4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
5AE3A 2BVGA 2AXRA 1E8HA 4BC9A 3POPA 2Y3SA 2VFRA 3B9JB 1W1LA 2BVHA 4XLOA 2W55A 3S1EA 5L6FA 5FXDA 1AHZA 3TSHA 3JS8A 3FW9A 4ZOHB 1DZNA 4ML8A 3TSJA 3VTEA 5HQXA 1FFVC 5AE1A 5I1VA 1FO4A 1W1KA 3W8XA 2EXRA 1JROA 2Q4WA 1DIQA 1WVFA 3TX1A 2VFUA 4DNSA 3S1CA 2W3RA 1ZR6A 3KJMA 3RJ8A 2VFVA 3D2HA 5FXEA 1V97A 1N5XA 5I1WA 2Q85A 1W1SA 1WVEA 1WYGA 3I99A 3S1DA 1MBTA 4PVEA 3SR6B 4UD8A 1UXYA 1W1JA 5AWVA 1DIIA 4MLAA 1W1MA 2W3SA 1N62C 3AM9A 3EUB3 4O95A 4PZFA 1VAOA 1E0YA 1FFUC 4JB1A 3GSYA 3DQ0A 1N63C 2QPMA 1MBBA 2WDWA 4BCAA 1N61C 1QLTA 2VFSA 5FXFA 3FW8A 1E8GA 2Y3RA 1W1RA 3D2DA 3S1FA 5HHZA 2IPIA 1W1QA 5HMRA 1I19A 1W1OA 3PM9A 5L6GA 3FW7A 3AN1A 2VAOA 1QLUA 3PQBA 3C0PA 1VDVA 5FXPA 1N5WC 4JAYA 4BC7A 3NVZB 2Y08A 1F0XA 1T3QC 4PVHA 5D79A 1AHVA 2I0KA 2Y4GA 4OALA 3W8ZA 3BW7A 2BVFA 2VFTA 2W54A 1FIQB 4PVKA 1ZXIC 3AMZA 5AE2A 3RJAA 5K8EA 1E8FA 3NS1B 1N60C 3W8WA 2GQTA 4PYTA 4PVJA 1AHUA 3HSUA 3FWAA 2MBRA 2E3TA 3NRZB 3ETRB 2GQUA 4BBYA 4PWBA 4PWCA 5ADZA 4EC3A 3D2JA 1HSKA 2QKNA
chains in the Genus database with same CATH superfamily
5AE3A 2BVGA 2AXRA 1E8HA 4BC9A 3POPA 2Y3SA 2VFRA 3B9JB 2YVSA 1W1LA 2BVHA 4XLOA 2W55A 3S1EA 5L6FA 5FXDA 1AHZA 3TSHA 3JS8A 3FW9A 4ZOHB 1DZNA 4ML8A 3NVVB 2O3GA 3EJDB 2R2ZA 3TSJA 1SB3B 3VTEA 5HQXA 2UUUA 1FFVC 2OAIA 5AE1A 5I1VA 1FO4A 1W1KA 2UUVA 3W8XA 2EXRA 1JROA 2Q4WA 1DIQA 2PLSA 3DEDA 1WVFA 3TX1A 2VFUA 4DNSA 3S1CA 2W3RA 1ZR6A 3KJMA 3RJ8A 2VFVA 3D2HA 5FXEA 1RM6B 1V97A 1N5XA 5I1WA 2Q85A 1W1SA 1WVEA 1WYGA 3I99A 3S1DA 1MBTA 4PVEA 3SR6B 4UD8A 1UXYA 1W1JA 5AWVA 1DIIA 4MLAA 1W1MA 2W3SA 1N62C 2R8DA 3AM9A 3EUB3 4O95A 3NVWB 4PZFA 1VAOA 1E0YA 1FFUC 2P4PA 4JB1A 3GSYA 3DQ0A 1N63C 2QPMA 1MBBA 2WDWA 4BCAA 1N61C 1QLTA 2VFSA 5FXFA 2NQWA 3FW8A 1E8GA 2Y3RA 3LLBA 1W1RA 3D2DA 3S1FA 5HHZA 2IPIA 1W1QA 5HMRA 1I19A 1W1OA 3PM9A 5L6GA 3EJBB 3AN1A 2VAOA 1QLUA 3FW7A 5G5HB 3PQBA 3C0PA 2P13A 1VDVA 4HG0A 5FXPA 1N5WC 2PLIA 4JAYA 4BC7A 3NVZB 2Y08A 1F0XA 1T3QC 4PVHA 5D79A 1AHVA 2I0KA 2Y4GA 4OALA 2P3HA 3LAEA 3W8ZA 3BW7A 3HRDC 2BVFA 3NVYB 2VFTA 2W54A 1FIQB 4PVKA 1ZXIC 3AMZA 5G5GB 5AE2A 3RJAA 5K8EA 1E8FA 3NS1B 1N60C 3W8WA 2GQTA 4PYTA 4PVJA 1AHUA 3HSUA 3FWAA 3EJEB 2MBRA 2E3TA 3NRZB 3ETRB 2GQUA 4BBYA 4PWBA 2RK5A 4PWCA 1JRPA 5ADZA 4EC3A 3D2JA 1HSKA 2QKNA
chains in the Genus database with same CATH topology
5AE3A 2BVGA 2AXRA 1E8HA 4BC9A 3POPA 2Y3SA 2VFRA 3B9JB 2YVSA 1W1LA 2BVHA 4XLOA 2W55A 3S1EA 5L6FA 5FXDA 1AHZA 3TSHA 3JS8A 3FW9A 4ZOHB 1DZNA 4ML8A 2O3GA 3NVVB 2R2ZA 3TSJA 1SB3B 3VTEA 5HQXA 2UUUA 1FFVC 2OAIA 5AE1A 5I1VA 1FO4A 1W1KA 2UUVA 3W8XA 2EXRA 1JROA 2Q4WA 1DIQA 2PLSA 3DEDA 1WVFA 3TX1A 2VFUA 4DNSA 3S1CA 2W3RA 1ZR6A 3KJMA 3RJ8A 2VFVA 3D2HA 5FXEA 1RM6B 1V97A 1N5XA 5I1WA 2Q85A 1W1SA 1WVEA 1WYGA 3I99A 3S1DA 1MBTA 4PVEA 3SR6B 4UD8A 1UXYA 1W1JA 5AWVA 1DIIA 4MLAA 1W1MA 2W3SA 1N62C 2R8DA 3AM9A 3EUB3 4O95A 3NVWB 4PZFA 1VAOA 1E0YA 1FFUC 2P4PA 4JB1A 3GSYA 3DQ0A 1N63C 2QPMA 1MBBA 2WDWA 4BCAA 1N61C 1QLTA 2VFSA 5FXFA 2NQWA 3FW8A 1E8GA 2Y3RA 3LLBA 1W1RA 3D2DA 3S1FA 5HHZA 2IPIA 1W1QA 5HMRA 1I19A 1W1OA 3PM9A 5L6GA 3FW7A 3AN1A 2VAOA 1QLUA 5G5HB 3PQBA 3C0PA 2P13A 1VDVA 4HG0A 5FXPA 1N5WC 2PLIA 4JAYA 4BC7A 3NVZB 2Y08A 1F0XA 1T3QC 4PVHA 5D79A 1AHVA 2I0KA 2Y4GA 4OALA 2P3HA 3LAEA 3W8ZA 3BW7A 3HRDC 2BVFA 3NVYB 2VFTA 2W54A 1FIQB 4PVKA 1ZXIC 3AMZA 5G5GB 5AE2A 3RJAA 5K8EA 1E8FA 3NS1B 1N60C 3W8WA 2GQTA 4PYTA 4PVJA 1AHUA 3HSUA 3FWAA 2MBRA 2E3TA 3NRZB 3ETRB 2GQUA 4BBYA 4PWBA 2RK5A 4PWCA 1JRPA 5ADZA 4EC3A 3D2JA 1HSKA 2QKNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AE3 A;  2BVG A;  2AXR A;  1E8H A;  4BC9 A;  3POP A;  2Y3S A;  2VFR A;  3B9J B;  1W1L A;  2BVH A;  4XLO A;  2W55 A;  3S1E A;  5L6F A;  5FXD A;  1AHZ A;  3TSH A;  3JS8 A;  3FW9 A;  4ZOH B;  1DZN A;  4ML8 A;  3TSJ A;  3VTE A;  5HQX A;  1FFV C;  5AE1 A;  5I1V A;  1FO4 A;  1W1K A;  3W8X A;  2EXR A;  1JRO A;  2Q4W A;  1DIQ A;  1WVF A;  3TX1 A;  2VFU A;  4DNS A;  3S1C A;  2W3R A;  1ZR6 A;  3KJM A;  3RJ8 A;  2VFV A;  3D2H A;  5FXE A;  1V97 A;  1N5X A;  5I1W A;  2Q85 A;  1W1S A;  1WVE A;  1WYG A;  3I99 A;  3S1D A;  1MBT A;  4PVE A;  3SR6 B;  4UD8 A;  1UXY A;  1W1J A;  5AWV A;  1DII A;  4MLA A;  1W1M A;  2W3S A;  1N62 C;  3AM9 A;  3EUB 3;  4O95 A;  4PZF A;  1VAO A;  1E0Y A;  1FFU C;  4JB1 A;  3GSY A;  3DQ0 A;  1N63 C;  2QPM A;  1MBB A;  2WDW A;  4BCA A;  1N61 C;  1QLT A;  2VFS A;  5FXF A;  3FW8 A;  1E8G A;  2Y3R A;  1W1R A;  3D2D A;  3S1F A;  5HHZ A;  2IPI A;  1W1Q A;  5HMR A;  1I19 A;  1W1O A;  3PM9 A;  5L6G A;  3FW7 A;  3AN1 A;  2VAO A;  1QLU A;  3PQB A;  3C0P A;  1VDV A;  5FXP A;  1N5W C;  4JAY A;  4BC7 A;  3NVZ B;  2Y08 A;  1F0X A;  1T3Q C;  4PVH A;  5D79 A;  1AHV A;  2I0K A;  2Y4G A;  4OAL A;  3W8Z A;  3BW7 A;  2BVF A;  2VFT A;  2W54 A;  1FIQ B;  4PVK A;  1ZXI C;  3AMZ A;  5AE2 A;  3RJA A;  5K8E A;  1E8F A;  3NS1 B;  1N60 C;  3W8W A;  2GQT A;  4PYT A;  4PVJ A;  1AHU A;  3HSU A;  3FWA A;  2MBR A;  2E3T A;  3NRZ B;  3ETR B;  2GQU A;  4BBY A;  4PWB A;  4PWC A;  5ADZ A;  4EC3 A;  3D2J A;  1HSK A;  2QKN A; 
#chains in the Genus database with same CATH topology
 5AE3 A;  2BVG A;  2AXR A;  1E8H A;  4BC9 A;  3POP A;  2Y3S A;  2VFR A;  3B9J B;  2YVS A;  1W1L A;  2BVH A;  4XLO A;  2W55 A;  3S1E A;  5L6F A;  5FXD A;  1AHZ A;  3TSH A;  3JS8 A;  3FW9 A;  4ZOH B;  1DZN A;  4ML8 A;  3NVV B;  2O3G A;  3EJD B;  2R2Z A;  3TSJ A;  1SB3 B;  3VTE A;  5HQX A;  2UUU A;  1FFV C;  2OAI A;  5AE1 A;  5I1V A;  1FO4 A;  1W1K A;  2UUV A;  3W8X A;  2EXR A;  1JRO A;  2Q4W A;  1DIQ A;  2PLS A;  3DED A;  1WVF A;  3TX1 A;  2VFU A;  4DNS A;  3S1C A;  2W3R A;  1ZR6 A;  3KJM A;  3RJ8 A;  2VFV A;  3D2H A;  5FXE A;  1RM6 B;  1V97 A;  1N5X A;  5I1W A;  2Q85 A;  1W1S A;  1WVE A;  1WYG A;  3I99 A;  3S1D A;  1MBT A;  4PVE A;  3SR6 B;  4UD8 A;  1UXY A;  1W1J A;  5AWV A;  1DII A;  4MLA A;  1W1M A;  2W3S A;  1N62 C;  2R8D A;  3AM9 A;  3EUB 3;  4O95 A;  3NVW B;  4PZF A;  1VAO A;  1E0Y A;  1FFU C;  2P4P A;  4JB1 A;  3GSY A;  3DQ0 A;  1N63 C;  2QPM A;  1MBB A;  2WDW A;  4BCA A;  1N61 C;  1QLT A;  2VFS A;  5FXF A;  2NQW A;  3FW8 A;  1E8G A;  2Y3R A;  3LLB A;  1W1R A;  3D2D A;  3S1F A;  5HHZ A;  2IPI A;  1W1Q A;  5HMR A;  1I19 A;  1W1O A;  3PM9 A;  5L6G A;  3EJB B;  3AN1 A;  2VAO A;  1QLU A;  3FW7 A;  5G5H B;  3PQB A;  3C0P A;  2P13 A;  1VDV A;  4HG0 A;  5FXP A;  1N5W C;  2PLI A;  4JAY A;  4BC7 A;  3NVZ B;  2Y08 A;  1F0X A;  1T3Q C;  4PVH A;  5D79 A;  1AHV A;  2I0K A;  2Y4G A;  4OAL A;  2P3H A;  3LAE A;  3W8Z A;  3BW7 A;  3HRD C;  2BVF A;  3NVY B;  2VFT A;  2W54 A;  1FIQ B;  4PVK A;  1ZXI C;  3AMZ A;  5G5G B;  5AE2 A;  3RJA A;  5K8E A;  1E8F A;  3NS1 B;  1N60 C;  3W8W A;  2GQT A;  4PYT A;  4PVJ A;  1AHU A;  3HSU A;  3FWA A;  3EJE B;  2MBR A;  2E3T A;  3NRZ B;  3ETR B;  2GQU A;  4BBY A;  4PWB A;  2RK5 A;  4PWC A;  1JRP A;  5ADZ A;  4EC3 A;  3D2J A;  1HSK A;  2QKN A; 
#chains in the Genus database with same CATH homology
 5AE3 A;  2BVG A;  2AXR A;  1E8H A;  4BC9 A;  3POP A;  2Y3S A;  2VFR A;  3B9J B;  2YVS A;  1W1L A;  2BVH A;  4XLO A;  2W55 A;  3S1E A;  5L6F A;  5FXD A;  1AHZ A;  3TSH A;  3JS8 A;  3FW9 A;  4ZOH B;  1DZN A;  4ML8 A;  2O3G A;  3NVV B;  2R2Z A;  3TSJ A;  1SB3 B;  3VTE A;  5HQX A;  2UUU A;  1FFV C;  2OAI A;  5AE1 A;  5I1V A;  1FO4 A;  1W1K A;  2UUV A;  3W8X A;  2EXR A;  1JRO A;  2Q4W A;  1DIQ A;  2PLS A;  3DED A;  1WVF A;  3TX1 A;  2VFU A;  4DNS A;  3S1C A;  2W3R A;  1ZR6 A;  3KJM A;  3RJ8 A;  2VFV A;  3D2H A;  5FXE A;  1RM6 B;  1V97 A;  1N5X A;  5I1W A;  2Q85 A;  1W1S A;  1WVE A;  1WYG A;  3I99 A;  3S1D A;  1MBT A;  4PVE A;  3SR6 B;  4UD8 A;  1UXY A;  1W1J A;  5AWV A;  1DII A;  4MLA A;  1W1M A;  2W3S A;  1N62 C;  2R8D A;  3AM9 A;  3EUB 3;  4O95 A;  3NVW B;  4PZF A;  1VAO A;  1E0Y A;  1FFU C;  2P4P A;  4JB1 A;  3GSY A;  3DQ0 A;  1N63 C;  2QPM A;  1MBB A;  2WDW A;  4BCA A;  1N61 C;  1QLT A;  2VFS A;  5FXF A;  2NQW A;  3FW8 A;  1E8G A;  2Y3R A;  3LLB A;  1W1R A;  3D2D A;  3S1F A;  5HHZ A;  2IPI A;  1W1Q A;  5HMR A;  1I19 A;  1W1O A;  3PM9 A;  5L6G A;  3FW7 A;  3AN1 A;  2VAO A;  1QLU A;  5G5H B;  3PQB A;  3C0P A;  2P13 A;  1VDV A;  4HG0 A;  5FXP A;  1N5W C;  2PLI A;  4JAY A;  4BC7 A;  3NVZ B;  2Y08 A;  1F0X A;  1T3Q C;  4PVH A;  5D79 A;  1AHV A;  2I0K A;  2Y4G A;  4OAL A;  2P3H A;  3LAE A;  3W8Z A;  3BW7 A;  3HRD C;  2BVF A;  3NVY B;  2VFT A;  2W54 A;  1FIQ B;  4PVK A;  1ZXI C;  3AMZ A;  5G5G B;  5AE2 A;  3RJA A;  5K8E A;  1E8F A;  3NS1 B;  1N60 C;  3W8W A;  2GQT A;  4PYT A;  4PVJ A;  1AHU A;  3HSU A;  3FWA A;  2MBR A;  2E3T A;  3NRZ B;  3ETR B;  2GQU A;  4BBY A;  4PWB A;  2RK5 A;  4PWC A;  1JRP A;  5ADZ A;  4EC3 A;  3D2J A;  1HSK A;  2QKN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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