4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
2AXRA 4JAYA 1ZR6A 1W1KA 3W8ZA 1N62C 3D2DA 5FXFA 3RJ8A 1AHUA 1W1QA 4EC3A 4PVKA 3PQBA 1WYGA 2QPMA 3NRZB 3POPA 1JROA 1DIIA 1FFUC 1W1JA 1ZXIC 2VFTA 4PWBA 3SR6B 2W54A 5FXEA 1FFVC 4OALA 5HQXA 2Y3RA 5ADZA 2E3TA 2W3RA 2EXRA 3FW8A 3KJMA 1N5XA 5L6FA 3TSJA 3ETRB 1E8FA 1WVEA 1AHZA 1VDVA 4PVEA 1W1OA 1MBBA 5AE2A 4PWCA 3NS1B 2Y08A 3D2JA 3EUB3 5L6GA 5K8EA 1V97A 3FWAA 4BC7A 4PVHA 2Q4WA 3AM9A 1FO4A 2W3SA 3GSYA 3D2HA 4BCAA 2GQUA 3TSHA 1W1RA 3FW9A 4PYTA 4UD8A 4PVJA 5FXPA 1HSKA 3W8WA 3S1EA 3RJAA 4DNSA 4ZOHB 2Q85A 3VTEA 4JB1A 1F0XA 1W1MA 1WVFA 5AE1A 2Y4GA 3W8XA 1QLTA 1W1SA 3JS8A 1N5WC 2W55A 4BC9A 3AMZA 2I0KA 5HMRA 1DIQA 2BVHA 3NVZB 4MLAA 4PZFA 3TX1A 2WDWA 1W1LA 1E8GA 1AHVA 1VAOA 3S1CA 2BVGA 1N61C 1DZNA 1QLUA 4XLOA 1E8HA 2VFSA 4BBYA 3AN1A 4ML8A 4O95A 2VFVA 2QKNA 2BVFA 2VFRA 2GQTA 5I1VA 3BW7A 3FW7A 3HSUA 5FXDA 5AE3A 1MBTA 3S1FA 1UXYA 3C0PA 1N63C 1T3QC 3B9JB 3DQ0A 1I19A 2VAOA 5I1WA 1N60C 3I99A 2IPIA 2MBRA 2VFUA 5AWVA 5D79A 3PM9A 2Y3SA 1E0YA 1FIQB 5HHZA 3S1DA
chains in the Genus database with same CATH superfamily
2AXRA 3EJBB 4JAYA 1ZR6A 1W1KA 3W8ZA 1N62C 3D2DA 5FXFA 2OAIA 3RJ8A 1AHUA 1W1QA 4EC3A 4PVKA 3PQBA 1WYGA 2P4PA 2YVSA 2QPMA 3DEDA 3NRZB 3POPA 2UUVA 1JROA 1DIIA 1FFUC 2P3HA 4HG0A 1W1JA 1ZXIC 2VFTA 4PWBA 3SR6B 2W54A 5FXEA 1FFVC 3EJEB 4OALA 5HQXA 2P13A 2Y3RA 5ADZA 2E3TA 2W3RA 2EXRA 3FW8A 3KJMA 1N5XA 5L6FA 3TSJA 3ETRB 1E8FA 1WVEA 1AHZA 1VDVA 4PVEA 1W1OA 1MBBA 5AE2A 4PWCA 2PLSA 3NS1B 2Y08A 3D2JA 3EUB3 5L6GA 5K8EA 5G5GB 1V97A 3FWAA 4BC7A 4PVHA 2Q4WA 3AM9A 1FO4A 2W3SA 3EJDB 2O3GA 3GSYA 3D2HA 4BCAA 2GQUA 3NVWB 3TSHA 1W1RA 2RK5A 3FW9A 3NVVB 4PYTA 4UD8A 4PVJA 5FXPA 1HSKA 3W8WA 3S1EA 3RJAA 4DNSA 4ZOHB 2Q85A 2R2ZA 3VTEA 4JB1A 1F0XA 1W1MA 2PLIA 1WVFA 5AE1A 2Y4GA 3W8XA 1QLTA 1W1SA 3JS8A 1N5WC 2W55A 4BC9A 3AMZA 3LAEA 2I0KA 5HMRA 1DIQA 2BVHA 3NVZB 4MLAA 4PZFA 3TX1A 2WDWA 1W1LA 1E8GA 1AHVA 1VAOA 3S1CA 2BVGA 1JRPA 1N61C 3HRDC 1DZNA 1QLUA 4XLOA 1E8HA 2VFSA 4BBYA 3AN1A 4ML8A 4O95A 2VFVA 3LLBA 2QKNA 2BVFA 2VFRA 2GQTA 5I1VA 3BW7A 3FW7A 3HSUA 1RM6B 5FXDA 5AE3A 1MBTA 3S1FA 1UXYA 2NQWA 5G5HB 3NVYB 3C0PA 1N63C 1T3QC 3B9JB 3DQ0A 1I19A 2VAOA 1SB3B 2UUUA 5I1WA 1N60C 3I99A 2IPIA 2MBRA 2VFUA 5AWVA 5D79A 3PM9A 2Y3SA 2R8DA 1E0YA 1FIQB 5HHZA 3S1DA
chains in the Genus database with same CATH topology
2AXRA 4JAYA 1ZR6A 1W1KA 3W8ZA 1N62C 3D2DA 5FXFA 2OAIA 3RJ8A 1AHUA 1W1QA 4EC3A 4PVKA 3PQBA 1WYGA 2P4PA 2YVSA 2QPMA 3DEDA 3NRZB 3POPA 2UUVA 1JROA 1DIIA 1FFUC 2P3HA 4HG0A 1W1JA 1ZXIC 2VFTA 4PWBA 3SR6B 2W54A 5FXEA 1FFVC 4OALA 5HQXA 2P13A 2Y3RA 5ADZA 2E3TA 2W3RA 2EXRA 3FW8A 3KJMA 1N5XA 5L6FA 3TSJA 3ETRB 1E8FA 1WVEA 1AHZA 1VDVA 4PVEA 1W1OA 1MBBA 5AE2A 4PWCA 2PLSA 3NS1B 2Y08A 3D2JA 3EUB3 5L6GA 5K8EA 5G5GB 1V97A 3FWAA 4BC7A 4PVHA 2Q4WA 3AM9A 1FO4A 2W3SA 2O3GA 3GSYA 3D2HA 4BCAA 2GQUA 3NVWB 3TSHA 1W1RA 2RK5A 3FW9A 4PYTA 4UD8A 3NVVB 4PVJA 5FXPA 1HSKA 3W8WA 3S1EA 3RJAA 4DNSA 4ZOHB 2Q85A 2R2ZA 3VTEA 4JB1A 1F0XA 1W1MA 2PLIA 1WVFA 5AE1A 2Y4GA 3W8XA 1QLTA 1W1SA 3JS8A 1N5WC 2W55A 4BC9A 3AMZA 3LAEA 2I0KA 5HMRA 1DIQA 2BVHA 3NVZB 4MLAA 4PZFA 3TX1A 2WDWA 1W1LA 1E8GA 1AHVA 1VAOA 3S1CA 2BVGA 1JRPA 1N61C 3HRDC 1DZNA 1QLUA 4XLOA 1E8HA 2VFSA 4BBYA 3AN1A 4ML8A 4O95A 2VFVA 3LLBA 2QKNA 2BVFA 2VFRA 2GQTA 5I1VA 3BW7A 3FW7A 3HSUA 1RM6B 5FXDA 5AE3A 1MBTA 3S1FA 1UXYA 2NQWA 5G5HB 3NVYB 3C0PA 1N63C 1T3QC 3B9JB 3DQ0A 1I19A 2VAOA 1SB3B 2UUUA 5I1WA 1N60C 3I99A 2IPIA 2MBRA 2VFUA 5AWVA 5D79A 3PM9A 2Y3SA 2R8DA 1E0YA 1FIQB 5HHZA 3S1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AXR A;  4JAY A;  1ZR6 A;  1W1K A;  3W8Z A;  1N62 C;  3D2D A;  5FXF A;  3RJ8 A;  1AHU A;  1W1Q A;  4EC3 A;  4PVK A;  3PQB A;  1WYG A;  2QPM A;  3NRZ B;  3POP A;  1JRO A;  1DII A;  1FFU C;  1W1J A;  1ZXI C;  2VFT A;  4PWB A;  3SR6 B;  2W54 A;  5FXE A;  1FFV C;  4OAL A;  5HQX A;  2Y3R A;  5ADZ A;  2E3T A;  2W3R A;  2EXR A;  3FW8 A;  3KJM A;  1N5X A;  5L6F A;  3TSJ A;  3ETR B;  1E8F A;  1WVE A;  1AHZ A;  1VDV A;  4PVE A;  1W1O A;  1MBB A;  5AE2 A;  4PWC A;  3NS1 B;  2Y08 A;  3D2J A;  3EUB 3;  5L6G A;  5K8E A;  1V97 A;  3FWA A;  4BC7 A;  4PVH A;  2Q4W A;  3AM9 A;  1FO4 A;  2W3S A;  3GSY A;  3D2H A;  4BCA A;  2GQU A;  3TSH A;  1W1R A;  3FW9 A;  4PYT A;  4UD8 A;  4PVJ A;  5FXP A;  1HSK A;  3W8W A;  3S1E A;  3RJA A;  4DNS A;  4ZOH B;  2Q85 A;  3VTE A;  4JB1 A;  1F0X A;  1W1M A;  1WVF A;  5AE1 A;  2Y4G A;  3W8X A;  1QLT A;  1W1S A;  3JS8 A;  1N5W C;  2W55 A;  4BC9 A;  3AMZ A;  2I0K A;  5HMR A;  1DIQ A;  2BVH A;  3NVZ B;  4MLA A;  4PZF A;  3TX1 A;  2WDW A;  1W1L A;  1E8G A;  1AHV A;  1VAO A;  3S1C A;  2BVG A;  1N61 C;  1DZN A;  1QLU A;  4XLO A;  1E8H A;  2VFS A;  4BBY A;  3AN1 A;  4ML8 A;  4O95 A;  2VFV A;  2QKN A;  2BVF A;  2VFR A;  2GQT A;  5I1V A;  3BW7 A;  3FW7 A;  3HSU A;  5FXD A;  5AE3 A;  1MBT A;  3S1F A;  1UXY A;  3C0P A;  1N63 C;  1T3Q C;  3B9J B;  3DQ0 A;  1I19 A;  2VAO A;  5I1W A;  1N60 C;  3I99 A;  2IPI A;  2MBR A;  2VFU A;  5AWV A;  5D79 A;  3PM9 A;  2Y3S A;  1E0Y A;  1FIQ B;  5HHZ A;  3S1D A; 
#chains in the Genus database with same CATH topology
 2AXR A;  3EJB B;  4JAY A;  1ZR6 A;  1W1K A;  3W8Z A;  1N62 C;  3D2D A;  5FXF A;  2OAI A;  3RJ8 A;  1AHU A;  1W1Q A;  4EC3 A;  4PVK A;  3PQB A;  1WYG A;  2P4P A;  2YVS A;  2QPM A;  3DED A;  3NRZ B;  3POP A;  2UUV A;  1JRO A;  1DII A;  1FFU C;  2P3H A;  4HG0 A;  1W1J A;  1ZXI C;  2VFT A;  4PWB A;  3SR6 B;  2W54 A;  5FXE A;  1FFV C;  3EJE B;  4OAL A;  5HQX A;  2P13 A;  2Y3R A;  5ADZ A;  2E3T A;  2W3R A;  2EXR A;  3FW8 A;  3KJM A;  1N5X A;  5L6F A;  3TSJ A;  3ETR B;  1E8F A;  1WVE A;  1AHZ A;  1VDV A;  4PVE A;  1W1O A;  1MBB A;  5AE2 A;  4PWC A;  2PLS A;  3NS1 B;  2Y08 A;  3D2J A;  3EUB 3;  5L6G A;  5K8E A;  5G5G B;  1V97 A;  3FWA A;  4BC7 A;  4PVH A;  2Q4W A;  3AM9 A;  1FO4 A;  2W3S A;  3EJD B;  2O3G A;  3GSY A;  3D2H A;  4BCA A;  2GQU A;  3NVW B;  3TSH A;  1W1R A;  2RK5 A;  3FW9 A;  3NVV B;  4PYT A;  4UD8 A;  4PVJ A;  5FXP A;  1HSK A;  3W8W A;  3S1E A;  3RJA A;  4DNS A;  4ZOH B;  2Q85 A;  2R2Z A;  3VTE A;  4JB1 A;  1F0X A;  1W1M A;  2PLI A;  1WVF A;  5AE1 A;  2Y4G A;  3W8X A;  1QLT A;  1W1S A;  3JS8 A;  1N5W C;  2W55 A;  4BC9 A;  3AMZ A;  3LAE A;  2I0K A;  5HMR A;  1DIQ A;  2BVH A;  3NVZ B;  4MLA A;  4PZF A;  3TX1 A;  2WDW A;  1W1L A;  1E8G A;  1AHV A;  1VAO A;  3S1C A;  2BVG A;  1JRP A;  1N61 C;  3HRD C;  1DZN A;  1QLU A;  4XLO A;  1E8H A;  2VFS A;  4BBY A;  3AN1 A;  4ML8 A;  4O95 A;  2VFV A;  3LLB A;  2QKN A;  2BVF A;  2VFR A;  2GQT A;  5I1V A;  3BW7 A;  3FW7 A;  3HSU A;  1RM6 B;  5FXD A;  5AE3 A;  1MBT A;  3S1F A;  1UXY A;  2NQW A;  5G5H B;  3NVY B;  3C0P A;  1N63 C;  1T3Q C;  3B9J B;  3DQ0 A;  1I19 A;  2VAO A;  1SB3 B;  2UUU A;  5I1W A;  1N60 C;  3I99 A;  2IPI A;  2MBR A;  2VFU A;  5AWV A;  5D79 A;  3PM9 A;  2Y3S A;  2R8D A;  1E0Y A;  1FIQ B;  5HHZ A;  3S1D A; 
#chains in the Genus database with same CATH homology
 2AXR A;  4JAY A;  1ZR6 A;  1W1K A;  3W8Z A;  1N62 C;  3D2D A;  5FXF A;  2OAI A;  3RJ8 A;  1AHU A;  1W1Q A;  4EC3 A;  4PVK A;  3PQB A;  1WYG A;  2P4P A;  2YVS A;  2QPM A;  3DED A;  3NRZ B;  3POP A;  2UUV A;  1JRO A;  1DII A;  1FFU C;  2P3H A;  4HG0 A;  1W1J A;  1ZXI C;  2VFT A;  4PWB A;  3SR6 B;  2W54 A;  5FXE A;  1FFV C;  4OAL A;  5HQX A;  2P13 A;  2Y3R A;  5ADZ A;  2E3T A;  2W3R A;  2EXR A;  3FW8 A;  3KJM A;  1N5X A;  5L6F A;  3TSJ A;  3ETR B;  1E8F A;  1WVE A;  1AHZ A;  1VDV A;  4PVE A;  1W1O A;  1MBB A;  5AE2 A;  4PWC A;  2PLS A;  3NS1 B;  2Y08 A;  3D2J A;  3EUB 3;  5L6G A;  5K8E A;  5G5G B;  1V97 A;  3FWA A;  4BC7 A;  4PVH A;  2Q4W A;  3AM9 A;  1FO4 A;  2W3S A;  2O3G A;  3GSY A;  3D2H A;  4BCA A;  2GQU A;  3NVW B;  3TSH A;  1W1R A;  2RK5 A;  3FW9 A;  4PYT A;  4UD8 A;  3NVV B;  4PVJ A;  5FXP A;  1HSK A;  3W8W A;  3S1E A;  3RJA A;  4DNS A;  4ZOH B;  2Q85 A;  2R2Z A;  3VTE A;  4JB1 A;  1F0X A;  1W1M A;  2PLI A;  1WVF A;  5AE1 A;  2Y4G A;  3W8X A;  1QLT A;  1W1S A;  3JS8 A;  1N5W C;  2W55 A;  4BC9 A;  3AMZ A;  3LAE A;  2I0K A;  5HMR A;  1DIQ A;  2BVH A;  3NVZ B;  4MLA A;  4PZF A;  3TX1 A;  2WDW A;  1W1L A;  1E8G A;  1AHV A;  1VAO A;  3S1C A;  2BVG A;  1JRP A;  1N61 C;  3HRD C;  1DZN A;  1QLU A;  4XLO A;  1E8H A;  2VFS A;  4BBY A;  3AN1 A;  4ML8 A;  4O95 A;  2VFV A;  3LLB A;  2QKN A;  2BVF A;  2VFR A;  2GQT A;  5I1V A;  3BW7 A;  3FW7 A;  3HSU A;  1RM6 B;  5FXD A;  5AE3 A;  1MBT A;  3S1F A;  1UXY A;  2NQW A;  5G5H B;  3NVY B;  3C0P A;  1N63 C;  1T3Q C;  3B9J B;  3DQ0 A;  1I19 A;  2VAO A;  1SB3 B;  2UUU A;  5I1W A;  1N60 C;  3I99 A;  2IPI A;  2MBR A;  2VFU A;  5AWV A;  5D79 A;  3PM9 A;  2Y3S A;  2R8D A;  1E0Y A;  1FIQ B;  5HHZ A;  3S1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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