5K8EA

Xylooligosaccharide oxidase from myceliophthora thermophila c1
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule tags Oxidoreductase
total genus 151
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5k8eA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5k8eA02
2WDWA 5I1WA 3TSJA 4UD8A 2IPIA 3D2HA 4PVHA 3FW7A 3PQBA 3VTEA 5AWVA 3W8WA 2BVGA 4PWCA 3D2JA 4PVEA 2Y4GA 3W8XA 3RJ8A 3FWAA 5L6GA 3D2DA 4PZFA 2Y3RA 4DNSA 5D79A 3FW8A 4PVKA 3RJAA 2Y3SA 4PWBA 3HSUA 3POPA 5K8EA 3FW9A 2Y08A 2BVFA 3GSYA 2AXRA 1ZR6A 3W8ZA 2BVHA 5L6FA 3TSHA 4XLOA 4EC3A 2UUUA 2UUVA 5I1VA 4PVJA
chains in the Genus database with same CATH superfamily
2WDWA 5FXPA 5I1WA 2NQWA 3D2HA 4PVHA 3C0PA 3PQBA 3S1DA 1VAOA 5AWVA 1JRPA 3SR6B 2P3HA 1JROA 4JB1A 3W8XA 1W1QA 5L6GA 5G5HB 2PLSA 4DNSA 1N60C 2MBRA 2Y3SA 3NVYB 2Y08A 2BVFA 2QKNA 3DQ0A 3GSYA 1W1LA 2BVHA 3NVWB 1W1MA 2O3GA 1DIQA 2RK5A 4XLOA 2UUUA 5I1VA 1QLTA 3BW7A 3HRDC 3JS8A 1AHVA 5AE3A 5HMRA 3AN1A 3TSJA 1UXYA 4BC9A 1N61C 3FW7A 1E8HA 3AMZA 3KJMA 3VTEA 4O95A 3W8WA 2BVGA 2P13A 4PWCA 4PVEA 2Y4GA 5AE2A 2VFVA 4BBYA 2VFTA 4JAYA 3D2DA 1W1JA 2Y3RA 5HHZA 4PVKA 1N5XA 4PWBA 1DZNA 3PM9A 5K8EA 1FO4A 1WYGA 2W55A 1ZR6A 4HG0A 3W8ZA 1W1SA 5FXFA 4EC3A 1WVFA 2UUVA 2VAOA 2W54A 1RM6B 3B9JB 4UD8A 3TX1A 2EXRA 1AHZA 4OALA 4MLAA 5G5GB 2PLIA 3NS1B 3D2JA 5ADZA 2W3SA 1E8FA 1F0XA 3NVZB 3EUB3 2VFRA 2I0KA 4PZFA 2W3RA 5D79A 5HQXA 3FW8A 3S1CA 2GQUA 2R8DA 3HSUA 3POPA 1N63C 1W1RA 3DEDA 1FIQB 1E8GA 1N5WC 1T3QC 3NRZB 2QPMA 1WVEA 2YVSA 3I99A 1MBBA 3ETRB 3LAEA 5L6FA 1V97A 4BC7A 1I19A 4BCAA 4PVJA 1DIIA 2E3TA 4ML8A 1SB3B 1AHUA 4ZOHB 2IPIA 5AE1A 1MBTA 2GQTA 2OAIA 2VFUA 3AM9A 1FFVC 3NVVB 2P4PA 3RJ8A 1ZXIC 3FWAA 1FFUC 5FXDA 3S1FA 1VDVA 3S1EA 1QLUA 3RJAA 1E0YA 4PYTA 3FW9A 2Q4WA 2Q85A 2AXRA 3LLBA 1HSKA 5FXEA 3TSHA 1W1OA 2R2ZA 1N62C 2VFSA 1W1KA
chains in the Genus database with same CATH topology
2WDWA 5FXPA 5I1WA 2NQWA 3D2HA 4PVHA 3C0PA 3PQBA 3S1DA 1VAOA 5AWVA 1JRPA 3SR6B 2P3HA 1JROA 4JB1A 3W8XA 1W1QA 5L6GA 5G5HB 2PLSA 4DNSA 1N60C 2MBRA 2Y3SA 3NVYB 2Y08A 2BVFA 2QKNA 3DQ0A 3GSYA 1W1LA 2BVHA 3NVWB 1W1MA 2O3GA 1DIQA 2RK5A 4XLOA 2UUUA 5I1VA 1QLTA 3BW7A 3HRDC 3JS8A 1AHVA 5AE3A 5HMRA 3AN1A 3TSJA 1UXYA 4BC9A 1N61C 3FW7A 1E8HA 3AMZA 3KJMA 3VTEA 4O95A 3W8WA 2BVGA 2P13A 4PWCA 4PVEA 2Y4GA 5AE2A 2VFVA 4BBYA 2VFTA 4JAYA 3D2DA 1W1JA 2Y3RA 5HHZA 4PVKA 1N5XA 4PWBA 1DZNA 3PM9A 5K8EA 1FO4A 1WYGA 2W55A 1ZR6A 4HG0A 3W8ZA 1W1SA 5FXFA 4EC3A 1WVFA 2UUVA 2VAOA 2W54A 1RM6B 3B9JB 4UD8A 3TX1A 2EXRA 1AHZA 4OALA 4MLAA 5G5GB 2PLIA 3NS1B 3D2JA 5ADZA 2W3SA 1E8FA 1F0XA 3NVZB 3EUB3 2VFRA 2I0KA 4PZFA 2W3RA 5D79A 5HQXA 3FW8A 3S1CA 2GQUA 2R8DA 3HSUA 3POPA 1N63C 1W1RA 3DEDA 1FIQB 1E8GA 1N5WC 1T3QC 3NRZB 2QPMA 1WVEA 2YVSA 3I99A 1MBBA 3ETRB 3LAEA 5L6FA 1V97A 4BC7A 1I19A 4BCAA 4PVJA 1DIIA 2E3TA 4ML8A 1SB3B 1AHUA 4ZOHB 2IPIA 5AE1A 1MBTA 2GQTA 2OAIA 2VFUA 3AM9A 1FFVC 3NVVB 2P4PA 3RJ8A 1ZXIC 3FWAA 1FFUC 5FXDA 3S1FA 1VDVA 3S1EA 1QLUA 3RJAA 1E0YA 4PYTA 3FW9A 2Q4WA 2Q85A 2AXRA 3LLBA 1HSKA 5FXEA 3TSHA 1W1OA 2R2ZA 1N62C 2VFSA 1W1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDW A;  5I1W A;  3TSJ A;  4UD8 A;  2IPI A;  3D2H A;  4PVH A;  3FW7 A;  3PQB A;  3VTE A;  5AWV A;  3W8W A;  2BVG A;  4PWC A;  3D2J A;  4PVE A;  2Y4G A;  3W8X A;  3RJ8 A;  3FWA A;  5L6G A;  3D2D A;  4PZF A;  2Y3R A;  4DNS A;  5D79 A;  3FW8 A;  4PVK A;  3RJA A;  2Y3S A;  4PWB A;  3HSU A;  3POP A;  5K8E A;  3FW9 A;  2Y08 A;  2BVF A;  3GSY A;  2AXR A;  1ZR6 A;  3W8Z A;  2BVH A;  5L6F A;  3TSH A;  4XLO A;  4EC3 A;  2UUU A;  2UUV A;  5I1V A;  4PVJ A; 
#chains in the Genus database with same CATH topology
 2WDW A;  5FXP A;  5I1W A;  2NQW A;  3D2H A;  4PVH A;  3C0P A;  3PQB A;  3S1D A;  1VAO A;  5AWV A;  1JRP A;  3SR6 B;  2P3H A;  1JRO A;  4JB1 A;  3W8X A;  1W1Q A;  5L6G A;  5G5H B;  2PLS A;  4DNS A;  1N60 C;  2MBR A;  2Y3S A;  3NVY B;  2Y08 A;  2BVF A;  2QKN A;  3DQ0 A;  3GSY A;  1W1L A;  2BVH A;  3NVW B;  1W1M A;  2O3G A;  1DIQ A;  2RK5 A;  4XLO A;  2UUU A;  5I1V A;  1QLT A;  3BW7 A;  3HRD C;  3JS8 A;  1AHV A;  5AE3 A;  5HMR A;  3AN1 A;  3TSJ A;  1UXY A;  4BC9 A;  1N61 C;  3FW7 A;  1E8H A;  3AMZ A;  3KJM A;  3VTE A;  4O95 A;  3W8W A;  2BVG A;  2P13 A;  4PWC A;  4PVE A;  2Y4G A;  5AE2 A;  2VFV A;  4BBY A;  2VFT A;  4JAY A;  3D2D A;  1W1J A;  2Y3R A;  5HHZ A;  4PVK A;  1N5X A;  4PWB A;  1DZN A;  3PM9 A;  5K8E A;  1FO4 A;  1WYG A;  2W55 A;  1ZR6 A;  4HG0 A;  3W8Z A;  1W1S A;  5FXF A;  4EC3 A;  1WVF A;  2UUV A;  2VAO A;  2W54 A;  1RM6 B;  3B9J B;  4UD8 A;  3TX1 A;  2EXR A;  1AHZ A;  4OAL A;  4MLA A;  5G5G B;  2PLI A;  3NS1 B;  3D2J A;  5ADZ A;  2W3S A;  1E8F A;  1F0X A;  3NVZ B;  3EUB 3;  2VFR A;  2I0K A;  4PZF A;  2W3R A;  5D79 A;  5HQX A;  3FW8 A;  3S1C A;  2GQU A;  2R8D A;  3HSU A;  3POP A;  1N63 C;  1W1R A;  3DED A;  1FIQ B;  1E8G A;  1N5W C;  1T3Q C;  3NRZ B;  2QPM A;  1WVE A;  2YVS A;  3I99 A;  1MBB A;  3ETR B;  3LAE A;  5L6F A;  1V97 A;  4BC7 A;  1I19 A;  4BCA A;  4PVJ A;  1DII A;  2E3T A;  4ML8 A;  1SB3 B;  1AHU A;  4ZOH B;  2IPI A;  5AE1 A;  1MBT A;  2GQT A;  2OAI A;  2VFU A;  3AM9 A;  1FFV C;  3NVV B;  2P4P A;  3RJ8 A;  1ZXI C;  3FWA A;  1FFU C;  5FXD A;  3S1F A;  1VDV A;  3S1E A;  1QLU A;  3RJA A;  1E0Y A;  4PYT A;  3FW9 A;  2Q4W A;  2Q85 A;  2AXR A;  3LLB A;  1HSK A;  5FXE A;  3TSH A;  1W1O A;  2R2Z A;  1N62 C;  2VFS A;  1W1K A; 
#chains in the Genus database with same CATH homology
 2WDW A;  5FXP A;  5I1W A;  2NQW A;  3D2H A;  4PVH A;  3C0P A;  3PQB A;  3S1D A;  1VAO A;  5AWV A;  1JRP A;  3SR6 B;  2P3H A;  1JRO A;  4JB1 A;  3W8X A;  1W1Q A;  5L6G A;  5G5H B;  2PLS A;  4DNS A;  1N60 C;  2MBR A;  2Y3S A;  3NVY B;  2Y08 A;  2BVF A;  2QKN A;  3DQ0 A;  3GSY A;  1W1L A;  2BVH A;  3NVW B;  1W1M A;  2O3G A;  1DIQ A;  2RK5 A;  4XLO A;  2UUU A;  5I1V A;  1QLT A;  3BW7 A;  3HRD C;  3JS8 A;  1AHV A;  5AE3 A;  5HMR A;  3AN1 A;  3TSJ A;  1UXY A;  4BC9 A;  1N61 C;  3FW7 A;  1E8H A;  3AMZ A;  3KJM A;  3VTE A;  4O95 A;  3W8W A;  2BVG A;  2P13 A;  4PWC A;  4PVE A;  2Y4G A;  5AE2 A;  2VFV A;  4BBY A;  2VFT A;  4JAY A;  3D2D A;  1W1J A;  2Y3R A;  5HHZ A;  4PVK A;  1N5X A;  4PWB A;  1DZN A;  3PM9 A;  5K8E A;  1FO4 A;  1WYG A;  2W55 A;  1ZR6 A;  4HG0 A;  3W8Z A;  1W1S A;  5FXF A;  4EC3 A;  1WVF A;  2UUV A;  2VAO A;  2W54 A;  1RM6 B;  3B9J B;  4UD8 A;  3TX1 A;  2EXR A;  1AHZ A;  4OAL A;  4MLA A;  5G5G B;  2PLI A;  3NS1 B;  3D2J A;  5ADZ A;  2W3S A;  1E8F A;  1F0X A;  3NVZ B;  3EUB 3;  2VFR A;  2I0K A;  4PZF A;  2W3R A;  5D79 A;  5HQX A;  3FW8 A;  3S1C A;  2GQU A;  2R8D A;  3HSU A;  3POP A;  1N63 C;  1W1R A;  3DED A;  1FIQ B;  1E8G A;  1N5W C;  1T3Q C;  3NRZ B;  2QPM A;  1WVE A;  2YVS A;  3I99 A;  1MBB A;  3ETR B;  3LAE A;  5L6F A;  1V97 A;  4BC7 A;  1I19 A;  4BCA A;  4PVJ A;  1DII A;  2E3T A;  4ML8 A;  1SB3 B;  1AHU A;  4ZOH B;  2IPI A;  5AE1 A;  1MBT A;  2GQT A;  2OAI A;  2VFU A;  3AM9 A;  1FFV C;  3NVV B;  2P4P A;  3RJ8 A;  1ZXI C;  3FWA A;  1FFU C;  5FXD A;  3S1F A;  1VDV A;  3S1E A;  1QLU A;  3RJA A;  1E0Y A;  4PYT A;  3FW9 A;  2Q4W A;  2Q85 A;  2AXR A;  3LLB A;  1HSK A;  5FXE A;  3TSH A;  1W1O A;  2R2Z A;  1N62 C;  2VFS A;  1W1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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