1ZR6A

The crystal structure of an acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords glucooligosaccharide oxidase
publication title Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD
pubmed doi rcsb
source organism Acremonium strictum
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1zr6A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1zr6A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 1zr6A03
2GQTA 5K8EA 2YVSA 1N62C 1W1RA 3LLBA 3D2JA 3FWAA 4XLOA 1MBBA 3BW7A 3ETRB 2IPIA 2VFTA 5AE1A 4BC7A 2BVGA 4PWCA 3HSUA 1AHVA 3FW8A 4PVKA 2AXRA 2MBRA 1W1MA 1WYGA 3S1CA 3FW9A 4ML8A 3FW7A 2VFVA 2Y4GA 5L6FA 1QLTA 4HG0A 4BBYA 3S1FA 2W54A 3S1DA 2Y3RA 1WVEA 2Q4WA 1FIQB 5ADZA 1QLUA 2QKNA 2W55A 1F0XA 3PM9A 1MBTA 5FXPA 2Y3SA 2QPMA 2VFRA 5FXDA 2P13A 5I1WA 2RK5A 1HSKA 1E8FA 4JAYA 1E8HA 4EC3A 4PVHA 1JROA 3C0PA 1W1KA 1FFVC 3AM9A 3TSJA 1W1QA 5FXEA 2Q85A 3W8ZA 1ZXIC 1T3QC 2PLSA 3DEDA 1AHUA 1W1JA 3W8WA 3EUB3 5D79A 1I19A 1W1SA 4BC9A 4PZFA 3VTEA 1N5XA 3KJMA 1W1LA 3NVWB 1UXYA 3AMZA 3RJ8A 5HMRA 4PVJA 2BVFA 1E0YA 2NQWA 2W3SA 1JRPA 5L6GA 1VAOA 4BCAA 5AE2A 1W1OA 2I0KA 5HQXA 1RM6B 3B9JB 2Y08A 1FO4A 2R2ZA 3D2DA 3D2HA 3I99A 3TX1A 2P4PA 4O95A 5G5HB 2P3HA 2O3GA 1DIIA 2VAOA 2WDWA 3JS8A 1VDVA 1E8GA 3NVZB 3NVVB 3PQBA 1WVFA 3LAEA 2GQUA 5G5GB 3NRZB 4ZOHB 1ZR6A 3GSYA 4PVEA 3W8XA 3NVYB 5FXFA 2E3TA 1DZNA 1V97A 5AWVA 4JB1A 4OALA 3POPA 3SR6B 3AN1A 4PYTA 1FFUC 1N61C 5AE3A 2PLIA 3DQ0A 1N60C 2VFUA 4PWBA 3RJAA 1N63C 3TSHA 2W3RA 3HRDC 1SB3B 2OAIA 4DNSA 2R8DA 5I1VA 1N5WC 3NS1B 2EXRA 1AHZA 5HHZA 4UD8A 4MLAA 2VFSA 3S1EA 2BVHA 1DIQA
chains in the Genus database with same CATH superfamily
2GQTA 5K8EA 2YVSA 1N62C 1W1RA 3LLBA 3D2JA 3FWAA 4XLOA 1MBBA 3BW7A 3ETRB 2IPIA 2VFTA 5AE1A 4BC7A 2BVGA 2UUUA 4PWCA 3HSUA 1AHVA 3FW8A 4PVKA 2AXRA 2MBRA 1W1MA 1WYGA 3EJBB 3S1CA 3FW9A 4ML8A 3FW7A 2VFVA 2Y4GA 5L6FA 1QLTA 4HG0A 4BBYA 3S1FA 2W54A 3EJDB 3S1DA 2Y3RA 1WVEA 2Q4WA 1FIQB 5ADZA 1QLUA 2QKNA 2W55A 1F0XA 3PM9A 1MBTA 5FXPA 2Y3SA 2QPMA 2VFRA 5FXDA 2P13A 5I1WA 2RK5A 1HSKA 1E8FA 4JAYA 1E8HA 4EC3A 4PVHA 1JROA 3C0PA 1W1KA 1FFVC 3AM9A 3TSJA 1W1QA 5FXEA 2Q85A 3W8ZA 1ZXIC 1T3QC 2PLSA 3DEDA 1AHUA 1W1JA 3W8WA 3EUB3 5D79A 1I19A 1W1SA 4BC9A 4PZFA 3VTEA 1N5XA 3KJMA 1W1LA 3NVWB 1UXYA 3AMZA 3RJ8A 5HMRA 4PVJA 2BVFA 1E0YA 2NQWA 2W3SA 1JRPA 5L6GA 1VAOA 4BCAA 5AE2A 1W1OA 2I0KA 5HQXA 1RM6B 3B9JB 2Y08A 1FO4A 2R2ZA 3D2DA 3D2HA 3I99A 3TX1A 2P4PA 4O95A 5G5HB 2P3HA 2O3GA 3EJEB 1DIIA 2VAOA 2WDWA 3JS8A 1VDVA 1E8GA 3NVVB 3NVZB 3PQBA 1WVFA 3LAEA 2GQUA 5G5GB 3NRZB 4ZOHB 1ZR6A 3GSYA 4PVEA 3NVYB 3W8XA 5FXFA 2E3TA 1DZNA 1V97A 5AWVA 4JB1A 4OALA 3POPA 3SR6B 3AN1A 4PYTA 1FFUC 1N61C 5AE3A 2PLIA 3DQ0A 1N60C 2VFUA 4PWBA 3RJAA 1N63C 3TSHA 2W3RA 2UUVA 3HRDC 1SB3B 2OAIA 4DNSA 2R8DA 5I1VA 1N5WC 3NS1B 2EXRA 1AHZA 5HHZA 4UD8A 4MLAA 2VFSA 3S1EA 2BVHA 1DIQA
chains in the Genus database with same CATH topology
2GQTA 5K8EA 2YVSA 1N62C 1W1RA 3LLBA 3D2JA 3FWAA 4XLOA 1MBBA 3BW7A 3ETRB 2IPIA 2VFTA 5AE1A 4BC7A 2BVGA 2UUUA 4PWCA 3HSUA 1AHVA 3FW8A 4PVKA 2AXRA 2MBRA 1W1MA 1WYGA 3S1CA 3FW9A 4ML8A 3FW7A 2VFVA 2Y4GA 5L6FA 1QLTA 4HG0A 4BBYA 3S1FA 2W54A 3S1DA 2Y3RA 1WVEA 2Q4WA 1FIQB 5ADZA 1QLUA 2QKNA 2W55A 1F0XA 3PM9A 1MBTA 5FXPA 2Y3SA 2QPMA 2VFRA 5FXDA 2P13A 5I1WA 2RK5A 1HSKA 1E8FA 4JAYA 1E8HA 4EC3A 4PVHA 1JROA 3C0PA 1W1KA 1FFVC 3AM9A 3TSJA 1W1QA 5FXEA 2Q85A 3W8ZA 1ZXIC 1T3QC 2PLSA 3DEDA 1AHUA 1W1JA 3W8WA 3EUB3 5D79A 1I19A 1W1SA 4BC9A 4PZFA 3VTEA 1N5XA 3KJMA 1W1LA 3NVWB 1UXYA 3AMZA 3RJ8A 5HMRA 4PVJA 2BVFA 1E0YA 2NQWA 2W3SA 1JRPA 5L6GA 1VAOA 4BCAA 5AE2A 1W1OA 2I0KA 5HQXA 1RM6B 3B9JB 2Y08A 1FO4A 2R2ZA 3D2DA 3D2HA 3I99A 3TX1A 2P4PA 4O95A 5G5HB 2P3HA 2O3GA 1DIIA 2VAOA 2WDWA 3JS8A 1VDVA 1E8GA 3NVZB 3NVVB 3PQBA 1WVFA 3LAEA 2GQUA 5G5GB 3NRZB 4ZOHB 1ZR6A 3GSYA 4PVEA 3W8XA 3NVYB 5FXFA 2E3TA 1DZNA 1V97A 5AWVA 4JB1A 4OALA 3POPA 3SR6B 3AN1A 4PYTA 1FFUC 1N61C 5AE3A 2PLIA 3DQ0A 1N60C 2VFUA 4PWBA 3RJAA 1N63C 3TSHA 2W3RA 2UUVA 3HRDC 1SB3B 2OAIA 4DNSA 2R8DA 5I1VA 1N5WC 3NS1B 2EXRA 1AHZA 5HHZA 4UD8A 4MLAA 2VFSA 3S1EA 2BVHA 1DIQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GQT A;  5K8E A;  2YVS A;  1N62 C;  1W1R A;  3LLB A;  3D2J A;  3FWA A;  4XLO A;  1MBB A;  3BW7 A;  3ETR B;  2IPI A;  2VFT A;  5AE1 A;  4BC7 A;  2BVG A;  4PWC A;  3HSU A;  1AHV A;  3FW8 A;  4PVK A;  2AXR A;  2MBR A;  1W1M A;  1WYG A;  3S1C A;  3FW9 A;  4ML8 A;  3FW7 A;  2VFV A;  2Y4G A;  5L6F A;  1QLT A;  4HG0 A;  4BBY A;  3S1F A;  2W54 A;  3S1D A;  2Y3R A;  1WVE A;  2Q4W A;  1FIQ B;  5ADZ A;  1QLU A;  2QKN A;  2W55 A;  1F0X A;  3PM9 A;  1MBT A;  5FXP A;  2Y3S A;  2QPM A;  2VFR A;  5FXD A;  2P13 A;  5I1W A;  2RK5 A;  1HSK A;  1E8F A;  4JAY A;  1E8H A;  4EC3 A;  4PVH A;  1JRO A;  3C0P A;  1W1K A;  1FFV C;  3AM9 A;  3TSJ A;  1W1Q A;  5FXE A;  2Q85 A;  3W8Z A;  1ZXI C;  1T3Q C;  2PLS A;  3DED A;  1AHU A;  1W1J A;  3W8W A;  3EUB 3;  5D79 A;  1I19 A;  1W1S A;  4BC9 A;  4PZF A;  3VTE A;  1N5X A;  3KJM A;  1W1L A;  3NVW B;  1UXY A;  3AMZ A;  3RJ8 A;  5HMR A;  4PVJ A;  2BVF A;  1E0Y A;  2NQW A;  2W3S A;  1JRP A;  5L6G A;  1VAO A;  4BCA A;  5AE2 A;  1W1O A;  2I0K A;  5HQX A;  1RM6 B;  3B9J B;  2Y08 A;  1FO4 A;  2R2Z A;  3D2D A;  3D2H A;  3I99 A;  3TX1 A;  2P4P A;  4O95 A;  5G5H B;  2P3H A;  2O3G A;  1DII A;  2VAO A;  2WDW A;  3JS8 A;  1VDV A;  1E8G A;  3NVZ B;  3NVV B;  3PQB A;  1WVF A;  3LAE A;  2GQU A;  5G5G B;  3NRZ B;  4ZOH B;  1ZR6 A;  3GSY A;  4PVE A;  3W8X A;  3NVY B;  5FXF A;  2E3T A;  1DZN A;  1V97 A;  5AWV A;  4JB1 A;  4OAL A;  3POP A;  3SR6 B;  3AN1 A;  4PYT A;  1FFU C;  1N61 C;  5AE3 A;  2PLI A;  3DQ0 A;  1N60 C;  2VFU A;  4PWB A;  3RJA A;  1N63 C;  3TSH A;  2W3R A;  3HRD C;  1SB3 B;  2OAI A;  4DNS A;  2R8D A;  5I1V A;  1N5W C;  3NS1 B;  2EXR A;  1AHZ A;  5HHZ A;  4UD8 A;  4MLA A;  2VFS A;  3S1E A;  2BVH A;  1DIQ A; 
#chains in the Genus database with same CATH topology
 2GQT A;  5K8E A;  2YVS A;  1N62 C;  1W1R A;  3LLB A;  3D2J A;  3FWA A;  4XLO A;  1MBB A;  3BW7 A;  3ETR B;  2IPI A;  2VFT A;  5AE1 A;  4BC7 A;  2BVG A;  2UUU A;  4PWC A;  3HSU A;  1AHV A;  3FW8 A;  4PVK A;  2AXR A;  2MBR A;  1W1M A;  1WYG A;  3EJB B;  3S1C A;  3FW9 A;  4ML8 A;  3FW7 A;  2VFV A;  2Y4G A;  5L6F A;  1QLT A;  4HG0 A;  4BBY A;  3S1F A;  2W54 A;  3EJD B;  3S1D A;  2Y3R A;  1WVE A;  2Q4W A;  1FIQ B;  5ADZ A;  1QLU A;  2QKN A;  2W55 A;  1F0X A;  3PM9 A;  1MBT A;  5FXP A;  2Y3S A;  2QPM A;  2VFR A;  5FXD A;  2P13 A;  5I1W A;  2RK5 A;  1HSK A;  1E8F A;  4JAY A;  1E8H A;  4EC3 A;  4PVH A;  1JRO A;  3C0P A;  1W1K A;  1FFV C;  3AM9 A;  3TSJ A;  1W1Q A;  5FXE A;  2Q85 A;  3W8Z A;  1ZXI C;  1T3Q C;  2PLS A;  3DED A;  1AHU A;  1W1J A;  3W8W A;  3EUB 3;  5D79 A;  1I19 A;  1W1S A;  4BC9 A;  4PZF A;  3VTE A;  1N5X A;  3KJM A;  1W1L A;  3NVW B;  1UXY A;  3AMZ A;  3RJ8 A;  5HMR A;  4PVJ A;  2BVF A;  1E0Y A;  2NQW A;  2W3S A;  1JRP A;  5L6G A;  1VAO A;  4BCA A;  5AE2 A;  1W1O A;  2I0K A;  5HQX A;  1RM6 B;  3B9J B;  2Y08 A;  1FO4 A;  2R2Z A;  3D2D A;  3D2H A;  3I99 A;  3TX1 A;  2P4P A;  4O95 A;  5G5H B;  2P3H A;  2O3G A;  3EJE B;  1DII A;  2VAO A;  2WDW A;  3JS8 A;  1VDV A;  1E8G A;  3NVV B;  3NVZ B;  3PQB A;  1WVF A;  3LAE A;  2GQU A;  5G5G B;  3NRZ B;  4ZOH B;  1ZR6 A;  3GSY A;  4PVE A;  3NVY B;  3W8X A;  5FXF A;  2E3T A;  1DZN A;  1V97 A;  5AWV A;  4JB1 A;  4OAL A;  3POP A;  3SR6 B;  3AN1 A;  4PYT A;  1FFU C;  1N61 C;  5AE3 A;  2PLI A;  3DQ0 A;  1N60 C;  2VFU A;  4PWB A;  3RJA A;  1N63 C;  3TSH A;  2W3R A;  2UUV A;  3HRD C;  1SB3 B;  2OAI A;  4DNS A;  2R8D A;  5I1V A;  1N5W C;  3NS1 B;  2EXR A;  1AHZ A;  5HHZ A;  4UD8 A;  4MLA A;  2VFS A;  3S1E A;  2BVH A;  1DIQ A; 
#chains in the Genus database with same CATH homology
 2GQT A;  5K8E A;  2YVS A;  1N62 C;  1W1R A;  3LLB A;  3D2J A;  3FWA A;  4XLO A;  1MBB A;  3BW7 A;  3ETR B;  2IPI A;  2VFT A;  5AE1 A;  4BC7 A;  2BVG A;  2UUU A;  4PWC A;  3HSU A;  1AHV A;  3FW8 A;  4PVK A;  2AXR A;  2MBR A;  1W1M A;  1WYG A;  3S1C A;  3FW9 A;  4ML8 A;  3FW7 A;  2VFV A;  2Y4G A;  5L6F A;  1QLT A;  4HG0 A;  4BBY A;  3S1F A;  2W54 A;  3S1D A;  2Y3R A;  1WVE A;  2Q4W A;  1FIQ B;  5ADZ A;  1QLU A;  2QKN A;  2W55 A;  1F0X A;  3PM9 A;  1MBT A;  5FXP A;  2Y3S A;  2QPM A;  2VFR A;  5FXD A;  2P13 A;  5I1W A;  2RK5 A;  1HSK A;  1E8F A;  4JAY A;  1E8H A;  4EC3 A;  4PVH A;  1JRO A;  3C0P A;  1W1K A;  1FFV C;  3AM9 A;  3TSJ A;  1W1Q A;  5FXE A;  2Q85 A;  3W8Z A;  1ZXI C;  1T3Q C;  2PLS A;  3DED A;  1AHU A;  1W1J A;  3W8W A;  3EUB 3;  5D79 A;  1I19 A;  1W1S A;  4BC9 A;  4PZF A;  3VTE A;  1N5X A;  3KJM A;  1W1L A;  3NVW B;  1UXY A;  3AMZ A;  3RJ8 A;  5HMR A;  4PVJ A;  2BVF A;  1E0Y A;  2NQW A;  2W3S A;  1JRP A;  5L6G A;  1VAO A;  4BCA A;  5AE2 A;  1W1O A;  2I0K A;  5HQX A;  1RM6 B;  3B9J B;  2Y08 A;  1FO4 A;  2R2Z A;  3D2D A;  3D2H A;  3I99 A;  3TX1 A;  2P4P A;  4O95 A;  5G5H B;  2P3H A;  2O3G A;  1DII A;  2VAO A;  2WDW A;  3JS8 A;  1VDV A;  1E8G A;  3NVZ B;  3NVV B;  3PQB A;  1WVF A;  3LAE A;  2GQU A;  5G5G B;  3NRZ B;  4ZOH B;  1ZR6 A;  3GSY A;  4PVE A;  3W8X A;  3NVY B;  5FXF A;  2E3T A;  1DZN A;  1V97 A;  5AWV A;  4JB1 A;  4OAL A;  3POP A;  3SR6 B;  3AN1 A;  4PYT A;  1FFU C;  1N61 C;  5AE3 A;  2PLI A;  3DQ0 A;  1N60 C;  2VFU A;  4PWB A;  3RJA A;  1N63 C;  3TSH A;  2W3R A;  2UUV A;  3HRD C;  1SB3 B;  2OAI A;  4DNS A;  2R8D A;  5I1V A;  1N5W C;  3NS1 B;  2EXR A;  1AHZ A;  5HHZ A;  4UD8 A;  4MLA A;  2VFS A;  3S1E A;  2BVH A;  1DIQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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