2UUVA

Alkyldihydroxyacetonephosphate synthase in p1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
573
structure length
523
Chain Sequence
b'HIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNYIEAKKLMTDIIFKYGGSRGWINVYRSLKETIDPKDICNPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
molecule tags Transferase
source organism Dictyostelium discoideum
publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
total genus 168
structure length 523
sequence length 573
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuvA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuvA01
3HSUA 2IPIA 5I1WA 5L6GA 5K8EA 3PQBA 2UUVA 2UUUA 5I1VA 2Y4GA 2WDWA 3RJ8A 2Y08A 2Y3RA 5L6FA 3POPA 2Y3SA 3RJAA 5AWVA
chains in the Genus database with same CATH superfamily
1VAOA 1N62C 1T3QC 3BW7A 2Q85A 1N60C 2QPMA 3NS1B 2Y3RA 1AHUA 1UXYA 3KJMA 3NVZB 5D79A 3RJAA 3TSJA 5K8EA 2NQWA 2AXRA 3DEDA 2BVHA 1HSKA 2VFVA 2WDWA 3FW8A 4PVEA 1QLUA 2EXRA 3W8XA 1W1KA 1DIQA 1QLTA 2W55A 3S1FA 3FW7A 3PQBA 3S1EA 1W1QA 2RK5A 1W1SA 3HRDC 1WYGA 1W1RA 4PVHA 1VDVA 2VFTA 4XLOA 3FWAA 3GSYA 4UD8A 2I0KA 2QKNA 1AHZA 2VFUA 3C0PA 1JROA 5FXPA 4BBYA 2P3HA 2MBRA 4OALA 5HQXA 1FIQB 2YVSA 3EUB3 3B9JB 4ML8A 4EC3A 1JRPA 5AE3A 3SR6B 1DZNA 3NVWB 3S1CA 3NRZB 3D2DA 3POPA 5HHZA 3FW9A 4BC7A 1SB3B 4JB1A 4ZOHB 4DNSA 3PM9A 3D2JA 1MBTA 1W1OA 2VFSA 4O95A 1W1MA 5L6FA 1W1LA 3NVVB 1DIIA 1FFVC 1E8FA 5G5HB 1E8GA 2E3TA 3I99A 2GQUA 1AHVA 5FXEA 4BC9A 1E8HA 2VAOA 3DQ0A 3HSUA 3LAEA 2UUUA 1E0YA 5FXDA 5FXFA 5I1WA 4PVJA 5L6GA 4PWCA 3AM9A 2BVFA 3RJ8A 5G5GB 2Q4WA 5ADZA 4PZFA 5AWVA 5AE2A 4JAYA 1FO4A 1N5XA 1MBBA 4PYTA 1N5WC 2IPIA 2W3SA 3S1DA 3NVYB 3AMZA 2W3RA 1F0XA 3VTEA 3D2HA 4MLAA 2P4PA 4HG0A 2OAIA 4BCAA 2GQTA 1V97A 2P13A 2Y4GA 1WVFA 2VFRA 3AN1A 2BVGA 3W8ZA 5AE1A 1W1JA 1FFUC 3W8WA 1ZXIC 2PLIA 4PVKA 2R8DA 2O3GA 2UUVA 1WVEA 2R2ZA 4PWBA 3TSHA 5I1VA 1ZR6A 2W54A 1N63C 2Y3SA 3ETRB 1I19A 3TX1A 5HMRA 3JS8A 1RM6B 2PLSA 3LLBA 2Y08A 1N61C
chains in the Genus database with same CATH topology
1VAOA 1N62C 1T3QC 3BW7A 2Q85A 1N60C 2QPMA 3NS1B 2Y3RA 1AHUA 1UXYA 3KJMA 3NVZB 5D79A 3RJAA 3TSJA 5K8EA 2NQWA 2AXRA 3DEDA 2BVHA 1HSKA 2VFVA 2WDWA 3FW8A 4PVEA 1QLUA 2EXRA 3W8XA 1W1KA 1DIQA 1QLTA 2W55A 3S1FA 3FW7A 3PQBA 3S1EA 1W1QA 2RK5A 1W1SA 3HRDC 1WYGA 1W1RA 4PVHA 1VDVA 2VFTA 4XLOA 3FWAA 3GSYA 4UD8A 2I0KA 2QKNA 1AHZA 2VFUA 3C0PA 1JROA 5FXPA 4BBYA 2P3HA 2MBRA 4OALA 5HQXA 1FIQB 2YVSA 3EUB3 3B9JB 4ML8A 4EC3A 1JRPA 5AE3A 3SR6B 1DZNA 3NVWB 3S1CA 3NRZB 3D2DA 3POPA 5HHZA 3FW9A 4BC7A 1SB3B 4JB1A 4ZOHB 4DNSA 3PM9A 3D2JA 1MBTA 1W1OA 2VFSA 4O95A 1W1MA 5L6FA 1W1LA 3NVVB 1DIIA 1FFVC 1E8FA 5G5HB 1E8GA 2E3TA 3I99A 2GQUA 1AHVA 5FXEA 4BC9A 1E8HA 2VAOA 3DQ0A 3HSUA 3LAEA 2UUUA 1E0YA 5FXDA 5FXFA 5I1WA 4PVJA 5L6GA 4PWCA 3AM9A 2BVFA 3RJ8A 5G5GB 2Q4WA 5ADZA 4PZFA 5AWVA 5AE2A 4JAYA 1FO4A 1N5XA 1MBBA 4PYTA 1N5WC 2IPIA 2W3SA 3S1DA 3NVYB 3AMZA 2W3RA 1F0XA 3VTEA 3D2HA 4MLAA 2P4PA 4HG0A 2OAIA 4BCAA 2GQTA 1V97A 2P13A 2Y4GA 1WVFA 2VFRA 3AN1A 2BVGA 3W8ZA 5AE1A 1W1JA 1FFUC 3W8WA 1ZXIC 2PLIA 4PVKA 2R8DA 2O3GA 2UUVA 1WVEA 2R2ZA 4PWBA 3TSHA 5I1VA 1ZR6A 2W54A 1N63C 2Y3SA 3ETRB 1I19A 3TX1A 5HMRA 3JS8A 1RM6B 2PLSA 3LLBA 2Y08A 1N61C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HSU A;  2IPI A;  5I1W A;  5L6G A;  5K8E A;  3PQB A;  2UUV A;  2UUU A;  5I1V A;  2Y4G A;  2WDW A;  3RJ8 A;  2Y08 A;  2Y3R A;  5L6F A;  3POP A;  2Y3S A;  3RJA A;  5AWV A; 
#chains in the Genus database with same CATH topology
 1VAO A;  1N62 C;  1T3Q C;  3BW7 A;  2Q85 A;  1N60 C;  2QPM A;  3NS1 B;  2Y3R A;  1AHU A;  1UXY A;  3KJM A;  3NVZ B;  5D79 A;  3RJA A;  3TSJ A;  5K8E A;  2NQW A;  2AXR A;  3DED A;  2BVH A;  1HSK A;  2VFV A;  2WDW A;  3FW8 A;  4PVE A;  1QLU A;  2EXR A;  3W8X A;  1W1K A;  1DIQ A;  1QLT A;  2W55 A;  3S1F A;  3FW7 A;  3PQB A;  3S1E A;  1W1Q A;  2RK5 A;  1W1S A;  3HRD C;  1WYG A;  1W1R A;  4PVH A;  1VDV A;  2VFT A;  4XLO A;  3FWA A;  3GSY A;  4UD8 A;  2I0K A;  2QKN A;  1AHZ A;  2VFU A;  3C0P A;  1JRO A;  5FXP A;  4BBY A;  2P3H A;  2MBR A;  4OAL A;  5HQX A;  1FIQ B;  2YVS A;  3EUB 3;  3B9J B;  4ML8 A;  4EC3 A;  1JRP A;  5AE3 A;  3SR6 B;  1DZN A;  3NVW B;  3S1C A;  3NRZ B;  3D2D A;  3POP A;  5HHZ A;  3FW9 A;  4BC7 A;  1SB3 B;  4JB1 A;  4ZOH B;  4DNS A;  3PM9 A;  3D2J A;  1MBT A;  1W1O A;  2VFS A;  4O95 A;  1W1M A;  5L6F A;  1W1L A;  3NVV B;  1DII A;  1FFV C;  1E8F A;  5G5H B;  1E8G A;  2E3T A;  3I99 A;  2GQU A;  1AHV A;  5FXE A;  4BC9 A;  1E8H A;  2VAO A;  3DQ0 A;  3HSU A;  3LAE A;  2UUU A;  1E0Y A;  5FXD A;  5FXF A;  5I1W A;  4PVJ A;  5L6G A;  4PWC A;  3AM9 A;  2BVF A;  3RJ8 A;  5G5G B;  2Q4W A;  5ADZ A;  4PZF A;  5AWV A;  5AE2 A;  4JAY A;  1FO4 A;  1N5X A;  1MBB A;  4PYT A;  1N5W C;  2IPI A;  2W3S A;  3S1D A;  3NVY B;  3AMZ A;  2W3R A;  1F0X A;  3VTE A;  3D2H A;  4MLA A;  2P4P A;  4HG0 A;  2OAI A;  4BCA A;  2GQT A;  1V97 A;  2P13 A;  2Y4G A;  1WVF A;  2VFR A;  3AN1 A;  2BVG A;  3W8Z A;  5AE1 A;  1W1J A;  1FFU C;  3W8W A;  1ZXI C;  2PLI A;  4PVK A;  2R8D A;  2O3G A;  2UUV A;  1WVE A;  2R2Z A;  4PWB A;  3TSH A;  5I1V A;  1ZR6 A;  2W54 A;  1N63 C;  2Y3S A;  3ETR B;  1I19 A;  3TX1 A;  5HMR A;  3JS8 A;  1RM6 B;  2PLS A;  3LLB A;  2Y08 A;  1N61 C; 
#chains in the Genus database with same CATH homology
 1VAO A;  1N62 C;  1T3Q C;  3BW7 A;  2Q85 A;  1N60 C;  2QPM A;  3NS1 B;  2Y3R A;  1AHU A;  1UXY A;  3KJM A;  3NVZ B;  5D79 A;  3RJA A;  3TSJ A;  5K8E A;  2NQW A;  2AXR A;  3DED A;  2BVH A;  1HSK A;  2VFV A;  2WDW A;  3FW8 A;  4PVE A;  1QLU A;  2EXR A;  3W8X A;  1W1K A;  1DIQ A;  1QLT A;  2W55 A;  3S1F A;  3FW7 A;  3PQB A;  3S1E A;  1W1Q A;  2RK5 A;  1W1S A;  3HRD C;  1WYG A;  1W1R A;  4PVH A;  1VDV A;  2VFT A;  4XLO A;  3FWA A;  3GSY A;  4UD8 A;  2I0K A;  2QKN A;  1AHZ A;  2VFU A;  3C0P A;  1JRO A;  5FXP A;  4BBY A;  2P3H A;  2MBR A;  4OAL A;  5HQX A;  1FIQ B;  2YVS A;  3EUB 3;  3B9J B;  4ML8 A;  4EC3 A;  1JRP A;  5AE3 A;  3SR6 B;  1DZN A;  3NVW B;  3S1C A;  3NRZ B;  3D2D A;  3POP A;  5HHZ A;  3FW9 A;  4BC7 A;  1SB3 B;  4JB1 A;  4ZOH B;  4DNS A;  3PM9 A;  3D2J A;  1MBT A;  1W1O A;  2VFS A;  4O95 A;  1W1M A;  5L6F A;  1W1L A;  3NVV B;  1DII A;  1FFV C;  1E8F A;  5G5H B;  1E8G A;  2E3T A;  3I99 A;  2GQU A;  1AHV A;  5FXE A;  4BC9 A;  1E8H A;  2VAO A;  3DQ0 A;  3HSU A;  3LAE A;  2UUU A;  1E0Y A;  5FXD A;  5FXF A;  5I1W A;  4PVJ A;  5L6G A;  4PWC A;  3AM9 A;  2BVF A;  3RJ8 A;  5G5G B;  2Q4W A;  5ADZ A;  4PZF A;  5AWV A;  5AE2 A;  4JAY A;  1FO4 A;  1N5X A;  1MBB A;  4PYT A;  1N5W C;  2IPI A;  2W3S A;  3S1D A;  3NVY B;  3AMZ A;  2W3R A;  1F0X A;  3VTE A;  3D2H A;  4MLA A;  2P4P A;  4HG0 A;  2OAI A;  4BCA A;  2GQT A;  1V97 A;  2P13 A;  2Y4G A;  1WVF A;  2VFR A;  3AN1 A;  2BVG A;  3W8Z A;  5AE1 A;  1W1J A;  1FFU C;  3W8W A;  1ZXI C;  2PLI A;  4PVK A;  2R8D A;  2O3G A;  2UUV A;  1WVE A;  2R2Z A;  4PWB A;  3TSH A;  5I1V A;  1ZR6 A;  2W54 A;  1N63 C;  2Y3S A;  3ETR B;  1I19 A;  3TX1 A;  5HMR A;  3JS8 A;  1RM6 B;  2PLS A;  3LLB A;  2Y08 A;  1N61 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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