5K8EA

Xylooligosaccharide oxidase from myceliophthora thermophila c1
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
total genus 151
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5k8eA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5k8eA02
5L6FA 3TSJA 2Y3RA 5AWVA 3RJ8A 3RJAA 3D2JA 3POPA 5L6GA 4PWCA 4UD8A 2Y08A 2BVFA 3HSUA 3PQBA 2WDWA 2UUUA 2Y4GA 1ZR6A 3FW8A 5D79A 4EC3A 4PVEA 3FWAA 4DNSA 3D2HA 3W8WA 2BVHA 2AXRA 3W8ZA 2IPIA 3VTEA 4XLOA 4PVJA 3TSHA 3FW7A 3FW9A 4PVKA 4PZFA 2BVGA 5K8EA 4PVHA 3GSYA 3W8XA 5I1WA 3D2DA 4PWBA 2Y3SA 2UUVA 5I1VA
chains in the Genus database with same CATH superfamily
2P3HA 2MBRA 5HHZA 1W1OA 2E3TA 3TSJA 1E8GA 5AWVA 4ZOHB 5G5HB 2P13A 1F0XA 4EC3A 1JROA 1W1RA 3FWAA 5AE2A 1VDVA 1W1JA 2AXRA 5G5GB 1W1MA 2RK5A 2R8DA 3DQ0A 3TX1A 3VTEA 4PVJA 3TSHA 3PM9A 3NVWB 2GQTA 2O3GA 2VFUA 3NVVB 4O95A 3JS8A 4PWBA 2UUVA 5I1VA 3C0PA 3NS1B 1N62C 5HQXA 2Y3RA 4PYTA 2W55A 3AM9A 4OALA 3RJAA 1V97A 3POPA 3LLBA 1FIQB 2BVFA 4JAYA 1W1SA 3PQBA 4HG0A 1MBTA 2VFTA 2P4PA 5ADZA 3NVZB 1W1LA 1N61C 1W1KA 1UXYA 3S1EA 1FO4A 2IPIA 4XLOA 3KJMA 1FFVC 4PVKA 2QPMA 1ZXIC 1WYGA 2I0KA 2BVGA 2VFSA 4PVHA 3HRDC 4JB1A 3S1FA 5AE3A 5AE1A 5L6FA 3RJ8A 4BC7A 2EXRA 2PLIA 2Q85A 1JRPA 2OAIA 4UD8A 2Y08A 2GQUA 4BBYA 1N5XA 3HSUA 4MLAA 3DEDA 2WDWA 5D79A 1ZR6A 1E8HA 3FW8A 3S1DA 3B9JB 2W3RA 3I99A 1T3QC 2BVHA 3AMZA 5FXDA 4BC9A 1AHUA 1I19A 1DZNA 1MBBA 1DIQA 1QLTA 2R2ZA 2QKNA 3FW7A 1AHVA 2W54A 1E0YA 2NQWA 1VAOA 1W1QA 2PLSA 1WVEA 2W3SA 3NRZB 1E8FA 1N5WC 1N63C 1RM6B 1N60C 2UUUA 1QLUA 2Y3SA 3AN1A 2VFVA 5FXEA 3BW7A 3NVYB 3D2JA 1SB3B 1FFUC 5L6GA 5HMRA 4PWCA 2Y4GA 2Q4WA 3LAEA 4PVEA 4DNSA 3D2HA 4ML8A 3SR6B 3W8WA 3S1CA 3W8ZA 4BCAA 5FXPA 2YVSA 3EUB3 1DIIA 3ETRB 3FW9A 4PZFA 2VFRA 5K8EA 1AHZA 1HSKA 1WVFA 3GSYA 3W8XA 5I1WA 3D2DA 5FXFA 2VAOA
chains in the Genus database with same CATH topology
2P3HA 2MBRA 5HHZA 1W1OA 2E3TA 3TSJA 1E8GA 5AWVA 4ZOHB 5G5HB 2P13A 1F0XA 4EC3A 1JROA 1W1RA 3FWAA 5AE2A 1VDVA 1W1JA 2AXRA 5G5GB 1W1MA 2RK5A 2R8DA 3DQ0A 3TX1A 3VTEA 4PVJA 3TSHA 3PM9A 3NVWB 2GQTA 2O3GA 2VFUA 3NVVB 4O95A 3JS8A 4PWBA 2UUVA 5I1VA 3C0PA 3NS1B 1N62C 5HQXA 2Y3RA 4PYTA 2W55A 3AM9A 4OALA 3RJAA 1V97A 3POPA 3LLBA 1FIQB 2BVFA 4JAYA 1W1SA 3PQBA 4HG0A 1MBTA 2VFTA 2P4PA 5ADZA 3NVZB 1W1LA 1N61C 1W1KA 1UXYA 3S1EA 1FO4A 2IPIA 4XLOA 3KJMA 1FFVC 4PVKA 2QPMA 1ZXIC 1WYGA 2I0KA 2BVGA 2VFSA 4PVHA 3HRDC 4JB1A 3S1FA 5AE3A 5AE1A 5L6FA 3RJ8A 4BC7A 2EXRA 2PLIA 2Q85A 1JRPA 2OAIA 4UD8A 2Y08A 2GQUA 4BBYA 1N5XA 3HSUA 4MLAA 3DEDA 2WDWA 5D79A 1ZR6A 1E8HA 3FW8A 3S1DA 3B9JB 2W3RA 3I99A 1T3QC 2BVHA 3AMZA 5FXDA 4BC9A 1AHUA 1I19A 1DZNA 1MBBA 1DIQA 1QLTA 2R2ZA 2QKNA 3FW7A 1AHVA 2W54A 1E0YA 2NQWA 1VAOA 1W1QA 2PLSA 1WVEA 2W3SA 3NRZB 1E8FA 1N5WC 1N63C 1RM6B 1N60C 2UUUA 1QLUA 2Y3SA 3AN1A 2VFVA 5FXEA 3BW7A 3NVYB 3D2JA 1SB3B 1FFUC 5L6GA 5HMRA 4PWCA 2Y4GA 2Q4WA 3LAEA 4PVEA 4DNSA 3D2HA 4ML8A 3SR6B 3W8WA 3S1CA 3W8ZA 4BCAA 5FXPA 2YVSA 3EUB3 1DIIA 3ETRB 3FW9A 4PZFA 2VFRA 5K8EA 1AHZA 1HSKA 1WVFA 3GSYA 3W8XA 5I1WA 3D2DA 5FXFA 2VAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6F A;  3TSJ A;  2Y3R A;  5AWV A;  3RJ8 A;  3RJA A;  3D2J A;  3POP A;  5L6G A;  4PWC A;  4UD8 A;  2Y08 A;  2BVF A;  3HSU A;  3PQB A;  2WDW A;  2UUU A;  2Y4G A;  1ZR6 A;  3FW8 A;  5D79 A;  4EC3 A;  4PVE A;  3FWA A;  4DNS A;  3D2H A;  3W8W A;  2BVH A;  2AXR A;  3W8Z A;  2IPI A;  3VTE A;  4XLO A;  4PVJ A;  3TSH A;  3FW7 A;  3FW9 A;  4PVK A;  4PZF A;  2BVG A;  5K8E A;  4PVH A;  3GSY A;  3W8X A;  5I1W A;  3D2D A;  4PWB A;  2Y3S A;  2UUV A;  5I1V A; 
#chains in the Genus database with same CATH topology
 2P3H A;  2MBR A;  5HHZ A;  1W1O A;  2E3T A;  3TSJ A;  1E8G A;  5AWV A;  4ZOH B;  5G5H B;  2P13 A;  1F0X A;  4EC3 A;  1JRO A;  1W1R A;  3FWA A;  5AE2 A;  1VDV A;  1W1J A;  2AXR A;  5G5G B;  1W1M A;  2RK5 A;  2R8D A;  3DQ0 A;  3TX1 A;  3VTE A;  4PVJ A;  3TSH A;  3PM9 A;  3NVW B;  2GQT A;  2O3G A;  2VFU A;  3NVV B;  4O95 A;  3JS8 A;  4PWB A;  2UUV A;  5I1V A;  3C0P A;  3NS1 B;  1N62 C;  5HQX A;  2Y3R A;  4PYT A;  2W55 A;  3AM9 A;  4OAL A;  3RJA A;  1V97 A;  3POP A;  3LLB A;  1FIQ B;  2BVF A;  4JAY A;  1W1S A;  3PQB A;  4HG0 A;  1MBT A;  2VFT A;  2P4P A;  5ADZ A;  3NVZ B;  1W1L A;  1N61 C;  1W1K A;  1UXY A;  3S1E A;  1FO4 A;  2IPI A;  4XLO A;  3KJM A;  1FFV C;  4PVK A;  2QPM A;  1ZXI C;  1WYG A;  2I0K A;  2BVG A;  2VFS A;  4PVH A;  3HRD C;  4JB1 A;  3S1F A;  5AE3 A;  5AE1 A;  5L6F A;  3RJ8 A;  4BC7 A;  2EXR A;  2PLI A;  2Q85 A;  1JRP A;  2OAI A;  4UD8 A;  2Y08 A;  2GQU A;  4BBY A;  1N5X A;  3HSU A;  4MLA A;  3DED A;  2WDW A;  5D79 A;  1ZR6 A;  1E8H A;  3FW8 A;  3S1D A;  3B9J B;  2W3R A;  3I99 A;  1T3Q C;  2BVH A;  3AMZ A;  5FXD A;  4BC9 A;  1AHU A;  1I19 A;  1DZN A;  1MBB A;  1DIQ A;  1QLT A;  2R2Z A;  2QKN A;  3FW7 A;  1AHV A;  2W54 A;  1E0Y A;  2NQW A;  1VAO A;  1W1Q A;  2PLS A;  1WVE A;  2W3S A;  3NRZ B;  1E8F A;  1N5W C;  1N63 C;  1RM6 B;  1N60 C;  2UUU A;  1QLU A;  2Y3S A;  3AN1 A;  2VFV A;  5FXE A;  3BW7 A;  3NVY B;  3D2J A;  1SB3 B;  1FFU C;  5L6G A;  5HMR A;  4PWC A;  2Y4G A;  2Q4W A;  3LAE A;  4PVE A;  4DNS A;  3D2H A;  4ML8 A;  3SR6 B;  3W8W A;  3S1C A;  3W8Z A;  4BCA A;  5FXP A;  2YVS A;  3EUB 3;  1DII A;  3ETR B;  3FW9 A;  4PZF A;  2VFR A;  5K8E A;  1AHZ A;  1HSK A;  1WVF A;  3GSY A;  3W8X A;  5I1W A;  3D2D A;  5FXF A;  2VAO A; 
#chains in the Genus database with same CATH homology
 2P3H A;  2MBR A;  5HHZ A;  1W1O A;  2E3T A;  3TSJ A;  1E8G A;  5AWV A;  4ZOH B;  5G5H B;  2P13 A;  1F0X A;  4EC3 A;  1JRO A;  1W1R A;  3FWA A;  5AE2 A;  1VDV A;  1W1J A;  2AXR A;  5G5G B;  1W1M A;  2RK5 A;  2R8D A;  3DQ0 A;  3TX1 A;  3VTE A;  4PVJ A;  3TSH A;  3PM9 A;  3NVW B;  2GQT A;  2O3G A;  2VFU A;  3NVV B;  4O95 A;  3JS8 A;  4PWB A;  2UUV A;  5I1V A;  3C0P A;  3NS1 B;  1N62 C;  5HQX A;  2Y3R A;  4PYT A;  2W55 A;  3AM9 A;  4OAL A;  3RJA A;  1V97 A;  3POP A;  3LLB A;  1FIQ B;  2BVF A;  4JAY A;  1W1S A;  3PQB A;  4HG0 A;  1MBT A;  2VFT A;  2P4P A;  5ADZ A;  3NVZ B;  1W1L A;  1N61 C;  1W1K A;  1UXY A;  3S1E A;  1FO4 A;  2IPI A;  4XLO A;  3KJM A;  1FFV C;  4PVK A;  2QPM A;  1ZXI C;  1WYG A;  2I0K A;  2BVG A;  2VFS A;  4PVH A;  3HRD C;  4JB1 A;  3S1F A;  5AE3 A;  5AE1 A;  5L6F A;  3RJ8 A;  4BC7 A;  2EXR A;  2PLI A;  2Q85 A;  1JRP A;  2OAI A;  4UD8 A;  2Y08 A;  2GQU A;  4BBY A;  1N5X A;  3HSU A;  4MLA A;  3DED A;  2WDW A;  5D79 A;  1ZR6 A;  1E8H A;  3FW8 A;  3S1D A;  3B9J B;  2W3R A;  3I99 A;  1T3Q C;  2BVH A;  3AMZ A;  5FXD A;  4BC9 A;  1AHU A;  1I19 A;  1DZN A;  1MBB A;  1DIQ A;  1QLT A;  2R2Z A;  2QKN A;  3FW7 A;  1AHV A;  2W54 A;  1E0Y A;  2NQW A;  1VAO A;  1W1Q A;  2PLS A;  1WVE A;  2W3S A;  3NRZ B;  1E8F A;  1N5W C;  1N63 C;  1RM6 B;  1N60 C;  2UUU A;  1QLU A;  2Y3S A;  3AN1 A;  2VFV A;  5FXE A;  3BW7 A;  3NVY B;  3D2J A;  1SB3 B;  1FFU C;  5L6G A;  5HMR A;  4PWC A;  2Y4G A;  2Q4W A;  3LAE A;  4PVE A;  4DNS A;  3D2H A;  4ML8 A;  3SR6 B;  3W8W A;  3S1C A;  3W8Z A;  4BCA A;  5FXP A;  2YVS A;  3EUB 3;  1DII A;  3ETR B;  3FW9 A;  4PZF A;  2VFR A;  5K8E A;  1AHZ A;  1HSK A;  1WVF A;  3GSY A;  3W8X A;  5I1W A;  3D2D A;  5FXF A;  2VAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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