5I1WA

Crystal structure of crmk, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TRAAVTVKPDDHRYDLLARADNYRFVAQPEYFRLPYSTAQVVEAVSEAVAAGKRLTVRSGGHCGEAFVASPDVDVIVDLSSMSHVGYDEERGAFEVEAGATVGQIYRVLYKNYGVTFPGGFCMGVGAGGHISGGGYGPLSRLLGLTVDYLHAVEVVVVDAEGVVSTVVATREEDDPNRDLWWAHTGGGGGNFGVITRYWLRSPDAVGDAPEEALPRPPASFHVARVSWSWAELTEADYVRLVSNFLDWQLRNCTVDSPNIGLYALLECFHRSAGHLAMHAQIPVDVPDAEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLRGPHTREQLAAAYRHLSRADYHCPSAAMEYIAYGGRVNTVDPAATAVPRGASLKTFYMVAWTDPDEDEEHLRWIREIYRDIHSATGGVPTPDEVNTGAYINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRNVFRHAFSIRPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords CrmK
publication title Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis
rcsb
source organism Actinoalloteichus sp. wh1-2216-6
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5i1wA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5i1wA02
2AXRA 2UUUA 4PVJA 3VTEA 3D2JA 4DNSA 2Y08A 4EC3A 5L6FA 4PVEA 3POPA 3TSJA 3FW9A 3TSHA 3D2DA 3FW7A 3HSUA 4PVKA 2Y4GA 5I1WA 5D79A 4UD8A 3PQBA 3FWAA 3RJ8A 3W8XA 2Y3RA 4PWCA 4PZFA 3W8WA 4PWBA 5AWVA 3RJAA 1ZR6A 4XLOA 3FW8A 5K8EA 2BVFA 5I1VA 3W8ZA 3D2HA 2WDWA 2UUVA 5L6GA 2BVHA 2BVGA 3GSYA 2Y3SA 2IPIA 4PVHA
chains in the Genus database with same CATH superfamily
1E8HA 1WYGA 1W1MA 3VTEA 3C0PA 1W1OA 2W3SA 3I99A 4EC3A 5L6FA 1N5XA 2QKNA 3AN1A 1E8FA 3TSHA 1FFUC 3FW7A 4PVKA 2Y4GA 4UD8A 4BC7A 4BC9A 1W1RA 3S1CA 2Y3RA 1E8GA 3W8WA 1AHVA 2P3HA 1JRPA 5AWVA 3NVZB 4JB1A 5ADZA 5AE1A 1N63C 1W1LA 2EXRA 2P4PA 2YVSA 3DEDA 3W8ZA 5AE2A 1DZNA 5FXFA 3GSYA 2Y3SA 1ZXIC 4PVHA 2VFUA 2UUUA 2OAIA 4BCAA 2W55A 5HHZA 1JROA 3TX1A 1W1JA 3D2JA 3NS1B 4ML8A 1W1QA 1I19A 5FXEA 1DIQA 3FW9A 4OALA 3D2DA 3NVVB 3HSUA 2VFSA 3AM9A 2QPMA 2W54A 3EUB3 3SR6B 3PQBA 1QLUA 2O3GA 1W1SA 2MBRA 3FWAA 4ZOHB 2Q85A 4PZFA 4JAYA 3LAEA 3S1EA 2PLIA 3NVWB 5FXPA 2PLSA 3LLBA 1WVEA 5K8EA 1V97A 1N5WC 1W1KA 2I0KA 2VFRA 5L6GA 2IPIA 3NVYB 4PWCA 3S1FA 3S1DA 3BW7A 2AXRA 1UXYA 4PVJA 4O95A 3NRZB 3PM9A 4PYTA 1MBBA 5G5HB 3TSJA 5I1WA 2E3TA 1F0XA 2R8DA 5FXDA 3W8XA 5HQXA 4PWBA 2VAOA 1AHZA 1ZR6A 1E0YA 3B9JB 3AMZA 5I1VA 1N62C 1DIIA 1VDVA 1N60C 2BVGA 1AHUA 2GQUA 4HG0A 1VAOA 3HRDC 2P13A 1FIQB 5HMRA 2NQWA 1SB3B 4DNSA 2Y08A 3KJMA 2W3RA 4PVEA 3POPA 2Q4WA 1N61C 3ETRB 5D79A 4BBYA 1HSKA 2GQTA 5AE3A 3RJ8A 1MBTA 2VFVA 1QLTA 2R2ZA 4MLAA 1T3QC 3RJAA 4XLOA 1FFVC 3FW8A 2BVFA 2VFTA 1WVFA 1FO4A 3JS8A 3D2HA 5G5GB 2WDWA 3DQ0A 2BVHA 2UUVA 2RK5A 1RM6B
chains in the Genus database with same CATH topology
1E8HA 1WYGA 1W1MA 3VTEA 3C0PA 1W1OA 2W3SA 3I99A 4EC3A 5L6FA 1N5XA 2QKNA 3AN1A 1E8FA 3TSHA 1FFUC 3FW7A 4PVKA 2Y4GA 4UD8A 4BC7A 4BC9A 1W1RA 3S1CA 2Y3RA 1E8GA 3W8WA 1AHVA 2P3HA 1JRPA 5AWVA 3NVZB 4JB1A 5ADZA 5AE1A 1N63C 1W1LA 2EXRA 2P4PA 2YVSA 3DEDA 3W8ZA 5AE2A 1DZNA 5FXFA 3GSYA 2Y3SA 1ZXIC 4PVHA 2VFUA 2UUUA 2OAIA 4BCAA 2W55A 5HHZA 1JROA 3TX1A 1W1JA 3D2JA 3NS1B 4ML8A 1W1QA 1I19A 5FXEA 1DIQA 3FW9A 4OALA 3D2DA 3NVVB 3HSUA 2VFSA 3AM9A 2QPMA 2W54A 3EUB3 3SR6B 3PQBA 1QLUA 2O3GA 1W1SA 2MBRA 3FWAA 4ZOHB 2Q85A 4PZFA 4JAYA 3LAEA 3S1EA 2PLIA 3NVWB 5FXPA 2PLSA 3LLBA 1WVEA 5K8EA 1V97A 1N5WC 1W1KA 2I0KA 2VFRA 5L6GA 2IPIA 3NVYB 4PWCA 3S1FA 3S1DA 3BW7A 2AXRA 1UXYA 4PVJA 4O95A 3NRZB 3PM9A 4PYTA 1MBBA 5G5HB 3TSJA 5I1WA 2E3TA 1F0XA 2R8DA 5FXDA 3W8XA 5HQXA 4PWBA 2VAOA 1AHZA 1ZR6A 1E0YA 3B9JB 3AMZA 5I1VA 1N62C 1DIIA 1VDVA 1N60C 2BVGA 1AHUA 2GQUA 4HG0A 1VAOA 3HRDC 2P13A 1FIQB 5HMRA 2NQWA 1SB3B 4DNSA 2Y08A 3KJMA 2W3RA 4PVEA 3POPA 2Q4WA 1N61C 3ETRB 5D79A 4BBYA 1HSKA 2GQTA 5AE3A 3RJ8A 1MBTA 2VFVA 1QLTA 2R2ZA 4MLAA 1T3QC 3RJAA 4XLOA 1FFVC 3FW8A 2BVFA 2VFTA 1WVFA 1FO4A 3JS8A 3D2HA 5G5GB 2WDWA 3DQ0A 2BVHA 2UUVA 2RK5A 1RM6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AXR A;  2UUU A;  4PVJ A;  3VTE A;  3D2J A;  4DNS A;  2Y08 A;  4EC3 A;  5L6F A;  4PVE A;  3POP A;  3TSJ A;  3FW9 A;  3TSH A;  3D2D A;  3FW7 A;  3HSU A;  4PVK A;  2Y4G A;  5I1W A;  5D79 A;  4UD8 A;  3PQB A;  3FWA A;  3RJ8 A;  3W8X A;  2Y3R A;  4PWC A;  4PZF A;  3W8W A;  4PWB A;  5AWV A;  3RJA A;  1ZR6 A;  4XLO A;  3FW8 A;  5K8E A;  2BVF A;  5I1V A;  3W8Z A;  3D2H A;  2WDW A;  2UUV A;  5L6G A;  2BVH A;  2BVG A;  3GSY A;  2Y3S A;  2IPI A;  4PVH A; 
#chains in the Genus database with same CATH topology
 1E8H A;  1WYG A;  1W1M A;  3VTE A;  3C0P A;  1W1O A;  2W3S A;  3I99 A;  4EC3 A;  5L6F A;  1N5X A;  2QKN A;  3AN1 A;  1E8F A;  3TSH A;  1FFU C;  3FW7 A;  4PVK A;  2Y4G A;  4UD8 A;  4BC7 A;  4BC9 A;  1W1R A;  3S1C A;  2Y3R A;  1E8G A;  3W8W A;  1AHV A;  2P3H A;  1JRP A;  5AWV A;  3NVZ B;  4JB1 A;  5ADZ A;  5AE1 A;  1N63 C;  1W1L A;  2EXR A;  2P4P A;  2YVS A;  3DED A;  3W8Z A;  5AE2 A;  1DZN A;  5FXF A;  3GSY A;  2Y3S A;  1ZXI C;  4PVH A;  2VFU A;  2UUU A;  2OAI A;  4BCA A;  2W55 A;  5HHZ A;  1JRO A;  3TX1 A;  1W1J A;  3D2J A;  3NS1 B;  4ML8 A;  1W1Q A;  1I19 A;  5FXE A;  1DIQ A;  3FW9 A;  4OAL A;  3D2D A;  3NVV B;  3HSU A;  2VFS A;  3AM9 A;  2QPM A;  2W54 A;  3EUB 3;  3SR6 B;  3PQB A;  1QLU A;  2O3G A;  1W1S A;  2MBR A;  3FWA A;  4ZOH B;  2Q85 A;  4PZF A;  4JAY A;  3LAE A;  3S1E A;  2PLI A;  3NVW B;  5FXP A;  2PLS A;  3LLB A;  1WVE A;  5K8E A;  1V97 A;  1N5W C;  1W1K A;  2I0K A;  2VFR A;  5L6G A;  2IPI A;  3NVY B;  4PWC A;  3S1F A;  3S1D A;  3BW7 A;  2AXR A;  1UXY A;  4PVJ A;  4O95 A;  3NRZ B;  3PM9 A;  4PYT A;  1MBB A;  5G5H B;  3TSJ A;  5I1W A;  2E3T A;  1F0X A;  2R8D A;  5FXD A;  3W8X A;  5HQX A;  4PWB A;  2VAO A;  1AHZ A;  1ZR6 A;  1E0Y A;  3B9J B;  3AMZ A;  5I1V A;  1N62 C;  1DII A;  1VDV A;  1N60 C;  2BVG A;  1AHU A;  2GQU A;  4HG0 A;  1VAO A;  3HRD C;  2P13 A;  1FIQ B;  5HMR A;  2NQW A;  1SB3 B;  4DNS A;  2Y08 A;  3KJM A;  2W3R A;  4PVE A;  3POP A;  2Q4W A;  1N61 C;  3ETR B;  5D79 A;  4BBY A;  1HSK A;  2GQT A;  5AE3 A;  3RJ8 A;  1MBT A;  2VFV A;  1QLT A;  2R2Z A;  4MLA A;  1T3Q C;  3RJA A;  4XLO A;  1FFV C;  3FW8 A;  2BVF A;  2VFT A;  1WVF A;  1FO4 A;  3JS8 A;  3D2H A;  5G5G B;  2WDW A;  3DQ0 A;  2BVH A;  2UUV A;  2RK5 A;  1RM6 B; 
#chains in the Genus database with same CATH homology
 1E8H A;  1WYG A;  1W1M A;  3VTE A;  3C0P A;  1W1O A;  2W3S A;  3I99 A;  4EC3 A;  5L6F A;  1N5X A;  2QKN A;  3AN1 A;  1E8F A;  3TSH A;  1FFU C;  3FW7 A;  4PVK A;  2Y4G A;  4UD8 A;  4BC7 A;  4BC9 A;  1W1R A;  3S1C A;  2Y3R A;  1E8G A;  3W8W A;  1AHV A;  2P3H A;  1JRP A;  5AWV A;  3NVZ B;  4JB1 A;  5ADZ A;  5AE1 A;  1N63 C;  1W1L A;  2EXR A;  2P4P A;  2YVS A;  3DED A;  3W8Z A;  5AE2 A;  1DZN A;  5FXF A;  3GSY A;  2Y3S A;  1ZXI C;  4PVH A;  2VFU A;  2UUU A;  2OAI A;  4BCA A;  2W55 A;  5HHZ A;  1JRO A;  3TX1 A;  1W1J A;  3D2J A;  3NS1 B;  4ML8 A;  1W1Q A;  1I19 A;  5FXE A;  1DIQ A;  3FW9 A;  4OAL A;  3D2D A;  3NVV B;  3HSU A;  2VFS A;  3AM9 A;  2QPM A;  2W54 A;  3EUB 3;  3SR6 B;  3PQB A;  1QLU A;  2O3G A;  1W1S A;  2MBR A;  3FWA A;  4ZOH B;  2Q85 A;  4PZF A;  4JAY A;  3LAE A;  3S1E A;  2PLI A;  3NVW B;  5FXP A;  2PLS A;  3LLB A;  1WVE A;  5K8E A;  1V97 A;  1N5W C;  1W1K A;  2I0K A;  2VFR A;  5L6G A;  2IPI A;  3NVY B;  4PWC A;  3S1F A;  3S1D A;  3BW7 A;  2AXR A;  1UXY A;  4PVJ A;  4O95 A;  3NRZ B;  3PM9 A;  4PYT A;  1MBB A;  5G5H B;  3TSJ A;  5I1W A;  2E3T A;  1F0X A;  2R8D A;  5FXD A;  3W8X A;  5HQX A;  4PWB A;  2VAO A;  1AHZ A;  1ZR6 A;  1E0Y A;  3B9J B;  3AMZ A;  5I1V A;  1N62 C;  1DII A;  1VDV A;  1N60 C;  2BVG A;  1AHU A;  2GQU A;  4HG0 A;  1VAO A;  3HRD C;  2P13 A;  1FIQ B;  5HMR A;  2NQW A;  1SB3 B;  4DNS A;  2Y08 A;  3KJM A;  2W3R A;  4PVE A;  3POP A;  2Q4W A;  1N61 C;  3ETR B;  5D79 A;  4BBY A;  1HSK A;  2GQT A;  5AE3 A;  3RJ8 A;  1MBT A;  2VFV A;  1QLT A;  2R2Z A;  4MLA A;  1T3Q C;  3RJA A;  4XLO A;  1FFV C;  3FW8 A;  2BVF A;  2VFT A;  1WVF A;  1FO4 A;  3JS8 A;  3D2H A;  5G5G B;  2WDW A;  3DQ0 A;  2BVH A;  2UUV A;  2RK5 A;  1RM6 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...