1ZR6A

The crystal structure of an acremonium strictum glucooligosaccharide oxidase reveals a novel flavinylation
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
b'EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords glucooligosaccharide oxidase
publication title Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD
pubmed doi rcsb
source organism Acremonium strictum
molecule tags Oxidoreductase
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1zr6A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1zr6A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 1zr6A03
3W8ZA 1WVFA 2VFUA 1N62C 2AXRA 5FXEA 3FW7A 3NVZB 4PWCA 2NQWA 2W55A 4PVHA 1AHUA 1UXYA 2VFSA 3NVVB 4BCAA 1N60C 3VTEA 1DZNA 1W1MA 5FXPA 4BC7A 2VFVA 5L6FA 3DEDA 1FFUC 2W54A 3NS1B 3FWAA 2BVGA 1F0XA 3KJMA 5AE3A 2GQUA 4PVJA 4PVKA 2QKNA 1T3QC 1AHZA 3SR6B 4XLOA 5AWVA 2W3RA 3FW9A 1DIQA 1VDVA 1JRPA 3RJ8A 1W1QA 1ZXIC 5FXFA 4HG0A 2BVHA 5HHZA 5AE2A 4BC9A 2W3SA 3DQ0A 3AM9A 4ML8A 4OALA 5ADZA 1HSKA 2P13A 1N63C 1W1LA 1W1KA 2P3HA 5I1VA 3B9JB 1W1RA 1I19A 4PZFA 5FXDA 1N61C 2E3TA 5HMRA 2R2ZA 3POPA 2I0KA 3W8XA 2O3GA 3JS8A 5K8EA 2VFRA 2VFTA 3HRDC 2VAOA 3LLBA 3D2HA 5AE1A 2GQTA 4DNSA 3NVWB 2WDWA 1W1JA 1E0YA 2MBRA 1WYGA 4BBYA 4O95A 4MLAA 1E8HA 3ETRB 1SB3B 2PLIA 1MBTA 1DIIA 2YVSA 2Y3SA 5L6GA 3RJAA 3TSHA 2RK5A 3LAEA 3NVYB 2Y08A 1ZR6A 2R8DA 2Y4GA 5G5GB 2BVFA 4PWBA 3AMZA 3EUB3 3S1EA 3BW7A 1N5WC 1FO4A 1W1SA 1WVEA 2QPMA 4PVEA 3GSYA 1N5XA 1AHVA 3S1FA 4UD8A 5HQXA 1JROA 1E8GA 2Y3RA 4ZOHB 5I1WA 1MBBA 3PQBA 1W1OA 3D2JA 5D79A 1E8FA 3C0PA 3S1CA 3I99A 2Q85A 3PM9A 3TSJA 1RM6B 5G5HB 1FIQB 4JAYA 3AN1A 3TX1A 2PLSA 2EXRA 3NRZB 1V97A 2Q4WA 1FFVC 4JB1A 2OAIA 3FW8A 1VAOA 3HSUA 1QLUA 2P4PA 3W8WA 2IPIA 4PYTA 3D2DA 3S1DA 4EC3A 1QLTA
chains in the Genus database with same CATH superfamily
3W8ZA 1WVFA 2VFUA 1N62C 2AXRA 5FXEA 3FW7A 3NVZB 4PWCA 2NQWA 2W55A 4PVHA 1AHUA 1UXYA 2VFSA 3NVVB 4BCAA 1N60C 3VTEA 1DZNA 1W1MA 5FXPA 4BC7A 2VFVA 3EJDB 5L6FA 3DEDA 1FFUC 2W54A 3NS1B 3FWAA 2BVGA 1F0XA 3KJMA 5AE3A 2GQUA 4PVJA 4PVKA 2QKNA 1T3QC 1AHZA 3SR6B 4XLOA 5AWVA 2W3RA 3FW9A 1DIQA 1VDVA 1JRPA 3RJ8A 1W1QA 1ZXIC 5FXFA 4HG0A 2BVHA 5HHZA 5AE2A 4BC9A 2W3SA 3DQ0A 3AM9A 4ML8A 4OALA 5ADZA 1HSKA 2P13A 1N63C 1W1LA 1W1KA 2P3HA 5I1VA 3B9JB 1W1RA 1I19A 4PZFA 5FXDA 1N61C 2E3TA 5HMRA 2R2ZA 3POPA 2I0KA 3W8XA 3EJBB 2O3GA 3JS8A 5K8EA 2VFRA 2VFTA 3HRDC 2VAOA 3LLBA 3D2HA 5AE1A 2GQTA 4DNSA 3NVWB 2WDWA 1W1JA 1E0YA 2MBRA 1WYGA 4BBYA 4O95A 4MLAA 1E8HA 3ETRB 1SB3B 2PLIA 1MBTA 1DIIA 2YVSA 2Y3SA 5L6GA 2UUUA 3RJAA 3TSHA 2RK5A 3LAEA 3NVYB 2Y08A 1ZR6A 2R8DA 2Y4GA 5G5GB 3EJEB 2BVFA 4PWBA 3AMZA 3EUB3 3S1EA 3BW7A 1N5WC 1FO4A 1W1SA 1WVEA 2QPMA 4PVEA 3GSYA 1N5XA 1AHVA 3S1FA 4UD8A 5HQXA 1JROA 1E8GA 2Y3RA 4ZOHB 5I1WA 2UUVA 1MBBA 3PQBA 1W1OA 3D2JA 5D79A 1E8FA 3C0PA 3S1CA 3I99A 2Q85A 3PM9A 3TSJA 1RM6B 5G5HB 1FIQB 4JAYA 3AN1A 3TX1A 2PLSA 2EXRA 3NRZB 1V97A 2Q4WA 1FFVC 4JB1A 2OAIA 3FW8A 1VAOA 3HSUA 1QLUA 2P4PA 3W8WA 2IPIA 4PYTA 3D2DA 3S1DA 4EC3A 1QLTA
chains in the Genus database with same CATH topology
3W8ZA 1WVFA 2VFUA 1N62C 2AXRA 5FXEA 3FW7A 3NVZB 4PWCA 2NQWA 2W55A 4PVHA 1AHUA 1UXYA 2VFSA 3NVVB 4BCAA 1N60C 3VTEA 1DZNA 1W1MA 5FXPA 4BC7A 2VFVA 5L6FA 3DEDA 1FFUC 2W54A 3NS1B 3FWAA 2BVGA 1F0XA 3KJMA 5AE3A 2GQUA 4PVJA 4PVKA 2QKNA 1T3QC 1AHZA 3SR6B 4XLOA 5AWVA 2W3RA 3FW9A 1DIQA 1VDVA 1JRPA 3RJ8A 1W1QA 1ZXIC 5FXFA 4HG0A 2BVHA 5HHZA 5AE2A 4BC9A 2W3SA 3DQ0A 3AM9A 4ML8A 4OALA 5ADZA 1HSKA 2P13A 1N63C 1W1LA 1W1KA 2P3HA 5I1VA 3B9JB 1W1RA 1I19A 4PZFA 5FXDA 1N61C 2E3TA 5HMRA 2R2ZA 3POPA 2I0KA 3W8XA 2O3GA 3JS8A 5K8EA 2VFRA 2VFTA 3HRDC 2VAOA 3LLBA 3D2HA 5AE1A 2GQTA 4DNSA 2WDWA 3NVWB 1W1JA 1E0YA 2MBRA 1WYGA 4BBYA 4O95A 4MLAA 1E8HA 3ETRB 1SB3B 2PLIA 1MBTA 1DIIA 2YVSA 2Y3SA 5L6GA 2UUUA 3RJAA 3TSHA 2RK5A 3LAEA 2Y08A 3NVYB 1ZR6A 2R8DA 2Y4GA 5G5GB 2BVFA 4PWBA 3AMZA 3EUB3 3S1EA 3BW7A 1N5WC 1FO4A 1W1SA 1WVEA 2QPMA 4PVEA 3GSYA 1N5XA 1AHVA 3S1FA 4UD8A 5HQXA 1JROA 1E8GA 2Y3RA 4ZOHB 5I1WA 2UUVA 1MBBA 3PQBA 1W1OA 3D2JA 5D79A 1E8FA 3C0PA 3S1CA 3I99A 2Q85A 3PM9A 3TSJA 1RM6B 5G5HB 1FIQB 4JAYA 3AN1A 3TX1A 2PLSA 2EXRA 3NRZB 1V97A 2Q4WA 1FFVC 4JB1A 2OAIA 3FW8A 1VAOA 3HSUA 1QLUA 2P4PA 3W8WA 2IPIA 4PYTA 3D2DA 3S1DA 4EC3A 1QLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8Z A;  1WVF A;  2VFU A;  1N62 C;  2AXR A;  5FXE A;  3FW7 A;  3NVZ B;  4PWC A;  2NQW A;  2W55 A;  4PVH A;  1AHU A;  1UXY A;  2VFS A;  3NVV B;  4BCA A;  1N60 C;  3VTE A;  1DZN A;  1W1M A;  5FXP A;  4BC7 A;  2VFV A;  5L6F A;  3DED A;  1FFU C;  2W54 A;  3NS1 B;  3FWA A;  2BVG A;  1F0X A;  3KJM A;  5AE3 A;  2GQU A;  4PVJ A;  4PVK A;  2QKN A;  1T3Q C;  1AHZ A;  3SR6 B;  4XLO A;  5AWV A;  2W3R A;  3FW9 A;  1DIQ A;  1VDV A;  1JRP A;  3RJ8 A;  1W1Q A;  1ZXI C;  5FXF A;  4HG0 A;  2BVH A;  5HHZ A;  5AE2 A;  4BC9 A;  2W3S A;  3DQ0 A;  3AM9 A;  4ML8 A;  4OAL A;  5ADZ A;  1HSK A;  2P13 A;  1N63 C;  1W1L A;  1W1K A;  2P3H A;  5I1V A;  3B9J B;  1W1R A;  1I19 A;  4PZF A;  5FXD A;  1N61 C;  2E3T A;  5HMR A;  2R2Z A;  3POP A;  2I0K A;  3W8X A;  2O3G A;  3JS8 A;  5K8E A;  2VFR A;  2VFT A;  3HRD C;  2VAO A;  3LLB A;  3D2H A;  5AE1 A;  2GQT A;  4DNS A;  3NVW B;  2WDW A;  1W1J A;  1E0Y A;  2MBR A;  1WYG A;  4BBY A;  4O95 A;  4MLA A;  1E8H A;  3ETR B;  1SB3 B;  2PLI A;  1MBT A;  1DII A;  2YVS A;  2Y3S A;  5L6G A;  3RJA A;  3TSH A;  2RK5 A;  3LAE A;  3NVY B;  2Y08 A;  1ZR6 A;  2R8D A;  2Y4G A;  5G5G B;  2BVF A;  4PWB A;  3AMZ A;  3EUB 3;  3S1E A;  3BW7 A;  1N5W C;  1FO4 A;  1W1S A;  1WVE A;  2QPM A;  4PVE A;  3GSY A;  1N5X A;  1AHV A;  3S1F A;  4UD8 A;  5HQX A;  1JRO A;  1E8G A;  2Y3R A;  4ZOH B;  5I1W A;  1MBB A;  3PQB A;  1W1O A;  3D2J A;  5D79 A;  1E8F A;  3C0P A;  3S1C A;  3I99 A;  2Q85 A;  3PM9 A;  3TSJ A;  1RM6 B;  5G5H B;  1FIQ B;  4JAY A;  3AN1 A;  3TX1 A;  2PLS A;  2EXR A;  3NRZ B;  1V97 A;  2Q4W A;  1FFV C;  4JB1 A;  2OAI A;  3FW8 A;  1VAO A;  3HSU A;  1QLU A;  2P4P A;  3W8W A;  2IPI A;  4PYT A;  3D2D A;  3S1D A;  4EC3 A;  1QLT A; 
#chains in the Genus database with same CATH topology
 3W8Z A;  1WVF A;  2VFU A;  1N62 C;  2AXR A;  5FXE A;  3FW7 A;  3NVZ B;  4PWC A;  2NQW A;  2W55 A;  4PVH A;  1AHU A;  1UXY A;  2VFS A;  3NVV B;  4BCA A;  1N60 C;  3VTE A;  1DZN A;  1W1M A;  5FXP A;  4BC7 A;  2VFV A;  3EJD B;  5L6F A;  3DED A;  1FFU C;  2W54 A;  3NS1 B;  3FWA A;  2BVG A;  1F0X A;  3KJM A;  5AE3 A;  2GQU A;  4PVJ A;  4PVK A;  2QKN A;  1T3Q C;  1AHZ A;  3SR6 B;  4XLO A;  5AWV A;  2W3R A;  3FW9 A;  1DIQ A;  1VDV A;  1JRP A;  3RJ8 A;  1W1Q A;  1ZXI C;  5FXF A;  4HG0 A;  2BVH A;  5HHZ A;  5AE2 A;  4BC9 A;  2W3S A;  3DQ0 A;  3AM9 A;  4ML8 A;  4OAL A;  5ADZ A;  1HSK A;  2P13 A;  1N63 C;  1W1L A;  1W1K A;  2P3H A;  5I1V A;  3B9J B;  1W1R A;  1I19 A;  4PZF A;  5FXD A;  1N61 C;  2E3T A;  5HMR A;  2R2Z A;  3POP A;  2I0K A;  3W8X A;  3EJB B;  2O3G A;  3JS8 A;  5K8E A;  2VFR A;  2VFT A;  3HRD C;  2VAO A;  3LLB A;  3D2H A;  5AE1 A;  2GQT A;  4DNS A;  3NVW B;  2WDW A;  1W1J A;  1E0Y A;  2MBR A;  1WYG A;  4BBY A;  4O95 A;  4MLA A;  1E8H A;  3ETR B;  1SB3 B;  2PLI A;  1MBT A;  1DII A;  2YVS A;  2Y3S A;  5L6G A;  2UUU A;  3RJA A;  3TSH A;  2RK5 A;  3LAE A;  3NVY B;  2Y08 A;  1ZR6 A;  2R8D A;  2Y4G A;  5G5G B;  3EJE B;  2BVF A;  4PWB A;  3AMZ A;  3EUB 3;  3S1E A;  3BW7 A;  1N5W C;  1FO4 A;  1W1S A;  1WVE A;  2QPM A;  4PVE A;  3GSY A;  1N5X A;  1AHV A;  3S1F A;  4UD8 A;  5HQX A;  1JRO A;  1E8G A;  2Y3R A;  4ZOH B;  5I1W A;  2UUV A;  1MBB A;  3PQB A;  1W1O A;  3D2J A;  5D79 A;  1E8F A;  3C0P A;  3S1C A;  3I99 A;  2Q85 A;  3PM9 A;  3TSJ A;  1RM6 B;  5G5H B;  1FIQ B;  4JAY A;  3AN1 A;  3TX1 A;  2PLS A;  2EXR A;  3NRZ B;  1V97 A;  2Q4W A;  1FFV C;  4JB1 A;  2OAI A;  3FW8 A;  1VAO A;  3HSU A;  1QLU A;  2P4P A;  3W8W A;  2IPI A;  4PYT A;  3D2D A;  3S1D A;  4EC3 A;  1QLT A; 
#chains in the Genus database with same CATH homology
 3W8Z A;  1WVF A;  2VFU A;  1N62 C;  2AXR A;  5FXE A;  3FW7 A;  3NVZ B;  4PWC A;  2NQW A;  2W55 A;  4PVH A;  1AHU A;  1UXY A;  2VFS A;  3NVV B;  4BCA A;  1N60 C;  3VTE A;  1DZN A;  1W1M A;  5FXP A;  4BC7 A;  2VFV A;  5L6F A;  3DED A;  1FFU C;  2W54 A;  3NS1 B;  3FWA A;  2BVG A;  1F0X A;  3KJM A;  5AE3 A;  2GQU A;  4PVJ A;  4PVK A;  2QKN A;  1T3Q C;  1AHZ A;  3SR6 B;  4XLO A;  5AWV A;  2W3R A;  3FW9 A;  1DIQ A;  1VDV A;  1JRP A;  3RJ8 A;  1W1Q A;  1ZXI C;  5FXF A;  4HG0 A;  2BVH A;  5HHZ A;  5AE2 A;  4BC9 A;  2W3S A;  3DQ0 A;  3AM9 A;  4ML8 A;  4OAL A;  5ADZ A;  1HSK A;  2P13 A;  1N63 C;  1W1L A;  1W1K A;  2P3H A;  5I1V A;  3B9J B;  1W1R A;  1I19 A;  4PZF A;  5FXD A;  1N61 C;  2E3T A;  5HMR A;  2R2Z A;  3POP A;  2I0K A;  3W8X A;  2O3G A;  3JS8 A;  5K8E A;  2VFR A;  2VFT A;  3HRD C;  2VAO A;  3LLB A;  3D2H A;  5AE1 A;  2GQT A;  4DNS A;  2WDW A;  3NVW B;  1W1J A;  1E0Y A;  2MBR A;  1WYG A;  4BBY A;  4O95 A;  4MLA A;  1E8H A;  3ETR B;  1SB3 B;  2PLI A;  1MBT A;  1DII A;  2YVS A;  2Y3S A;  5L6G A;  2UUU A;  3RJA A;  3TSH A;  2RK5 A;  3LAE A;  2Y08 A;  3NVY B;  1ZR6 A;  2R8D A;  2Y4G A;  5G5G B;  2BVF A;  4PWB A;  3AMZ A;  3EUB 3;  3S1E A;  3BW7 A;  1N5W C;  1FO4 A;  1W1S A;  1WVE A;  2QPM A;  4PVE A;  3GSY A;  1N5X A;  1AHV A;  3S1F A;  4UD8 A;  5HQX A;  1JRO A;  1E8G A;  2Y3R A;  4ZOH B;  5I1W A;  2UUV A;  1MBB A;  3PQB A;  1W1O A;  3D2J A;  5D79 A;  1E8F A;  3C0P A;  3S1C A;  3I99 A;  2Q85 A;  3PM9 A;  3TSJ A;  1RM6 B;  5G5H B;  1FIQ B;  4JAY A;  3AN1 A;  3TX1 A;  2PLS A;  2EXR A;  3NRZ B;  1V97 A;  2Q4W A;  1FFV C;  4JB1 A;  2OAI A;  3FW8 A;  1VAO A;  3HSU A;  1QLU A;  2P4P A;  3W8W A;  2IPI A;  4PYT A;  3D2D A;  3S1D A;  4EC3 A;  1QLT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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