5K8EA

Xylooligosaccharide oxidase from myceliophthora thermophila c1
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
total genus 151
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5k8eA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5k8eA02
5AWVA 2Y4GA 3D2DA 3FWAA 3TSJA 4UD8A 2UUUA 3FW9A 3D2HA 3TSHA 3RJ8A 3PQBA 4XLOA 3VTEA 5I1VA 2Y08A 5I1WA 4PVHA 2BVFA 4PVEA 2AXRA 3POPA 3W8WA 3HSUA 2WDWA 4DNSA 3D2JA 4PVKA 4PWBA 2Y3RA 2IPIA 3W8XA 4PZFA 3W8ZA 5D79A 2BVHA 5L6FA 2Y3SA 4EC3A 2UUVA 5L6GA 3GSYA 1ZR6A 2BVGA 3FW8A 4PWCA 3FW7A 3RJAA 4PVJA 5K8EA
chains in the Genus database with same CATH superfamily
5AWVA 3B9JB 2R8DA 1RM6B 1W1QA 3TSHA 1N62C 3PQBA 5I1VA 1JROA 1E0YA 3W8WA 1QLTA 2W55A 1N63C 4BC9A 2Y3RA 2IPIA 4ML8A 5L6FA 4EC3A 2UUVA 1VDVA 4HG0A 1N5XA 3DEDA 1FO4A 4OALA 4BBYA 4PWCA 3FW7A 1JRPA 1QLUA 2Y4GA 3NVYB 3PM9A 5K8EA 2W54A 1T3QC 3FWAA 3NVZB 2VFSA 2UUUA 3KJMA 2QPMA 1MBTA 3HRDC 3VTEA 2Y08A 1AHZA 1VAOA 3AM9A 2BVFA 1FFVC 3JS8A 2QKNA 5ADZA 1E8FA 2I0KA 3BW7A 3EUB3 4PWBA 2YVSA 4O95A 2P4PA 2VFRA 4MLAA 2Y3SA 1WYGA 5L6GA 2NQWA 2BVGA 1DIQA 1W1OA 3S1EA 1N5WC 1DZNA 4PVJA 5G5HB 3LAEA 3I99A 3TSJA 1I19A 1AHVA 5AE3A 3FW9A 3RJ8A 5G5GB 2EXRA 3C0PA 2VAOA 4PYTA 3ETRB 1UXYA 2MBRA 3DQ0A 2WDWA 5HHZA 1DIIA 3D2JA 3S1FA 1AHUA 4PVKA 5FXPA 3W8XA 2W3SA 4PZFA 5HQXA 1HSKA 3TX1A 2Q4WA 5D79A 5AE2A 3S1CA 2BVHA 2R2ZA 1SB3B 1W1JA 3LLBA 2VFUA 4JAYA 3GSYA 1ZR6A 1MBBA 3RJAA 1E8GA 3AMZA 1WVFA 3S1DA 2PLSA 1W1RA 3NS1B 3D2DA 1N60C 5FXFA 4UD8A 2P3HA 3D2HA 1E8HA 2GQTA 4XLOA 3AN1A 5I1WA 2Q85A 1FFUC 4PVHA 1W1MA 4PVEA 1ZXIC 2AXRA 2P13A 2W3RA 3POPA 4BC7A 3HSUA 1F0XA 4BCAA 4DNSA 3NRZB 1W1SA 1W1LA 2E3TA 1N61C 3SR6B 3W8ZA 1W1KA 4ZOHB 3NVVB 5HMRA 5FXDA 1WVEA 2RK5A 2VFTA 1V97A 2GQUA 3FW8A 5AE1A 4JB1A 1FIQB 3NVWB 2OAIA 2VFVA 5FXEA 2O3GA 2PLIA
chains in the Genus database with same CATH topology
5AWVA 3B9JB 2R8DA 1RM6B 1W1QA 3TSHA 1N62C 3PQBA 5I1VA 1JROA 1E0YA 3W8WA 1QLTA 2W55A 1N63C 4BC9A 2Y3RA 2IPIA 4ML8A 5L6FA 4EC3A 2UUVA 1VDVA 4HG0A 1N5XA 3DEDA 1FO4A 4OALA 4BBYA 4PWCA 3FW7A 1JRPA 1QLUA 2Y4GA 3NVYB 3PM9A 5K8EA 2W54A 1T3QC 3FWAA 3NVZB 2VFSA 2UUUA 3KJMA 2QPMA 1MBTA 3HRDC 3VTEA 2Y08A 1AHZA 1VAOA 3AM9A 2BVFA 1FFVC 3JS8A 2QKNA 5ADZA 1E8FA 2I0KA 3BW7A 3EUB3 4PWBA 2YVSA 4O95A 2P4PA 2VFRA 4MLAA 2Y3SA 1WYGA 5L6GA 2NQWA 2BVGA 1DIQA 1W1OA 3S1EA 1N5WC 1DZNA 4PVJA 5G5HB 3LAEA 3I99A 3TSJA 1I19A 1AHVA 5AE3A 3FW9A 3RJ8A 5G5GB 2EXRA 3C0PA 2VAOA 4PYTA 3ETRB 1UXYA 2MBRA 3DQ0A 2WDWA 5HHZA 1DIIA 3D2JA 3S1FA 1AHUA 4PVKA 5FXPA 3W8XA 2W3SA 4PZFA 5HQXA 1HSKA 3TX1A 2Q4WA 5D79A 5AE2A 3S1CA 2BVHA 2R2ZA 1SB3B 1W1JA 3LLBA 2VFUA 4JAYA 3GSYA 1ZR6A 1MBBA 3RJAA 1E8GA 3AMZA 1WVFA 3S1DA 2PLSA 1W1RA 3NS1B 3D2DA 1N60C 5FXFA 4UD8A 2P3HA 3D2HA 1E8HA 2GQTA 4XLOA 3AN1A 5I1WA 2Q85A 1FFUC 4PVHA 1W1MA 4PVEA 1ZXIC 2AXRA 2P13A 2W3RA 3POPA 4BC7A 3HSUA 1F0XA 4BCAA 4DNSA 3NRZB 1W1SA 1W1LA 2E3TA 1N61C 3SR6B 3W8ZA 1W1KA 4ZOHB 3NVVB 5HMRA 5FXDA 1WVEA 2RK5A 2VFTA 1V97A 2GQUA 3FW8A 5AE1A 4JB1A 1FIQB 3NVWB 2OAIA 2VFVA 5FXEA 2O3GA 2PLIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AWV A;  2Y4G A;  3D2D A;  3FWA A;  3TSJ A;  4UD8 A;  2UUU A;  3FW9 A;  3D2H A;  3TSH A;  3RJ8 A;  3PQB A;  4XLO A;  3VTE A;  5I1V A;  2Y08 A;  5I1W A;  4PVH A;  2BVF A;  4PVE A;  2AXR A;  3POP A;  3W8W A;  3HSU A;  2WDW A;  4DNS A;  3D2J A;  4PVK A;  4PWB A;  2Y3R A;  2IPI A;  3W8X A;  4PZF A;  3W8Z A;  5D79 A;  2BVH A;  5L6F A;  2Y3S A;  4EC3 A;  2UUV A;  5L6G A;  3GSY A;  1ZR6 A;  2BVG A;  3FW8 A;  4PWC A;  3FW7 A;  3RJA A;  4PVJ A;  5K8E A; 
#chains in the Genus database with same CATH topology
 5AWV A;  3B9J B;  2R8D A;  1RM6 B;  1W1Q A;  3TSH A;  1N62 C;  3PQB A;  5I1V A;  1JRO A;  1E0Y A;  3W8W A;  1QLT A;  2W55 A;  1N63 C;  4BC9 A;  2Y3R A;  2IPI A;  4ML8 A;  5L6F A;  4EC3 A;  2UUV A;  1VDV A;  4HG0 A;  1N5X A;  3DED A;  1FO4 A;  4OAL A;  4BBY A;  4PWC A;  3FW7 A;  1JRP A;  1QLU A;  2Y4G A;  3NVY B;  3PM9 A;  5K8E A;  2W54 A;  1T3Q C;  3FWA A;  3NVZ B;  2VFS A;  2UUU A;  3KJM A;  2QPM A;  1MBT A;  3HRD C;  3VTE A;  2Y08 A;  1AHZ A;  1VAO A;  3AM9 A;  2BVF A;  1FFV C;  3JS8 A;  2QKN A;  5ADZ A;  1E8F A;  2I0K A;  3BW7 A;  3EUB 3;  4PWB A;  2YVS A;  4O95 A;  2P4P A;  2VFR A;  4MLA A;  2Y3S A;  1WYG A;  5L6G A;  2NQW A;  2BVG A;  1DIQ A;  1W1O A;  3S1E A;  1N5W C;  1DZN A;  4PVJ A;  5G5H B;  3LAE A;  3I99 A;  3TSJ A;  1I19 A;  1AHV A;  5AE3 A;  3FW9 A;  3RJ8 A;  5G5G B;  2EXR A;  3C0P A;  2VAO A;  4PYT A;  3ETR B;  1UXY A;  2MBR A;  3DQ0 A;  2WDW A;  5HHZ A;  1DII A;  3D2J A;  3S1F A;  1AHU A;  4PVK A;  5FXP A;  3W8X A;  2W3S A;  4PZF A;  5HQX A;  1HSK A;  3TX1 A;  2Q4W A;  5D79 A;  5AE2 A;  3S1C A;  2BVH A;  2R2Z A;  1SB3 B;  1W1J A;  3LLB A;  2VFU A;  4JAY A;  3GSY A;  1ZR6 A;  1MBB A;  3RJA A;  1E8G A;  3AMZ A;  1WVF A;  3S1D A;  2PLS A;  1W1R A;  3NS1 B;  3D2D A;  1N60 C;  5FXF A;  4UD8 A;  2P3H A;  3D2H A;  1E8H A;  2GQT A;  4XLO A;  3AN1 A;  5I1W A;  2Q85 A;  1FFU C;  4PVH A;  1W1M A;  4PVE A;  1ZXI C;  2AXR A;  2P13 A;  2W3R A;  3POP A;  4BC7 A;  3HSU A;  1F0X A;  4BCA A;  4DNS A;  3NRZ B;  1W1S A;  1W1L A;  2E3T A;  1N61 C;  3SR6 B;  3W8Z A;  1W1K A;  4ZOH B;  3NVV B;  5HMR A;  5FXD A;  1WVE A;  2RK5 A;  2VFT A;  1V97 A;  2GQU A;  3FW8 A;  5AE1 A;  4JB1 A;  1FIQ B;  3NVW B;  2OAI A;  2VFV A;  5FXE A;  2O3G A;  2PLI A; 
#chains in the Genus database with same CATH homology
 5AWV A;  3B9J B;  2R8D A;  1RM6 B;  1W1Q A;  3TSH A;  1N62 C;  3PQB A;  5I1V A;  1JRO A;  1E0Y A;  3W8W A;  1QLT A;  2W55 A;  1N63 C;  4BC9 A;  2Y3R A;  2IPI A;  4ML8 A;  5L6F A;  4EC3 A;  2UUV A;  1VDV A;  4HG0 A;  1N5X A;  3DED A;  1FO4 A;  4OAL A;  4BBY A;  4PWC A;  3FW7 A;  1JRP A;  1QLU A;  2Y4G A;  3NVY B;  3PM9 A;  5K8E A;  2W54 A;  1T3Q C;  3FWA A;  3NVZ B;  2VFS A;  2UUU A;  3KJM A;  2QPM A;  1MBT A;  3HRD C;  3VTE A;  2Y08 A;  1AHZ A;  1VAO A;  3AM9 A;  2BVF A;  1FFV C;  3JS8 A;  2QKN A;  5ADZ A;  1E8F A;  2I0K A;  3BW7 A;  3EUB 3;  4PWB A;  2YVS A;  4O95 A;  2P4P A;  2VFR A;  4MLA A;  2Y3S A;  1WYG A;  5L6G A;  2NQW A;  2BVG A;  1DIQ A;  1W1O A;  3S1E A;  1N5W C;  1DZN A;  4PVJ A;  5G5H B;  3LAE A;  3I99 A;  3TSJ A;  1I19 A;  1AHV A;  5AE3 A;  3FW9 A;  3RJ8 A;  5G5G B;  2EXR A;  3C0P A;  2VAO A;  4PYT A;  3ETR B;  1UXY A;  2MBR A;  3DQ0 A;  2WDW A;  5HHZ A;  1DII A;  3D2J A;  3S1F A;  1AHU A;  4PVK A;  5FXP A;  3W8X A;  2W3S A;  4PZF A;  5HQX A;  1HSK A;  3TX1 A;  2Q4W A;  5D79 A;  5AE2 A;  3S1C A;  2BVH A;  2R2Z A;  1SB3 B;  1W1J A;  3LLB A;  2VFU A;  4JAY A;  3GSY A;  1ZR6 A;  1MBB A;  3RJA A;  1E8G A;  3AMZ A;  1WVF A;  3S1D A;  2PLS A;  1W1R A;  3NS1 B;  3D2D A;  1N60 C;  5FXF A;  4UD8 A;  2P3H A;  3D2H A;  1E8H A;  2GQT A;  4XLO A;  3AN1 A;  5I1W A;  2Q85 A;  1FFU C;  4PVH A;  1W1M A;  4PVE A;  1ZXI C;  2AXR A;  2P13 A;  2W3R A;  3POP A;  4BC7 A;  3HSU A;  1F0X A;  4BCA A;  4DNS A;  3NRZ B;  1W1S A;  1W1L A;  2E3T A;  1N61 C;  3SR6 B;  3W8Z A;  1W1K A;  4ZOH B;  3NVV B;  5HMR A;  5FXD A;  1WVE A;  2RK5 A;  2VFT A;  1V97 A;  2GQU A;  3FW8 A;  5AE1 A;  4JB1 A;  1FIQ B;  3NVW B;  2OAI A;  2VFV A;  5FXE A;  2O3G A;  2PLI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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