2I0KA

Cholesterol oxidase from brevibacterium sterolicum- his121ala mutant
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
556
structure length
536
Chain Sequence
APLPTPPNFPNDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFAPKGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVSGKPPQAREVSGPYNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITKLGLAATNANDIWGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDATFRPEWSKGWAFGPDPYTDNDIVTNKMRATYIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLLP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Oxidoreductase
publication title Structural and kinetic analyses of the H121A mutant of cholesterol oxidase.
pubmed doi rcsb
source organism Brevibacterium sterolicum
total genus 175
structure length 536
sequence length 556
ec nomenclature ec 1.1.3.6: Cholesterol oxidase.
pdb deposition date 2006-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09129 Chol_subst-bind Cholesterol oxidase, substrate-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 2i0kA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2i0kA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2i0kA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2i0kA03
4UD8A 3TSHA 3C0PA 3SR6B 5AE2A 3LLBA 4PZFA 2P13A 1FFUC 1V97A 2NQWA 1QLTA 1FFVC 3NVZB 1ZR6A 1JROA 2Q4WA 1E8HA 2VFRA 1WVFA 4PVJA 3FW7A 3S1CA 4PWBA 3S1DA 1VAOA 4PWCA 1MBBA 4XLOA 1VDVA 1DIIA 1FO4A 3D2JA 2W54A 2Q85A 5G5HB 2GQTA 3BW7A 1W1KA 1AHVA 2VFTA 2W55A 1FIQB 2AXRA 3D2DA 2VFVA 4PVEA 5G5GB 3W8WA 5AE3A 1F0XA 1WVEA 5D79A 5FXFA 3EUB3 3LAEA 2R8DA 1T3QC 3W8ZA 4OALA 5HMRA 1W1JA 2VFSA 3KJMA 2BVGA 4EC3A 3NRZB 4HG0A 3JS8A 4PYTA 5FXDA 3I99A 2P3HA 4ZOHB 2QPMA 1AHUA 1N60C 2W3RA 3B9JB 1N61C 4JB1A 4PVHA 3TX1A 3FWAA 5AE1A 2O3GA 2YVSA 2RK5A 3W8XA 1N5XA 1W1OA 1MBTA 3NS1B 3NVWB 3S1FA 2VAOA 3AMZA 4BC9A 1WYGA 2W3SA 2R2ZA 1HSKA 3D2HA 3DQ0A 4ML8A 5ADZA 3AN1A 2MBRA 1SB3B 4O95A 2P4PA 1W1RA 1W1QA 4DNSA 4BBYA 4PVKA 1JRPA 3ETRB 2EXRA 3NVYB 3DEDA 3NVVB 1AHZA 1DIQA 3GSYA 3VTEA 5FXEA 1UXYA 3FW9A 3FW8A 3AM9A 1E8FA 2I0KA 2BVHA 4BCAA 1E0YA 1W1LA 2GQUA 3PM9A 2OAIA 3HRDC 2QKNA 1N62C 1N63C 3S1EA 5HHZA 5HQXA 2BVFA 4BC7A 2VFUA 2E3TA 4JAYA 1QLUA 1W1SA 1N5WC 1DZNA 1ZXIC 2PLIA 1W1MA 5FXPA 1I19A 4MLAA 2PLSA 1RM6B 1E8GA 3TSJA
chains in the Genus database with same CATH superfamily
4UD8A 3TSHA 3C0PA 3SR6B 5AE2A 3LLBA 5AWVA 4PZFA 2P13A 1FFUC 1V97A 3EJEB 2NQWA 1QLTA 1FFVC 3NVZB 1ZR6A 3EJBB 1JROA 2Q4WA 1E8HA 2VFRA 1WVFA 4PVJA 3FW7A 3S1CA 4PWBA 3S1DA 1VAOA 3EJDB 4PWCA 1MBBA 2Y3SA 4XLOA 1VDVA 1DIIA 1FO4A 3D2JA 2W54A 3POPA 2Q85A 5G5HB 2IPIA 2GQTA 3BW7A 1W1KA 1AHVA 2VFTA 2W55A 1FIQB 3RJAA 2AXRA 3D2DA 5L6FA 2VFVA 4PVEA 5G5GB 3W8WA 5AE3A 1F0XA 2Y4GA 1WVEA 5D79A 5FXFA 3EUB3 3LAEA 2R8DA 1T3QC 3W8ZA 4OALA 5HMRA 1W1JA 2VFSA 3KJMA 2BVGA 4EC3A 3NRZB 4HG0A 3JS8A 4PYTA 5FXDA 3I99A 3PQBA 2P3HA 4ZOHB 2QPMA 1AHUA 1N60C 2W3RA 3B9JB 1N61C 4JB1A 4PVHA 3TX1A 3FWAA 5AE1A 2O3GA 2Y3RA 2RK5A 3W8XA 2YVSA 5L6GA 1N5XA 1W1OA 1MBTA 3NS1B 3NVWB 3S1FA 2VAOA 3AMZA 4BC9A 1WYGA 2W3SA 2R2ZA 1HSKA 3D2HA 3DQ0A 4ML8A 5ADZA 3AN1A 2MBRA 1SB3B 4O95A 2P4PA 1W1RA 1W1QA 4DNSA 3RJ8A 5I1WA 4BBYA 4PVKA 1JRPA 3ETRB 2EXRA 3NVYB 3DEDA 3NVVB 1AHZA 5K8EA 1DIQA 3GSYA 2Y08A 3VTEA 2UUUA 5FXEA 1UXYA 3FW9A 3FW8A 3HSUA 3AM9A 1E8FA 2I0KA 2BVHA 4BCAA 1E0YA 1W1LA 5I1VA 2GQUA 3PM9A 2WDWA 2OAIA 2UUVA 3HRDC 2QKNA 1N62C 1N63C 3S1EA 5HHZA 5HQXA 2BVFA 4BC7A 2VFUA 2E3TA 4JAYA 1QLUA 1W1SA 1N5WC 1DZNA 1ZXIC 2PLIA 1W1MA 5FXPA 1I19A 4MLAA 2PLSA 1RM6B 1E8GA 3TSJA
chains in the Genus database with same CATH topology
4UD8A 3TSHA 3C0PA 3SR6B 5AE2A 3LLBA 5AWVA 4PZFA 2P13A 1FFUC 1V97A 2NQWA 1QLTA 1FFVC 3NVZB 1ZR6A 1JROA 2Q4WA 1E8HA 2VFRA 1WVFA 4PVJA 3FW7A 3S1CA 4PWBA 3S1DA 1VAOA 4PWCA 1MBBA 2Y3SA 4XLOA 1VDVA 1DIIA 1FO4A 3D2JA 2W54A 3POPA 2Q85A 5G5HB 2IPIA 2GQTA 3BW7A 1W1KA 1AHVA 2VFTA 2W55A 1FIQB 3RJAA 2AXRA 3D2DA 5L6FA 2VFVA 4PVEA 5G5GB 3W8WA 5AE3A 1F0XA 2Y4GA 1WVEA 5D79A 5FXFA 3EUB3 3LAEA 2R8DA 1T3QC 3W8ZA 4OALA 5HMRA 1W1JA 2VFSA 3KJMA 2BVGA 4EC3A 3NRZB 4HG0A 3JS8A 4PYTA 5FXDA 3I99A 3PQBA 2P3HA 4ZOHB 2QPMA 1AHUA 1N60C 2W3RA 3B9JB 1N61C 4JB1A 4PVHA 3TX1A 3FWAA 5AE1A 2O3GA 2Y3RA 2RK5A 3W8XA 2YVSA 5L6GA 1N5XA 1W1OA 1MBTA 3NS1B 3NVWB 3S1FA 2VAOA 3AMZA 4BC9A 1WYGA 2W3SA 2R2ZA 1HSKA 3D2HA 3DQ0A 4ML8A 5ADZA 3AN1A 2MBRA 1SB3B 4O95A 2P4PA 1W1RA 1W1QA 4DNSA 3RJ8A 5I1WA 4BBYA 4PVKA 1JRPA 3ETRB 2EXRA 3NVYB 3DEDA 3NVVB 1AHZA 5K8EA 1DIQA 3GSYA 2Y08A 3VTEA 2UUUA 5FXEA 1UXYA 3FW9A 3FW8A 3HSUA 3AM9A 1E8FA 2I0KA 2BVHA 4BCAA 1E0YA 1W1LA 5I1VA 2GQUA 3PM9A 2WDWA 2OAIA 2UUVA 3HRDC 2QKNA 1N62C 1N63C 3S1EA 5HHZA 5HQXA 2BVFA 4BC7A 2VFUA 2E3TA 4JAYA 1QLUA 1W1SA 1N5WC 1DZNA 1ZXIC 2PLIA 1W1MA 5FXPA 1I19A 4MLAA 2PLSA 1RM6B 1E8GA 3TSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UD8 A;  3TSH A;  3C0P A;  3SR6 B;  5AE2 A;  3LLB A;  4PZF A;  2P13 A;  1FFU C;  1V97 A;  2NQW A;  1QLT A;  1FFV C;  3NVZ B;  1ZR6 A;  1JRO A;  2Q4W A;  1E8H A;  2VFR A;  1WVF A;  4PVJ A;  3FW7 A;  3S1C A;  4PWB A;  3S1D A;  1VAO A;  4PWC A;  1MBB A;  4XLO A;  1VDV A;  1DII A;  1FO4 A;  3D2J A;  2W54 A;  2Q85 A;  5G5H B;  2GQT A;  3BW7 A;  1W1K A;  1AHV A;  2VFT A;  2W55 A;  1FIQ B;  2AXR A;  3D2D A;  2VFV A;  4PVE A;  5G5G B;  3W8W A;  5AE3 A;  1F0X A;  1WVE A;  5D79 A;  5FXF A;  3EUB 3;  3LAE A;  2R8D A;  1T3Q C;  3W8Z A;  4OAL A;  5HMR A;  1W1J A;  2VFS A;  3KJM A;  2BVG A;  4EC3 A;  3NRZ B;  4HG0 A;  3JS8 A;  4PYT A;  5FXD A;  3I99 A;  2P3H A;  4ZOH B;  2QPM A;  1AHU A;  1N60 C;  2W3R A;  3B9J B;  1N61 C;  4JB1 A;  4PVH A;  3TX1 A;  3FWA A;  5AE1 A;  2O3G A;  2YVS A;  2RK5 A;  3W8X A;  1N5X A;  1W1O A;  1MBT A;  3NS1 B;  3NVW B;  3S1F A;  2VAO A;  3AMZ A;  4BC9 A;  1WYG A;  2W3S A;  2R2Z A;  1HSK A;  3D2H A;  3DQ0 A;  4ML8 A;  5ADZ A;  3AN1 A;  2MBR A;  1SB3 B;  4O95 A;  2P4P A;  1W1R A;  1W1Q A;  4DNS A;  4BBY A;  4PVK A;  1JRP A;  3ETR B;  2EXR A;  3NVY B;  3DED A;  3NVV B;  1AHZ A;  1DIQ A;  3GSY A;  3VTE A;  5FXE A;  1UXY A;  3FW9 A;  3FW8 A;  3AM9 A;  1E8F A;  2I0K A;  2BVH A;  4BCA A;  1E0Y A;  1W1L A;  2GQU A;  3PM9 A;  2OAI A;  3HRD C;  2QKN A;  1N62 C;  1N63 C;  3S1E A;  5HHZ A;  5HQX A;  2BVF A;  4BC7 A;  2VFU A;  2E3T A;  4JAY A;  1QLU A;  1W1S A;  1N5W C;  1DZN A;  1ZXI C;  2PLI A;  1W1M A;  5FXP A;  1I19 A;  4MLA A;  2PLS A;  1RM6 B;  1E8G A;  3TSJ A; 
#chains in the Genus database with same CATH topology
 4UD8 A;  3TSH A;  3C0P A;  3SR6 B;  5AE2 A;  3LLB A;  5AWV A;  4PZF A;  2P13 A;  1FFU C;  1V97 A;  3EJE B;  2NQW A;  1QLT A;  1FFV C;  3NVZ B;  1ZR6 A;  3EJB B;  1JRO A;  2Q4W A;  1E8H A;  2VFR A;  1WVF A;  4PVJ A;  3FW7 A;  3S1C A;  4PWB A;  3S1D A;  1VAO A;  3EJD B;  4PWC A;  1MBB A;  2Y3S A;  4XLO A;  1VDV A;  1DII A;  1FO4 A;  3D2J A;  2W54 A;  3POP A;  2Q85 A;  5G5H B;  2IPI A;  2GQT A;  3BW7 A;  1W1K A;  1AHV A;  2VFT A;  2W55 A;  1FIQ B;  3RJA A;  2AXR A;  3D2D A;  5L6F A;  2VFV A;  4PVE A;  5G5G B;  3W8W A;  5AE3 A;  1F0X A;  2Y4G A;  1WVE A;  5D79 A;  5FXF A;  3EUB 3;  3LAE A;  2R8D A;  1T3Q C;  3W8Z A;  4OAL A;  5HMR A;  1W1J A;  2VFS A;  3KJM A;  2BVG A;  4EC3 A;  3NRZ B;  4HG0 A;  3JS8 A;  4PYT A;  5FXD A;  3I99 A;  3PQB A;  2P3H A;  4ZOH B;  2QPM A;  1AHU A;  1N60 C;  2W3R A;  3B9J B;  1N61 C;  4JB1 A;  4PVH A;  3TX1 A;  3FWA A;  5AE1 A;  2O3G A;  2Y3R A;  2RK5 A;  3W8X A;  2YVS A;  5L6G A;  1N5X A;  1W1O A;  1MBT A;  3NS1 B;  3NVW B;  3S1F A;  2VAO A;  3AMZ A;  4BC9 A;  1WYG A;  2W3S A;  2R2Z A;  1HSK A;  3D2H A;  3DQ0 A;  4ML8 A;  5ADZ A;  3AN1 A;  2MBR A;  1SB3 B;  4O95 A;  2P4P A;  1W1R A;  1W1Q A;  4DNS A;  3RJ8 A;  5I1W A;  4BBY A;  4PVK A;  1JRP A;  3ETR B;  2EXR A;  3NVY B;  3DED A;  3NVV B;  1AHZ A;  5K8E A;  1DIQ A;  3GSY A;  2Y08 A;  3VTE A;  2UUU A;  5FXE A;  1UXY A;  3FW9 A;  3FW8 A;  3HSU A;  3AM9 A;  1E8F A;  2I0K A;  2BVH A;  4BCA A;  1E0Y A;  1W1L A;  5I1V A;  2GQU A;  3PM9 A;  2WDW A;  2OAI A;  2UUV A;  3HRD C;  2QKN A;  1N62 C;  1N63 C;  3S1E A;  5HHZ A;  5HQX A;  2BVF A;  4BC7 A;  2VFU A;  2E3T A;  4JAY A;  1QLU A;  1W1S A;  1N5W C;  1DZN A;  1ZXI C;  2PLI A;  1W1M A;  5FXP A;  1I19 A;  4MLA A;  2PLS A;  1RM6 B;  1E8G A;  3TSJ A; 
#chains in the Genus database with same CATH homology
 4UD8 A;  3TSH A;  3C0P A;  3SR6 B;  5AE2 A;  3LLB A;  5AWV A;  4PZF A;  2P13 A;  1FFU C;  1V97 A;  2NQW A;  1QLT A;  1FFV C;  3NVZ B;  1ZR6 A;  1JRO A;  2Q4W A;  1E8H A;  2VFR A;  1WVF A;  4PVJ A;  3FW7 A;  3S1C A;  4PWB A;  3S1D A;  1VAO A;  4PWC A;  1MBB A;  2Y3S A;  4XLO A;  1VDV A;  1DII A;  1FO4 A;  3D2J A;  2W54 A;  3POP A;  2Q85 A;  5G5H B;  2IPI A;  2GQT A;  3BW7 A;  1W1K A;  1AHV A;  2VFT A;  2W55 A;  1FIQ B;  3RJA A;  2AXR A;  3D2D A;  5L6F A;  2VFV A;  4PVE A;  5G5G B;  3W8W A;  5AE3 A;  1F0X A;  2Y4G A;  1WVE A;  5D79 A;  5FXF A;  3EUB 3;  3LAE A;  2R8D A;  1T3Q C;  3W8Z A;  4OAL A;  5HMR A;  1W1J A;  2VFS A;  3KJM A;  2BVG A;  4EC3 A;  3NRZ B;  4HG0 A;  3JS8 A;  4PYT A;  5FXD A;  3I99 A;  3PQB A;  2P3H A;  4ZOH B;  2QPM A;  1AHU A;  1N60 C;  2W3R A;  3B9J B;  1N61 C;  4JB1 A;  4PVH A;  3TX1 A;  3FWA A;  5AE1 A;  2O3G A;  2Y3R A;  2RK5 A;  3W8X A;  2YVS A;  5L6G A;  1N5X A;  1W1O A;  1MBT A;  3NS1 B;  3NVW B;  3S1F A;  2VAO A;  3AMZ A;  4BC9 A;  1WYG A;  2W3S A;  2R2Z A;  1HSK A;  3D2H A;  3DQ0 A;  4ML8 A;  5ADZ A;  3AN1 A;  2MBR A;  1SB3 B;  4O95 A;  2P4P A;  1W1R A;  1W1Q A;  4DNS A;  3RJ8 A;  5I1W A;  4BBY A;  4PVK A;  1JRP A;  3ETR B;  2EXR A;  3NVY B;  3DED A;  3NVV B;  1AHZ A;  5K8E A;  1DIQ A;  3GSY A;  2Y08 A;  3VTE A;  2UUU A;  5FXE A;  1UXY A;  3FW9 A;  3FW8 A;  3HSU A;  3AM9 A;  1E8F A;  2I0K A;  2BVH A;  4BCA A;  1E0Y A;  1W1L A;  5I1V A;  2GQU A;  3PM9 A;  2WDW A;  2OAI A;  2UUV A;  3HRD C;  2QKN A;  1N62 C;  1N63 C;  3S1E A;  5HHZ A;  5HQX A;  2BVF A;  4BC7 A;  2VFU A;  2E3T A;  4JAY A;  1QLU A;  1W1S A;  1N5W C;  1DZN A;  1ZXI C;  2PLI A;  1W1M A;  5FXP A;  1I19 A;  4MLA A;  2PLS A;  1RM6 B;  1E8G A;  3TSJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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