The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
173
|
sequence length |
506
|
structure length |
500
|
Chain Sequence |
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
|
| publication title |
Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb |
| source organism |
Arabidopsis thaliana
|
| total genus |
173
|
| structure length |
500
|
| sequence length |
506
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.1.1.194: Coniferyl-alcohol dehydrogenase. |
| pdb deposition date | 2014-12-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01565 | FAD_binding_4 | FAD binding domain |
| A | PF08031 | BBE | Berberine and berberine like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase; Chain A, domain 3 | Vanillyl-alcohol Oxidase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 2E3T A; 1WVE A; 5AWV A; 3FW9 A; 3SR6 B; 1DZN A; 5HMR A; 4MLA A; 2Q85 A; 3B9J B; 1ZR6 A; 1E8F A; 3POP A; 3FW7 A; 5FXD A; 1AHZ A; 2VFU A; 5K8E A; 1WYG A; 2GQT A; 3FW8 A; 1I19 A; 2I0K A; 4JAY A; 3NVZ B; 4EC3 A; 5L6F A; 4XLO A; 2BVF A; 4UD8 A; 2Y08 A; 1W1O A; 5D79 A; 2IPI A; 4BC9 A; 3D2J A; 4PVH A; 3EUB 3; 1E0Y A; 3C0P A; 3PM9 A; 3W8X A; 3BW7 A; 4PZF A; 3KJM A; 3FWA A; 3S1E A; 1N61 C; 1W1S A; 5L6G A; 3AN1 A; 3AM9 A; 3NS1 B; 5FXF A; 4ZOH B; 3ETR B; 3W8W A; 2W3S A; 5ADZ A; 4PWC A; 1FO4 A; 4OAL A; 5HQX A; 1FFV C; 1N63 C; 1QLU A; 2W55 A; 2GQU A; 1W1L A; 5I1V A; 3D2H A; 4JB1 A; 2MBR A; 1W1M A; 2W3R A; 2QPM A; 3I99 A; 1JRO A; 3S1C A; 4PVJ A; 1E8H A; 3HSU A; 2WDW A; 2QKN A; 2AXR A; 4PWB A; 2Y3S A; 1DII A; 5HHZ A; 2VFT A; 5AE3 A; 2BVH A; 1FIQ B; 1N62 C; 2W54 A; 2Y4G A; 1AHU A; 3S1F A; 4BC7 A; 1W1J A; 2VFV A; 1QLT A; 1MBT A; 2Y3R A; 3AMZ A; 1T3Q C; 3TX1 A; 3PQB A; 1DIQ A; 3DQ0 A; 3TSJ A; 5I1W A; 1FFU C; 1N60 C; 2Q4W A; 4O95 A; 3JS8 A; 1ZXI C; 3S1D A; 3RJA A; 4DNS A; 3TSH A; 2VFR A; 5AE1 A; 1F0X A; 2VAO A; 1WVF A; 3RJ8 A; 1VDV A; 4PVE A; 3W8Z A; 1VAO A; 4BCA A; 1V97 A; 4ML8 A; 1W1R A; 5FXP A; 3GSY A; 4PYT A; 3NRZ B; 5FXE A; 1AHV A; 2VFS A; 1MBB A; 2EXR A; 1W1K A; 3VTE A; 1N5X A; 4PVK A; 1N5W C; 1E8G A; 4BBY A; 5AE2 A; 1W1Q A; 3D2D A; 2BVG A; 1UXY A; 1HSK A; #chains in the Genus database with same CATH topology 2E3T A; 3EJD B; 3NVW B; 1WVE A; 2R2Z A; 5AWV A; 3FW9 A; 3SR6 B; 1DZN A; 5HMR A; 2P13 A; 4MLA A; 2PLS A; 2Q85 A; 3B9J B; 1ZR6 A; 3NVY B; 1E8F A; 3DED A; 3POP A; 5G5G B; 3FW7 A; 2UUU A; 5FXD A; 1AHZ A; 2VFU A; 5K8E A; 1WYG A; 2GQT A; 3FW8 A; 1I19 A; 2I0K A; 4JAY A; 3NVZ B; 4EC3 A; 5L6F A; 4XLO A; 2BVF A; 2P3H A; 4UD8 A; 2Y08 A; 1W1O A; 5D79 A; 2IPI A; 4BC9 A; 3NVV B; 3D2J A; 4PVH A; 3EUB 3; 4HG0 A; 1E0Y A; 3C0P A; 3PM9 A; 3W8X A; 3BW7 A; 4PZF A; 3KJM A; 3FWA A; 3S1E A; 2NQW A; 1N61 C; 1W1S A; 2OAI A; 2P4P A; 5L6G A; 1JRP A; 3AN1 A; 3AM9 A; 3NS1 B; 5FXF A; 4ZOH B; 3ETR B; 3W8W A; 2W3S A; 5ADZ A; 4PWC A; 1FO4 A; 4OAL A; 5HQX A; 1FFV C; 1N63 C; 1QLU A; 2W55 A; 2GQU A; 1W1L A; 5I1V A; 3D2H A; 4JB1 A; 2MBR A; 1W1M A; 2W3R A; 3EJB B; 2QPM A; 3I99 A; 1SB3 B; 1JRO A; 3S1C A; 3LLB A; 3LAE A; 4PVJ A; 1E8H A; 3HSU A; 2WDW A; 2QKN A; 2AXR A; 4PWB A; 2Y3S A; 1DII A; 2YVS A; 5HHZ A; 2VFT A; 5AE3 A; 2BVH A; 1FIQ B; 1N62 C; 2W54 A; 2Y4G A; 1AHU A; 3HRD C; 3S1F A; 4BC7 A; 1W1J A; 2VFV A; 1QLT A; 1MBT A; 2R8D A; 2Y3R A; 3AMZ A; 1T3Q C; 3TX1 A; 3PQB A; 1DIQ A; 3DQ0 A; 3TSJ A; 5G5H B; 5I1W A; 1FFU C; 1N60 C; 2Q4W A; 4O95 A; 3JS8 A; 1ZXI C; 3S1D A; 3RJA A; 4DNS A; 3TSH A; 2VFR A; 5AE1 A; 1F0X A; 2VAO A; 1WVF A; 3RJ8 A; 1VDV A; 4PVE A; 3W8Z A; 1VAO A; 4BCA A; 3EJE B; 1V97 A; 4ML8 A; 1W1R A; 5FXP A; 3GSY A; 4PYT A; 3NRZ B; 5FXE A; 1AHV A; 2VFS A; 1MBB A; 2O3G A; 2EXR A; 1W1K A; 3VTE A; 1N5X A; 4PVK A; 1N5W C; 2RK5 A; 1E8G A; 4BBY A; 5AE2 A; 1W1Q A; 1RM6 B; 3D2D A; 2BVG A; 1UXY A; 1HSK A; 2UUV A; 2PLI A; #chains in the Genus database with same CATH homology 2E3T A; 3NVW B; 1WVE A; 2R2Z A; 5AWV A; 3FW9 A; 3SR6 B; 1DZN A; 5HMR A; 2P13 A; 4MLA A; 2PLS A; 2Q85 A; 3B9J B; 1ZR6 A; 3DED A; 1E8F A; 3NVY B; 3POP A; 5G5G B; 3FW7 A; 2UUU A; 5FXD A; 1AHZ A; 2VFU A; 5K8E A; 1WYG A; 2GQT A; 3FW8 A; 1I19 A; 2I0K A; 4JAY A; 3NVZ B; 4EC3 A; 5L6F A; 4XLO A; 2BVF A; 2P3H A; 4UD8 A; 2Y08 A; 1W1O A; 5D79 A; 2IPI A; 4BC9 A; 3NVV B; 3D2J A; 4PVH A; 3EUB 3; 4HG0 A; 1E0Y A; 3C0P A; 3PM9 A; 3W8X A; 3BW7 A; 4PZF A; 3KJM A; 3FWA A; 3S1E A; 2NQW A; 1N61 C; 1W1S A; 2OAI A; 2P4P A; 5L6G A; 1JRP A; 3AN1 A; 3AM9 A; 3NS1 B; 5FXF A; 4ZOH B; 3ETR B; 3W8W A; 2W3S A; 5ADZ A; 4PWC A; 1FO4 A; 4OAL A; 5HQX A; 1FFV C; 1N63 C; 1QLU A; 2W55 A; 2GQU A; 1W1L A; 5I1V A; 3D2H A; 4JB1 A; 2MBR A; 1W1M A; 2W3R A; 2QPM A; 3I99 A; 1SB3 B; 1JRO A; 3S1C A; 3LLB A; 3LAE A; 4PVJ A; 1E8H A; 3HSU A; 2WDW A; 2QKN A; 2AXR A; 4PWB A; 2Y3S A; 1DII A; 2YVS A; 5HHZ A; 2VFT A; 5AE3 A; 2BVH A; 1FIQ B; 1N62 C; 2W54 A; 2Y4G A; 1AHU A; 3HRD C; 3S1F A; 4BC7 A; 1W1J A; 2VFV A; 1QLT A; 1MBT A; 2R8D A; 2Y3R A; 3AMZ A; 1T3Q C; 3TX1 A; 3PQB A; 1DIQ A; 3DQ0 A; 3TSJ A; 5G5H B; 5I1W A; 1FFU C; 1N60 C; 2Q4W A; 4O95 A; 3JS8 A; 1ZXI C; 3S1D A; 3RJA A; 4DNS A; 3TSH A; 2VFR A; 5AE1 A; 1F0X A; 2VAO A; 1WVF A; 3RJ8 A; 1VDV A; 4PVE A; 3W8Z A; 1VAO A; 4BCA A; 1V97 A; 4ML8 A; 1W1R A; 5FXP A; 3GSY A; 4PYT A; 3NRZ B; 5FXE A; 1AHV A; 2VFS A; 1MBB A; 2O3G A; 2EXR A; 1W1K A; 3VTE A; 1N5X A; 4PVK A; 1N5W C; 2RK5 A; 1E8G A; 4BBY A; 5AE2 A; 1W1Q A; 1RM6 B; 3D2D A; 2BVG A; 1UXY A; 1HSK A; 2UUV A; 2PLI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
