7 A;  1DIQ A;  4ML8 A;  2W55 A;  1AHZ A;  1WYG A;  1SB3 B;  1V97 A;  2VFV A;  5AWV A;  3GSY A;  2UUU A;  1QLU A;  2P4P A;  3B9J B;  1FFV C;  4PVK A;  4PVH A;  1N62 C;  3KJM A;  5HMR A;  4PVE A;  3VTE A;  5AE3 A;  3POP A;  3TX1 A;  1ZXI C;  2W54 A;  3LLB A;  2IPI A;  2QKN A;  1N5X A;  1W1O A;  5L6F A;  3D2J A;  3RJ8 A;  2W3S A;  2Y3R A;  2Y3S A;  2OAI A;  1E8G A;  3S1D A;  3C0P A;  1W1L A;  4BBY A;  5AE2 A;  1DII A;  5AE1 A;  4BC9 A;  1AHV A;  4HG0 A;  1W1K A;  3EUB 3;  4PWC A;  1HSK A;  5I1W A;  2AXR A;  4PWB A;  4ZOH B;  2PLS A;  3JS8 A;  5G5G B;  3RJA A;  1W1J A;  4OAL A;  3PM9 A;  1RM6 B;  2R2Z A;  3AM9 A;  2E3T A;  3NS1 B;  3NVV B;  4XLO A;  3FW7 A;  3PQB A;  4PZF A;  2NQW A;  2Q85 A;  2Y4G A;  1W1S A;  5FXF A;  2I0K A;  1FFU C;  2O3G A;  2MBR A;  3AMZ A;  3I99 A;  2W3R A;  3NVW B;  1N63 C;  5ADZ A;  2RK5 A;  3D2D A;  1N61 C;  3S1E A;  4DNS A;  3W8Z A;  3NVZ B;  1MBB A;  1DZN A;  4O95 A;  2WDW A;  2GQU A;  3DED A;  4JB1 A;  2BVF A;  2BVH A;  2GQT A;  3SR6 B;  3DQ0 A;  3ETR B;  4EC3 A;  2UUV A;  2VFU A;  1N5W C; 
#chains in the Genus database with same CATH homology
 1JRP A;  2VFT A;  1I19 A;  5FXP A;  2YVS A;  1E8H A;  1W1Q A;  4PYT A;  5I1V A;  1E0Y A;  3LAE A;  1QLT A;  3FW8 A;  3NVY B;  5HQX A;  1F0X A;  2P3H A;  3W8W A;  2VFS A;  2R8D A;  5FXD A;  3FW9 A;  2P13 A;  5K8E A;  1FIQ B;  3AN1 A;  1W1M A;  1MBT A;  3TSH A;  1VDV A;  1UXY A;  1AHU A;  3W8X A;  3HSU A;  1VAO A;  2PLI A;  1FO4 A;  1N60 C;  2QPM A;  3S1C A;  2BVG A;  5HHZ A;  1W1R A;  4BCA A;  3FWA A;  2Q4W A;  4MLA A;  2Y08 A;  4BC7 A;  3HRD C;  1WVE A;  3S1F A;  1E8F A;  5G5H B;  2VFR A;  4UD8 A;  5L6G A;  2EXR A;  1WVF A;  4PVJ A;  3D2H A;  5D79 A;  3NRZ B;  3TSJ A;  2VAO A;  4JAY A;  5FXE A;  1T3Q C;  1JRO A;  1ZR6 A;  3BW7 A;  1DIQ A;  4ML8 A;  2W55 A;  1AHZ A;  1WYG A;  1SB3 B;  1V97 A;  2VFV A;  5AWV A;  3GSY A;  2UUU A;  1QLU A;  2P4P A;  3B9J B;  1FFV C;  4PVK A;  4PVH A;  1N62 C;  3KJM A;  5HMR A;  4PVE A;  3VTE A;  5AE3 A;  3POP A;  3TX1 A;  1ZXI C;  2W54 A;  3LLB A;  2IPI A;  2QKN A;  1N5X A;  1W1O A;  5L6F A;  3D2J A;  3RJ8 A;  2W3S A;  2Y3R A;  2Y3S A;  2OAI A;  1E8G A;  3S1D A;  3C0P A;  1W1L A;  4BBY A;  5AE2 A;  1DII A;  5AE1 A;  4BC9 A;  1AHV A;  4HG0 A;  1W1K A;  3EUB 3;  4PWC A;  1HSK A;  5I1W A;  2AXR A;  4PWB A;  4ZOH B;  2PLS A;  3JS8 A;  5G5G B;  3RJA A;  1W1J A;  4OAL A;  3PM9 A;  1RM6 B;  2R2Z A;  3AM9 A;  2E3T A;  3NS1 B;  3NVV B;  4XLO A;  3FW7 A;  3PQB A;  4PZF A;  2NQW A;  2Q85 A;  2Y4G A;  1W1S A;  5FXF A;  2I0K A;  1FFU C;  2O3G A;  2MBR A;  3AMZ A;  3I99 A;  2W3R A;  3NVW B;  1N63 C;  5ADZ A;  2RK5 A;  3D2D A;  1N61 C;  3S1E A;  4DNS A;  3W8Z A;  3NVZ B;  1MBB A;  1DZN A;  4O95 A;  2WDW A;  2GQU A;  3DED A;  4JB1 A;  2BVF A;  2BVH A;  2GQT A;  3SR6 B;  3DQ0 A;  3ETR B;  4EC3 A;  2UUV A;  2VFU A;  1N5W C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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