5I1WA

Crystal structure of crmk, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TRAAVTVKPDDHRYDLLARADNYRFVAQPEYFRLPYSTAQVVEAVSEAVAAGKRLTVRSGGHCGEAFVASPDVDVIVDLSSMSHVGYDEERGAFEVEAGATVGQIYRVLYKNYGVTFPGGFCMGVGAGGHISGGGYGPLSRLLGLTVDYLHAVEVVVVDAEGVVSTVVATREEDDPNRDLWWAHTGGGGGNFGVITRYWLRSPDAVGDAPEEALPRPPASFHVARVSWSWAELTEADYVRLVSNFLDWQLRNCTVDSPNIGLYALLECFHRSAGHLAMHAQIPVDVPDAEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLRGPHTREQLAAAYRHLSRADYHCPSAAMEYIAYGGRVNTVDPAATAVPRGASLKTFYMVAWTDPDEDEEHLRWIREIYRDIHSATGGVPTPDEVNTGAYINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRNVFRHAFSIRPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CrmK
publication title Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis
rcsb
source organism Actinoalloteichus sp. wh1-2216-6
molecule tags Oxidoreductase
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5i1wA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5i1wA02
3RJ8A 3FW8A 2Y4GA 3GSYA 2Y3SA 1ZR6A 4PVJA 2Y3RA 3FW9A 3PQBA 2UUUA 5AWVA 5K8EA 3TSJA 2Y08A 2WDWA 2BVHA 3D2DA 5I1VA 2AXRA 3RJAA 4PZFA 4XLOA 2UUVA 3W8ZA 3D2JA 2BVFA 3FW7A 4PVEA 3W8XA 4EC3A 4DNSA 2IPIA 3VTEA 5D79A 3D2HA 4PVKA 4UD8A 2BVGA 5I1WA 4PWCA 3TSHA 5L6FA 5L6GA 3W8WA 3FWAA 3POPA 4PVHA 4PWBA 3HSUA
chains in the Genus database with same CATH superfamily
2QKNA 3S1DA 2I0KA 2P13A 3GSYA 2Y3SA 3B9JB 1FFVC 4PVHA 3FW9A 2UUUA 3BW7A 1UXYA 1VAOA 1I19A 3ETRB 1E0YA 2BVHA 3D2DA 5G5HB 3LAEA 3S1EA 2W3RA 4BC7A 5HQXA 1W1JA 3AMZA 1W1QA 1N62C 2BVFA 3DQ0A 2RK5A 5FXDA 2W55A 1JRPA 2IPIA 5AE3A 1VDVA 3D2HA 5I1WA 1W1OA 3TSHA 5L6GA 1HSKA 1E8GA 2P3HA 1AHZA 2GQUA 1JROA 1N5WC 3NVZB 5FXPA 1QLUA 4HG0A 3EUB3 1ZR6A 2VFTA 4PVJA 2R2ZA 3NS1B 1MBBA 1WVFA 5I1VA 4XLOA 3RJAA 1FFUC 4JB1A 2Q4WA 3JS8A 4OALA 2NQWA 2VFUA 3D2JA 3PM9A 5G5GB 4PVEA 2PLSA 5FXFA 4BBYA 4EC3A 2VAOA 1E8FA 3VTEA 1AHUA 5HMRA 4PVKA 4BC9A 3DEDA 5AE2A 3W8WA 1FO4A 3POPA 3NVVB 4PWBA 3RJ8A 3FW8A 2Y4GA 5FXEA 2OAIA 2P4PA 3S1FA 5AE1A 5AWVA 3TSJA 2WDWA 4PZFA 1MBTA 3SR6B 2UUVA 1W1MA 3W8ZA 1W1LA 1DIIA 1WVEA 3AM9A 1N60C 1V97A 1FIQB 2E3TA 2PLIA 3FW7A 3HRDC 1QLTA 2W54A 3C0PA 1E8HA 4UD8A 2YVSA 2VFVA 4ZOHB 3FWAA 1N5XA 1W1RA 2VFRA 4PYTA 3S1CA 1RM6B 3NVWB 2R8DA 1DZNA 3NRZB 2Y3RA 3PQBA 1N61C 5K8EA 1ZXIC 2Y08A 1SB3B 2AXRA 3KJMA 2VFSA 1W1KA 2W3SA 3I99A 4O95A 2QPMA 1F0XA 4JAYA 1N63C 3NVYB 2O3GA 2EXRA 2Q85A 3TX1A 4BCAA 3W8XA 5ADZA 2GQTA 4DNSA 4ML8A 5D79A 5HHZA 1T3QC 2BVGA 2MBRA 3LLBA 4PWCA 1WYGA 5L6FA 3AN1A 4MLAA 1W1SA 1AHVA 1DIQA 3HSUA
chains in the Genus database with same CATH topology
2QKNA 3S1DA 2I0KA 2P13A 3GSYA 2Y3SA 3B9JB 1FFVC 4PVHA 3FW9A 2UUUA 3BW7A 1UXYA 1VAOA 1I19A 3ETRB 1E0YA 2BVHA 3D2DA 5G5HB 3LAEA 3S1EA 2W3RA 4BC7A 5HQXA 1W1JA 3AMZA 1W1QA 1N62C 2BVFA 3DQ0A 2RK5A 5FXDA 2W55A 1JRPA 2IPIA 5AE3A 1VDVA 3D2HA 5I1WA 1W1OA 3TSHA 5L6GA 1HSKA 1E8GA 2P3HA 1AHZA 2GQUA 1JROA 1N5WC 3NVZB 5FXPA 1QLUA 4HG0A 3EUB3 1ZR6A 2VFTA 4PVJA 2R2ZA 3NS1B 1MBBA 1WVFA 5I1VA 4XLOA 3RJAA 1FFUC 4JB1A 2Q4WA 3JS8A 4OALA 2NQWA 2VFUA 3D2JA 3PM9A 5G5GB 4PVEA 2PLSA 5FXFA 4BBYA 4EC3A 2VAOA 1E8FA 3VTEA 1AHUA 5HMRA 4PVKA 4BC9A 3DEDA 5AE2A 3W8WA 1FO4A 3POPA 3NVVB 4PWBA 3RJ8A 3FW8A 2Y4GA 5FXEA 2OAIA 2P4PA 3S1FA 5AE1A 5AWVA 3TSJA 2WDWA 4PZFA 1MBTA 3SR6B 2UUVA 1W1MA 3W8ZA 1W1LA 1DIIA 1WVEA 3AM9A 1N60C 1V97A 1FIQB 2E3TA 2PLIA 3FW7A 3HRDC 1QLTA 2W54A 3C0PA 1E8HA 4UD8A 2YVSA 2VFVA 4ZOHB 3FWAA 1N5XA 1W1RA 2VFRA 4PYTA 3S1CA 1RM6B 3NVWB 2R8DA 1DZNA 3NRZB 2Y3RA 3PQBA 1N61C 5K8EA 1ZXIC 2Y08A 1SB3B 2AXRA 3KJMA 2VFSA 1W1KA 2W3SA 3I99A 4O95A 2QPMA 1F0XA 4JAYA 1N63C 3NVYB 2O3GA 2EXRA 2Q85A 3TX1A 4BCAA 3W8XA 5ADZA 2GQTA 4DNSA 4ML8A 5D79A 5HHZA 1T3QC 2BVGA 2MBRA 3LLBA 4PWCA 1WYGA 5L6FA 3AN1A 4MLAA 1W1SA 1AHVA 1DIQA 3HSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJ8 A;  3FW8 A;  2Y4G A;  3GSY A;  2Y3S A;  1ZR6 A;  4PVJ A;  2Y3R A;  3FW9 A;  3PQB A;  2UUU A;  5AWV A;  5K8E A;  3TSJ A;  2Y08 A;  2WDW A;  2BVH A;  3D2D A;  5I1V A;  2AXR A;  3RJA A;  4PZF A;  4XLO A;  2UUV A;  3W8Z A;  3D2J A;  2BVF A;  3FW7 A;  4PVE A;  3W8X A;  4EC3 A;  4DNS A;  2IPI A;  3VTE A;  5D79 A;  3D2H A;  4PVK A;  4UD8 A;  2BVG A;  5I1W A;  4PWC A;  3TSH A;  5L6F A;  5L6G A;  3W8W A;  3FWA A;  3POP A;  4PVH A;  4PWB A;  3HSU A; 
#chains in the Genus database with same CATH topology
 2QKN A;  3S1D A;  2I0K A;  2P13 A;  3GSY A;  2Y3S A;  3B9J B;  1FFV C;  4PVH A;  3FW9 A;  2UUU A;  3BW7 A;  1UXY A;  1VAO A;  1I19 A;  3ETR B;  1E0Y A;  2BVH A;  3D2D A;  5G5H B;  3LAE A;  3S1E A;  2W3R A;  4BC7 A;  5HQX A;  1W1J A;  3AMZ A;  1W1Q A;  1N62 C;  2BVF A;  3DQ0 A;  2RK5 A;  5FXD A;  2W55 A;  1JRP A;  2IPI A;  5AE3 A;  1VDV A;  3D2H A;  5I1W A;  1W1O A;  3TSH A;  5L6G A;  1HSK A;  1E8G A;  2P3H A;  1AHZ A;  2GQU A;  1JRO A;  1N5W C;  3NVZ B;  5FXP A;  1QLU A;  4HG0 A;  3EUB 3;  1ZR6 A;  2VFT A;  4PVJ A;  2R2Z A;  3NS1 B;  1MBB A;  1WVF A;  5I1V A;  4XLO A;  3RJA A;  1FFU C;  4JB1 A;  2Q4W A;  3JS8 A;  4OAL A;  2NQW A;  2VFU A;  3D2J A;  3PM9 A;  5G5G B;  4PVE A;  2PLS A;  5FXF A;  4BBY A;  4EC3 A;  2VAO A;  1E8F A;  3VTE A;  1AHU A;  5HMR A;  4PVK A;  4BC9 A;  3DED A;  5AE2 A;  3W8W A;  1FO4 A;  3POP A;  3NVV B;  4PWB A;  3RJ8 A;  3FW8 A;  2Y4G A;  5FXE A;  2OAI A;  2P4P A;  3S1F A;  5AE1 A;  5AWV A;  3TSJ A;  2WDW A;  4PZF A;  1MBT A;  3SR6 B;  2UUV A;  1W1M A;  3W8Z A;  1W1L A;  1DII A;  1WVE A;  3AM9 A;  1N60 C;  1V97 A;  1FIQ B;  2E3T A;  2PLI A;  3FW7 A;  3HRD C;  1QLT A;  2W54 A;  3C0P A;  1E8H A;  4UD8 A;  2YVS A;  2VFV A;  4ZOH B;  3FWA A;  1N5X A;  1W1R A;  2VFR A;  4PYT A;  3S1C A;  1RM6 B;  3NVW B;  2R8D A;  1DZN A;  3NRZ B;  2Y3R A;  3PQB A;  1N61 C;  5K8E A;  1ZXI C;  2Y08 A;  1SB3 B;  2AXR A;  3KJM A;  2VFS A;  1W1K A;  2W3S A;  3I99 A;  4O95 A;  2QPM A;  1F0X A;  4JAY A;  1N63 C;  3NVY B;  2O3G A;  2EXR A;  2Q85 A;  3TX1 A;  4BCA A;  3W8X A;  5ADZ A;  2GQT A;  4DNS A;  4ML8 A;  5D79 A;  5HHZ A;  1T3Q C;  2BVG A;  2MBR A;  3LLB A;  4PWC A;  1WYG A;  5L6F A;  3AN1 A;  4MLA A;  1W1S A;  1AHV A;  1DIQ A;  3HSU A; 
#chains in the Genus database with same CATH homology
 2QKN A;  3S1D A;  2I0K A;  2P13 A;  3GSY A;  2Y3S A;  3B9J B;  1FFV C;  4PVH A;  3FW9 A;  2UUU A;  3BW7 A;  1UXY A;  1VAO A;  1I19 A;  3ETR B;  1E0Y A;  2BVH A;  3D2D A;  5G5H B;  3LAE A;  3S1E A;  2W3R A;  4BC7 A;  5HQX A;  1W1J A;  3AMZ A;  1W1Q A;  1N62 C;  2BVF A;  3DQ0 A;  2RK5 A;  5FXD A;  2W55 A;  1JRP A;  2IPI A;  5AE3 A;  1VDV A;  3D2H A;  5I1W A;  1W1O A;  3TSH A;  5L6G A;  1HSK A;  1E8G A;  2P3H A;  1AHZ A;  2GQU A;  1JRO A;  1N5W C;  3NVZ B;  5FXP A;  1QLU A;  4HG0 A;  3EUB 3;  1ZR6 A;  2VFT A;  4PVJ A;  2R2Z A;  3NS1 B;  1MBB A;  1WVF A;  5I1V A;  4XLO A;  3RJA A;  1FFU C;  4JB1 A;  2Q4W A;  3JS8 A;  4OAL A;  2NQW A;  2VFU A;  3D2J A;  3PM9 A;  5G5G B;  4PVE A;  2PLS A;  5FXF A;  4BBY A;  4EC3 A;  2VAO A;  1E8F A;  3VTE A;  1AHU A;  5HMR A;  4PVK A;  4BC9 A;  3DED A;  5AE2 A;  3W8W A;  1FO4 A;  3POP A;  3NVV B;  4PWB A;  3RJ8 A;  3FW8 A;  2Y4G A;  5FXE A;  2OAI A;  2P4P A;  3S1F A;  5AE1 A;  5AWV A;  3TSJ A;  2WDW A;  4PZF A;  1MBT A;  3SR6 B;  2UUV A;  1W1M A;  3W8Z A;  1W1L A;  1DII A;  1WVE A;  3AM9 A;  1N60 C;  1V97 A;  1FIQ B;  2E3T A;  2PLI A;  3FW7 A;  3HRD C;  1QLT A;  2W54 A;  3C0P A;  1E8H A;  4UD8 A;  2YVS A;  2VFV A;  4ZOH B;  3FWA A;  1N5X A;  1W1R A;  2VFR A;  4PYT A;  3S1C A;  1RM6 B;  3NVW B;  2R8D A;  1DZN A;  3NRZ B;  2Y3R A;  3PQB A;  1N61 C;  5K8E A;  1ZXI C;  2Y08 A;  1SB3 B;  2AXR A;  3KJM A;  2VFS A;  1W1K A;  2W3S A;  3I99 A;  4O95 A;  2QPM A;  1F0X A;  4JAY A;  1N63 C;  3NVY B;  2O3G A;  2EXR A;  2Q85 A;  3TX1 A;  4BCA A;  3W8X A;  5ADZ A;  2GQT A;  4DNS A;  4ML8 A;  5D79 A;  5HHZ A;  1T3Q C;  2BVG A;  2MBR A;  3LLB A;  4PWC A;  1WYG A;  5L6F A;  3AN1 A;  4MLA A;  1W1S A;  1AHV A;  1DIQ A;  3HSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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