5K8EA

Xylooligosaccharide oxidase from myceliophthora thermophila c1
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
total genus 151
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5k8eA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5k8eA02
5AWVA 3W8ZA 3FW9A 2IPIA 5I1WA 3FW8A 1ZR6A 3TSHA 3GSYA 3RJ8A 3FW7A 4PVKA 2Y3RA 3TSJA 4PZFA 2BVFA 4PWCA 2WDWA 4PWBA 3W8XA 5K8EA 3RJAA 2BVGA 3FWAA 4DNSA 2UUVA 4XLOA 4PVJA 2BVHA 2Y4GA 3D2JA 5I1VA 3W8WA 5D79A 3PQBA 4PVHA 3HSUA 2AXRA 4PVEA 2UUUA 3D2HA 4UD8A 3POPA 4EC3A 3D2DA 5L6FA 5L6GA 3VTEA 2Y08A 2Y3SA
chains in the Genus database with same CATH superfamily
2QPMA 2W54A 2GQUA 2Q4WA 1MBTA 1W1MA 2Y3RA 2EXRA 3TSJA 3JS8A 3NS1B 4PWCA 2WDWA 3TX1A 2R8DA 5G5HB 2VFSA 1N63C 2O3GA 5K8EA 4BC7A 4HG0A 2VFUA 5HMRA 4PVJA 5FXPA 1E8FA 3S1FA 1W1JA 1W1KA 2W3RA 2Q85A 5G5GB 1ZXIC 1WVEA 3EUB3 4ML8A 5FXFA 2W55A 1WYGA 3POPA 4OALA 3D2DA 2P3HA 2VAOA 2RK5A 2YVSA 2VFRA 3I99A 1I19A 3W8ZA 3FW9A 2PLIA 3ETRB 5I1WA 3AM9A 4PVKA 3S1DA 4PZFA 2GQTA 3BW7A 4JB1A 1MBBA 3NVVB 2VFTA 4BC9A 4DNSA 1W1SA 1W1QA 1AHUA 1FFVC 3W8WA 5D79A 1VDVA 2MBRA 3NVWB 4JAYA 3NRZB 3PQBA 4PVHA 3KJMA 1DZNA 3HSUA 3SR6B 1W1LA 2NQWA 4BBYA 3AN1A 2UUUA 3D2HA 4EC3A 1FO4A 5L6GA 1AHZA 3DEDA 2VFVA 2IPIA 3FW8A 2R2ZA 1QLUA 1ZR6A 3DQ0A 3GSYA 1N60C 3FW7A 3RJ8A 4O95A 2BVFA 4BCAA 3LLBA 5FXDA 1QLTA 1UXYA 1T3QC 2W3SA 2OAIA 1WVFA 1F0XA 1JROA 2BVGA 3FWAA 3RJAA 3S1CA 2UUVA 4XLOA 2I0KA 5AE1A 3B9JB 1FIQB 1E8GA 1E8HA 2PLSA 1HSKA 4ZOHB 2QKNA 3HRDC 3LAEA 3VTEA 3PM9A 2Y3SA 5HQXA 1SB3B 5AWVA 1V97A 3C0PA 2P4PA 3TSHA 5HHZA 5AE3A 1FFUC 4PWBA 4PYTA 3W8XA 3AMZA 1N5WC 1W1OA 2E3TA 1N5XA 5ADZA 1N62C 1N61C 1AHVA 2BVHA 3S1EA 2Y4GA 5AE2A 3D2JA 5I1VA 1DIQA 2P13A 3NVYB 1RM6B 5FXEA 2AXRA 4MLAA 1W1RA 4PVEA 3NVZB 4UD8A 1JRPA 5L6FA 1E0YA 2Y08A 1DIIA 1VAOA
chains in the Genus database with same CATH topology
2QPMA 2W54A 2GQUA 2Q4WA 1MBTA 1W1MA 2Y3RA 2EXRA 3TSJA 3JS8A 3NS1B 4PWCA 2WDWA 3TX1A 2R8DA 5G5HB 2VFSA 1N63C 2O3GA 5K8EA 4BC7A 4HG0A 2VFUA 5HMRA 4PVJA 5FXPA 1E8FA 3S1FA 1W1JA 1W1KA 2W3RA 2Q85A 5G5GB 1ZXIC 1WVEA 3EUB3 4ML8A 5FXFA 2W55A 1WYGA 3POPA 4OALA 3D2DA 2P3HA 2VAOA 2RK5A 2YVSA 2VFRA 3I99A 1I19A 3W8ZA 3FW9A 2PLIA 3ETRB 5I1WA 3AM9A 4PVKA 3S1DA 4PZFA 2GQTA 3BW7A 4JB1A 1MBBA 3NVVB 2VFTA 4BC9A 4DNSA 1W1SA 1W1QA 1AHUA 1FFVC 3W8WA 5D79A 1VDVA 2MBRA 3NVWB 4JAYA 3NRZB 3PQBA 4PVHA 3KJMA 1DZNA 3HSUA 3SR6B 1W1LA 2NQWA 4BBYA 3AN1A 2UUUA 3D2HA 4EC3A 1FO4A 5L6GA 1AHZA 3DEDA 2VFVA 2IPIA 3FW8A 2R2ZA 1QLUA 1ZR6A 3DQ0A 3GSYA 1N60C 3FW7A 3RJ8A 4O95A 2BVFA 4BCAA 3LLBA 5FXDA 1QLTA 1UXYA 1T3QC 2W3SA 2OAIA 1WVFA 1F0XA 1JROA 2BVGA 3FWAA 3RJAA 3S1CA 2UUVA 4XLOA 2I0KA 5AE1A 3B9JB 1FIQB 1E8GA 1E8HA 2PLSA 1HSKA 4ZOHB 2QKNA 3HRDC 3LAEA 3VTEA 3PM9A 2Y3SA 5HQXA 1SB3B 5AWVA 1V97A 3C0PA 2P4PA 3TSHA 5HHZA 5AE3A 1FFUC 4PWBA 4PYTA 3W8XA 3AMZA 1N5WC 1W1OA 2E3TA 1N5XA 5ADZA 1N62C 1N61C 1AHVA 2BVHA 3S1EA 2Y4GA 5AE2A 3D2JA 5I1VA 1DIQA 2P13A 3NVYB 1RM6B 5FXEA 2AXRA 4MLAA 1W1RA 4PVEA 3NVZB 4UD8A 1JRPA 5L6FA 1E0YA 2Y08A 1DIIA 1VAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AWV A;  3W8Z A;  3FW9 A;  2IPI A;  5I1W A;  3FW8 A;  1ZR6 A;  3TSH A;  3GSY A;  3RJ8 A;  3FW7 A;  4PVK A;  2Y3R A;  3TSJ A;  4PZF A;  2BVF A;  4PWC A;  2WDW A;  4PWB A;  3W8X A;  5K8E A;  3RJA A;  2BVG A;  3FWA A;  4DNS A;  2UUV A;  4XLO A;  4PVJ A;  2BVH A;  2Y4G A;  3D2J A;  5I1V A;  3W8W A;  5D79 A;  3PQB A;  4PVH A;  3HSU A;  2AXR A;  4PVE A;  2UUU A;  3D2H A;  4UD8 A;  3POP A;  4EC3 A;  3D2D A;  5L6F A;  5L6G A;  3VTE A;  2Y08 A;  2Y3S A; 
#chains in the Genus database with same CATH topology
 2QPM A;  2W54 A;  2GQU A;  2Q4W A;  1MBT A;  1W1M A;  2Y3R A;  2EXR A;  3TSJ A;  3JS8 A;  3NS1 B;  4PWC A;  2WDW A;  3TX1 A;  2R8D A;  5G5H B;  2VFS A;  1N63 C;  2O3G A;  5K8E A;  4BC7 A;  4HG0 A;  2VFU A;  5HMR A;  4PVJ A;  5FXP A;  1E8F A;  3S1F A;  1W1J A;  1W1K A;  2W3R A;  2Q85 A;  5G5G B;  1ZXI C;  1WVE A;  3EUB 3;  4ML8 A;  5FXF A;  2W55 A;  1WYG A;  3POP A;  4OAL A;  3D2D A;  2P3H A;  2VAO A;  2RK5 A;  2YVS A;  2VFR A;  3I99 A;  1I19 A;  3W8Z A;  3FW9 A;  2PLI A;  3ETR B;  5I1W A;  3AM9 A;  4PVK A;  3S1D A;  4PZF A;  2GQT A;  3BW7 A;  4JB1 A;  1MBB A;  3NVV B;  2VFT A;  4BC9 A;  4DNS A;  1W1S A;  1W1Q A;  1AHU A;  1FFV C;  3W8W A;  5D79 A;  1VDV A;  2MBR A;  3NVW B;  4JAY A;  3NRZ B;  3PQB A;  4PVH A;  3KJM A;  1DZN A;  3HSU A;  3SR6 B;  1W1L A;  2NQW A;  4BBY A;  3AN1 A;  2UUU A;  3D2H A;  4EC3 A;  1FO4 A;  5L6G A;  1AHZ A;  3DED A;  2VFV A;  2IPI A;  3FW8 A;  2R2Z A;  1QLU A;  1ZR6 A;  3DQ0 A;  3GSY A;  1N60 C;  3FW7 A;  3RJ8 A;  4O95 A;  2BVF A;  4BCA A;  3LLB A;  5FXD A;  1QLT A;  1UXY A;  1T3Q C;  2W3S A;  2OAI A;  1WVF A;  1F0X A;  1JRO A;  2BVG A;  3FWA A;  3RJA A;  3S1C A;  2UUV A;  4XLO A;  2I0K A;  5AE1 A;  3B9J B;  1FIQ B;  1E8G A;  1E8H A;  2PLS A;  1HSK A;  4ZOH B;  2QKN A;  3HRD C;  3LAE A;  3VTE A;  3PM9 A;  2Y3S A;  5HQX A;  1SB3 B;  5AWV A;  1V97 A;  3C0P A;  2P4P A;  3TSH A;  5HHZ A;  5AE3 A;  1FFU C;  4PWB A;  4PYT A;  3W8X A;  3AMZ A;  1N5W C;  1W1O A;  2E3T A;  1N5X A;  5ADZ A;  1N62 C;  1N61 C;  1AHV A;  2BVH A;  3S1E A;  2Y4G A;  5AE2 A;  3D2J A;  5I1V A;  1DIQ A;  2P13 A;  3NVY B;  1RM6 B;  5FXE A;  2AXR A;  4MLA A;  1W1R A;  4PVE A;  3NVZ B;  4UD8 A;  1JRP A;  5L6F A;  1E0Y A;  2Y08 A;  1DII A;  1VAO A; 
#chains in the Genus database with same CATH homology
 2QPM A;  2W54 A;  2GQU A;  2Q4W A;  1MBT A;  1W1M A;  2Y3R A;  2EXR A;  3TSJ A;  3JS8 A;  3NS1 B;  4PWC A;  2WDW A;  3TX1 A;  2R8D A;  5G5H B;  2VFS A;  1N63 C;  2O3G A;  5K8E A;  4BC7 A;  4HG0 A;  2VFU A;  5HMR A;  4PVJ A;  5FXP A;  1E8F A;  3S1F A;  1W1J A;  1W1K A;  2W3R A;  2Q85 A;  5G5G B;  1ZXI C;  1WVE A;  3EUB 3;  4ML8 A;  5FXF A;  2W55 A;  1WYG A;  3POP A;  4OAL A;  3D2D A;  2P3H A;  2VAO A;  2RK5 A;  2YVS A;  2VFR A;  3I99 A;  1I19 A;  3W8Z A;  3FW9 A;  2PLI A;  3ETR B;  5I1W A;  3AM9 A;  4PVK A;  3S1D A;  4PZF A;  2GQT A;  3BW7 A;  4JB1 A;  1MBB A;  3NVV B;  2VFT A;  4BC9 A;  4DNS A;  1W1S A;  1W1Q A;  1AHU A;  1FFV C;  3W8W A;  5D79 A;  1VDV A;  2MBR A;  3NVW B;  4JAY A;  3NRZ B;  3PQB A;  4PVH A;  3KJM A;  1DZN A;  3HSU A;  3SR6 B;  1W1L A;  2NQW A;  4BBY A;  3AN1 A;  2UUU A;  3D2H A;  4EC3 A;  1FO4 A;  5L6G A;  1AHZ A;  3DED A;  2VFV A;  2IPI A;  3FW8 A;  2R2Z A;  1QLU A;  1ZR6 A;  3DQ0 A;  3GSY A;  1N60 C;  3FW7 A;  3RJ8 A;  4O95 A;  2BVF A;  4BCA A;  3LLB A;  5FXD A;  1QLT A;  1UXY A;  1T3Q C;  2W3S A;  2OAI A;  1WVF A;  1F0X A;  1JRO A;  2BVG A;  3FWA A;  3RJA A;  3S1C A;  2UUV A;  4XLO A;  2I0K A;  5AE1 A;  3B9J B;  1FIQ B;  1E8G A;  1E8H A;  2PLS A;  1HSK A;  4ZOH B;  2QKN A;  3HRD C;  3LAE A;  3VTE A;  3PM9 A;  2Y3S A;  5HQX A;  1SB3 B;  5AWV A;  1V97 A;  3C0P A;  2P4P A;  3TSH A;  5HHZ A;  5AE3 A;  1FFU C;  4PWB A;  4PYT A;  3W8X A;  3AMZ A;  1N5W C;  1W1O A;  2E3T A;  1N5X A;  5ADZ A;  1N62 C;  1N61 C;  1AHV A;  2BVH A;  3S1E A;  2Y4G A;  5AE2 A;  3D2J A;  5I1V A;  1DIQ A;  2P13 A;  3NVY B;  1RM6 B;  5FXE A;  2AXR A;  4MLA A;  1W1R A;  4PVE A;  3NVZ B;  4UD8 A;  1JRP A;  5L6F A;  1E0Y A;  2Y08 A;  1DII A;  1VAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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