1W1MA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase: glu502gly mutant
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGGYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Laboratory-Evolved Vanillyl-Alcohol Oxidase Produces Natural Vanillin
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 172
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2004-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1w1mA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1mA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1mA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1mA03
3PM9A 1DIQA 5AE3A 1DZNA 4EC3A 3NVVB 2BVFA 1E8GA 1WVEA 2VAOA 5D79A 1DIIA 3D2DA 3GSYA 3D2JA 4O95A 2E3TA 5G5HB 5FXEA 3NVZB 4JAYA 3NVYB 4PVKA 4ML8A 1W1MA 2VFRA 1N62C 3D2HA 3I99A 4PWBA 3AN1A 2VFVA 3C0PA 2Q4WA 1SB3B 3NRZB 1AHUA 2P13A 3TSJA 4PWCA 1ZR6A 1JRPA 3ETRB 3W8WA 1MBBA 4PVEA 3S1FA 4HG0A 2YVSA 1N60C 4BBYA 3W8ZA 1VDVA 3NS1B 3LAEA 1W1KA 1WVFA 3TSHA 1E8HA 1N63C 3VTEA 4ZOHB 4JB1A 2W3RA 4MLAA 3SR6B 3AMZA 3NVWB 2BVHA 2W54A 2QPMA 1W1OA 1RM6B 1N5WC 3KJMA 4PZFA 1WYGA 2MBRA 1HSKA 3TX1A 4PYTA 4PVJA 1QLUA 1W1JA 3S1CA 2W3SA 4PVHA 5ADZA 4OALA 3HRDC 5HHZA 5G5GB 5HQXA 2QKNA 3B9JB 5FXFA 2P4PA 1AHZA 2RK5A 2I0KA 5AE1A 2GQTA 3AM9A 2NQWA 4UD8A 1V97A 1I19A 5AE2A 2VFUA 1W1LA 2W55A 3JS8A 3DQ0A 1ZXIC 2Q85A 2PLSA 1FFUC 1MBTA 1W1SA 3FW8A 4BC9A 2GQUA 4XLOA 2OAIA 2O3GA 3S1DA 1E0YA 2R8DA 4DNSA 1FIQB 3EUB3 2EXRA 3FW9A 3S1EA 1E8FA 3BW7A 1QLTA 1FFVC 5FXDA 1JROA 1N61C 1N5XA 1T3QC 2VFTA 1AHVA 3FW7A 4BC7A 1UXYA 2VFSA 1W1RA 2BVGA 1FO4A 2P3HA 2PLIA 3DEDA 3W8XA 3LLBA 5HMRA 4BCAA 1W1QA 1VAOA 2R2ZA 5FXPA 3FWAA 2AXRA 1F0XA
chains in the Genus database with same CATH superfamily
3PM9A 1DIQA 5AE3A 3EJBB 5I1WA 1DZNA 4EC3A 2Y3SA 3NVVB 2BVFA 1E8GA 1WVEA 2VAOA 5D79A 1DIIA 2IPIA 3D2DA 3GSYA 3D2JA 4O95A 2E3TA 2Y4GA 5G5HB 5FXEA 3NVZB 5L6GA 5K8EA 4JAYA 5L6FA 3NVYB 4PVKA 4ML8A 1W1MA 2VFRA 1N62C 3D2HA 3I99A 4PWBA 3AN1A 5I1VA 2VFVA 3C0PA 2Q4WA 1SB3B 3NRZB 1AHUA 2P13A 3TSJA 4PWCA 3RJAA 1ZR6A 1JRPA 3ETRB 2Y3RA 3W8WA 1MBBA 2Y08A 4PVEA 3S1FA 4HG0A 2YVSA 3PQBA 1N60C 4BBYA 3W8ZA 1VDVA 3NS1B 3LAEA 3RJ8A 1W1KA 1WVFA 3TSHA 1E8HA 1N63C 3VTEA 4ZOHB 3EJDB 3EJEB 4JB1A 2W3RA 4MLAA 3SR6B 3AMZA 3NVWB 2BVHA 2W54A 2QPMA 1W1OA 1RM6B 1N5WC 3KJMA 4PZFA 1WYGA 2MBRA 1HSKA 3TX1A 4PYTA 4PVJA 1QLUA 1W1JA 3S1CA 2W3SA 4PVHA 5ADZA 4OALA 3HRDC 5HHZA 5G5GB 5HQXA 2QKNA 3B9JB 5FXFA 2P4PA 5AWVA 1AHZA 2RK5A 2I0KA 2UUUA 5AE1A 2GQTA 3AM9A 2NQWA 4UD8A 2WDWA 1V97A 1I19A 5AE2A 2VFUA 1W1LA 2W55A 3JS8A 3DQ0A 1ZXIC 2Q85A 2PLSA 1FFUC 1MBTA 1W1SA 3FW8A 4BC9A 2GQUA 4XLOA 2OAIA 2O3GA 3S1DA 1E0YA 2R8DA 4DNSA 1FIQB 2UUVA 3EUB3 2EXRA 3FW9A 3S1EA 1E8FA 3BW7A 1QLTA 1FFVC 5FXDA 1JROA 1N61C 1N5XA 1T3QC 2VFTA 1AHVA 3FW7A 4BC7A 1UXYA 2VFSA 1W1RA 2BVGA 1FO4A 2P3HA 2PLIA 3DEDA 3W8XA 3LLBA 3POPA 5HMRA 4BCAA 1W1QA 1VAOA 3HSUA 2R2ZA 5FXPA 3FWAA 2AXRA 1F0XA
chains in the Genus database with same CATH topology
3PM9A 1DIQA 5AE3A 5I1WA 1DZNA 4EC3A 2Y3SA 3NVVB 2BVFA 1E8GA 1WVEA 2VAOA 5D79A 1DIIA 2IPIA 3D2DA 3GSYA 3D2JA 4O95A 2E3TA 2Y4GA 5G5HB 5FXEA 3NVZB 5L6GA 5K8EA 4JAYA 5L6FA 3NVYB 4PVKA 4ML8A 1W1MA 2VFRA 1N62C 3D2HA 3I99A 4PWBA 3AN1A 5I1VA 2VFVA 3C0PA 2Q4WA 1SB3B 3NRZB 1AHUA 2P13A 3TSJA 4PWCA 3RJAA 1ZR6A 1JRPA 3ETRB 2Y3RA 3W8WA 1MBBA 2Y08A 4PVEA 3S1FA 4HG0A 2YVSA 3PQBA 1N60C 4BBYA 3W8ZA 1VDVA 3NS1B 3LAEA 3RJ8A 1W1KA 1WVFA 3TSHA 1E8HA 1N63C 3VTEA 4ZOHB 4JB1A 2W3RA 4MLAA 3SR6B 3AMZA 3NVWB 2BVHA 2W54A 2QPMA 1W1OA 1RM6B 1N5WC 3KJMA 4PZFA 1WYGA 2MBRA 1HSKA 3TX1A 4PYTA 4PVJA 1QLUA 1W1JA 3S1CA 2W3SA 4PVHA 5ADZA 4OALA 3HRDC 5HHZA 5G5GB 5HQXA 2QKNA 3B9JB 5FXFA 2P4PA 5AWVA 1AHZA 2RK5A 2I0KA 2UUUA 5AE1A 2GQTA 3AM9A 2NQWA 4UD8A 2WDWA 1V97A 1I19A 5AE2A 2VFUA 1W1LA 2W55A 3JS8A 3DQ0A 1ZXIC 2Q85A 2PLSA 1FFUC 1MBTA 1W1SA 3FW8A 4BC9A 2GQUA 4XLOA 2OAIA 2O3GA 3S1DA 1E0YA 2R8DA 4DNSA 1FIQB 2UUVA 3EUB3 2EXRA 3FW9A 3S1EA 1E8FA 3BW7A 1QLTA 1FFVC 5FXDA 1JROA 1N61C 1N5XA 1T3QC 2VFTA 1AHVA 3FW7A 4BC7A 1UXYA 2VFSA 1W1RA 2BVGA 1FO4A 2P3HA 2PLIA 3DEDA 3W8XA 3LLBA 3POPA 5HMRA 4BCAA 1W1QA 1VAOA 3HSUA 2R2ZA 5FXPA 3FWAA 2AXRA 1F0XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PM9 A;  1DIQ A;  5AE3 A;  1DZN A;  4EC3 A;  3NVV B;  2BVF A;  1E8G A;  1WVE A;  2VAO A;  5D79 A;  1DII A;  3D2D A;  3GSY A;  3D2J A;  4O95 A;  2E3T A;  5G5H B;  5FXE A;  3NVZ B;  4JAY A;  3NVY B;  4PVK A;  4ML8 A;  1W1M A;  2VFR A;  1N62 C;  3D2H A;  3I99 A;  4PWB A;  3AN1 A;  2VFV A;  3C0P A;  2Q4W A;  1SB3 B;  3NRZ B;  1AHU A;  2P13 A;  3TSJ A;  4PWC A;  1ZR6 A;  1JRP A;  3ETR B;  3W8W A;  1MBB A;  4PVE A;  3S1F A;  4HG0 A;  2YVS A;  1N60 C;  4BBY A;  3W8Z A;  1VDV A;  3NS1 B;  3LAE A;  1W1K A;  1WVF A;  3TSH A;  1E8H A;  1N63 C;  3VTE A;  4ZOH B;  4JB1 A;  2W3R A;  4MLA A;  3SR6 B;  3AMZ A;  3NVW B;  2BVH A;  2W54 A;  2QPM A;  1W1O A;  1RM6 B;  1N5W C;  3KJM A;  4PZF A;  1WYG A;  2MBR A;  1HSK A;  3TX1 A;  4PYT A;  4PVJ A;  1QLU A;  1W1J A;  3S1C A;  2W3S A;  4PVH A;  5ADZ A;  4OAL A;  3HRD C;  5HHZ A;  5G5G B;  5HQX A;  2QKN A;  3B9J B;  5FXF A;  2P4P A;  1AHZ A;  2RK5 A;  2I0K A;  5AE1 A;  2GQT A;  3AM9 A;  2NQW A;  4UD8 A;  1V97 A;  1I19 A;  5AE2 A;  2VFU A;  1W1L A;  2W55 A;  3JS8 A;  3DQ0 A;  1ZXI C;  2Q85 A;  2PLS A;  1FFU C;  1MBT A;  1W1S A;  3FW8 A;  4BC9 A;  2GQU A;  4XLO A;  2OAI A;  2O3G A;  3S1D A;  1E0Y A;  2R8D A;  4DNS A;  1FIQ B;  3EUB 3;  2EXR A;  3FW9 A;  3S1E A;  1E8F A;  3BW7 A;  1QLT A;  1FFV C;  5FXD A;  1JRO A;  1N61 C;  1N5X A;  1T3Q C;  2VFT A;  1AHV A;  3FW7 A;  4BC7 A;  1UXY A;  2VFS A;  1W1R A;  2BVG A;  1FO4 A;  2P3H A;  2PLI A;  3DED A;  3W8X A;  3LLB A;  5HMR A;  4BCA A;  1W1Q A;  1VAO A;  2R2Z A;  5FXP A;  3FWA A;  2AXR A;  1F0X A; 
#chains in the Genus database with same CATH topology
 3PM9 A;  1DIQ A;  5AE3 A;  3EJB B;  5I1W A;  1DZN A;  4EC3 A;  2Y3S A;  3NVV B;  2BVF A;  1E8G A;  1WVE A;  2VAO A;  5D79 A;  1DII A;  2IPI A;  3D2D A;  3GSY A;  3D2J A;  4O95 A;  2E3T A;  2Y4G A;  5G5H B;  5FXE A;  3NVZ B;  5L6G A;  5K8E A;  4JAY A;  5L6F A;  3NVY B;  4PVK A;  4ML8 A;  1W1M A;  2VFR A;  1N62 C;  3D2H A;  3I99 A;  4PWB A;  3AN1 A;  5I1V A;  2VFV A;  3C0P A;  2Q4W A;  1SB3 B;  3NRZ B;  1AHU A;  2P13 A;  3TSJ A;  4PWC A;  3RJA A;  1ZR6 A;  1JRP A;  3ETR B;  2Y3R A;  3W8W A;  1MBB A;  2Y08 A;  4PVE A;  3S1F A;  4HG0 A;  2YVS A;  3PQB A;  1N60 C;  4BBY A;  3W8Z A;  1VDV A;  3NS1 B;  3LAE A;  3RJ8 A;  1W1K A;  1WVF A;  3TSH A;  1E8H A;  1N63 C;  3VTE A;  4ZOH B;  3EJD B;  3EJE B;  4JB1 A;  2W3R A;  4MLA A;  3SR6 B;  3AMZ A;  3NVW B;  2BVH A;  2W54 A;  2QPM A;  1W1O A;  1RM6 B;  1N5W C;  3KJM A;  4PZF A;  1WYG A;  2MBR A;  1HSK A;  3TX1 A;  4PYT A;  4PVJ A;  1QLU A;  1W1J A;  3S1C A;  2W3S A;  4PVH A;  5ADZ A;  4OAL A;  3HRD C;  5HHZ A;  5G5G B;  5HQX A;  2QKN A;  3B9J B;  5FXF A;  2P4P A;  5AWV A;  1AHZ A;  2RK5 A;  2I0K A;  2UUU A;  5AE1 A;  2GQT A;  3AM9 A;  2NQW A;  4UD8 A;  2WDW A;  1V97 A;  1I19 A;  5AE2 A;  2VFU A;  1W1L A;  2W55 A;  3JS8 A;  3DQ0 A;  1ZXI C;  2Q85 A;  2PLS A;  1FFU C;  1MBT A;  1W1S A;  3FW8 A;  4BC9 A;  2GQU A;  4XLO A;  2OAI A;  2O3G A;  3S1D A;  1E0Y A;  2R8D A;  4DNS A;  1FIQ B;  2UUV A;  3EUB 3;  2EXR A;  3FW9 A;  3S1E A;  1E8F A;  3BW7 A;  1QLT A;  1FFV C;  5FXD A;  1JRO A;  1N61 C;  1N5X A;  1T3Q C;  2VFT A;  1AHV A;  3FW7 A;  4BC7 A;  1UXY A;  2VFS A;  1W1R A;  2BVG A;  1FO4 A;  2P3H A;  2PLI A;  3DED A;  3W8X A;  3LLB A;  3POP A;  5HMR A;  4BCA A;  1W1Q A;  1VAO A;  3HSU A;  2R2Z A;  5FXP A;  3FWA A;  2AXR A;  1F0X A; 
#chains in the Genus database with same CATH homology
 3PM9 A;  1DIQ A;  5AE3 A;  5I1W A;  1DZN A;  4EC3 A;  2Y3S A;  3NVV B;  2BVF A;  1E8G A;  1WVE A;  2VAO A;  5D79 A;  1DII A;  2IPI A;  3D2D A;  3GSY A;  3D2J A;  4O95 A;  2E3T A;  2Y4G A;  5G5H B;  5FXE A;  3NVZ B;  5L6G A;  5K8E A;  4JAY A;  5L6F A;  3NVY B;  4PVK A;  4ML8 A;  1W1M A;  2VFR A;  1N62 C;  3D2H A;  3I99 A;  4PWB A;  3AN1 A;  5I1V A;  2VFV A;  3C0P A;  2Q4W A;  1SB3 B;  3NRZ B;  1AHU A;  2P13 A;  3TSJ A;  4PWC A;  3RJA A;  1ZR6 A;  1JRP A;  3ETR B;  2Y3R A;  3W8W A;  1MBB A;  2Y08 A;  4PVE A;  3S1F A;  4HG0 A;  2YVS A;  3PQB A;  1N60 C;  4BBY A;  3W8Z A;  1VDV A;  3NS1 B;  3LAE A;  3RJ8 A;  1W1K A;  1WVF A;  3TSH A;  1E8H A;  1N63 C;  3VTE A;  4ZOH B;  4JB1 A;  2W3R A;  4MLA A;  3SR6 B;  3AMZ A;  3NVW B;  2BVH A;  2W54 A;  2QPM A;  1W1O A;  1RM6 B;  1N5W C;  3KJM A;  4PZF A;  1WYG A;  2MBR A;  1HSK A;  3TX1 A;  4PYT A;  4PVJ A;  1QLU A;  1W1J A;  3S1C A;  2W3S A;  4PVH A;  5ADZ A;  4OAL A;  3HRD C;  5HHZ A;  5G5G B;  5HQX A;  2QKN A;  3B9J B;  5FXF A;  2P4P A;  5AWV A;  1AHZ A;  2RK5 A;  2I0K A;  2UUU A;  5AE1 A;  2GQT A;  3AM9 A;  2NQW A;  4UD8 A;  2WDW A;  1V97 A;  1I19 A;  5AE2 A;  2VFU A;  1W1L A;  2W55 A;  3JS8 A;  3DQ0 A;  1ZXI C;  2Q85 A;  2PLS A;  1FFU C;  1MBT A;  1W1S A;  3FW8 A;  4BC9 A;  2GQU A;  4XLO A;  2OAI A;  2O3G A;  3S1D A;  1E0Y A;  2R8D A;  4DNS A;  1FIQ B;  2UUV A;  3EUB 3;  2EXR A;  3FW9 A;  3S1E A;  1E8F A;  3BW7 A;  1QLT A;  1FFV C;  5FXD A;  1JRO A;  1N61 C;  1N5X A;  1T3Q C;  2VFT A;  1AHV A;  3FW7 A;  4BC7 A;  1UXY A;  2VFS A;  1W1R A;  2BVG A;  1FO4 A;  2P3H A;  2PLI A;  3DED A;  3W8X A;  3LLB A;  3POP A;  5HMR A;  4BCA A;  1W1Q A;  1VAO A;  3HSU A;  2R2Z A;  5FXP A;  3FWA A;  2AXR A;  1F0X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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