1ZR6A

The crystal structure of an acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD
pubmed doi rcsb
source organism Acremonium strictum
molecule tags Oxidoreductase
molecule keywords glucooligosaccharide oxidase
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1zr6A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1zr6A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 1zr6A03
3FW8A 1T3QC 3RJ8A 1DZNA 4BC9A 2Y3SA 2RK5A 3W8WA 1W1SA 3TSJA 2QPMA 3POPA 1N63C 1N62C 5HMRA 2OAIA 3AMZA 1AHZA 1W1JA 1UXYA 2R2ZA 3NRZB 3VTEA 3TSHA 1N5WC 2BVHA 3S1CA 4HG0A 3W8XA 3S1EA 5AWVA 3PM9A 3EUB3 1E8HA 1I19A 4JB1A 2VFTA 2EXRA 3SR6B 3NVVB 2VFRA 1W1MA 4OALA 3W8ZA 1FFVC 4UD8A 3RJAA 3AN1A 1W1KA 3NVYB 4PVKA 4BCAA 2W3RA 2P13A 5AE2A 5ADZA 1MBBA 3DEDA 5FXPA 5HQXA 4BC7A 1ZXIC 2PLSA 3FW7A 2Q85A 1FO4A 3DQ0A 4PZFA 5FXEA 4DNSA 2P4PA 3GSYA 1AHVA 3BW7A 1E8FA 5I1VA 3HRDC 4EC3A 3D2JA 2VFUA 2Y08A 1DIQA 3FWAA 1F0XA 4PVEA 2VAOA 3ETRB 4PWBA 1HSKA 1FIQB 1N5XA 1E8GA 5AE3A 2R8DA 2PLIA 2AXRA 3HSUA 1FFUC 3PQBA 3TX1A 4PVJA 3JS8A 5G5HB 3S1DA 3I99A 2E3TA 2MBRA 4PWCA 2QKNA 5D79A 1VAOA 2GQTA 2W3SA 3D2HA 2W54A 1WYGA 3NVZB 3S1FA 2Y4GA 1MBTA 3LAEA 1QLTA 4XLOA 4MLAA 2BVGA 1N61C 3LLBA 5HHZA 3D2DA 2Q4WA 3C0PA 1N60C 3NVWB 4BBYA 1DIIA 1V97A 1JROA 3KJMA 2I0KA 2VFSA 4PYTA 2O3GA 1ZR6A 5K8EA 1QLUA 1E0YA 3AM9A 1W1QA 5FXDA 4JAYA 3NS1B 5AE1A 1JRPA 2IPIA 1W1RA 1WVEA 1AHUA 2VFVA 5G5GB 1W1OA 3FW9A 2WDWA 1RM6B 1VDVA 2W55A 1W1LA 5FXFA 4ZOHB 1WVFA 2GQUA 5L6GA 4PVHA 2Y3RA 3B9JB 2YVSA 5I1WA 1SB3B 4ML8A 4O95A 2P3HA 5L6FA 2BVFA 2NQWA
chains in the Genus database with same CATH superfamily
3FW8A 1T3QC 3RJ8A 1DZNA 4BC9A 2Y3SA 2RK5A 3W8WA 1W1SA 3TSJA 2QPMA 3POPA 1N63C 1N62C 5HMRA 2OAIA 2UUUA 3AMZA 1AHZA 1W1JA 1UXYA 2R2ZA 3NRZB 3VTEA 3TSHA 1N5WC 2BVHA 3S1CA 4HG0A 3W8XA 3S1EA 5AWVA 3PM9A 3EUB3 1E8HA 1I19A 4JB1A 2VFTA 2EXRA 3SR6B 3NVVB 2VFRA 1W1MA 4OALA 3W8ZA 1FFVC 4UD8A 3RJAA 3AN1A 1W1KA 3NVYB 4PVKA 4BCAA 2W3RA 2P13A 5AE2A 5ADZA 1MBBA 3DEDA 5FXPA 5HQXA 4BC7A 1ZXIC 2PLSA 3FW7A 2Q85A 1FO4A 3DQ0A 4PZFA 5FXEA 4DNSA 2P4PA 3GSYA 1AHVA 3BW7A 1E8FA 5I1VA 3HRDC 4EC3A 3D2JA 2VFUA 2UUVA 2Y08A 1DIQA 3FWAA 1F0XA 4PVEA 2VAOA 3ETRB 4PWBA 1HSKA 1FIQB 1N5XA 1E8GA 5AE3A 2R8DA 2PLIA 2AXRA 3HSUA 1FFUC 3PQBA 3TX1A 4PVJA 3JS8A 5G5HB 3S1DA 3I99A 2E3TA 2MBRA 4PWCA 2QKNA 5D79A 1VAOA 2GQTA 2W3SA 3D2HA 2W54A 1WYGA 3NVZB 3EJBB 3S1FA 1MBTA 2Y4GA 3LAEA 1QLTA 4XLOA 4MLAA 2BVGA 1N61C 3LLBA 5HHZA 3D2DA 2Q4WA 3C0PA 1N60C 3NVWB 4BBYA 1DIIA 1V97A 1JROA 3KJMA 2I0KA 2VFSA 4PYTA 2O3GA 1ZR6A 5K8EA 1QLUA 1E0YA 3AM9A 1W1QA 5FXDA 4JAYA 3NS1B 5AE1A 1JRPA 3EJEB 2IPIA 1W1RA 1WVEA 1AHUA 2VFVA 5G5GB 1W1OA 3FW9A 2WDWA 1RM6B 1VDVA 2W55A 1W1LA 5FXFA 4ZOHB 1WVFA 2GQUA 5L6GA 3EJDB 4PVHA 2Y3RA 3B9JB 2YVSA 5I1WA 1SB3B 4ML8A 4O95A 2P3HA 5L6FA 2BVFA 2NQWA
chains in the Genus database with same CATH topology
3FW8A 1T3QC 3RJ8A 1DZNA 4BC9A 2Y3SA 2RK5A 3W8WA 1W1SA 3TSJA 2QPMA 3POPA 1N63C 1N62C 5HMRA 2OAIA 2UUUA 3AMZA 1AHZA 1W1JA 1UXYA 2R2ZA 3NRZB 3VTEA 3TSHA 1N5WC 2BVHA 3S1CA 4HG0A 3W8XA 3S1EA 5AWVA 3PM9A 3EUB3 1E8HA 1I19A 4JB1A 2VFTA 2EXRA 3SR6B 3NVVB 2VFRA 1W1MA 4OALA 3W8ZA 1FFVC 4UD8A 3RJAA 3AN1A 1W1KA 3NVYB 4PVKA 4BCAA 2W3RA 2P13A 5AE2A 5ADZA 1MBBA 3DEDA 5FXPA 5HQXA 4BC7A 1ZXIC 2PLSA 3FW7A 2Q85A 1FO4A 3DQ0A 4PZFA 5FXEA 4DNSA 2P4PA 3GSYA 1AHVA 3BW7A 1E8FA 5I1VA 3HRDC 4EC3A 3D2JA 2VFUA 2UUVA 2Y08A 1DIQA 3FWAA 1F0XA 4PVEA 2VAOA 3ETRB 4PWBA 1HSKA 1FIQB 1N5XA 1E8GA 5AE3A 2R8DA 2PLIA 2AXRA 3HSUA 1FFUC 3PQBA 3TX1A 4PVJA 3JS8A 5G5HB 3S1DA 3I99A 2E3TA 2MBRA 4PWCA 2QKNA 5D79A 1VAOA 2GQTA 2W3SA 3D2HA 2W54A 1WYGA 3NVZB 3S1FA 2Y4GA 1MBTA 3LAEA 1QLTA 4XLOA 4MLAA 2BVGA 1N61C 3LLBA 5HHZA 3D2DA 2Q4WA 3C0PA 1N60C 3NVWB 4BBYA 1DIIA 1V97A 1JROA 3KJMA 2I0KA 2VFSA 4PYTA 2O3GA 1ZR6A 5K8EA 1QLUA 1E0YA 3AM9A 1W1QA 5FXDA 4JAYA 3NS1B 5AE1A 1JRPA 2IPIA 1W1RA 1WVEA 1AHUA 2VFVA 5G5GB 1W1OA 3FW9A 2WDWA 1RM6B 1VDVA 2W55A 1W1LA 5FXFA 4ZOHB 1WVFA 2GQUA 5L6GA 4PVHA 2Y3RA 3B9JB 2YVSA 5I1WA 1SB3B 4ML8A 4O95A 2P3HA 5L6FA 2BVFA 2NQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW8 A;  1T3Q C;  3RJ8 A;  1DZN A;  4BC9 A;  2Y3S A;  2RK5 A;  3W8W A;  1W1S A;  3TSJ A;  2QPM A;  3POP A;  1N63 C;  1N62 C;  5HMR A;  2OAI A;  3AMZ A;  1AHZ A;  1W1J A;  1UXY A;  2R2Z A;  3NRZ B;  3VTE A;  3TSH A;  1N5W C;  2BVH A;  3S1C A;  4HG0 A;  3W8X A;  3S1E A;  5AWV A;  3PM9 A;  3EUB 3;  1E8H A;  1I19 A;  4JB1 A;  2VFT A;  2EXR A;  3SR6 B;  3NVV B;  2VFR A;  1W1M A;  4OAL A;  3W8Z A;  1FFV C;  4UD8 A;  3RJA A;  3AN1 A;  1W1K A;  3NVY B;  4PVK A;  4BCA A;  2W3R A;  2P13 A;  5AE2 A;  5ADZ A;  1MBB A;  3DED A;  5FXP A;  5HQX A;  4BC7 A;  1ZXI C;  2PLS A;  3FW7 A;  2Q85 A;  1FO4 A;  3DQ0 A;  4PZF A;  5FXE A;  4DNS A;  2P4P A;  3GSY A;  1AHV A;  3BW7 A;  1E8F A;  5I1V A;  3HRD C;  4EC3 A;  3D2J A;  2VFU A;  2Y08 A;  1DIQ A;  3FWA A;  1F0X A;  4PVE A;  2VAO A;  3ETR B;  4PWB A;  1HSK A;  1FIQ B;  1N5X A;  1E8G A;  5AE3 A;  2R8D A;  2PLI A;  2AXR A;  3HSU A;  1FFU C;  3PQB A;  3TX1 A;  4PVJ A;  3JS8 A;  5G5H B;  3S1D A;  3I99 A;  2E3T A;  2MBR A;  4PWC A;  2QKN A;  5D79 A;  1VAO A;  2GQT A;  2W3S A;  3D2H A;  2W54 A;  1WYG A;  3NVZ B;  3S1F A;  2Y4G A;  1MBT A;  3LAE A;  1QLT A;  4XLO A;  4MLA A;  2BVG A;  1N61 C;  3LLB A;  5HHZ A;  3D2D A;  2Q4W A;  3C0P A;  1N60 C;  3NVW B;  4BBY A;  1DII A;  1V97 A;  1JRO A;  3KJM A;  2I0K A;  2VFS A;  4PYT A;  2O3G A;  1ZR6 A;  5K8E A;  1QLU A;  1E0Y A;  3AM9 A;  1W1Q A;  5FXD A;  4JAY A;  3NS1 B;  5AE1 A;  1JRP A;  2IPI A;  1W1R A;  1WVE A;  1AHU A;  2VFV A;  5G5G B;  1W1O A;  3FW9 A;  2WDW A;  1RM6 B;  1VDV A;  2W55 A;  1W1L A;  5FXF A;  4ZOH B;  1WVF A;  2GQU A;  5L6G A;  4PVH A;  2Y3R A;  3B9J B;  2YVS A;  5I1W A;  1SB3 B;  4ML8 A;  4O95 A;  2P3H A;  5L6F A;  2BVF A;  2NQW A; 
#chains in the Genus database with same CATH topology
 3FW8 A;  1T3Q C;  3RJ8 A;  1DZN A;  4BC9 A;  2Y3S A;  2RK5 A;  3W8W A;  1W1S A;  3TSJ A;  2QPM A;  3POP A;  1N63 C;  1N62 C;  5HMR A;  2OAI A;  2UUU A;  3AMZ A;  1AHZ A;  1W1J A;  1UXY A;  2R2Z A;  3NRZ B;  3VTE A;  3TSH A;  1N5W C;  2BVH A;  3S1C A;  4HG0 A;  3W8X A;  3S1E A;  5AWV A;  3PM9 A;  3EUB 3;  1E8H A;  1I19 A;  4JB1 A;  2VFT A;  2EXR A;  3SR6 B;  3NVV B;  2VFR A;  1W1M A;  4OAL A;  3W8Z A;  1FFV C;  4UD8 A;  3RJA A;  3AN1 A;  1W1K A;  3NVY B;  4PVK A;  4BCA A;  2W3R A;  2P13 A;  5AE2 A;  5ADZ A;  1MBB A;  3DED A;  5FXP A;  5HQX A;  4BC7 A;  1ZXI C;  2PLS A;  3FW7 A;  2Q85 A;  1FO4 A;  3DQ0 A;  4PZF A;  5FXE A;  4DNS A;  2P4P A;  3GSY A;  1AHV A;  3BW7 A;  1E8F A;  5I1V A;  3HRD C;  4EC3 A;  3D2J A;  2VFU A;  2UUV A;  2Y08 A;  1DIQ A;  3FWA A;  1F0X A;  4PVE A;  2VAO A;  3ETR B;  4PWB A;  1HSK A;  1FIQ B;  1N5X A;  1E8G A;  5AE3 A;  2R8D A;  2PLI A;  2AXR A;  3HSU A;  1FFU C;  3PQB A;  3TX1 A;  4PVJ A;  3JS8 A;  5G5H B;  3S1D A;  3I99 A;  2E3T A;  2MBR A;  4PWC A;  2QKN A;  5D79 A;  1VAO A;  2GQT A;  2W3S A;  3D2H A;  2W54 A;  1WYG A;  3NVZ B;  3EJB B;  3S1F A;  1MBT A;  2Y4G A;  3LAE A;  1QLT A;  4XLO A;  4MLA A;  2BVG A;  1N61 C;  3LLB A;  5HHZ A;  3D2D A;  2Q4W A;  3C0P A;  1N60 C;  3NVW B;  4BBY A;  1DII A;  1V97 A;  1JRO A;  3KJM A;  2I0K A;  2VFS A;  4PYT A;  2O3G A;  1ZR6 A;  5K8E A;  1QLU A;  1E0Y A;  3AM9 A;  1W1Q A;  5FXD A;  4JAY A;  3NS1 B;  5AE1 A;  1JRP A;  3EJE B;  2IPI A;  1W1R A;  1WVE A;  1AHU A;  2VFV A;  5G5G B;  1W1O A;  3FW9 A;  2WDW A;  1RM6 B;  1VDV A;  2W55 A;  1W1L A;  5FXF A;  4ZOH B;  1WVF A;  2GQU A;  5L6G A;  3EJD B;  4PVH A;  2Y3R A;  3B9J B;  2YVS A;  5I1W A;  1SB3 B;  4ML8 A;  4O95 A;  2P3H A;  5L6F A;  2BVF A;  2NQW A; 
#chains in the Genus database with same CATH homology
 3FW8 A;  1T3Q C;  3RJ8 A;  1DZN A;  4BC9 A;  2Y3S A;  2RK5 A;  3W8W A;  1W1S A;  3TSJ A;  2QPM A;  3POP A;  1N63 C;  1N62 C;  5HMR A;  2OAI A;  2UUU A;  3AMZ A;  1AHZ A;  1W1J A;  1UXY A;  2R2Z A;  3NRZ B;  3VTE A;  3TSH A;  1N5W C;  2BVH A;  3S1C A;  4HG0 A;  3W8X A;  3S1E A;  5AWV A;  3PM9 A;  3EUB 3;  1E8H A;  1I19 A;  4JB1 A;  2VFT A;  2EXR A;  3SR6 B;  3NVV B;  2VFR A;  1W1M A;  4OAL A;  3W8Z A;  1FFV C;  4UD8 A;  3RJA A;  3AN1 A;  1W1K A;  3NVY B;  4PVK A;  4BCA A;  2W3R A;  2P13 A;  5AE2 A;  5ADZ A;  1MBB A;  3DED A;  5FXP A;  5HQX A;  4BC7 A;  1ZXI C;  2PLS A;  3FW7 A;  2Q85 A;  1FO4 A;  3DQ0 A;  4PZF A;  5FXE A;  4DNS A;  2P4P A;  3GSY A;  1AHV A;  3BW7 A;  1E8F A;  5I1V A;  3HRD C;  4EC3 A;  3D2J A;  2VFU A;  2UUV A;  2Y08 A;  1DIQ A;  3FWA A;  1F0X A;  4PVE A;  2VAO A;  3ETR B;  4PWB A;  1HSK A;  1FIQ B;  1N5X A;  1E8G A;  5AE3 A;  2R8D A;  2PLI A;  2AXR A;  3HSU A;  1FFU C;  3PQB A;  3TX1 A;  4PVJ A;  3JS8 A;  5G5H B;  3S1D A;  3I99 A;  2E3T A;  2MBR A;  4PWC A;  2QKN A;  5D79 A;  1VAO A;  2GQT A;  2W3S A;  3D2H A;  2W54 A;  1WYG A;  3NVZ B;  3S1F A;  2Y4G A;  1MBT A;  3LAE A;  1QLT A;  4XLO A;  4MLA A;  2BVG A;  1N61 C;  3LLB A;  5HHZ A;  3D2D A;  2Q4W A;  3C0P A;  1N60 C;  3NVW B;  4BBY A;  1DII A;  1V97 A;  1JRO A;  3KJM A;  2I0K A;  2VFS A;  4PYT A;  2O3G A;  1ZR6 A;  5K8E A;  1QLU A;  1E0Y A;  3AM9 A;  1W1Q A;  5FXD A;  4JAY A;  3NS1 B;  5AE1 A;  1JRP A;  2IPI A;  1W1R A;  1WVE A;  1AHU A;  2VFV A;  5G5G B;  1W1O A;  3FW9 A;  2WDW A;  1RM6 B;  1VDV A;  2W55 A;  1W1L A;  5FXF A;  4ZOH B;  1WVF A;  2GQU A;  5L6G A;  4PVH A;  2Y3R A;  3B9J B;  2YVS A;  5I1W A;  1SB3 B;  4ML8 A;  4O95 A;  2P3H A;  5L6F A;  2BVF A;  2NQW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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