1ZR6A

The crystal structure of an acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords glucooligosaccharide oxidase
publication title Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD
pubmed doi rcsb
source organism Acremonium strictum
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1zr6A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1zr6A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 1zr6A03
3SR6B 4PWBA 3NVVB 3JS8A 2W3SA 1N62C 4DNSA 1V97A 5FXFA 1W1MA 1E8HA 3RJ8A 2YVSA 2Y3SA 1FFVC 1WYGA 3S1FA 4PVJA 3AN1A 5FXDA 5AE3A 2QPMA 5D79A 2NQWA 3NVYB 1I19A 2W3RA 3AMZA 5HMRA 3B9JB 2MBRA 3TX1A 3VTEA 5AE2A 1W1JA 1UXYA 1DIIA 3DQ0A 3S1CA 3ETRB 5I1WA 2GQUA 1F0XA 2BVFA 2P3HA 4JAYA 3TSJA 1WVFA 3TSHA 1W1LA 1DZNA 1HSKA 1N60C 4ML8A 3PQBA 2AXRA 5ADZA 5HQXA 2WDWA 4JB1A 3AM9A 4XLOA 4PVHA 1JRPA 2GQTA 3FW8A 3I99A 4BC9A 3NVWB 5AE1A 5G5GB 1E8FA 1W1RA 3FW9A 2R8DA 4PWCA 5G5HB 2VFSA 1SB3B 1MBTA 3NRZB 1QLTA 3EUB3 2BVHA 1N61C 1FFUC 3HRDC 4PVKA 3BW7A 2QKNA 2O3GA 2PLIA 4PZFA 2VFVA 2Y4GA 1E8GA 5AWVA 3KJMA 4EC3A 2Y3RA 3RJAA 2VAOA 5L6FA 1W1SA 1N5XA 3W8WA 2I0KA 1N63C 4OALA 1MBBA 2E3TA 3D2DA 2RK5A 3GSYA 1T3QC 2VFRA 3FW7A 4BC7A 1FO4A 1W1OA 2P4PA 1JROA 2PLSA 3D2JA 2Q85A 3S1EA 2EXRA 4PYTA 3POPA 4PVEA 5L6GA 4O95A 1VDVA 3C0PA 5HHZA 5I1VA 3NS1B 2BVGA 3NVZB 2OAIA 4BCAA 3PM9A 5K8EA 1ZR6A 2W55A 4BBYA 1RM6B 3W8ZA 1WVEA 4HG0A 1DIQA 4UD8A 2IPIA 1FIQB 3HSUA 2VFUA 3LLBA 2Y08A 4MLAA 5FXPA 2P13A 2R2ZA 1W1QA 3S1DA 5FXEA 1AHUA 1E0YA 2VFTA 2Q4WA 3W8XA 3DEDA 1N5WC 1AHVA 1AHZA 1QLUA 1ZXIC 2W54A 1VAOA 3LAEA 4ZOHB 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH superfamily
3SR6B 4PWBA 3NVVB 3JS8A 2W3SA 1N62C 4DNSA 1V97A 5FXFA 1W1MA 1E8HA 3RJ8A 2Y3SA 2YVSA 1FFVC 1WYGA 3S1FA 4PVJA 3AN1A 5FXDA 5AE3A 2QPMA 5D79A 2NQWA 3NVYB 1I19A 2W3RA 3AMZA 5HMRA 3B9JB 2MBRA 3TX1A 3VTEA 5AE2A 1W1JA 1UXYA 1DIIA 3DQ0A 3S1CA 3ETRB 5I1WA 2GQUA 1F0XA 2BVFA 2P3HA 4JAYA 3TSJA 1WVFA 3TSHA 1W1LA 1DZNA 1HSKA 1N60C 4ML8A 3PQBA 2AXRA 5ADZA 5HQXA 2WDWA 3EJDB 4JB1A 3AM9A 4XLOA 4PVHA 1JRPA 2GQTA 3FW8A 3I99A 4BC9A 3NVWB 5AE1A 5G5GB 1E8FA 1W1RA 3FW9A 2R8DA 4PWCA 5G5HB 2VFSA 1SB3B 1MBTA 3NRZB 1QLTA 3EUB3 2BVHA 1N61C 1FFUC 3HRDC 4PVKA 3BW7A 2QKNA 2O3GA 2PLIA 4PZFA 2VFVA 2Y4GA 1E8GA 5AWVA 3KJMA 4EC3A 2Y3RA 3RJAA 2VAOA 5L6FA 1W1SA 1N5XA 3W8WA 2I0KA 1N63C 4OALA 1MBBA 2E3TA 3D2DA 2RK5A 3GSYA 1T3QC 2VFRA 3FW7A 4BC7A 1FO4A 1W1OA 2P4PA 1JROA 2PLSA 3D2JA 2Q85A 3EJEB 3S1EA 2EXRA 4PYTA 3POPA 4PVEA 5L6GA 4O95A 1VDVA 3C0PA 5HHZA 3EJBB 5I1VA 3NS1B 2BVGA 3NVZB 2OAIA 4BCAA 3PM9A 5K8EA 1ZR6A 2W55A 2UUVA 4BBYA 1RM6B 3W8ZA 1WVEA 4HG0A 1DIQA 4UD8A 2IPIA 1FIQB 3HSUA 2VFUA 3LLBA 2Y08A 4MLAA 5FXPA 2P13A 2R2ZA 1W1QA 3S1DA 5FXEA 1AHUA 1E0YA 2VFTA 2Q4WA 3W8XA 3DEDA 1N5WC 1AHVA 1AHZA 1QLUA 1ZXIC 2UUUA 2W54A 1VAOA 3LAEA 4ZOHB 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH topology
3SR6B 4PWBA 3NVVB 3JS8A 2W3SA 1N62C 4DNSA 1V97A 5FXFA 1W1MA 1E8HA 3RJ8A 2Y3SA 2YVSA 1FFVC 1WYGA 3S1FA 4PVJA 3AN1A 5FXDA 5AE3A 2QPMA 5D79A 2NQWA 3NVYB 1I19A 2W3RA 3AMZA 5HMRA 3B9JB 2MBRA 3TX1A 3VTEA 5AE2A 1W1JA 1UXYA 1DIIA 3DQ0A 3S1CA 3ETRB 5I1WA 2GQUA 1F0XA 2BVFA 2P3HA 4JAYA 3TSJA 1WVFA 3TSHA 1W1LA 1DZNA 1HSKA 1N60C 4ML8A 3PQBA 2AXRA 5ADZA 5HQXA 2WDWA 4JB1A 3AM9A 4XLOA 4PVHA 1JRPA 2GQTA 3FW8A 3I99A 4BC9A 3NVWB 5AE1A 5G5GB 1E8FA 1W1RA 3FW9A 2R8DA 4PWCA 5G5HB 2VFSA 1SB3B 1MBTA 3NRZB 1QLTA 3EUB3 2BVHA 1N61C 1FFUC 3HRDC 4PVKA 3BW7A 2QKNA 2O3GA 2PLIA 4PZFA 2VFVA 2Y4GA 1E8GA 5AWVA 3KJMA 4EC3A 2Y3RA 3RJAA 2VAOA 5L6FA 1W1SA 1N5XA 3W8WA 2I0KA 1N63C 4OALA 1MBBA 2E3TA 3D2DA 2RK5A 3GSYA 1T3QC 2VFRA 3FW7A 4BC7A 1FO4A 1W1OA 2P4PA 1JROA 2PLSA 3D2JA 2Q85A 3S1EA 2EXRA 4PYTA 3POPA 4PVEA 5L6GA 4O95A 1VDVA 3C0PA 5HHZA 5I1VA 3NS1B 2BVGA 3NVZB 2OAIA 4BCAA 3PM9A 5K8EA 1ZR6A 2W55A 2UUVA 4BBYA 1RM6B 3W8ZA 1WVEA 4HG0A 1DIQA 4UD8A 2IPIA 1FIQB 3HSUA 2VFUA 3LLBA 2Y08A 4MLAA 5FXPA 2P13A 2R2ZA 1W1QA 3S1DA 5FXEA 1AHUA 1E0YA 2VFTA 2Q4WA 3W8XA 3DEDA 1N5WC 1AHVA 1AHZA 1QLUA 1ZXIC 2UUUA 2W54A 1VAOA 3LAEA 4ZOHB 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SR6 B;  4PWB A;  3NVV B;  3JS8 A;  2W3S A;  1N62 C;  4DNS A;  1V97 A;  5FXF A;  1W1M A;  1E8H A;  3RJ8 A;  2YVS A;  2Y3S A;  1FFV C;  1WYG A;  3S1F A;  4PVJ A;  3AN1 A;  5FXD A;  5AE3 A;  2QPM A;  5D79 A;  2NQW A;  3NVY B;  1I19 A;  2W3R A;  3AMZ A;  5HMR A;  3B9J B;  2MBR A;  3TX1 A;  3VTE A;  5AE2 A;  1W1J A;  1UXY A;  1DII A;  3DQ0 A;  3S1C A;  3ETR B;  5I1W A;  2GQU A;  1F0X A;  2BVF A;  2P3H A;  4JAY A;  3TSJ A;  1WVF A;  3TSH A;  1W1L A;  1DZN A;  1HSK A;  1N60 C;  4ML8 A;  3PQB A;  2AXR A;  5ADZ A;  5HQX A;  2WDW A;  4JB1 A;  3AM9 A;  4XLO A;  4PVH A;  1JRP A;  2GQT A;  3FW8 A;  3I99 A;  4BC9 A;  3NVW B;  5AE1 A;  5G5G B;  1E8F A;  1W1R A;  3FW9 A;  2R8D A;  4PWC A;  5G5H B;  2VFS A;  1SB3 B;  1MBT A;  3NRZ B;  1QLT A;  3EUB 3;  2BVH A;  1N61 C;  1FFU C;  3HRD C;  4PVK A;  3BW7 A;  2QKN A;  2O3G A;  2PLI A;  4PZF A;  2VFV A;  2Y4G A;  1E8G A;  5AWV A;  3KJM A;  4EC3 A;  2Y3R A;  3RJA A;  2VAO A;  5L6F A;  1W1S A;  1N5X A;  3W8W A;  2I0K A;  1N63 C;  4OAL A;  1MBB A;  2E3T A;  3D2D A;  2RK5 A;  3GSY A;  1T3Q C;  2VFR A;  3FW7 A;  4BC7 A;  1FO4 A;  1W1O A;  2P4P A;  1JRO A;  2PLS A;  3D2J A;  2Q85 A;  3S1E A;  2EXR A;  4PYT A;  3POP A;  4PVE A;  5L6G A;  4O95 A;  1VDV A;  3C0P A;  5HHZ A;  5I1V A;  3NS1 B;  2BVG A;  3NVZ B;  2OAI A;  4BCA A;  3PM9 A;  5K8E A;  1ZR6 A;  2W55 A;  4BBY A;  1RM6 B;  3W8Z A;  1WVE A;  4HG0 A;  1DIQ A;  4UD8 A;  2IPI A;  1FIQ B;  3HSU A;  2VFU A;  3LLB A;  2Y08 A;  4MLA A;  5FXP A;  2P13 A;  2R2Z A;  1W1Q A;  3S1D A;  5FXE A;  1AHU A;  1E0Y A;  2VFT A;  2Q4W A;  3W8X A;  3DED A;  1N5W C;  1AHV A;  1AHZ A;  1QLU A;  1ZXI C;  2W54 A;  1VAO A;  3LAE A;  4ZOH B;  1W1K A;  3D2H A;  3FWA A; 
#chains in the Genus database with same CATH topology
 3SR6 B;  4PWB A;  3NVV B;  3JS8 A;  2W3S A;  1N62 C;  4DNS A;  1V97 A;  5FXF A;  1W1M A;  1E8H A;  3RJ8 A;  2Y3S A;  2YVS A;  1FFV C;  1WYG A;  3S1F A;  4PVJ A;  3AN1 A;  5FXD A;  5AE3 A;  2QPM A;  5D79 A;  2NQW A;  3NVY B;  1I19 A;  2W3R A;  3AMZ A;  5HMR A;  3B9J B;  2MBR A;  3TX1 A;  3VTE A;  5AE2 A;  1W1J A;  1UXY A;  1DII A;  3DQ0 A;  3S1C A;  3ETR B;  5I1W A;  2GQU A;  1F0X A;  2BVF A;  2P3H A;  4JAY A;  3TSJ A;  1WVF A;  3TSH A;  1W1L A;  1DZN A;  1HSK A;  1N60 C;  4ML8 A;  3PQB A;  2AXR A;  5ADZ A;  5HQX A;  2WDW A;  3EJD B;  4JB1 A;  3AM9 A;  4XLO A;  4PVH A;  1JRP A;  2GQT A;  3FW8 A;  3I99 A;  4BC9 A;  3NVW B;  5AE1 A;  5G5G B;  1E8F A;  1W1R A;  3FW9 A;  2R8D A;  4PWC A;  5G5H B;  2VFS A;  1SB3 B;  1MBT A;  3NRZ B;  1QLT A;  3EUB 3;  2BVH A;  1N61 C;  1FFU C;  3HRD C;  4PVK A;  3BW7 A;  2QKN A;  2O3G A;  2PLI A;  4PZF A;  2VFV A;  2Y4G A;  1E8G A;  5AWV A;  3KJM A;  4EC3 A;  2Y3R A;  3RJA A;  2VAO A;  5L6F A;  1W1S A;  1N5X A;  3W8W A;  2I0K A;  1N63 C;  4OAL A;  1MBB A;  2E3T A;  3D2D A;  2RK5 A;  3GSY A;  1T3Q C;  2VFR A;  3FW7 A;  4BC7 A;  1FO4 A;  1W1O A;  2P4P A;  1JRO A;  2PLS A;  3D2J A;  2Q85 A;  3EJE B;  3S1E A;  2EXR A;  4PYT A;  3POP A;  4PVE A;  5L6G A;  4O95 A;  1VDV A;  3C0P A;  5HHZ A;  3EJB B;  5I1V A;  3NS1 B;  2BVG A;  3NVZ B;  2OAI A;  4BCA A;  3PM9 A;  5K8E A;  1ZR6 A;  2W55 A;  2UUV A;  4BBY A;  1RM6 B;  3W8Z A;  1WVE A;  4HG0 A;  1DIQ A;  4UD8 A;  2IPI A;  1FIQ B;  3HSU A;  2VFU A;  3LLB A;  2Y08 A;  4MLA A;  5FXP A;  2P13 A;  2R2Z A;  1W1Q A;  3S1D A;  5FXE A;  1AHU A;  1E0Y A;  2VFT A;  2Q4W A;  3W8X A;  3DED A;  1N5W C;  1AHV A;  1AHZ A;  1QLU A;  1ZXI C;  2UUU A;  2W54 A;  1VAO A;  3LAE A;  4ZOH B;  1W1K A;  3D2H A;  3FWA A; 
#chains in the Genus database with same CATH homology
 3SR6 B;  4PWB A;  3NVV B;  3JS8 A;  2W3S A;  1N62 C;  4DNS A;  1V97 A;  5FXF A;  1W1M A;  1E8H A;  3RJ8 A;  2Y3S A;  2YVS A;  1FFV C;  1WYG A;  3S1F A;  4PVJ A;  3AN1 A;  5FXD A;  5AE3 A;  2QPM A;  5D79 A;  2NQW A;  3NVY B;  1I19 A;  2W3R A;  3AMZ A;  5HMR A;  3B9J B;  2MBR A;  3TX1 A;  3VTE A;  5AE2 A;  1W1J A;  1UXY A;  1DII A;  3DQ0 A;  3S1C A;  3ETR B;  5I1W A;  2GQU A;  1F0X A;  2BVF A;  2P3H A;  4JAY A;  3TSJ A;  1WVF A;  3TSH A;  1W1L A;  1DZN A;  1HSK A;  1N60 C;  4ML8 A;  3PQB A;  2AXR A;  5ADZ A;  5HQX A;  2WDW A;  4JB1 A;  3AM9 A;  4XLO A;  4PVH A;  1JRP A;  2GQT A;  3FW8 A;  3I99 A;  4BC9 A;  3NVW B;  5AE1 A;  5G5G B;  1E8F A;  1W1R A;  3FW9 A;  2R8D A;  4PWC A;  5G5H B;  2VFS A;  1SB3 B;  1MBT A;  3NRZ B;  1QLT A;  3EUB 3;  2BVH A;  1N61 C;  1FFU C;  3HRD C;  4PVK A;  3BW7 A;  2QKN A;  2O3G A;  2PLI A;  4PZF A;  2VFV A;  2Y4G A;  1E8G A;  5AWV A;  3KJM A;  4EC3 A;  2Y3R A;  3RJA A;  2VAO A;  5L6F A;  1W1S A;  1N5X A;  3W8W A;  2I0K A;  1N63 C;  4OAL A;  1MBB A;  2E3T A;  3D2D A;  2RK5 A;  3GSY A;  1T3Q C;  2VFR A;  3FW7 A;  4BC7 A;  1FO4 A;  1W1O A;  2P4P A;  1JRO A;  2PLS A;  3D2J A;  2Q85 A;  3S1E A;  2EXR A;  4PYT A;  3POP A;  4PVE A;  5L6G A;  4O95 A;  1VDV A;  3C0P A;  5HHZ A;  5I1V A;  3NS1 B;  2BVG A;  3NVZ B;  2OAI A;  4BCA A;  3PM9 A;  5K8E A;  1ZR6 A;  2W55 A;  2UUV A;  4BBY A;  1RM6 B;  3W8Z A;  1WVE A;  4HG0 A;  1DIQ A;  4UD8 A;  2IPI A;  1FIQ B;  3HSU A;  2VFU A;  3LLB A;  2Y08 A;  4MLA A;  5FXP A;  2P13 A;  2R2Z A;  1W1Q A;  3S1D A;  5FXE A;  1AHU A;  1E0Y A;  2VFT A;  2Q4W A;  3W8X A;  3DED A;  1N5W C;  1AHV A;  1AHZ A;  1QLU A;  1ZXI C;  2UUU A;  2W54 A;  1VAO A;  3LAE A;  4ZOH B;  1W1K A;  3D2H A;  3FWA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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