1WVFA

P-cresol methylhydroxylase: alteration of the structure of the flavoprotein subunit upon its binding to the cytochrome subunit
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
515
structure length
515
Chain Sequence
AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit
publication title p-Cresol Methylhydroxylase: Alteration of the Structure of the Flavoprotein Subunit upon Its Binding to the Cytochrome Subunit
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 193
structure length 515
sequence length 515
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 2004-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1wvfA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1wvfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1wvfA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1wvfA03
2P13A 2RK5A 1FIQB 3EUB3 5HQXA 4XLOA 3AM9A 3TSHA 3TX1A 4ZOHB 3SR6B 5FXPA 2BVHA 3FW9A 3JS8A 1W1SA 4O95A 2R8DA 1ZR6A 1QLTA 4BC9A 3D2DA 2BVGA 4BC7A 1WYGA 1WVFA 2E3TA 3NRZB 1DIQA 2VFRA 1HSKA 3NVVB 2EXRA 2VFVA 4BCAA 5FXFA 4MLAA 3D2HA 3NVZB 2GQTA 1DZNA 4BBYA 1AHZA 2P3HA 3S1DA 1AHUA 1W1MA 3FWAA 4JB1A 1N61C 1N5WC 1SB3B 2VAOA 3I99A 1AHVA 2AXRA 2W3RA 4HG0A 2QPMA 5D79A 1UXYA 1I19A 2Q85A 2W54A 3PM9A 3B9JB 3GSYA 1T3QC 5AE2A 3W8ZA 5FXEA 4PVJA 1QLUA 1RM6B 2GQUA 2W55A 1F0XA 3FW7A 4PVHA 1DIIA 1W1LA 2VFSA 5G5GB 4UD8A 4JAYA 4PVKA 1FFVC 4EC3A 2PLSA 2W3SA 1W1QA 4ML8A 5AE1A 1N63C 1FFUC 1ZXIC 2MBRA 1FO4A 5G5HB 4PYTA 3TSJA 3AN1A 2Q4WA 3DQ0A 4PVEA 5AE3A 1E8FA 3VTEA 3LAEA 3AMZA 3NS1B 3S1EA 1N62C 3W8XA 4PWBA 3FW8A 2NQWA 1E8HA 4PZFA 1N60C 1W1OA 3C0PA 3NVYB 5HHZA 1E8GA 2YVSA 2VFTA 1W1JA 1E0YA 2PLIA 1MBTA 4PWCA 3LLBA 4DNSA 1VDVA 2P4PA 1VAOA 3D2JA 2R2ZA 5HMRA 2VFUA 2I0KA 3S1CA 1W1RA 2O3GA 2BVFA 3KJMA 1JRPA 3BW7A 5ADZA 1WVEA 4OALA 1V97A 1N5XA 2OAIA 3W8WA 3HRDC 1JROA 3ETRB 1MBBA 3NVWB 5FXDA 3DEDA 3S1FA 2QKNA 1W1KA
chains in the Genus database with same CATH superfamily
2P13A 2Y3SA 2RK5A 1FIQB 3EUB3 5HQXA 5L6FA 4XLOA 3AM9A 3TSHA 3TX1A 4ZOHB 3SR6B 5FXPA 2BVHA 3FW9A 3JS8A 1W1SA 4O95A 2R8DA 1ZR6A 1QLTA 4BC9A 3D2DA 2BVGA 4BC7A 1WYGA 1WVFA 2E3TA 3NRZB 1DIQA 2VFRA 1HSKA 3NVVB 2EXRA 2VFVA 4BCAA 5FXFA 2UUUA 4MLAA 5K8EA 3D2HA 3NVZB 2GQTA 1DZNA 4BBYA 1AHZA 2P3HA 3HSUA 3S1DA 1AHUA 1W1MA 3FWAA 4JB1A 1N61C 1N5WC 1SB3B 2VAOA 3I99A 1AHVA 2AXRA 2W3RA 4HG0A 2QPMA 5D79A 1UXYA 1I19A 2Q85A 2W54A 3PM9A 3B9JB 3GSYA 1T3QC 5AE2A 2Y08A 3W8ZA 2Y3RA 5FXEA 4PVJA 1QLUA 1RM6B 2GQUA 2W55A 1F0XA 3FW7A 4PVHA 1DIIA 1W1LA 2VFSA 5G5GB 4UD8A 5L6GA 4JAYA 4PVKA 1FFVC 4EC3A 2PLSA 2W3SA 1W1QA 4ML8A 5AE1A 5I1WA 2WDWA 1N63C 1FFUC 1ZXIC 3PQBA 2MBRA 1FO4A 3EJEB 2UUVA 5G5HB 4PYTA 3TSJA 3AN1A 2Q4WA 3DQ0A 4PVEA 2IPIA 5AE3A 1E8FA 3EJBB 3VTEA 3LAEA 5I1VA 3AMZA 3NS1B 5AWVA 3S1EA 1N62C 3W8XA 4PWBA 3FW8A 2NQWA 3EJDB 1E8HA 3RJ8A 4PZFA 1N60C 1W1OA 3C0PA 3NVYB 5HHZA 1E8GA 2YVSA 2VFTA 1W1JA 1E0YA 3RJAA 2PLIA 1MBTA 4PWCA 3LLBA 4DNSA 1VDVA 2P4PA 1VAOA 3D2JA 2R2ZA 5HMRA 2VFUA 2I0KA 3S1CA 1W1RA 2O3GA 2BVFA 2Y4GA 3KJMA 1JRPA 3BW7A 5ADZA 1WVEA 4OALA 1V97A 1N5XA 2OAIA 3W8WA 3HRDC 1JROA 3POPA 3ETRB 1MBBA 3NVWB 5FXDA 3DEDA 3S1FA 2QKNA 1W1KA
chains in the Genus database with same CATH topology
2P13A 2Y3SA 2RK5A 1FIQB 3EUB3 5HQXA 5L6FA 4XLOA 3AM9A 3TSHA 3TX1A 4ZOHB 3SR6B 5FXPA 2BVHA 3FW9A 3JS8A 1W1SA 4O95A 2R8DA 1ZR6A 1QLTA 4BC9A 3D2DA 2BVGA 4BC7A 1WYGA 1WVFA 2E3TA 3NRZB 1DIQA 2VFRA 1HSKA 3NVVB 2EXRA 2VFVA 4BCAA 5FXFA 2UUUA 4MLAA 5K8EA 3D2HA 3NVZB 2GQTA 1DZNA 4BBYA 1AHZA 2P3HA 3HSUA 3S1DA 1AHUA 1W1MA 3FWAA 4JB1A 1N61C 1N5WC 1SB3B 2VAOA 3I99A 1AHVA 2AXRA 2W3RA 4HG0A 2QPMA 5D79A 1UXYA 1I19A 2Q85A 2W54A 3PM9A 3B9JB 3GSYA 1T3QC 5AE2A 2Y08A 3W8ZA 2Y3RA 5FXEA 4PVJA 1QLUA 1RM6B 2GQUA 2W55A 1F0XA 3FW7A 4PVHA 1DIIA 1W1LA 2VFSA 5G5GB 4UD8A 5L6GA 4JAYA 4PVKA 1FFVC 4EC3A 2PLSA 2W3SA 1W1QA 4ML8A 5AE1A 5I1WA 2WDWA 1N63C 1FFUC 1ZXIC 3PQBA 2MBRA 1FO4A 2UUVA 5G5HB 4PYTA 3TSJA 3AN1A 2Q4WA 3DQ0A 4PVEA 2IPIA 5AE3A 1E8FA 3VTEA 3LAEA 5I1VA 3AMZA 3NS1B 5AWVA 3S1EA 1N62C 3W8XA 4PWBA 3FW8A 2NQWA 1E8HA 3RJ8A 4PZFA 1N60C 1W1OA 3C0PA 3NVYB 5HHZA 1E8GA 2YVSA 2VFTA 1W1JA 1E0YA 3RJAA 2PLIA 1MBTA 4PWCA 3LLBA 4DNSA 1VDVA 2P4PA 1VAOA 3D2JA 2R2ZA 5HMRA 2VFUA 2I0KA 3S1CA 1W1RA 2O3GA 2BVFA 2Y4GA 3KJMA 1JRPA 3BW7A 5ADZA 1WVEA 4OALA 1V97A 1N5XA 2OAIA 3W8WA 3HRDC 1JROA 3POPA 3ETRB 1MBBA 3NVWB 5FXDA 3DEDA 3S1FA 2QKNA 1W1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P13 A;  2RK5 A;  1FIQ B;  3EUB 3;  5HQX A;  4XLO A;  3AM9 A;  3TSH A;  3TX1 A;  4ZOH B;  3SR6 B;  5FXP A;  2BVH A;  3FW9 A;  3JS8 A;  1W1S A;  4O95 A;  2R8D A;  1ZR6 A;  1QLT A;  4BC9 A;  3D2D A;  2BVG A;  4BC7 A;  1WYG A;  1WVF A;  2E3T A;  3NRZ B;  1DIQ A;  2VFR A;  1HSK A;  3NVV B;  2EXR A;  2VFV A;  4BCA A;  5FXF A;  4MLA A;  3D2H A;  3NVZ B;  2GQT A;  1DZN A;  4BBY A;  1AHZ A;  2P3H A;  3S1D A;  1AHU A;  1W1M A;  3FWA A;  4JB1 A;  1N61 C;  1N5W C;  1SB3 B;  2VAO A;  3I99 A;  1AHV A;  2AXR A;  2W3R A;  4HG0 A;  2QPM A;  5D79 A;  1UXY A;  1I19 A;  2Q85 A;  2W54 A;  3PM9 A;  3B9J B;  3GSY A;  1T3Q C;  5AE2 A;  3W8Z A;  5FXE A;  4PVJ A;  1QLU A;  1RM6 B;  2GQU A;  2W55 A;  1F0X A;  3FW7 A;  4PVH A;  1DII A;  1W1L A;  2VFS A;  5G5G B;  4UD8 A;  4JAY A;  4PVK A;  1FFV C;  4EC3 A;  2PLS A;  2W3S A;  1W1Q A;  4ML8 A;  5AE1 A;  1N63 C;  1FFU C;  1ZXI C;  2MBR A;  1FO4 A;  5G5H B;  4PYT A;  3TSJ A;  3AN1 A;  2Q4W A;  3DQ0 A;  4PVE A;  5AE3 A;  1E8F A;  3VTE A;  3LAE A;  3AMZ A;  3NS1 B;  3S1E A;  1N62 C;  3W8X A;  4PWB A;  3FW8 A;  2NQW A;  1E8H A;  4PZF A;  1N60 C;  1W1O A;  3C0P A;  3NVY B;  5HHZ A;  1E8G A;  2YVS A;  2VFT A;  1W1J A;  1E0Y A;  2PLI A;  1MBT A;  4PWC A;  3LLB A;  4DNS A;  1VDV A;  2P4P A;  1VAO A;  3D2J A;  2R2Z A;  5HMR A;  2VFU A;  2I0K A;  3S1C A;  1W1R A;  2O3G A;  2BVF A;  3KJM A;  1JRP A;  3BW7 A;  5ADZ A;  1WVE A;  4OAL A;  1V97 A;  1N5X A;  2OAI A;  3W8W A;  3HRD C;  1JRO A;  3ETR B;  1MBB A;  3NVW B;  5FXD A;  3DED A;  3S1F A;  2QKN A;  1W1K A; 
#chains in the Genus database with same CATH topology
 2P13 A;  2Y3S A;  2RK5 A;  1FIQ B;  3EUB 3;  5HQX A;  5L6F A;  4XLO A;  3AM9 A;  3TSH A;  3TX1 A;  4ZOH B;  3SR6 B;  5FXP A;  2BVH A;  3FW9 A;  3JS8 A;  1W1S A;  4O95 A;  2R8D A;  1ZR6 A;  1QLT A;  4BC9 A;  3D2D A;  2BVG A;  4BC7 A;  1WYG A;  1WVF A;  2E3T A;  3NRZ B;  1DIQ A;  2VFR A;  1HSK A;  3NVV B;  2EXR A;  2VFV A;  4BCA A;  5FXF A;  2UUU A;  4MLA A;  5K8E A;  3D2H A;  3NVZ B;  2GQT A;  1DZN A;  4BBY A;  1AHZ A;  2P3H A;  3HSU A;  3S1D A;  1AHU A;  1W1M A;  3FWA A;  4JB1 A;  1N61 C;  1N5W C;  1SB3 B;  2VAO A;  3I99 A;  1AHV A;  2AXR A;  2W3R A;  4HG0 A;  2QPM A;  5D79 A;  1UXY A;  1I19 A;  2Q85 A;  2W54 A;  3PM9 A;  3B9J B;  3GSY A;  1T3Q C;  5AE2 A;  2Y08 A;  3W8Z A;  2Y3R A;  5FXE A;  4PVJ A;  1QLU A;  1RM6 B;  2GQU A;  2W55 A;  1F0X A;  3FW7 A;  4PVH A;  1DII A;  1W1L A;  2VFS A;  5G5G B;  4UD8 A;  5L6G A;  4JAY A;  4PVK A;  1FFV C;  4EC3 A;  2PLS A;  2W3S A;  1W1Q A;  4ML8 A;  5AE1 A;  5I1W A;  2WDW A;  1N63 C;  1FFU C;  1ZXI C;  3PQB A;  2MBR A;  1FO4 A;  3EJE B;  2UUV A;  5G5H B;  4PYT A;  3TSJ A;  3AN1 A;  2Q4W A;  3DQ0 A;  4PVE A;  2IPI A;  5AE3 A;  1E8F A;  3EJB B;  3VTE A;  3LAE A;  5I1V A;  3AMZ A;  3NS1 B;  5AWV A;  3S1E A;  1N62 C;  3W8X A;  4PWB A;  3FW8 A;  2NQW A;  3EJD B;  1E8H A;  3RJ8 A;  4PZF A;  1N60 C;  1W1O A;  3C0P A;  3NVY B;  5HHZ A;  1E8G A;  2YVS A;  2VFT A;  1W1J A;  1E0Y A;  3RJA A;  2PLI A;  1MBT A;  4PWC A;  3LLB A;  4DNS A;  1VDV A;  2P4P A;  1VAO A;  3D2J A;  2R2Z A;  5HMR A;  2VFU A;  2I0K A;  3S1C A;  1W1R A;  2O3G A;  2BVF A;  2Y4G A;  3KJM A;  1JRP A;  3BW7 A;  5ADZ A;  1WVE A;  4OAL A;  1V97 A;  1N5X A;  2OAI A;  3W8W A;  3HRD C;  1JRO A;  3POP A;  3ETR B;  1MBB A;  3NVW B;  5FXD A;  3DED A;  3S1F A;  2QKN A;  1W1K A; 
#chains in the Genus database with same CATH homology
 2P13 A;  2Y3S A;  2RK5 A;  1FIQ B;  3EUB 3;  5HQX A;  5L6F A;  4XLO A;  3AM9 A;  3TSH A;  3TX1 A;  4ZOH B;  3SR6 B;  5FXP A;  2BVH A;  3FW9 A;  3JS8 A;  1W1S A;  4O95 A;  2R8D A;  1ZR6 A;  1QLT A;  4BC9 A;  3D2D A;  2BVG A;  4BC7 A;  1WYG A;  1WVF A;  2E3T A;  3NRZ B;  1DIQ A;  2VFR A;  1HSK A;  3NVV B;  2EXR A;  2VFV A;  4BCA A;  5FXF A;  2UUU A;  4MLA A;  5K8E A;  3D2H A;  3NVZ B;  2GQT A;  1DZN A;  4BBY A;  1AHZ A;  2P3H A;  3HSU A;  3S1D A;  1AHU A;  1W1M A;  3FWA A;  4JB1 A;  1N61 C;  1N5W C;  1SB3 B;  2VAO A;  3I99 A;  1AHV A;  2AXR A;  2W3R A;  4HG0 A;  2QPM A;  5D79 A;  1UXY A;  1I19 A;  2Q85 A;  2W54 A;  3PM9 A;  3B9J B;  3GSY A;  1T3Q C;  5AE2 A;  2Y08 A;  3W8Z A;  2Y3R A;  5FXE A;  4PVJ A;  1QLU A;  1RM6 B;  2GQU A;  2W55 A;  1F0X A;  3FW7 A;  4PVH A;  1DII A;  1W1L A;  2VFS A;  5G5G B;  4UD8 A;  5L6G A;  4JAY A;  4PVK A;  1FFV C;  4EC3 A;  2PLS A;  2W3S A;  1W1Q A;  4ML8 A;  5AE1 A;  5I1W A;  2WDW A;  1N63 C;  1FFU C;  1ZXI C;  3PQB A;  2MBR A;  1FO4 A;  2UUV A;  5G5H B;  4PYT A;  3TSJ A;  3AN1 A;  2Q4W A;  3DQ0 A;  4PVE A;  2IPI A;  5AE3 A;  1E8F A;  3VTE A;  3LAE A;  5I1V A;  3AMZ A;  3NS1 B;  5AWV A;  3S1E A;  1N62 C;  3W8X A;  4PWB A;  3FW8 A;  2NQW A;  1E8H A;  3RJ8 A;  4PZF A;  1N60 C;  1W1O A;  3C0P A;  3NVY B;  5HHZ A;  1E8G A;  2YVS A;  2VFT A;  1W1J A;  1E0Y A;  3RJA A;  2PLI A;  1MBT A;  4PWC A;  3LLB A;  4DNS A;  1VDV A;  2P4P A;  1VAO A;  3D2J A;  2R2Z A;  5HMR A;  2VFU A;  2I0K A;  3S1C A;  1W1R A;  2O3G A;  2BVF A;  2Y4G A;  3KJM A;  1JRP A;  3BW7 A;  5ADZ A;  1WVE A;  4OAL A;  1V97 A;  1N5X A;  2OAI A;  3W8W A;  3HRD C;  1JRO A;  3POP A;  3ETR B;  1MBB A;  3NVW B;  5FXD A;  3DED A;  3S1F A;  2QKN A;  1W1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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