3TX1A

X-ray crystal structure of listeria monocytogenes egd-e udp-n-acetylenolpyruvylglucosamine reductase (murb)
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
298
structure length
295
Chain Sequence
MNNLQTKFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKLKRSELKYRSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQQTVREKFDVELETEVKIIGEDK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords UDP-N-acetylenolpyruvoylglucosamine reductase
publication title X-ray crystal structure of Listeria monocytogenes EGD-e UDP-N-acetylenolpyruvylglucosamine reductase (MurB).
rcsb
source organism Listeria monocytogenes
total genus 82
structure length 295
sequence length 298
ec nomenclature ec 1.3.1.98: UDP-N-acetylmuramate dehydrogenase.
pdb deposition date 2011-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3tx1A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3tx1A02
3.90.78.10 Alpha Beta Alpha-Beta Complex Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 3tx1A03
5HHZA 2GQTA 2VFSA 4O95A 2PLSA 2R2ZA 1FIQB 5D79A 4DNSA 1F0XA 1E0YA 3NRZB 3TX1A 1ZR6A 1N5XA 2P3HA 3D2DA 3HRDC 5G5GB 2VFVA 2E3TA 1DIIA 3KJMA 4JAYA 3I99A 1WVEA 4PVKA 5AE2A 1WVFA 3NVZB 3NVWB 3ETRB 2P4PA 1E8GA 2PLIA 1WYGA 2BVHA 2I0KA 3TSJA 5FXEA 3LAEA 5ADZA 2Q4WA 1AHZA 4PVHA 4PWCA 1ZXIC 1HSKA 1JROA 5FXFA 2OAIA 3AN1A 3GSYA 5FXPA 3VTEA 1W1LA 1N61C 4ZOHB 1N63C 3C0PA 3DQ0A 3W8WA 4JB1A 1AHUA 3FW8A 4ML8A 1QLTA 1W1QA 4PVJA 1SB3B 1E8FA 1QLUA 4EC3A 4PYTA 4UD8A 3DEDA 1N5WC 4BCAA 3FWAA 3SR6B 4PZFA 5AE3A 2Q85A 3FW7A 1T3QC 1FO4A 1W1JA 4PVEA 1VAOA 3BW7A 4BBYA 2W55A 2BVGA 2VFUA 3W8XA 1RM6B 2BVFA 4BC9A 4XLOA 3S1DA 1N60C 1E8HA 2VFRA 1FFUC 4MLAA 2EXRA 1W1SA 2VAOA 3JS8A 2GQUA 1W1KA 3TSHA 2RK5A 1I19A 3D2HA 2YVSA 1FFVC 1JRPA 3D2JA 3S1CA 1DIQA 2P13A 3B9JB 2O3GA 3EUB3 3AM9A 4BC7A 4PWBA 3LLBA 1N62C 2QKNA 5G5HB 4HG0A 3S1EA 1V97A 3NVYB 2W3SA 1DZNA 1VDVA 3NVVB 1AHVA 2W3RA 5HQXA 2NQWA 2R8DA 1W1RA 3AMZA 4OALA 3NS1B 2W54A 1W1OA 2QPMA 3W8ZA 1UXYA 2MBRA 1W1MA 2VFTA 3FW9A 5FXDA 5AE1A 1MBBA 1MBTA 5HMRA 2AXRA 3PM9A 3S1FA
chains in the Genus database with same CATH superfamily
5HHZA 2GQTA 2VFSA 4O95A 2PLSA 2R2ZA 1FIQB 3EJBB 5D79A 4DNSA 1F0XA 2Y3RA 1E0YA 3NRZB 3TX1A 2Y08A 1ZR6A 1N5XA 2P3HA 3D2DA 3HRDC 5AWVA 2VFVA 2E3TA 5G5GB 1DIIA 2UUVA 3KJMA 4JAYA 3I99A 1WVEA 4PVKA 5AE2A 1WVFA 3NVZB 3NVWB 3ETRB 2P4PA 1E8GA 2PLIA 2UUUA 1WYGA 2BVHA 2I0KA 5I1VA 3TSJA 5FXEA 2IPIA 3LAEA 5ADZA 2Q4WA 1AHZA 4PVHA 4PWCA 5L6GA 1ZXIC 5I1WA 1HSKA 3EJEB 1JROA 5FXFA 2OAIA 3AN1A 3GSYA 5FXPA 3VTEA 1W1LA 1N61C 4ZOHB 1N63C 3C0PA 3DQ0A 3W8WA 4JB1A 1AHUA 3FW8A 4ML8A 3PQBA 1QLTA 1W1QA 4PVJA 1SB3B 1E8FA 1QLUA 4EC3A 4PYTA 4UD8A 3DEDA 1N5WC 4BCAA 3FWAA 3SR6B 4PZFA 5AE3A 2Q85A 3FW7A 1T3QC 1FO4A 1W1JA 2WDWA 4PVEA 1VAOA 3BW7A 4BBYA 2W55A 2BVGA 2VFUA 3W8XA 1RM6B 2BVFA 4BC9A 4XLOA 3S1DA 1N60C 1E8HA 2VFRA 1FFUC 4MLAA 2EXRA 1W1SA 2VAOA 3JS8A 2GQUA 1W1KA 3TSHA 2RK5A 1I19A 3D2HA 2YVSA 3POPA 1FFVC 1JRPA 3D2JA 5L6FA 3S1CA 1DIQA 2P13A 3B9JB 2O3GA 3EUB3 3AM9A 4BC7A 4PWBA 3LLBA 1N62C 2QKNA 5G5HB 4HG0A 3S1EA 1V97A 3NVYB 2Y3SA 2W3SA 1DZNA 1VDVA 3NVVB 2Y4GA 3RJ8A 1AHVA 2W3RA 5HQXA 2NQWA 2R8DA 1W1RA 3AMZA 4OALA 3EJDB 3NS1B 2W54A 1W1OA 2QPMA 3W8ZA 1UXYA 2MBRA 1W1MA 2VFTA 3FW9A 3RJAA 5FXDA 5AE1A 5K8EA 1MBBA 1MBTA 5HMRA 3HSUA 2AXRA 3PM9A 3S1FA
chains in the Genus database with same CATH topology
5HHZA 2GQTA 2VFSA 4O95A 2PLSA 2R2ZA 1FIQB 5D79A 4DNSA 1F0XA 2Y3RA 1E0YA 3NRZB 3TX1A 2Y08A 1ZR6A 1N5XA 2P3HA 3D2DA 3HRDC 5AWVA 2VFVA 2E3TA 5G5GB 1DIIA 2UUVA 3KJMA 4JAYA 3I99A 1WVEA 4PVKA 5AE2A 1WVFA 3NVZB 2UUUA 3ETRB 2P4PA 1E8GA 2PLIA 3NVWB 1WYGA 2BVHA 2I0KA 5I1VA 3TSJA 5FXEA 2IPIA 3LAEA 5ADZA 2Q4WA 1AHZA 4PVHA 4PWCA 5L6GA 1ZXIC 5I1WA 1HSKA 1JROA 5FXFA 2OAIA 3AN1A 3GSYA 5FXPA 3VTEA 1W1LA 1N61C 4ZOHB 1N63C 3C0PA 3DQ0A 3W8WA 4JB1A 1AHUA 3FW8A 4ML8A 3PQBA 1QLTA 1W1QA 4PVJA 1SB3B 1E8FA 1QLUA 4EC3A 4PYTA 4UD8A 3DEDA 1N5WC 4BCAA 3FWAA 3SR6B 4PZFA 5AE3A 2Q85A 3FW7A 1T3QC 1FO4A 1W1JA 2WDWA 4PVEA 1VAOA 3BW7A 4BBYA 2W55A 2BVGA 2VFUA 3W8XA 1RM6B 2BVFA 4BC9A 4XLOA 3S1DA 1N60C 1E8HA 2VFRA 1FFUC 4MLAA 2EXRA 1W1SA 2VAOA 3JS8A 2GQUA 1W1KA 3TSHA 2RK5A 1I19A 3D2HA 2YVSA 3POPA 1FFVC 1JRPA 3D2JA 5L6FA 3S1CA 1DIQA 2P13A 3B9JB 2O3GA 3EUB3 3AM9A 4BC7A 4PWBA 3LLBA 1N62C 2QKNA 5G5HB 4HG0A 3S1EA 1V97A 3NVYB 2Y3SA 2W3SA 1DZNA 1VDVA 3NVVB 2Y4GA 3RJ8A 1AHVA 2W3RA 5HQXA 2NQWA 2R8DA 1W1RA 3AMZA 4OALA 3NS1B 2W54A 1W1OA 2QPMA 3W8ZA 1UXYA 2MBRA 1W1MA 2VFTA 3FW9A 3RJAA 5FXDA 5AE1A 5K8EA 1MBBA 1MBTA 5HMRA 3HSUA 2AXRA 3PM9A 3S1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HHZ A;  2GQT A;  2VFS A;  4O95 A;  2PLS A;  2R2Z A;  1FIQ B;  5D79 A;  4DNS A;  1F0X A;  1E0Y A;  3NRZ B;  3TX1 A;  1ZR6 A;  1N5X A;  2P3H A;  3D2D A;  3HRD C;  5G5G B;  2VFV A;  2E3T A;  1DII A;  3KJM A;  4JAY A;  3I99 A;  1WVE A;  4PVK A;  5AE2 A;  1WVF A;  3NVZ B;  3NVW B;  3ETR B;  2P4P A;  1E8G A;  2PLI A;  1WYG A;  2BVH A;  2I0K A;  3TSJ A;  5FXE A;  3LAE A;  5ADZ A;  2Q4W A;  1AHZ A;  4PVH A;  4PWC A;  1ZXI C;  1HSK A;  1JRO A;  5FXF A;  2OAI A;  3AN1 A;  3GSY A;  5FXP A;  3VTE A;  1W1L A;  1N61 C;  4ZOH B;  1N63 C;  3C0P A;  3DQ0 A;  3W8W A;  4JB1 A;  1AHU A;  3FW8 A;  4ML8 A;  1QLT A;  1W1Q A;  4PVJ A;  1SB3 B;  1E8F A;  1QLU A;  4EC3 A;  4PYT A;  4UD8 A;  3DED A;  1N5W C;  4BCA A;  3FWA A;  3SR6 B;  4PZF A;  5AE3 A;  2Q85 A;  3FW7 A;  1T3Q C;  1FO4 A;  1W1J A;  4PVE A;  1VAO A;  3BW7 A;  4BBY A;  2W55 A;  2BVG A;  2VFU A;  3W8X A;  1RM6 B;  2BVF A;  4BC9 A;  4XLO A;  3S1D A;  1N60 C;  1E8H A;  2VFR A;  1FFU C;  4MLA A;  2EXR A;  1W1S A;  2VAO A;  3JS8 A;  2GQU A;  1W1K A;  3TSH A;  2RK5 A;  1I19 A;  3D2H A;  2YVS A;  1FFV C;  1JRP A;  3D2J A;  3S1C A;  1DIQ A;  2P13 A;  3B9J B;  2O3G A;  3EUB 3;  3AM9 A;  4BC7 A;  4PWB A;  3LLB A;  1N62 C;  2QKN A;  5G5H B;  4HG0 A;  3S1E A;  1V97 A;  3NVY B;  2W3S A;  1DZN A;  1VDV A;  3NVV B;  1AHV A;  2W3R A;  5HQX A;  2NQW A;  2R8D A;  1W1R A;  3AMZ A;  4OAL A;  3NS1 B;  2W54 A;  1W1O A;  2QPM A;  3W8Z A;  1UXY A;  2MBR A;  1W1M A;  2VFT A;  3FW9 A;  5FXD A;  5AE1 A;  1MBB A;  1MBT A;  5HMR A;  2AXR A;  3PM9 A;  3S1F A; 
#chains in the Genus database with same CATH topology
 5HHZ A;  2GQT A;  2VFS A;  4O95 A;  2PLS A;  2R2Z A;  1FIQ B;  3EJB B;  5D79 A;  4DNS A;  1F0X A;  2Y3R A;  1E0Y A;  3NRZ B;  3TX1 A;  2Y08 A;  1ZR6 A;  1N5X A;  2P3H A;  3D2D A;  3HRD C;  5AWV A;  2VFV A;  2E3T A;  5G5G B;  1DII A;  2UUV A;  3KJM A;  4JAY A;  3I99 A;  1WVE A;  4PVK A;  5AE2 A;  1WVF A;  3NVZ B;  3NVW B;  3ETR B;  2P4P A;  1E8G A;  2PLI A;  2UUU A;  1WYG A;  2BVH A;  2I0K A;  5I1V A;  3TSJ A;  5FXE A;  2IPI A;  3LAE A;  5ADZ A;  2Q4W A;  1AHZ A;  4PVH A;  4PWC A;  5L6G A;  1ZXI C;  5I1W A;  1HSK A;  3EJE B;  1JRO A;  5FXF A;  2OAI A;  3AN1 A;  3GSY A;  5FXP A;  3VTE A;  1W1L A;  1N61 C;  4ZOH B;  1N63 C;  3C0P A;  3DQ0 A;  3W8W A;  4JB1 A;  1AHU A;  3FW8 A;  4ML8 A;  3PQB A;  1QLT A;  1W1Q A;  4PVJ A;  1SB3 B;  1E8F A;  1QLU A;  4EC3 A;  4PYT A;  4UD8 A;  3DED A;  1N5W C;  4BCA A;  3FWA A;  3SR6 B;  4PZF A;  5AE3 A;  2Q85 A;  3FW7 A;  1T3Q C;  1FO4 A;  1W1J A;  2WDW A;  4PVE A;  1VAO A;  3BW7 A;  4BBY A;  2W55 A;  2BVG A;  2VFU A;  3W8X A;  1RM6 B;  2BVF A;  4BC9 A;  4XLO A;  3S1D A;  1N60 C;  1E8H A;  2VFR A;  1FFU C;  4MLA A;  2EXR A;  1W1S A;  2VAO A;  3JS8 A;  2GQU A;  1W1K A;  3TSH A;  2RK5 A;  1I19 A;  3D2H A;  2YVS A;  3POP A;  1FFV C;  1JRP A;  3D2J A;  5L6F A;  3S1C A;  1DIQ A;  2P13 A;  3B9J B;  2O3G A;  3EUB 3;  3AM9 A;  4BC7 A;  4PWB A;  3LLB A;  1N62 C;  2QKN A;  5G5H B;  4HG0 A;  3S1E A;  1V97 A;  3NVY B;  2Y3S A;  2W3S A;  1DZN A;  1VDV A;  3NVV B;  2Y4G A;  3RJ8 A;  1AHV A;  2W3R A;  5HQX A;  2NQW A;  2R8D A;  1W1R A;  3AMZ A;  4OAL A;  3EJD B;  3NS1 B;  2W54 A;  1W1O A;  2QPM A;  3W8Z A;  1UXY A;  2MBR A;  1W1M A;  2VFT A;  3FW9 A;  3RJA A;  5FXD A;  5AE1 A;  5K8E A;  1MBB A;  1MBT A;  5HMR A;  3HSU A;  2AXR A;  3PM9 A;  3S1F A; 
#chains in the Genus database with same CATH homology
 5HHZ A;  2GQT A;  2VFS A;  4O95 A;  2PLS A;  2R2Z A;  1FIQ B;  5D79 A;  4DNS A;  1F0X A;  2Y3R A;  1E0Y A;  3NRZ B;  3TX1 A;  2Y08 A;  1ZR6 A;  1N5X A;  2P3H A;  3D2D A;  3HRD C;  5AWV A;  2VFV A;  2E3T A;  5G5G B;  1DII A;  2UUV A;  3KJM A;  4JAY A;  3I99 A;  1WVE A;  4PVK A;  5AE2 A;  1WVF A;  3NVZ B;  2UUU A;  3ETR B;  2P4P A;  1E8G A;  2PLI A;  3NVW B;  1WYG A;  2BVH A;  2I0K A;  5I1V A;  3TSJ A;  5FXE A;  2IPI A;  3LAE A;  5ADZ A;  2Q4W A;  1AHZ A;  4PVH A;  4PWC A;  5L6G A;  1ZXI C;  5I1W A;  1HSK A;  1JRO A;  5FXF A;  2OAI A;  3AN1 A;  3GSY A;  5FXP A;  3VTE A;  1W1L A;  1N61 C;  4ZOH B;  1N63 C;  3C0P A;  3DQ0 A;  3W8W A;  4JB1 A;  1AHU A;  3FW8 A;  4ML8 A;  3PQB A;  1QLT A;  1W1Q A;  4PVJ A;  1SB3 B;  1E8F A;  1QLU A;  4EC3 A;  4PYT A;  4UD8 A;  3DED A;  1N5W C;  4BCA A;  3FWA A;  3SR6 B;  4PZF A;  5AE3 A;  2Q85 A;  3FW7 A;  1T3Q C;  1FO4 A;  1W1J A;  2WDW A;  4PVE A;  1VAO A;  3BW7 A;  4BBY A;  2W55 A;  2BVG A;  2VFU A;  3W8X A;  1RM6 B;  2BVF A;  4BC9 A;  4XLO A;  3S1D A;  1N60 C;  1E8H A;  2VFR A;  1FFU C;  4MLA A;  2EXR A;  1W1S A;  2VAO A;  3JS8 A;  2GQU A;  1W1K A;  3TSH A;  2RK5 A;  1I19 A;  3D2H A;  2YVS A;  3POP A;  1FFV C;  1JRP A;  3D2J A;  5L6F A;  3S1C A;  1DIQ A;  2P13 A;  3B9J B;  2O3G A;  3EUB 3;  3AM9 A;  4BC7 A;  4PWB A;  3LLB A;  1N62 C;  2QKN A;  5G5H B;  4HG0 A;  3S1E A;  1V97 A;  3NVY B;  2Y3S A;  2W3S A;  1DZN A;  1VDV A;  3NVV B;  2Y4G A;  3RJ8 A;  1AHV A;  2W3R A;  5HQX A;  2NQW A;  2R8D A;  1W1R A;  3AMZ A;  4OAL A;  3NS1 B;  2W54 A;  1W1O A;  2QPM A;  3W8Z A;  1UXY A;  2MBR A;  1W1M A;  2VFT A;  3FW9 A;  3RJA A;  5FXD A;  5AE1 A;  5K8E A;  1MBB A;  1MBT A;  5HMR A;  3HSU A;  2AXR A;  3PM9 A;  3S1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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