3TX1A

X-ray crystal structure of listeria monocytogenes egd-e udp-n-acetylenolpyruvylglucosamine reductase (murb)
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
298
structure length
295
Chain Sequence
MNNLQTKFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKLKRSELKYRSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQQTVREKFDVELETEVKIIGEDK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystal structure of Listeria monocytogenes EGD-e UDP-N-acetylenolpyruvylglucosamine reductase (MurB).
rcsb
molecule tags Oxidoreductase
source organism Listeria monocytogenes
molecule keywords UDP-N-acetylenolpyruvoylglucosamine reductase
total genus 82
structure length 295
sequence length 298
ec nomenclature ec 1.3.1.98: UDP-N-acetylmuramate dehydrogenase.
pdb deposition date 2011-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3tx1A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3tx1A02
3.90.78.10 Alpha Beta Alpha-Beta Complex Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 3tx1A03
5FXPA 2O3GA 2Q85A 1F0XA 1V97A 4XLOA 5FXDA 3HRDC 2I0KA 4JAYA 2E3TA 2P13A 3BW7A 5ADZA 3TX1A 1W1KA 2PLSA 1ZXIC 4BCAA 2YVSA 2OAIA 3AM9A 3D2HA 5HMRA 2VFVA 1W1JA 3W8WA 2AXRA 2PLIA 3VTEA 1E8GA 3S1FA 2W55A 4JB1A 5G5GB 1W1OA 3NS1B 5G5HB 4ML8A 2BVFA 1I19A 1VDVA 2GQUA 3KJMA 2VFUA 2BVHA 1FFUC 1FIQB 1T3QC 5HQXA 1WVEA 5HHZA 2W3SA 3PM9A 1N63C 1W1SA 4PVKA 1FFVC 1AHVA 4OALA 3W8ZA 4ZOHB 1E8FA 1N62C 3DQ0A 4PWBA 4PVEA 1DZNA 3NRZB 3LLBA 2R2ZA 2VFTA 2W54A 3JS8A 3S1DA 1SB3B 2W3RA 2P3HA 4MLAA 1RM6B 1E0YA 4PWCA 3SR6B 2VFSA 1JRPA 3W8XA 4UD8A 1W1LA 3AMZA 3C0PA 1N61C 5FXFA 2R8DA 1WYGA 3DEDA 3S1EA 2QPMA 5AE2A 3D2DA 4PVJA 1FO4A 4BC7A 4EC3A 4HG0A 2P4PA 3NVVB 1W1MA 4PYTA 3NVWB 4PZFA 5AE3A 4BBYA 3FWAA 1DIIA 3FW7A 3D2JA 4DNSA 2GQTA 3I99A 1AHZA 2RK5A 2BVGA 1HSKA 1DIQA 1QLUA 1QLTA 3TSJA 2QKNA 2VAOA 3NVYB 1VAOA 3S1CA 2Q4WA 1AHUA 1E8HA 3ETRB 1WVFA 5AE1A 1MBBA 3AN1A 3EUB3 4PVHA 3FW8A 1N60C 3TSHA 4O95A 1N5WC 5FXEA 1JROA 1MBTA 1W1RA 2EXRA 3B9JB 2NQWA 3GSYA 3FW9A 5D79A 4BC9A 1ZR6A 2MBRA 2VFRA 3NVZB 1W1QA 1UXYA 3LAEA 1N5XA
chains in the Genus database with same CATH superfamily
2Y3SA 5L6FA 5FXPA 2O3GA 2Q85A 1F0XA 1V97A 3POPA 4XLOA 5FXDA 3HRDC 2I0KA 4JAYA 2E3TA 2P13A 3BW7A 5ADZA 3TX1A 2Y3RA 1W1KA 2PLSA 1ZXIC 4BCAA 2YVSA 5I1WA 2OAIA 3EJDB 3AM9A 3D2HA 5L6GA 5HMRA 2VFVA 3PQBA 1W1JA 3W8WA 2AXRA 2PLIA 3VTEA 1E8GA 3S1FA 2W55A 4JB1A 5G5GB 2IPIA 1W1OA 3NS1B 5G5HB 4ML8A 2BVFA 1I19A 1VDVA 2GQUA 3KJMA 2VFUA 2BVHA 1FFUC 1FIQB 3EJBB 1T3QC 5HQXA 1WVEA 5HHZA 2W3SA 3PM9A 1N63C 1W1SA 3HSUA 4PVKA 1FFVC 5K8EA 1AHVA 4OALA 3W8ZA 4ZOHB 1E8FA 2Y08A 1N62C 3DQ0A 4PWBA 4PVEA 1DZNA 3NRZB 3LLBA 2R2ZA 2VFTA 2W54A 3JS8A 3S1DA 1SB3B 2UUVA 2W3RA 2P3HA 4MLAA 1RM6B 1E0YA 4PWCA 3RJAA 2UUUA 3SR6B 2VFSA 1JRPA 3W8XA 4UD8A 1W1LA 3AMZA 3C0PA 1N61C 5FXFA 2R8DA 1WYGA 3DEDA 3S1EA 2QPMA 5AE2A 3D2DA 4PVJA 1FO4A 4BC7A 4EC3A 4HG0A 2P4PA 5AWVA 3NVVB 1W1MA 3EJEB 4PYTA 3NVWB 2WDWA 4PZFA 5AE3A 4BBYA 3FWAA 1DIIA 3FW7A 3D2JA 4DNSA 2GQTA 3I99A 1AHZA 2RK5A 2BVGA 1HSKA 1DIQA 1QLUA 1QLTA 3TSJA 2QKNA 2Y4GA 2VAOA 3NVYB 1VAOA 3S1CA 2Q4WA 1AHUA 1E8HA 3ETRB 1WVFA 5AE1A 5I1VA 1MBBA 3AN1A 3EUB3 4PVHA 3FW8A 1N60C 3TSHA 4O95A 1N5WC 5FXEA 1JROA 1MBTA 1W1RA 2EXRA 3B9JB 2NQWA 3GSYA 3FW9A 5D79A 4BC9A 1ZR6A 2MBRA 2VFRA 3NVZB 1W1QA 1UXYA 3RJ8A 3LAEA 1N5XA
chains in the Genus database with same CATH topology
2Y3SA 5L6FA 5FXPA 2O3GA 2Q85A 1F0XA 1V97A 3POPA 4XLOA 5FXDA 3HRDC 2I0KA 4JAYA 2E3TA 2P13A 3BW7A 5ADZA 3TX1A 2Y3RA 1W1KA 2PLSA 1ZXIC 4BCAA 2YVSA 5I1WA 2OAIA 3AM9A 3D2HA 5L6GA 5HMRA 2VFVA 3PQBA 1W1JA 3W8WA 2AXRA 2PLIA 3VTEA 1E8GA 3S1FA 2W55A 4JB1A 5G5GB 2IPIA 1W1OA 3NS1B 5G5HB 4ML8A 2BVFA 1I19A 1VDVA 2GQUA 3KJMA 2VFUA 2BVHA 1FFUC 1FIQB 1T3QC 5HQXA 1WVEA 5HHZA 2W3SA 3PM9A 1N63C 1W1SA 3HSUA 4PVKA 1FFVC 5K8EA 1AHVA 4OALA 3W8ZA 4ZOHB 1E8FA 2Y08A 1N62C 3DQ0A 4PWBA 4PVEA 1DZNA 3NRZB 3LLBA 2R2ZA 2VFTA 2W54A 3JS8A 3S1DA 1SB3B 2UUVA 2W3RA 2P3HA 4MLAA 1RM6B 1E0YA 4PWCA 3RJAA 2UUUA 3SR6B 2VFSA 1JRPA 3W8XA 4UD8A 1W1LA 3AMZA 3C0PA 1N61C 5FXFA 2R8DA 1WYGA 3DEDA 3S1EA 2QPMA 5AE2A 3D2DA 4PVJA 1FO4A 4BC7A 4EC3A 4HG0A 2P4PA 5AWVA 3NVVB 1W1MA 4PYTA 3NVWB 2WDWA 4PZFA 5AE3A 4BBYA 3FWAA 1DIIA 3FW7A 3D2JA 4DNSA 2GQTA 3I99A 1AHZA 2RK5A 2BVGA 1HSKA 1DIQA 1QLUA 1QLTA 3TSJA 2QKNA 2Y4GA 2VAOA 3NVYB 1VAOA 3S1CA 2Q4WA 1AHUA 1E8HA 3ETRB 1WVFA 5AE1A 5I1VA 1MBBA 3AN1A 3EUB3 4PVHA 3FW8A 1N60C 3TSHA 4O95A 1N5WC 5FXEA 1JROA 1MBTA 1W1RA 2EXRA 3B9JB 2NQWA 3GSYA 3FW9A 5D79A 4BC9A 1ZR6A 2MBRA 2VFRA 3NVZB 1W1QA 1UXYA 3RJ8A 3LAEA 1N5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FXP A;  2O3G A;  2Q85 A;  1F0X A;  1V97 A;  4XLO A;  5FXD A;  3HRD C;  2I0K A;  4JAY A;  2E3T A;  2P13 A;  3BW7 A;  5ADZ A;  3TX1 A;  1W1K A;  2PLS A;  1ZXI C;  4BCA A;  2YVS A;  2OAI A;  3AM9 A;  3D2H A;  5HMR A;  2VFV A;  1W1J A;  3W8W A;  2AXR A;  2PLI A;  3VTE A;  1E8G A;  3S1F A;  2W55 A;  4JB1 A;  5G5G B;  1W1O A;  3NS1 B;  5G5H B;  4ML8 A;  2BVF A;  1I19 A;  1VDV A;  2GQU A;  3KJM A;  2VFU A;  2BVH A;  1FFU C;  1FIQ B;  1T3Q C;  5HQX A;  1WVE A;  5HHZ A;  2W3S A;  3PM9 A;  1N63 C;  1W1S A;  4PVK A;  1FFV C;  1AHV A;  4OAL A;  3W8Z A;  4ZOH B;  1E8F A;  1N62 C;  3DQ0 A;  4PWB A;  4PVE A;  1DZN A;  3NRZ B;  3LLB A;  2R2Z A;  2VFT A;  2W54 A;  3JS8 A;  3S1D A;  1SB3 B;  2W3R A;  2P3H A;  4MLA A;  1RM6 B;  1E0Y A;  4PWC A;  3SR6 B;  2VFS A;  1JRP A;  3W8X A;  4UD8 A;  1W1L A;  3AMZ A;  3C0P A;  1N61 C;  5FXF A;  2R8D A;  1WYG A;  3DED A;  3S1E A;  2QPM A;  5AE2 A;  3D2D A;  4PVJ A;  1FO4 A;  4BC7 A;  4EC3 A;  4HG0 A;  2P4P A;  3NVV B;  1W1M A;  4PYT A;  3NVW B;  4PZF A;  5AE3 A;  4BBY A;  3FWA A;  1DII A;  3FW7 A;  3D2J A;  4DNS A;  2GQT A;  3I99 A;  1AHZ A;  2RK5 A;  2BVG A;  1HSK A;  1DIQ A;  1QLU A;  1QLT A;  3TSJ A;  2QKN A;  2VAO A;  3NVY B;  1VAO A;  3S1C A;  2Q4W A;  1AHU A;  1E8H A;  3ETR B;  1WVF A;  5AE1 A;  1MBB A;  3AN1 A;  3EUB 3;  4PVH A;  3FW8 A;  1N60 C;  3TSH A;  4O95 A;  1N5W C;  5FXE A;  1JRO A;  1MBT A;  1W1R A;  2EXR A;  3B9J B;  2NQW A;  3GSY A;  3FW9 A;  5D79 A;  4BC9 A;  1ZR6 A;  2MBR A;  2VFR A;  3NVZ B;  1W1Q A;  1UXY A;  3LAE A;  1N5X A; 
#chains in the Genus database with same CATH topology
 2Y3S A;  5L6F A;  5FXP A;  2O3G A;  2Q85 A;  1F0X A;  1V97 A;  3POP A;  4XLO A;  5FXD A;  3HRD C;  2I0K A;  4JAY A;  2E3T A;  2P13 A;  3BW7 A;  5ADZ A;  3TX1 A;  2Y3R A;  1W1K A;  2PLS A;  1ZXI C;  4BCA A;  2YVS A;  5I1W A;  2OAI A;  3EJD B;  3AM9 A;  3D2H A;  5L6G A;  5HMR A;  2VFV A;  3PQB A;  1W1J A;  3W8W A;  2AXR A;  2PLI A;  3VTE A;  1E8G A;  3S1F A;  2W55 A;  4JB1 A;  5G5G B;  2IPI A;  1W1O A;  3NS1 B;  5G5H B;  4ML8 A;  2BVF A;  1I19 A;  1VDV A;  2GQU A;  3KJM A;  2VFU A;  2BVH A;  1FFU C;  1FIQ B;  3EJB B;  1T3Q C;  5HQX A;  1WVE A;  5HHZ A;  2W3S A;  3PM9 A;  1N63 C;  1W1S A;  3HSU A;  4PVK A;  1FFV C;  5K8E A;  1AHV A;  4OAL A;  3W8Z A;  4ZOH B;  1E8F A;  2Y08 A;  1N62 C;  3DQ0 A;  4PWB A;  4PVE A;  1DZN A;  3NRZ B;  3LLB A;  2R2Z A;  2VFT A;  2W54 A;  3JS8 A;  3S1D A;  1SB3 B;  2UUV A;  2W3R A;  2P3H A;  4MLA A;  1RM6 B;  1E0Y A;  4PWC A;  3RJA A;  2UUU A;  3SR6 B;  2VFS A;  1JRP A;  3W8X A;  4UD8 A;  1W1L A;  3AMZ A;  3C0P A;  1N61 C;  5FXF A;  2R8D A;  1WYG A;  3DED A;  3S1E A;  2QPM A;  5AE2 A;  3D2D A;  4PVJ A;  1FO4 A;  4BC7 A;  4EC3 A;  4HG0 A;  2P4P A;  5AWV A;  3NVV B;  1W1M A;  3EJE B;  4PYT A;  3NVW B;  2WDW A;  4PZF A;  5AE3 A;  4BBY A;  3FWA A;  1DII A;  3FW7 A;  3D2J A;  4DNS A;  2GQT A;  3I99 A;  1AHZ A;  2RK5 A;  2BVG A;  1HSK A;  1DIQ A;  1QLU A;  1QLT A;  3TSJ A;  2QKN A;  2Y4G A;  2VAO A;  3NVY B;  1VAO A;  3S1C A;  2Q4W A;  1AHU A;  1E8H A;  3ETR B;  1WVF A;  5AE1 A;  5I1V A;  1MBB A;  3AN1 A;  3EUB 3;  4PVH A;  3FW8 A;  1N60 C;  3TSH A;  4O95 A;  1N5W C;  5FXE A;  1JRO A;  1MBT A;  1W1R A;  2EXR A;  3B9J B;  2NQW A;  3GSY A;  3FW9 A;  5D79 A;  4BC9 A;  1ZR6 A;  2MBR A;  2VFR A;  3NVZ B;  1W1Q A;  1UXY A;  3RJ8 A;  3LAE A;  1N5X A; 
#chains in the Genus database with same CATH homology
 2Y3S A;  5L6F A;  5FXP A;  2O3G A;  2Q85 A;  1F0X A;  1V97 A;  3POP A;  4XLO A;  5FXD A;  3HRD C;  2I0K A;  4JAY A;  2E3T A;  2P13 A;  3BW7 A;  5ADZ A;  3TX1 A;  2Y3R A;  1W1K A;  2PLS A;  1ZXI C;  4BCA A;  2YVS A;  5I1W A;  2OAI A;  3AM9 A;  3D2H A;  5L6G A;  5HMR A;  2VFV A;  3PQB A;  1W1J A;  3W8W A;  2AXR A;  2PLI A;  3VTE A;  1E8G A;  3S1F A;  2W55 A;  4JB1 A;  5G5G B;  2IPI A;  1W1O A;  3NS1 B;  5G5H B;  4ML8 A;  2BVF A;  1I19 A;  1VDV A;  2GQU A;  3KJM A;  2VFU A;  2BVH A;  1FFU C;  1FIQ B;  1T3Q C;  5HQX A;  1WVE A;  5HHZ A;  2W3S A;  3PM9 A;  1N63 C;  1W1S A;  3HSU A;  4PVK A;  1FFV C;  5K8E A;  1AHV A;  4OAL A;  3W8Z A;  4ZOH B;  1E8F A;  2Y08 A;  1N62 C;  3DQ0 A;  4PWB A;  4PVE A;  1DZN A;  3NRZ B;  3LLB A;  2R2Z A;  2VFT A;  2W54 A;  3JS8 A;  3S1D A;  1SB3 B;  2UUV A;  2W3R A;  2P3H A;  4MLA A;  1RM6 B;  1E0Y A;  4PWC A;  3RJA A;  2UUU A;  3SR6 B;  2VFS A;  1JRP A;  3W8X A;  4UD8 A;  1W1L A;  3AMZ A;  3C0P A;  1N61 C;  5FXF A;  2R8D A;  1WYG A;  3DED A;  3S1E A;  2QPM A;  5AE2 A;  3D2D A;  4PVJ A;  1FO4 A;  4BC7 A;  4EC3 A;  4HG0 A;  2P4P A;  5AWV A;  3NVV B;  1W1M A;  4PYT A;  3NVW B;  2WDW A;  4PZF A;  5AE3 A;  4BBY A;  3FWA A;  1DII A;  3FW7 A;  3D2J A;  4DNS A;  2GQT A;  3I99 A;  1AHZ A;  2RK5 A;  2BVG A;  1HSK A;  1DIQ A;  1QLU A;  1QLT A;  3TSJ A;  2QKN A;  2Y4G A;  2VAO A;  3NVY B;  1VAO A;  3S1C A;  2Q4W A;  1AHU A;  1E8H A;  3ETR B;  1WVF A;  5AE1 A;  5I1V A;  1MBB A;  3AN1 A;  3EUB 3;  4PVH A;  3FW8 A;  1N60 C;  3TSH A;  4O95 A;  1N5W C;  5FXE A;  1JRO A;  1MBT A;  1W1R A;  2EXR A;  3B9J B;  2NQW A;  3GSY A;  3FW9 A;  5D79 A;  4BC9 A;  1ZR6 A;  2MBR A;  2VFR A;  3NVZ B;  1W1Q A;  1UXY A;  3RJ8 A;  3LAE A;  1N5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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