5I1WA

Crystal structure of crmk, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TRAAVTVKPDDHRYDLLARADNYRFVAQPEYFRLPYSTAQVVEAVSEAVAAGKRLTVRSGGHCGEAFVASPDVDVIVDLSSMSHVGYDEERGAFEVEAGATVGQIYRVLYKNYGVTFPGGFCMGVGAGGHISGGGYGPLSRLLGLTVDYLHAVEVVVVDAEGVVSTVVATREEDDPNRDLWWAHTGGGGGNFGVITRYWLRSPDAVGDAPEEALPRPPASFHVARVSWSWAELTEADYVRLVSNFLDWQLRNCTVDSPNIGLYALLECFHRSAGHLAMHAQIPVDVPDAEERMSWFLAELNEGVAVAPSLTRRRLPWLATSQLLAIPDVGPGAIGVRRKVKSADLRGPHTREQLAAAYRHLSRADYHCPSAAMEYIAYGGRVNTVDPAATAVPRGASLKTFYMVAWTDPDEDEEHLRWIREIYRDIHSATGGVPTPDEVNTGAYINYPDIDLADPEWNTSGVPWHTIYYGDNYPRLQEIKSRWDPRNVFRHAFSIRPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords CrmK
publication title Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis
rcsb
source organism Actinoalloteichus sp. wh1-2216-6
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5i1wA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5i1wA02
5AWVA 1ZR6A 3D2DA 5I1VA 4PZFA 4PWCA 2Y4GA 2Y3RA 2BVFA 3FWAA 5L6GA 4PVHA 3D2HA 4PVKA 2Y08A 2WDWA 5D79A 3W8WA 3GSYA 3RJAA 3D2JA 3W8ZA 3TSJA 4DNSA 4EC3A 2IPIA 5K8EA 3PQBA 3FW9A 3W8XA 2UUUA 2BVGA 4UD8A 3TSHA 4PWBA 3FW8A 2AXRA 3VTEA 5I1WA 2BVHA 2UUVA 3FW7A 3HSUA 4PVJA 2Y3SA 4PVEA 4XLOA 3POPA 3RJ8A 5L6FA
chains in the Genus database with same CATH superfamily
3D2DA 5I1VA 1AHVA 1F0XA 3JS8A 5G5GB 1QLTA 3S1DA 3FWAA 5L6GA 1N63C 1VDVA 2WDWA 3NS1B 3S1FA 2VFRA 1E8HA 3GSYA 1RM6B 2VFSA 1I19A 3EUB3 3RJAA 3PM9A 4HG0A 5K8EA 1FFUC 2UUUA 2R8DA 3DQ0A 3AN1A 2W55A 1W1OA 1E8GA 4ML8A 4PYTA 2UUVA 5FXFA 1W1MA 2QPMA 3HSUA 1VAOA 3POPA 1JRPA 3NRZB 5L6FA 2EXRA 2GQTA 4BCAA 1ZR6A 4PZFA 1AHUA 1N62C 4BC7A 5AE1A 1N60C 3NVWB 2BVFA 3NVVB 1ZXIC 2NQWA 3NVYB 1N5WC 3D2HA 4PVKA 4PVHA 2Y08A 5D79A 3W8WA 1HSKA 2I0KA 4EC3A 1UXYA 4BBYA 1WYGA 1V97A 1JROA 2VFTA 1QLUA 5HMRA 4O95A 1MBTA 1N61C 4UD8A 3TSHA 1FFVC 2AXRA 3I99A 2BVHA 1T3QC 2W54A 5FXPA 3DEDA 3FW7A 2MBRA 2Y3SA 5HHZA 1W1JA 5FXEA 2PLIA 3RJ8A 2Y3RA 2RK5A 1WVFA 3SR6B 2O3GA 5AWVA 5ADZA 1FIQB 4PWCA 2VFVA 1DZNA 1FO4A 4OALA 3LLBA 1DIQA 3TX1A 2GQUA 5G5HB 3D2JA 3W8ZA 1W1KA 2P13A 3TSJA 4DNSA 2IPIA 3NVZB 3C0PA 3ETRB 3HRDC 1W1SA 2BVGA 1DIIA 5FXDA 4ZOHB 3S1CA 1W1RA 4PWBA 3FW8A 2P3HA 2R2ZA 1W1QA 2PLSA 4MLAA 5HQXA 2YVSA 3B9JB 2E3TA 1W1LA 4PVJA 4PVEA 4XLOA 3LAEA 3AMZA 3KJMA 4JAYA 1E8FA 1E0YA 1SB3B 2OAIA 2Q85A 2VAOA 2Q4WA 2VFUA 2Y4GA 4BC9A 2W3RA 3AM9A 1N5XA 2P4PA 2W3SA 5AE2A 3BW7A 3PQBA 3FW9A 1MBBA 2QKNA 1AHZA 4JB1A 3W8XA 3VTEA 5I1WA 3S1EA 1WVEA 5AE3A
chains in the Genus database with same CATH topology
3D2DA 5I1VA 1AHVA 1F0XA 3JS8A 5G5GB 1QLTA 3S1DA 3FWAA 5L6GA 1N63C 1VDVA 2WDWA 3NS1B 3S1FA 2VFRA 1E8HA 3GSYA 1RM6B 2VFSA 1I19A 3EUB3 3RJAA 3PM9A 4HG0A 5K8EA 1FFUC 2UUUA 2R8DA 3DQ0A 3AN1A 2W55A 1W1OA 1E8GA 4ML8A 4PYTA 2UUVA 5FXFA 1W1MA 2QPMA 3HSUA 1VAOA 3POPA 1JRPA 3NRZB 5L6FA 2EXRA 2GQTA 4BCAA 1ZR6A 4PZFA 1AHUA 1N62C 4BC7A 5AE1A 1N60C 3NVWB 2BVFA 3NVVB 1ZXIC 2NQWA 3NVYB 1N5WC 3D2HA 4PVKA 4PVHA 2Y08A 5D79A 3W8WA 1HSKA 2I0KA 4EC3A 1UXYA 4BBYA 1WYGA 1V97A 1JROA 2VFTA 1QLUA 5HMRA 4O95A 1MBTA 1N61C 4UD8A 3TSHA 1FFVC 2AXRA 3I99A 2BVHA 1T3QC 2W54A 5FXPA 3DEDA 3FW7A 2MBRA 2Y3SA 5HHZA 1W1JA 5FXEA 2PLIA 3RJ8A 2Y3RA 2RK5A 1WVFA 3SR6B 2O3GA 5AWVA 5ADZA 1FIQB 4PWCA 2VFVA 1DZNA 1FO4A 4OALA 3LLBA 1DIQA 3TX1A 2GQUA 5G5HB 3D2JA 3W8ZA 1W1KA 2P13A 3TSJA 4DNSA 2IPIA 3NVZB 3C0PA 3ETRB 3HRDC 1W1SA 2BVGA 1DIIA 5FXDA 4ZOHB 3S1CA 1W1RA 4PWBA 3FW8A 2P3HA 2R2ZA 1W1QA 2PLSA 4MLAA 5HQXA 2YVSA 3B9JB 2E3TA 1W1LA 4PVJA 4PVEA 4XLOA 3LAEA 3AMZA 3KJMA 4JAYA 1E8FA 1E0YA 1SB3B 2OAIA 2Q85A 2VAOA 2Q4WA 2VFUA 2Y4GA 4BC9A 2W3RA 3AM9A 1N5XA 2P4PA 2W3SA 5AE2A 3BW7A 3PQBA 3FW9A 1MBBA 2QKNA 1AHZA 4JB1A 3W8XA 3VTEA 5I1WA 3S1EA 1WVEA 5AE3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AWV A;  1ZR6 A;  3D2D A;  5I1V A;  4PZF A;  4PWC A;  2Y4G A;  2Y3R A;  2BVF A;  3FWA A;  5L6G A;  4PVH A;  3D2H A;  4PVK A;  2Y08 A;  2WDW A;  5D79 A;  3W8W A;  3GSY A;  3RJA A;  3D2J A;  3W8Z A;  3TSJ A;  4DNS A;  4EC3 A;  2IPI A;  5K8E A;  3PQB A;  3FW9 A;  3W8X A;  2UUU A;  2BVG A;  4UD8 A;  3TSH A;  4PWB A;  3FW8 A;  2AXR A;  3VTE A;  5I1W A;  2BVH A;  2UUV A;  3FW7 A;  3HSU A;  4PVJ A;  2Y3S A;  4PVE A;  4XLO A;  3POP A;  3RJ8 A;  5L6F A; 
#chains in the Genus database with same CATH topology
 3D2D A;  5I1V A;  1AHV A;  1F0X A;  3JS8 A;  5G5G B;  1QLT A;  3S1D A;  3FWA A;  5L6G A;  1N63 C;  1VDV A;  2WDW A;  3NS1 B;  3S1F A;  2VFR A;  1E8H A;  3GSY A;  1RM6 B;  2VFS A;  1I19 A;  3EUB 3;  3RJA A;  3PM9 A;  4HG0 A;  5K8E A;  1FFU C;  2UUU A;  2R8D A;  3DQ0 A;  3AN1 A;  2W55 A;  1W1O A;  1E8G A;  4ML8 A;  4PYT A;  2UUV A;  5FXF A;  1W1M A;  2QPM A;  3HSU A;  1VAO A;  3POP A;  1JRP A;  3NRZ B;  5L6F A;  2EXR A;  2GQT A;  4BCA A;  1ZR6 A;  4PZF A;  1AHU A;  1N62 C;  4BC7 A;  5AE1 A;  1N60 C;  3NVW B;  2BVF A;  3NVV B;  1ZXI C;  2NQW A;  3NVY B;  1N5W C;  3D2H A;  4PVK A;  4PVH A;  2Y08 A;  5D79 A;  3W8W A;  1HSK A;  2I0K A;  4EC3 A;  1UXY A;  4BBY A;  1WYG A;  1V97 A;  1JRO A;  2VFT A;  1QLU A;  5HMR A;  4O95 A;  1MBT A;  1N61 C;  4UD8 A;  3TSH A;  1FFV C;  2AXR A;  3I99 A;  2BVH A;  1T3Q C;  2W54 A;  5FXP A;  3DED A;  3FW7 A;  2MBR A;  2Y3S A;  5HHZ A;  1W1J A;  5FXE A;  2PLI A;  3RJ8 A;  2Y3R A;  2RK5 A;  1WVF A;  3SR6 B;  2O3G A;  5AWV A;  5ADZ A;  1FIQ B;  4PWC A;  2VFV A;  1DZN A;  1FO4 A;  4OAL A;  3LLB A;  1DIQ A;  3TX1 A;  2GQU A;  5G5H B;  3D2J A;  3W8Z A;  1W1K A;  2P13 A;  3TSJ A;  4DNS A;  2IPI A;  3NVZ B;  3C0P A;  3ETR B;  3HRD C;  1W1S A;  2BVG A;  1DII A;  5FXD A;  4ZOH B;  3S1C A;  1W1R A;  4PWB A;  3FW8 A;  2P3H A;  2R2Z A;  1W1Q A;  2PLS A;  4MLA A;  5HQX A;  2YVS A;  3B9J B;  2E3T A;  1W1L A;  4PVJ A;  4PVE A;  4XLO A;  3LAE A;  3AMZ A;  3KJM A;  4JAY A;  1E8F A;  1E0Y A;  1SB3 B;  2OAI A;  2Q85 A;  2VAO A;  2Q4W A;  2VFU A;  2Y4G A;  4BC9 A;  2W3R A;  3AM9 A;  1N5X A;  2P4P A;  2W3S A;  5AE2 A;  3BW7 A;  3PQB A;  3FW9 A;  1MBB A;  2QKN A;  1AHZ A;  4JB1 A;  3W8X A;  3VTE A;  5I1W A;  3S1E A;  1WVE A;  5AE3 A; 
#chains in the Genus database with same CATH homology
 3D2D A;  5I1V A;  1AHV A;  1F0X A;  3JS8 A;  5G5G B;  1QLT A;  3S1D A;  3FWA A;  5L6G A;  1N63 C;  1VDV A;  2WDW A;  3NS1 B;  3S1F A;  2VFR A;  1E8H A;  3GSY A;  1RM6 B;  2VFS A;  1I19 A;  3EUB 3;  3RJA A;  3PM9 A;  4HG0 A;  5K8E A;  1FFU C;  2UUU A;  2R8D A;  3DQ0 A;  3AN1 A;  2W55 A;  1W1O A;  1E8G A;  4ML8 A;  4PYT A;  2UUV A;  5FXF A;  1W1M A;  2QPM A;  3HSU A;  1VAO A;  3POP A;  1JRP A;  3NRZ B;  5L6F A;  2EXR A;  2GQT A;  4BCA A;  1ZR6 A;  4PZF A;  1AHU A;  1N62 C;  4BC7 A;  5AE1 A;  1N60 C;  3NVW B;  2BVF A;  3NVV B;  1ZXI C;  2NQW A;  3NVY B;  1N5W C;  3D2H A;  4PVK A;  4PVH A;  2Y08 A;  5D79 A;  3W8W A;  1HSK A;  2I0K A;  4EC3 A;  1UXY A;  4BBY A;  1WYG A;  1V97 A;  1JRO A;  2VFT A;  1QLU A;  5HMR A;  4O95 A;  1MBT A;  1N61 C;  4UD8 A;  3TSH A;  1FFV C;  2AXR A;  3I99 A;  2BVH A;  1T3Q C;  2W54 A;  5FXP A;  3DED A;  3FW7 A;  2MBR A;  2Y3S A;  5HHZ A;  1W1J A;  5FXE A;  2PLI A;  3RJ8 A;  2Y3R A;  2RK5 A;  1WVF A;  3SR6 B;  2O3G A;  5AWV A;  5ADZ A;  1FIQ B;  4PWC A;  2VFV A;  1DZN A;  1FO4 A;  4OAL A;  3LLB A;  1DIQ A;  3TX1 A;  2GQU A;  5G5H B;  3D2J A;  3W8Z A;  1W1K A;  2P13 A;  3TSJ A;  4DNS A;  2IPI A;  3NVZ B;  3C0P A;  3ETR B;  3HRD C;  1W1S A;  2BVG A;  1DII A;  5FXD A;  4ZOH B;  3S1C A;  1W1R A;  4PWB A;  3FW8 A;  2P3H A;  2R2Z A;  1W1Q A;  2PLS A;  4MLA A;  5HQX A;  2YVS A;  3B9J B;  2E3T A;  1W1L A;  4PVJ A;  4PVE A;  4XLO A;  3LAE A;  3AMZ A;  3KJM A;  4JAY A;  1E8F A;  1E0Y A;  1SB3 B;  2OAI A;  2Q85 A;  2VAO A;  2Q4W A;  2VFU A;  2Y4G A;  4BC9 A;  2W3R A;  3AM9 A;  1N5X A;  2P4P A;  2W3S A;  5AE2 A;  3BW7 A;  3PQB A;  3FW9 A;  1MBB A;  2QKN A;  1AHZ A;  4JB1 A;  3W8X A;  3VTE A;  5I1W A;  3S1E A;  1WVE A;  5AE3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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