4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
2I0KA 2E3TA 4JAYA 4PVEA 1T3QC 3KJMA 2BVFA 3FW8A 3GSYA 4BBYA 3BW7A 5AE1A 3S1EA 4PVKA 2VFRA 1W1RA 1FIQB 5HQXA 4PWCA 2Y08A 3TSHA 1E8GA 4MLAA 2QKNA 2VFUA 5FXEA 5HMRA 3PQBA 3NVZB 1QLTA 1W1MA 3S1DA 1ZR6A 2AXRA 5I1WA 5HHZA 1DIIA 5K8EA 3NS1B 2Q4WA 1AHUA 5FXDA 4PZFA 1FO4A 3W8WA 2Y3RA 4UD8A 3FW7A 4ZOHB 3DQ0A 2EXRA 4OALA 5AE3A 4JB1A 1DZNA 3TX1A 3VTEA 1N62C 2BVGA 4PVHA 2IPIA 2WDWA 2Y4GA 5I1VA 1MBTA 2VFSA 2VFVA 3C0PA 4PYTA 4BC9A 3S1CA 2W55A 2W3SA 1N5XA 1HSKA 3ETRB 1N5WC 2GQTA 2VFTA 1W1KA 1JROA 2W54A 5AE2A 4BCAA 3POPA 1QLUA 1E8FA 1W1QA 1F0XA 3W8XA 3SR6B 1W1OA 3RJ8A 5L6GA 5FXPA 1W1JA 3D2DA 5FXFA 4PVJA 3AMZA 3AM9A 4DNSA 1N63C 3FW9A 2GQUA 5L6FA 4O95A 1W1LA 1V97A 3TSJA 4BC7A 1WVFA 3EUB3 4PWBA 1N60C 1ZXIC 1UXYA 2Y3SA 1WVEA 3HSUA 3D2JA 3D2HA 3JS8A 5ADZA 2MBRA 1MBBA 1I19A 2VAOA 3W8ZA 3AN1A 2BVHA 1VDVA 2QPMA 4ML8A 1WYGA 4EC3A 1DIQA 1AHVA 2Q85A 1VAOA 1N61C 3NRZB 5AWVA 1FFVC 3PM9A 2W3RA 3S1FA 1E0YA 1W1SA 1E8HA 5D79A 3I99A 1AHZA 3FWAA 1FFUC 3B9JB 3RJAA 4XLOA
chains in the Genus database with same CATH superfamily
2I0KA 2E3TA 4JAYA 4HG0A 4PVEA 2OAIA 1T3QC 3KJMA 2BVFA 3FW8A 3GSYA 4BBYA 2YVSA 3BW7A 5AE1A 3S1EA 4PVKA 2VFRA 1W1RA 1FIQB 5HQXA 4PWCA 2Y08A 3TSHA 1E8GA 4MLAA 2QKNA 2VFUA 5FXEA 5HMRA 3PQBA 3NVZB 1QLTA 1W1MA 2PLIA 3S1DA 1ZR6A 2UUUA 2AXRA 5I1WA 5HHZA 1DIIA 5K8EA 3NVVB 3NS1B 2Q4WA 1AHUA 5FXDA 2P4PA 4PZFA 1RM6B 1FO4A 2P13A 3W8WA 2Y3RA 4UD8A 3FW7A 4ZOHB 5G5GB 3DQ0A 2EXRA 2NQWA 4OALA 5AE3A 4JB1A 1DZNA 3TX1A 2O3GA 3VTEA 1N62C 3EJEB 3DEDA 2BVGA 4PVHA 2IPIA 2WDWA 2Y4GA 5I1VA 1MBTA 2VFSA 2VFVA 3C0PA 4PYTA 4BC9A 2PLSA 3S1CA 2W55A 2W3SA 1N5XA 1HSKA 3ETRB 1N5WC 2GQTA 2VFTA 1W1KA 3LLBA 1JROA 3LAEA 2W54A 5AE2A 2RK5A 4BCAA 3POPA 2R2ZA 1QLUA 1E8FA 1W1QA 1F0XA 3NVWB 2R8DA 3W8XA 3SR6B 1W1OA 2P3HA 3RJ8A 5L6GA 5FXPA 1W1JA 3D2DA 5FXFA 4PVJA 3AMZA 3AM9A 4DNSA 1N63C 3FW9A 2GQUA 5L6FA 4O95A 1W1LA 1V97A 3TSJA 4BC7A 1WVFA 3EUB3 4PWBA 1N60C 1ZXIC 2UUVA 1UXYA 2Y3SA 1WVEA 3HSUA 3D2JA 3D2HA 3JS8A 5ADZA 2MBRA 3NVYB 1MBBA 1I19A 2VAOA 3W8ZA 3AN1A 2BVHA 1VDVA 2QPMA 1JRPA 4ML8A 1WYGA 4EC3A 3EJDB 1DIQA 3HRDC 5G5HB 1AHVA 2Q85A 3EJBB 1VAOA 1N61C 3NRZB 5AWVA 1FFVC 3PM9A 2W3RA 3S1FA 1E0YA 1W1SA 1E8HA 5D79A 3I99A 1AHZA 3FWAA 1FFUC 3B9JB 1SB3B 3RJAA 4XLOA
chains in the Genus database with same CATH topology
2I0KA 2E3TA 4JAYA 4HG0A 4PVEA 2OAIA 1T3QC 3KJMA 2BVFA 3FW8A 3GSYA 4BBYA 2YVSA 3BW7A 5AE1A 3S1EA 4PVKA 2VFRA 1W1RA 1FIQB 5HQXA 4PWCA 2Y08A 3TSHA 1E8GA 4MLAA 2QKNA 2VFUA 5FXEA 5HMRA 3PQBA 3NVZB 1QLTA 1W1MA 2PLIA 3S1DA 1ZR6A 2UUUA 2AXRA 5I1WA 5HHZA 1DIIA 5K8EA 3NVVB 3NS1B 2Q4WA 1AHUA 5FXDA 2P4PA 4PZFA 1RM6B 1FO4A 2P13A 3W8WA 2Y3RA 4UD8A 3FW7A 4ZOHB 5G5GB 3DQ0A 2EXRA 2NQWA 4OALA 5AE3A 4JB1A 1DZNA 3TX1A 2O3GA 3VTEA 1N62C 3DEDA 2BVGA 4PVHA 2IPIA 2WDWA 2Y4GA 5I1VA 1MBTA 2VFSA 2VFVA 3C0PA 4PYTA 4BC9A 2PLSA 3S1CA 2W55A 2W3SA 1N5XA 1HSKA 3ETRB 1N5WC 2GQTA 2VFTA 1W1KA 3LLBA 1JROA 3LAEA 2W54A 5AE2A 2RK5A 4BCAA 3POPA 2R2ZA 1QLUA 1E8FA 1W1QA 1F0XA 3NVWB 2R8DA 3W8XA 3SR6B 1W1OA 2P3HA 3RJ8A 5L6GA 5FXPA 1W1JA 3D2DA 5FXFA 4PVJA 3AMZA 3AM9A 4DNSA 1N63C 3FW9A 2GQUA 5L6FA 4O95A 1W1LA 1V97A 3TSJA 4BC7A 1WVFA 3EUB3 4PWBA 1N60C 1ZXIC 2UUVA 1UXYA 2Y3SA 1WVEA 3HSUA 3D2JA 3D2HA 3JS8A 5ADZA 2MBRA 3NVYB 1MBBA 1I19A 2VAOA 3W8ZA 3AN1A 2BVHA 1VDVA 2QPMA 1JRPA 4ML8A 1WYGA 4EC3A 1DIQA 3HRDC 5G5HB 1AHVA 2Q85A 1VAOA 1N61C 3NRZB 5AWVA 1FFVC 3PM9A 2W3RA 3S1FA 1E0YA 1W1SA 1E8HA 5D79A 3I99A 1AHZA 3FWAA 1FFUC 3B9JB 1SB3B 3RJAA 4XLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I0K A;  2E3T A;  4JAY A;  4PVE A;  1T3Q C;  3KJM A;  2BVF A;  3FW8 A;  3GSY A;  4BBY A;  3BW7 A;  5AE1 A;  3S1E A;  4PVK A;  2VFR A;  1W1R A;  1FIQ B;  5HQX A;  4PWC A;  2Y08 A;  3TSH A;  1E8G A;  4MLA A;  2QKN A;  2VFU A;  5FXE A;  5HMR A;  3PQB A;  3NVZ B;  1QLT A;  1W1M A;  3S1D A;  1ZR6 A;  2AXR A;  5I1W A;  5HHZ A;  1DII A;  5K8E A;  3NS1 B;  2Q4W A;  1AHU A;  5FXD A;  4PZF A;  1FO4 A;  3W8W A;  2Y3R A;  4UD8 A;  3FW7 A;  4ZOH B;  3DQ0 A;  2EXR A;  4OAL A;  5AE3 A;  4JB1 A;  1DZN A;  3TX1 A;  3VTE A;  1N62 C;  2BVG A;  4PVH A;  2IPI A;  2WDW A;  2Y4G A;  5I1V A;  1MBT A;  2VFS A;  2VFV A;  3C0P A;  4PYT A;  4BC9 A;  3S1C A;  2W55 A;  2W3S A;  1N5X A;  1HSK A;  3ETR B;  1N5W C;  2GQT A;  2VFT A;  1W1K A;  1JRO A;  2W54 A;  5AE2 A;  4BCA A;  3POP A;  1QLU A;  1E8F A;  1W1Q A;  1F0X A;  3W8X A;  3SR6 B;  1W1O A;  3RJ8 A;  5L6G A;  5FXP A;  1W1J A;  3D2D A;  5FXF A;  4PVJ A;  3AMZ A;  3AM9 A;  4DNS A;  1N63 C;  3FW9 A;  2GQU A;  5L6F A;  4O95 A;  1W1L A;  1V97 A;  3TSJ A;  4BC7 A;  1WVF A;  3EUB 3;  4PWB A;  1N60 C;  1ZXI C;  1UXY A;  2Y3S A;  1WVE A;  3HSU A;  3D2J A;  3D2H A;  3JS8 A;  5ADZ A;  2MBR A;  1MBB A;  1I19 A;  2VAO A;  3W8Z A;  3AN1 A;  2BVH A;  1VDV A;  2QPM A;  4ML8 A;  1WYG A;  4EC3 A;  1DIQ A;  1AHV A;  2Q85 A;  1VAO A;  1N61 C;  3NRZ B;  5AWV A;  1FFV C;  3PM9 A;  2W3R A;  3S1F A;  1E0Y A;  1W1S A;  1E8H A;  5D79 A;  3I99 A;  1AHZ A;  3FWA A;  1FFU C;  3B9J B;  3RJA A;  4XLO A; 
#chains in the Genus database with same CATH topology
 2I0K A;  2E3T A;  4JAY A;  4HG0 A;  4PVE A;  2OAI A;  1T3Q C;  3KJM A;  2BVF A;  3FW8 A;  3GSY A;  4BBY A;  2YVS A;  3BW7 A;  5AE1 A;  3S1E A;  4PVK A;  2VFR A;  1W1R A;  1FIQ B;  5HQX A;  4PWC A;  2Y08 A;  3TSH A;  1E8G A;  4MLA A;  2QKN A;  2VFU A;  5FXE A;  5HMR A;  3PQB A;  3NVZ B;  1QLT A;  1W1M A;  2PLI A;  3S1D A;  1ZR6 A;  2UUU A;  2AXR A;  5I1W A;  5HHZ A;  1DII A;  5K8E A;  3NVV B;  3NS1 B;  2Q4W A;  1AHU A;  5FXD A;  2P4P A;  4PZF A;  1RM6 B;  1FO4 A;  2P13 A;  3W8W A;  2Y3R A;  4UD8 A;  3FW7 A;  4ZOH B;  5G5G B;  3DQ0 A;  2EXR A;  2NQW A;  4OAL A;  5AE3 A;  4JB1 A;  1DZN A;  3TX1 A;  2O3G A;  3VTE A;  1N62 C;  3EJE B;  3DED A;  2BVG A;  4PVH A;  2IPI A;  2WDW A;  2Y4G A;  5I1V A;  1MBT A;  2VFS A;  2VFV A;  3C0P A;  4PYT A;  4BC9 A;  2PLS A;  3S1C A;  2W55 A;  2W3S A;  1N5X A;  1HSK A;  3ETR B;  1N5W C;  2GQT A;  2VFT A;  1W1K A;  3LLB A;  1JRO A;  3LAE A;  2W54 A;  5AE2 A;  2RK5 A;  4BCA A;  3POP A;  2R2Z A;  1QLU A;  1E8F A;  1W1Q A;  1F0X A;  3NVW B;  2R8D A;  3W8X A;  3SR6 B;  1W1O A;  2P3H A;  3RJ8 A;  5L6G A;  5FXP A;  1W1J A;  3D2D A;  5FXF A;  4PVJ A;  3AMZ A;  3AM9 A;  4DNS A;  1N63 C;  3FW9 A;  2GQU A;  5L6F A;  4O95 A;  1W1L A;  1V97 A;  3TSJ A;  4BC7 A;  1WVF A;  3EUB 3;  4PWB A;  1N60 C;  1ZXI C;  2UUV A;  1UXY A;  2Y3S A;  1WVE A;  3HSU A;  3D2J A;  3D2H A;  3JS8 A;  5ADZ A;  2MBR A;  3NVY B;  1MBB A;  1I19 A;  2VAO A;  3W8Z A;  3AN1 A;  2BVH A;  1VDV A;  2QPM A;  1JRP A;  4ML8 A;  1WYG A;  4EC3 A;  3EJD B;  1DIQ A;  3HRD C;  5G5H B;  1AHV A;  2Q85 A;  3EJB B;  1VAO A;  1N61 C;  3NRZ B;  5AWV A;  1FFV C;  3PM9 A;  2W3R A;  3S1F A;  1E0Y A;  1W1S A;  1E8H A;  5D79 A;  3I99 A;  1AHZ A;  3FWA A;  1FFU C;  3B9J B;  1SB3 B;  3RJA A;  4XLO A; 
#chains in the Genus database with same CATH homology
 2I0K A;  2E3T A;  4JAY A;  4HG0 A;  4PVE A;  2OAI A;  1T3Q C;  3KJM A;  2BVF A;  3FW8 A;  3GSY A;  4BBY A;  2YVS A;  3BW7 A;  5AE1 A;  3S1E A;  4PVK A;  2VFR A;  1W1R A;  1FIQ B;  5HQX A;  4PWC A;  2Y08 A;  3TSH A;  1E8G A;  4MLA A;  2QKN A;  2VFU A;  5FXE A;  5HMR A;  3PQB A;  3NVZ B;  1QLT A;  1W1M A;  2PLI A;  3S1D A;  1ZR6 A;  2UUU A;  2AXR A;  5I1W A;  5HHZ A;  1DII A;  5K8E A;  3NVV B;  3NS1 B;  2Q4W A;  1AHU A;  5FXD A;  2P4P A;  4PZF A;  1RM6 B;  1FO4 A;  2P13 A;  3W8W A;  2Y3R A;  4UD8 A;  3FW7 A;  4ZOH B;  5G5G B;  3DQ0 A;  2EXR A;  2NQW A;  4OAL A;  5AE3 A;  4JB1 A;  1DZN A;  3TX1 A;  2O3G A;  3VTE A;  1N62 C;  3DED A;  2BVG A;  4PVH A;  2IPI A;  2WDW A;  2Y4G A;  5I1V A;  1MBT A;  2VFS A;  2VFV A;  3C0P A;  4PYT A;  4BC9 A;  2PLS A;  3S1C A;  2W55 A;  2W3S A;  1N5X A;  1HSK A;  3ETR B;  1N5W C;  2GQT A;  2VFT A;  1W1K A;  3LLB A;  1JRO A;  3LAE A;  2W54 A;  5AE2 A;  2RK5 A;  4BCA A;  3POP A;  2R2Z A;  1QLU A;  1E8F A;  1W1Q A;  1F0X A;  3NVW B;  2R8D A;  3W8X A;  3SR6 B;  1W1O A;  2P3H A;  3RJ8 A;  5L6G A;  5FXP A;  1W1J A;  3D2D A;  5FXF A;  4PVJ A;  3AMZ A;  3AM9 A;  4DNS A;  1N63 C;  3FW9 A;  2GQU A;  5L6F A;  4O95 A;  1W1L A;  1V97 A;  3TSJ A;  4BC7 A;  1WVF A;  3EUB 3;  4PWB A;  1N60 C;  1ZXI C;  2UUV A;  1UXY A;  2Y3S A;  1WVE A;  3HSU A;  3D2J A;  3D2H A;  3JS8 A;  5ADZ A;  2MBR A;  3NVY B;  1MBB A;  1I19 A;  2VAO A;  3W8Z A;  3AN1 A;  2BVH A;  1VDV A;  2QPM A;  1JRP A;  4ML8 A;  1WYG A;  4EC3 A;  1DIQ A;  3HRD C;  5G5H B;  1AHV A;  2Q85 A;  1VAO A;  1N61 C;  3NRZ B;  5AWV A;  1FFV C;  3PM9 A;  2W3R A;  3S1F A;  1E0Y A;  1W1S A;  1E8H A;  5D79 A;  3I99 A;  1AHZ A;  3FWA A;  1FFU C;  3B9J B;  1SB3 B;  3RJA A;  4XLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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