5I1WA

Crystal structure of crmk, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TRAAVTVKPDDHRYDLLARADNYRFVAQPEYFRLPYSTAQVVEAVSEAVAAGKRLTVRSGGHCGEAFVASPDVDVIVDLSSMSHVGYDEERGAFEVEAGATVGQIYRVLYKNYGVTFPGGFCMGVGAGGHISGGGYGPLSRLLGLTVDYLHAVEVVVVDAEGVVSTVVATREEDDPNRDLWWAHTGGGGGNFGVITRYWLRSPDAVGDAPEEALPRPPASFHVARVSWSWAELTEADYVRLVSNFLDWQLRNCTVDSPNIGLYALLECFHRSAGHLAMHAQIPVDVPDAEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLRGPHTREQLAAAYRHLSRADYHCPSAAMEYIAYGGRVNTVDPAATAVPRGASLKTFYMVAWTDPDEDEEHLRWIREIYRDIHSATGGVPTPDEVNTGAYINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRNVFRHAFSIRPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis
rcsb
source organism Actinoalloteichus sp. wh1-2216-6
molecule tags Oxidoreductase
molecule keywords CrmK
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5i1wA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5i1wA02
2WDWA 5D79A 2Y08A 2AXRA 5I1VA 5L6FA 5AWVA 2BVGA 3FW7A 3GSYA 4PWCA 4EC3A 2UUUA 5I1WA 4PWBA 3W8XA 3TSJA 4PVEA 2Y3RA 5L6GA 3TSHA 3FW8A 3W8WA 3FWAA 4PVJA 4PZFA 2Y4GA 4PVHA 2IPIA 3W8ZA 4XLOA 4DNSA 5K8EA 2Y3SA 3PQBA 3RJAA 3D2JA 3VTEA 1ZR6A 3FW9A 3POPA 4UD8A 3D2HA 3RJ8A 2BVFA 4PVKA 2BVHA 3HSUA 2UUVA 3D2DA
chains in the Genus database with same CATH superfamily
5G5GB 5ADZA 2VFRA 3I99A 5I1VA 1E8GA 2VAOA 5I1WA 2W3SA 1N61C 3TSJA 4BBYA 5FXPA 2MBRA 3NVVB 1W1RA 3TSHA 3FW8A 2Q85A 4PVJA 4PYTA 2Y4GA 5AE3A 1DIIA 1ZXIC 1AHUA 3AN1A 3SR6B 1WVFA 1FFUC 3HRDC 4DNSA 1DIQA 3D2JA 1W1SA 3AMZA 3PQBA 1E8FA 2OAIA 1W1MA 3POPA 3JS8A 2O3GA 2Q4WA 3BW7A 3RJ8A 3DEDA 1W1JA 4BCAA 3LAEA 4MLAA 2WDWA 1N60C 3ETRB 1I19A 1MBTA 1E8HA 3NVWB 4ML8A 2W3RA 5HQXA 4PWBA 3S1DA 1AHVA 3W8XA 3TX1A 1WYGA 2EXRA 2VFSA 3DQ0A 5L6GA 1N62C 4BC9A 2E3TA 1FFVC 5HHZA 4PZFA 4PVHA 5G5HB 2IPIA 4XLOA 1ZR6A 2W55A 2NQWA 2YVSA 1VDVA 2VFTA 2BVHA 3S1EA 3VTEA 3NVYB 2GQUA 2QPMA 2AXRA 2R8DA 3GSYA 2BVGA 3FW7A 5AWVA 5L6FA 4EC3A 1WVEA 3LLBA 2PLSA 1VAOA 2P4PA 4BC7A 1JROA 1SB3B 3C0PA 4HG0A 3W8WA 3FWAA 2RK5A 1W1QA 3NS1B 1T3QC 2I0KA 2QKNA 5HMRA 3W8ZA 1W1LA 5K8EA 3B9JB 1E0YA 3RJAA 1V97A 3AM9A 3FW9A 3D2HA 2BVFA 1F0XA 3NRZB 1FIQB 4PVKA 3KJMA 2P3HA 3HSUA 5D79A 4JB1A 2Y08A 2W54A 1QLTA 3EUB3 4PWCA 2VFVA 3S1CA 3S1FA 1W1OA 2UUUA 3NVZB 1UXYA 5FXFA 5AE2A 1N5WC 1QLUA 1W1KA 2VFUA 3PM9A 4PVEA 2Y3RA 5FXDA 1MBBA 2P13A 1JRPA 4ZOHB 2PLIA 4OALA 5AE1A 4O95A 1N63C 1AHZA 2Y3SA 1DZNA 2GQTA 1N5XA 4UD8A 1HSKA 1FO4A 5FXEA 1RM6B 2R2ZA 2UUVA 4JAYA 3D2DA
chains in the Genus database with same CATH topology
5G5GB 5ADZA 2VFRA 3I99A 5I1VA 1E8GA 2VAOA 5I1WA 2W3SA 1N61C 3TSJA 4BBYA 5FXPA 2MBRA 3NVVB 1W1RA 3TSHA 3FW8A 2Q85A 4PVJA 4PYTA 2Y4GA 5AE3A 1DIIA 1ZXIC 1AHUA 3AN1A 3SR6B 1WVFA 1FFUC 3HRDC 4DNSA 1DIQA 3D2JA 1W1SA 3AMZA 3PQBA 1E8FA 2OAIA 1W1MA 3POPA 3JS8A 2O3GA 2Q4WA 3BW7A 3RJ8A 3DEDA 1W1JA 4BCAA 3LAEA 4MLAA 2WDWA 1N60C 3ETRB 1I19A 1MBTA 1E8HA 3NVWB 4ML8A 2W3RA 5HQXA 4PWBA 3S1DA 1AHVA 3W8XA 3TX1A 1WYGA 2EXRA 2VFSA 3DQ0A 5L6GA 1N62C 4BC9A 2E3TA 1FFVC 5HHZA 4PZFA 4PVHA 5G5HB 2IPIA 4XLOA 1ZR6A 2W55A 2NQWA 2YVSA 1VDVA 2VFTA 2BVHA 3S1EA 3VTEA 3NVYB 2GQUA 2QPMA 2AXRA 2R8DA 3GSYA 2BVGA 3FW7A 5AWVA 5L6FA 4EC3A 1WVEA 3LLBA 2PLSA 1VAOA 2P4PA 4BC7A 1JROA 1SB3B 3C0PA 4HG0A 3W8WA 3FWAA 2RK5A 1W1QA 3NS1B 1T3QC 2I0KA 2QKNA 5HMRA 3W8ZA 1W1LA 5K8EA 3B9JB 1E0YA 3RJAA 1V97A 3AM9A 3FW9A 3D2HA 2BVFA 1F0XA 3NRZB 1FIQB 4PVKA 3KJMA 2P3HA 3HSUA 5D79A 4JB1A 2Y08A 2W54A 1QLTA 3EUB3 4PWCA 2VFVA 3S1CA 3S1FA 1W1OA 2UUUA 3NVZB 1UXYA 5FXFA 5AE2A 1N5WC 1QLUA 1W1KA 2VFUA 3PM9A 4PVEA 2Y3RA 5FXDA 1MBBA 2P13A 1JRPA 4ZOHB 2PLIA 4OALA 5AE1A 4O95A 1N63C 1AHZA 2Y3SA 1DZNA 2GQTA 1N5XA 4UD8A 1HSKA 1FO4A 5FXEA 1RM6B 2R2ZA 2UUVA 4JAYA 3D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDW A;  5D79 A;  2Y08 A;  2AXR A;  5I1V A;  5L6F A;  5AWV A;  2BVG A;  3FW7 A;  3GSY A;  4PWC A;  4EC3 A;  2UUU A;  5I1W A;  4PWB A;  3W8X A;  3TSJ A;  4PVE A;  2Y3R A;  5L6G A;  3TSH A;  3FW8 A;  3W8W A;  3FWA A;  4PVJ A;  4PZF A;  2Y4G A;  4PVH A;  2IPI A;  3W8Z A;  4XLO A;  4DNS A;  5K8E A;  2Y3S A;  3PQB A;  3RJA A;  3D2J A;  3VTE A;  1ZR6 A;  3FW9 A;  3POP A;  4UD8 A;  3D2H A;  3RJ8 A;  2BVF A;  4PVK A;  2BVH A;  3HSU A;  2UUV A;  3D2D A; 
#chains in the Genus database with same CATH topology
 5G5G B;  5ADZ A;  2VFR A;  3I99 A;  5I1V A;  1E8G A;  2VAO A;  5I1W A;  2W3S A;  1N61 C;  3TSJ A;  4BBY A;  5FXP A;  2MBR A;  3NVV B;  1W1R A;  3TSH A;  3FW8 A;  2Q85 A;  4PVJ A;  4PYT A;  2Y4G A;  5AE3 A;  1DII A;  1ZXI C;  1AHU A;  3AN1 A;  3SR6 B;  1WVF A;  1FFU C;  3HRD C;  4DNS A;  1DIQ A;  3D2J A;  1W1S A;  3AMZ A;  3PQB A;  1E8F A;  2OAI A;  1W1M A;  3POP A;  3JS8 A;  2O3G A;  2Q4W A;  3BW7 A;  3RJ8 A;  3DED A;  1W1J A;  4BCA A;  3LAE A;  4MLA A;  2WDW A;  1N60 C;  3ETR B;  1I19 A;  1MBT A;  1E8H A;  3NVW B;  4ML8 A;  2W3R A;  5HQX A;  4PWB A;  3S1D A;  1AHV A;  3W8X A;  3TX1 A;  1WYG A;  2EXR A;  2VFS A;  3DQ0 A;  5L6G A;  1N62 C;  4BC9 A;  2E3T A;  1FFV C;  5HHZ A;  4PZF A;  4PVH A;  5G5H B;  2IPI A;  4XLO A;  1ZR6 A;  2W55 A;  2NQW A;  2YVS A;  1VDV A;  2VFT A;  2BVH A;  3S1E A;  3VTE A;  3NVY B;  2GQU A;  2QPM A;  2AXR A;  2R8D A;  3GSY A;  2BVG A;  3FW7 A;  5AWV A;  5L6F A;  4EC3 A;  1WVE A;  3LLB A;  2PLS A;  1VAO A;  2P4P A;  4BC7 A;  1JRO A;  1SB3 B;  3C0P A;  4HG0 A;  3W8W A;  3FWA A;  2RK5 A;  1W1Q A;  3NS1 B;  1T3Q C;  2I0K A;  2QKN A;  5HMR A;  3W8Z A;  1W1L A;  5K8E A;  3B9J B;  1E0Y A;  3RJA A;  1V97 A;  3AM9 A;  3FW9 A;  3D2H A;  2BVF A;  1F0X A;  3NRZ B;  1FIQ B;  4PVK A;  3KJM A;  2P3H A;  3HSU A;  5D79 A;  4JB1 A;  2Y08 A;  2W54 A;  1QLT A;  3EUB 3;  4PWC A;  2VFV A;  3S1C A;  3S1F A;  1W1O A;  2UUU A;  3NVZ B;  1UXY A;  5FXF A;  5AE2 A;  1N5W C;  1QLU A;  1W1K A;  2VFU A;  3PM9 A;  4PVE A;  2Y3R A;  5FXD A;  1MBB A;  2P13 A;  1JRP A;  4ZOH B;  2PLI A;  4OAL A;  5AE1 A;  4O95 A;  1N63 C;  1AHZ A;  2Y3S A;  1DZN A;  2GQT A;  1N5X A;  4UD8 A;  1HSK A;  1FO4 A;  5FXE A;  1RM6 B;  2R2Z A;  2UUV A;  4JAY A;  3D2D A; 
#chains in the Genus database with same CATH homology
 5G5G B;  5ADZ A;  2VFR A;  3I99 A;  5I1V A;  1E8G A;  2VAO A;  5I1W A;  2W3S A;  1N61 C;  3TSJ A;  4BBY A;  5FXP A;  2MBR A;  3NVV B;  1W1R A;  3TSH A;  3FW8 A;  2Q85 A;  4PVJ A;  4PYT A;  2Y4G A;  5AE3 A;  1DII A;  1ZXI C;  1AHU A;  3AN1 A;  3SR6 B;  1WVF A;  1FFU C;  3HRD C;  4DNS A;  1DIQ A;  3D2J A;  1W1S A;  3AMZ A;  3PQB A;  1E8F A;  2OAI A;  1W1M A;  3POP A;  3JS8 A;  2O3G A;  2Q4W A;  3BW7 A;  3RJ8 A;  3DED A;  1W1J A;  4BCA A;  3LAE A;  4MLA A;  2WDW A;  1N60 C;  3ETR B;  1I19 A;  1MBT A;  1E8H A;  3NVW B;  4ML8 A;  2W3R A;  5HQX A;  4PWB A;  3S1D A;  1AHV A;  3W8X A;  3TX1 A;  1WYG A;  2EXR A;  2VFS A;  3DQ0 A;  5L6G A;  1N62 C;  4BC9 A;  2E3T A;  1FFV C;  5HHZ A;  4PZF A;  4PVH A;  5G5H B;  2IPI A;  4XLO A;  1ZR6 A;  2W55 A;  2NQW A;  2YVS A;  1VDV A;  2VFT A;  2BVH A;  3S1E A;  3VTE A;  3NVY B;  2GQU A;  2QPM A;  2AXR A;  2R8D A;  3GSY A;  2BVG A;  3FW7 A;  5AWV A;  5L6F A;  4EC3 A;  1WVE A;  3LLB A;  2PLS A;  1VAO A;  2P4P A;  4BC7 A;  1JRO A;  1SB3 B;  3C0P A;  4HG0 A;  3W8W A;  3FWA A;  2RK5 A;  1W1Q A;  3NS1 B;  1T3Q C;  2I0K A;  2QKN A;  5HMR A;  3W8Z A;  1W1L A;  5K8E A;  3B9J B;  1E0Y A;  3RJA A;  1V97 A;  3AM9 A;  3FW9 A;  3D2H A;  2BVF A;  1F0X A;  3NRZ B;  1FIQ B;  4PVK A;  3KJM A;  2P3H A;  3HSU A;  5D79 A;  4JB1 A;  2Y08 A;  2W54 A;  1QLT A;  3EUB 3;  4PWC A;  2VFV A;  3S1C A;  3S1F A;  1W1O A;  2UUU A;  3NVZ B;  1UXY A;  5FXF A;  5AE2 A;  1N5W C;  1QLU A;  1W1K A;  2VFU A;  3PM9 A;  4PVE A;  2Y3R A;  5FXD A;  1MBB A;  2P13 A;  1JRP A;  4ZOH B;  2PLI A;  4OAL A;  5AE1 A;  4O95 A;  1N63 C;  1AHZ A;  2Y3S A;  1DZN A;  2GQT A;  1N5X A;  4UD8 A;  1HSK A;  1FO4 A;  5FXE A;  1RM6 B;  2R2Z A;  2UUV A;  4JAY A;  3D2D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...