5I1WA

Crystal structure of crmk, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
b'TRAAVTVKPDDHRYDLLARADNYRFVAQPEYFRLPYSTAQVVEAVSEAVAAGKRLTVRSGGHCGEAFVASPDVDVIVDLSSMSHVGYDEERGAFEVEAGATVGQIYRVLYKNYGVTFPGGFCMGVGAGGHISGGGYGPLSRLLGLTVDYLHAVEVVVVDAEGVVSTVVATREEDDPNRDLWWAHTGGGGGNFGVITRYWLRSPDAVGDAPEEALPRPPASFHVARVSWSWAELTEADYVRLVSNFLDWQLRNCTVDSPNIGLYALLECFHRSAGHLAMHAQIPVDVPDAEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLRGPHTREQLAAAYRHLSRADYHCPSAAMEYIAYGGRVNTVDPAATAVPRGASLKTFYMVAWTDPDEDEEHLRWIREIYRDIHSATGGVPTPDEVNTGAYINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRNVFRHAFSIRPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CrmK
publication title Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis
rcsb
source organism Actinoalloteichus sp. wh1-2216-6
molecule tags Oxidoreductase
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5i1wA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5i1wA02
3POPA 2Y4GA 5L6GA 4PVKA 5L6FA 2Y08A 2IPIA 4PVEA 2UUUA 4PZFA 3FWAA 2UUVA 3D2JA 4UD8A 3FW7A 3RJ8A 3GSYA 3VTEA 3RJAA 3HSUA 4PVJA 2BVHA 3TSHA 3W8WA 3FW9A 5I1VA 2Y3SA 4PWBA 3TSJA 4DNSA 3FW8A 5I1WA 3PQBA 3D2HA 5D79A 4PVHA 4EC3A 3D2DA 4PWCA 4XLOA 3W8ZA 5K8EA 1ZR6A 3W8XA 5AWVA 2BVFA 2WDWA 2AXRA 2BVGA 2Y3RA
chains in the Genus database with same CATH superfamily
2Y4GA 1UXYA 5G5GB 1WYGA 3ETRB 5AE1A 2IPIA 4ML8A 5AE2A 1T3QC 3EUB3 3AMZA 4MLAA 3S1FA 4O95A 3NVWB 2GQUA 2QKNA 5AE3A 2Y3SA 4PWBA 3TSJA 1W1SA 3FW8A 2Q85A 1N63C 2GQTA 2PLIA 2O3GA 2R8DA 3C0PA 3HRDC 3D2DA 2VFSA 2W3SA 3KJMA 1DIQA 1W1OA 2BVFA 1JROA 1DIIA 1W1JA 2R2ZA 1E0YA 2BVGA 4ZOHB 2W55A 2Y08A 4PZFA 1N5WC 3B9JB 1W1QA 1FFVC 1I19A 3FW7A 3S1EA 3RJ8A 1E8HA 3GSYA 3SR6B 4BBYA 4BC9A 3W8WA 3FW9A 5HMRA 3NVYB 2MBRA 3NRZB 3S1DA 3LLBA 5ADZA 3BW7A 4DNSA 3PQBA 1WVEA 5HHZA 1N62C 1W1MA 1AHUA 5HQXA 5G5HB 3W8XA 1N60C 3DEDA 4HG0A 1RM6B 1AHVA 1W1LA 1WVFA 2E3TA 2EXRA 4PYTA 1HSKA 1V97A 2YVSA 2NQWA 2UUUA 3NS1B 1QLTA 2RK5A 4OALA 2P3HA 1VAOA 3FWAA 4JAYA 2UUVA 3D2JA 4UD8A 1FO4A 1N61C 3VTEA 2P4PA 1QLUA 2QPMA 4PVJA 3RJAA 4BC7A 1MBTA 2VAOA 1ZXIC 1VDVA 3JS8A 4JB1A 3D2HA 5FXFA 1FFUC 2PLSA 3DQ0A 3W8ZA 1ZR6A 1MBBA 1AHZA 3AN1A 1DZNA 2AXRA 2WDWA 2W54A 3AM9A 5FXDA 1W1RA 2Y3RA 3I99A 1F0XA 3POPA 4PVKA 5L6GA 5L6FA 3LAEA 3PM9A 4PVEA 2VFVA 2I0KA 1E8FA 3HSUA 1SB3B 2BVHA 2VFRA 3TSHA 3NVZB 5I1VA 3S1CA 1N5XA 5FXPA 5D79A 5I1WA 4PVHA 1W1KA 1FIQB 4EC3A 4PWCA 4XLOA 5K8EA 2VFTA 2Q4WA 3NVVB 4BCAA 2P13A 5AWVA 1JRPA 2W3RA 1E8GA 2VFUA 2OAIA 3TX1A 5FXEA
chains in the Genus database with same CATH topology
2Y4GA 1UXYA 5G5GB 1WYGA 3ETRB 5AE1A 2IPIA 4ML8A 5AE2A 1T3QC 3EUB3 3AMZA 4MLAA 3S1FA 4O95A 3NVWB 2GQUA 2QKNA 5AE3A 2Y3SA 4PWBA 3TSJA 1W1SA 3FW8A 2Q85A 1N63C 2GQTA 2PLIA 2O3GA 2R8DA 3C0PA 3HRDC 3D2DA 2VFSA 2W3SA 3KJMA 1DIQA 1W1OA 2BVFA 1JROA 1DIIA 1W1JA 2R2ZA 1E0YA 2BVGA 4ZOHB 2W55A 2Y08A 4PZFA 1N5WC 3B9JB 1W1QA 1FFVC 1I19A 3FW7A 3S1EA 3RJ8A 1E8HA 3GSYA 3SR6B 4BBYA 4BC9A 3W8WA 3FW9A 5HMRA 3NVYB 2MBRA 3NRZB 3S1DA 3LLBA 5ADZA 3BW7A 4DNSA 3PQBA 1WVEA 5HHZA 1N62C 1W1MA 1AHUA 5HQXA 5G5HB 3W8XA 1N60C 3DEDA 4HG0A 1RM6B 1AHVA 1W1LA 1WVFA 2E3TA 2EXRA 4PYTA 1HSKA 1V97A 2YVSA 2NQWA 2UUUA 3NS1B 1QLTA 2RK5A 4OALA 2P3HA 1VAOA 3FWAA 4JAYA 2UUVA 3D2JA 4UD8A 1FO4A 1N61C 3VTEA 2P4PA 1QLUA 2QPMA 4PVJA 3RJAA 4BC7A 1MBTA 2VAOA 1ZXIC 1VDVA 3JS8A 4JB1A 3D2HA 5FXFA 1FFUC 2PLSA 3DQ0A 3W8ZA 1ZR6A 1MBBA 1AHZA 3AN1A 1DZNA 2AXRA 2WDWA 2W54A 3AM9A 5FXDA 1W1RA 2Y3RA 3I99A 1F0XA 3POPA 4PVKA 5L6GA 5L6FA 3LAEA 3PM9A 4PVEA 2VFVA 2I0KA 1E8FA 3HSUA 1SB3B 2BVHA 2VFRA 3TSHA 3NVZB 5I1VA 3S1CA 1N5XA 5FXPA 5D79A 5I1WA 4PVHA 1W1KA 1FIQB 4EC3A 4PWCA 4XLOA 5K8EA 2VFTA 2Q4WA 3NVVB 4BCAA 2P13A 5AWVA 1JRPA 2W3RA 1E8GA 2VFUA 2OAIA 3TX1A 5FXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3POP A;  2Y4G A;  5L6G A;  4PVK A;  5L6F A;  2Y08 A;  2IPI A;  4PVE A;  2UUU A;  4PZF A;  3FWA A;  2UUV A;  3D2J A;  4UD8 A;  3FW7 A;  3RJ8 A;  3GSY A;  3VTE A;  3RJA A;  3HSU A;  4PVJ A;  2BVH A;  3TSH A;  3W8W A;  3FW9 A;  5I1V A;  2Y3S A;  4PWB A;  3TSJ A;  4DNS A;  3FW8 A;  5I1W A;  3PQB A;  3D2H A;  5D79 A;  4PVH A;  4EC3 A;  3D2D A;  4PWC A;  4XLO A;  3W8Z A;  5K8E A;  1ZR6 A;  3W8X A;  5AWV A;  2BVF A;  2WDW A;  2AXR A;  2BVG A;  2Y3R A; 
#chains in the Genus database with same CATH topology
 2Y4G A;  1UXY A;  5G5G B;  1WYG A;  3ETR B;  5AE1 A;  2IPI A;  4ML8 A;  5AE2 A;  1T3Q C;  3EUB 3;  3AMZ A;  4MLA A;  3S1F A;  4O95 A;  3NVW B;  2GQU A;  2QKN A;  5AE3 A;  2Y3S A;  4PWB A;  3TSJ A;  1W1S A;  3FW8 A;  2Q85 A;  1N63 C;  2GQT A;  2PLI A;  2O3G A;  2R8D A;  3C0P A;  3HRD C;  3D2D A;  2VFS A;  2W3S A;  3KJM A;  1DIQ A;  1W1O A;  2BVF A;  1JRO A;  1DII A;  1W1J A;  2R2Z A;  1E0Y A;  2BVG A;  4ZOH B;  2W55 A;  2Y08 A;  4PZF A;  1N5W C;  3B9J B;  1W1Q A;  1FFV C;  1I19 A;  3FW7 A;  3S1E A;  3RJ8 A;  1E8H A;  3GSY A;  3SR6 B;  4BBY A;  4BC9 A;  3W8W A;  3FW9 A;  5HMR A;  3NVY B;  2MBR A;  3NRZ B;  3S1D A;  3LLB A;  5ADZ A;  3BW7 A;  4DNS A;  3PQB A;  1WVE A;  5HHZ A;  1N62 C;  1W1M A;  1AHU A;  5HQX A;  5G5H B;  3W8X A;  1N60 C;  3DED A;  4HG0 A;  1RM6 B;  1AHV A;  1W1L A;  1WVF A;  2E3T A;  2EXR A;  4PYT A;  1HSK A;  1V97 A;  2YVS A;  2NQW A;  2UUU A;  3NS1 B;  1QLT A;  2RK5 A;  4OAL A;  2P3H A;  1VAO A;  3FWA A;  4JAY A;  2UUV A;  3D2J A;  4UD8 A;  1FO4 A;  1N61 C;  3VTE A;  2P4P A;  1QLU A;  2QPM A;  4PVJ A;  3RJA A;  4BC7 A;  1MBT A;  2VAO A;  1ZXI C;  1VDV A;  3JS8 A;  4JB1 A;  3D2H A;  5FXF A;  1FFU C;  2PLS A;  3DQ0 A;  3W8Z A;  1ZR6 A;  1MBB A;  1AHZ A;  3AN1 A;  1DZN A;  2AXR A;  2WDW A;  2W54 A;  3AM9 A;  5FXD A;  1W1R A;  2Y3R A;  3I99 A;  1F0X A;  3POP A;  4PVK A;  5L6G A;  5L6F A;  3LAE A;  3PM9 A;  4PVE A;  2VFV A;  2I0K A;  1E8F A;  3HSU A;  1SB3 B;  2BVH A;  2VFR A;  3TSH A;  3NVZ B;  5I1V A;  3S1C A;  1N5X A;  5FXP A;  5D79 A;  5I1W A;  4PVH A;  1W1K A;  1FIQ B;  4EC3 A;  4PWC A;  4XLO A;  5K8E A;  2VFT A;  2Q4W A;  3NVV B;  4BCA A;  2P13 A;  5AWV A;  1JRP A;  2W3R A;  1E8G A;  2VFU A;  2OAI A;  3TX1 A;  5FXE A; 
#chains in the Genus database with same CATH homology
 2Y4G A;  1UXY A;  5G5G B;  1WYG A;  3ETR B;  5AE1 A;  2IPI A;  4ML8 A;  5AE2 A;  1T3Q C;  3EUB 3;  3AMZ A;  4MLA A;  3S1F A;  4O95 A;  3NVW B;  2GQU A;  2QKN A;  5AE3 A;  2Y3S A;  4PWB A;  3TSJ A;  1W1S A;  3FW8 A;  2Q85 A;  1N63 C;  2GQT A;  2PLI A;  2O3G A;  2R8D A;  3C0P A;  3HRD C;  3D2D A;  2VFS A;  2W3S A;  3KJM A;  1DIQ A;  1W1O A;  2BVF A;  1JRO A;  1DII A;  1W1J A;  2R2Z A;  1E0Y A;  2BVG A;  4ZOH B;  2W55 A;  2Y08 A;  4PZF A;  1N5W C;  3B9J B;  1W1Q A;  1FFV C;  1I19 A;  3FW7 A;  3S1E A;  3RJ8 A;  1E8H A;  3GSY A;  3SR6 B;  4BBY A;  4BC9 A;  3W8W A;  3FW9 A;  5HMR A;  3NVY B;  2MBR A;  3NRZ B;  3S1D A;  3LLB A;  5ADZ A;  3BW7 A;  4DNS A;  3PQB A;  1WVE A;  5HHZ A;  1N62 C;  1W1M A;  1AHU A;  5HQX A;  5G5H B;  3W8X A;  1N60 C;  3DED A;  4HG0 A;  1RM6 B;  1AHV A;  1W1L A;  1WVF A;  2E3T A;  2EXR A;  4PYT A;  1HSK A;  1V97 A;  2YVS A;  2NQW A;  2UUU A;  3NS1 B;  1QLT A;  2RK5 A;  4OAL A;  2P3H A;  1VAO A;  3FWA A;  4JAY A;  2UUV A;  3D2J A;  4UD8 A;  1FO4 A;  1N61 C;  3VTE A;  2P4P A;  1QLU A;  2QPM A;  4PVJ A;  3RJA A;  4BC7 A;  1MBT A;  2VAO A;  1ZXI C;  1VDV A;  3JS8 A;  4JB1 A;  3D2H A;  5FXF A;  1FFU C;  2PLS A;  3DQ0 A;  3W8Z A;  1ZR6 A;  1MBB A;  1AHZ A;  3AN1 A;  1DZN A;  2AXR A;  2WDW A;  2W54 A;  3AM9 A;  5FXD A;  1W1R A;  2Y3R A;  3I99 A;  1F0X A;  3POP A;  4PVK A;  5L6G A;  5L6F A;  3LAE A;  3PM9 A;  4PVE A;  2VFV A;  2I0K A;  1E8F A;  3HSU A;  1SB3 B;  2BVH A;  2VFR A;  3TSH A;  3NVZ B;  5I1V A;  3S1C A;  1N5X A;  5FXP A;  5D79 A;  5I1W A;  4PVH A;  1W1K A;  1FIQ B;  4EC3 A;  4PWC A;  4XLO A;  5K8E A;  2VFT A;  2Q4W A;  3NVV B;  4BCA A;  2P13 A;  5AWV A;  1JRP A;  2W3R A;  1E8G A;  2VFU A;  2OAI A;  3TX1 A;  5FXE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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