4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
2BVGA 4PWCA 3VTEA 5HQXA 2W3SA 1DZNA 1HSKA 3HSUA 2VFRA 1N5XA 4PZFA 3NS1B 1FFVC 1DIIA 1W1SA 4BCAA 3S1EA 1MBBA 3KJMA 1ZR6A 2Y3SA 3B9JB 2Y3RA 2W3RA 3D2HA 1E8FA 3AN1A 1W1OA 3PQBA 5I1WA 3TSHA 4EC3A 2Y4GA 2W55A 4BBYA 2GQUA 1JROA 4ZOHB 3PM9A 2AXRA 2QPMA 2Y08A 4UD8A 2WDWA 1AHVA 1W1JA 4ML8A 5AE3A 1MBTA 5HMRA 1FIQB 3ETRB 2QKNA 3W8ZA 1N61C 3FW7A 5AWVA 2GQTA 4OALA 3I99A 1UXYA 1FFUC 4DNSA 2BVFA 1AHUA 3AMZA 4JB1A 3FWAA 4PVJA 1E0YA 2Q4WA 1AHZA 5I1VA 1WYGA 5ADZA 1QLUA 3FW9A 4PWBA 3RJAA 5L6FA 2VFTA 2BVHA 3S1CA 3D2DA 1N60C 3W8WA 1QLTA 5FXPA 4PYTA 5FXDA 5FXFA 3GSYA 4BC7A 3TX1A 5AE1A 3S1FA 1VDVA 2Q85A 4MLAA 3SR6B 1W1LA 5AE2A 3FW8A 5L6GA 1E8GA 1W1QA 1W1MA 5FXEA 1FO4A 2VFUA 2W54A 3C0PA 1V97A 2MBRA 1N5WC 1WVEA 3POPA 2VAOA 1ZXIC 4XLOA 3S1DA 1W1KA 3NVZB 4JAYA 5K8EA 1T3QC 4BC9A 1F0XA 2I0KA 2VFSA 3BW7A 1I19A 3DQ0A 1N63C 1E8HA 1WVFA 3W8XA 1DIQA 1VAOA 2VFVA 5HHZA 2IPIA 1W1RA 3AM9A 1N62C 2EXRA 4PVKA 2E3TA 4PVEA 3EUB3 3RJ8A 3D2JA 3TSJA 3JS8A 5D79A 4O95A 4PVHA 3NRZB
chains in the Genus database with same CATH superfamily
2BVGA 4PWCA 3VTEA 5HQXA 2W3SA 2O3GA 1DZNA 3NVYB 1HSKA 3HSUA 2VFRA 1N5XA 4PZFA 2UUVA 3NS1B 1FFVC 1DIIA 3DEDA 1W1SA 4BCAA 3S1EA 1MBBA 3KJMA 1ZR6A 2Y3SA 3B9JB 2Y3RA 2W3RA 3D2HA 1E8FA 3AN1A 1W1OA 2P3HA 3PQBA 3TSHA 5I1WA 4EC3A 2Y4GA 2W55A 4BBYA 2GQUA 1JROA 4ZOHB 3PM9A 2AXRA 2QPMA 2Y08A 2P13A 4UD8A 2WDWA 1AHVA 1W1JA 1RM6B 4HG0A 4ML8A 5AE3A 5G5GB 1MBTA 5HMRA 2UUUA 3HRDC 1FIQB 3ETRB 2QKNA 3W8ZA 1N61C 3FW7A 5AWVA 2GQTA 4OALA 5G5HB 3EJBB 3I99A 3EJEB 1UXYA 1FFUC 4DNSA 2BVFA 1AHUA 3AMZA 4JB1A 3FWAA 4PVJA 1E0YA 2Q4WA 1AHZA 2OAIA 5I1VA 1WYGA 5ADZA 1QLUA 3FW9A 4PWBA 3NVVB 3RJAA 5L6FA 2VFTA 2BVHA 3EJDB 3LLBA 3S1CA 3D2DA 1N60C 3W8WA 1QLTA 5FXPA 4PYTA 5FXDA 5FXFA 2PLSA 2R2ZA 3GSYA 1JRPA 4BC7A 3TX1A 2YVSA 5AE1A 3S1FA 1VDVA 1SB3B 2Q85A 4MLAA 3SR6B 1W1LA 5AE2A 3FW8A 3NVWB 5L6GA 1E8GA 1W1QA 1W1MA 5FXEA 1FO4A 2VFUA 2W54A 3C0PA 1V97A 2MBRA 3LAEA 1N5WC 1WVEA 3POPA 2VAOA 1ZXIC 2P4PA 4XLOA 3S1DA 2R8DA 1W1KA 3NVZB 4JAYA 2PLIA 5K8EA 1T3QC 4BC9A 1F0XA 2I0KA 2VFSA 3BW7A 1I19A 3DQ0A 1N63C 1E8HA 1WVFA 3W8XA 1DIQA 1VAOA 2VFVA 5HHZA 2IPIA 1W1RA 3AM9A 1N62C 2EXRA 4PVKA 2E3TA 2NQWA 4PVEA 3EUB3 3RJ8A 3D2JA 3TSJA 3JS8A 5D79A 4O95A 4PVHA 2RK5A 3NRZB
chains in the Genus database with same CATH topology
2BVGA 4PWCA 3VTEA 5HQXA 2W3SA 2O3GA 1DZNA 3NVYB 1HSKA 3HSUA 2VFRA 1N5XA 4PZFA 2UUVA 3NS1B 1FFVC 1DIIA 3DEDA 1W1SA 4BCAA 3S1EA 1MBBA 3KJMA 1ZR6A 2Y3SA 3B9JB 2Y3RA 2W3RA 3D2HA 1E8FA 3AN1A 1W1OA 2P3HA 3PQBA 3TSHA 5I1WA 4EC3A 2Y4GA 2W55A 4BBYA 2GQUA 1JROA 4ZOHB 3PM9A 2AXRA 2QPMA 2Y08A 2P13A 4UD8A 2WDWA 1AHVA 1W1JA 1RM6B 4HG0A 4ML8A 5AE3A 5G5GB 1MBTA 5HMRA 2UUUA 3HRDC 1FIQB 3ETRB 2QKNA 3W8ZA 1N61C 3FW7A 5AWVA 2GQTA 4OALA 5G5HB 3I99A 1UXYA 1FFUC 4DNSA 2BVFA 1AHUA 3AMZA 4JB1A 3FWAA 4PVJA 1E0YA 2Q4WA 1AHZA 2OAIA 5I1VA 1WYGA 5ADZA 1QLUA 3FW9A 4PWBA 3NVVB 3RJAA 5L6FA 2VFTA 2BVHA 3LLBA 3S1CA 3D2DA 1N60C 3W8WA 1QLTA 5FXPA 4PYTA 5FXDA 5FXFA 2PLSA 2R2ZA 3GSYA 1JRPA 4BC7A 3TX1A 2YVSA 5AE1A 3S1FA 1VDVA 1SB3B 2Q85A 4MLAA 3SR6B 1W1LA 5AE2A 3FW8A 3NVWB 5L6GA 1E8GA 1W1QA 1W1MA 5FXEA 1FO4A 2VFUA 2W54A 3C0PA 1V97A 2MBRA 3LAEA 1N5WC 1WVEA 3POPA 2VAOA 1ZXIC 2P4PA 4XLOA 3S1DA 2R8DA 1W1KA 3NVZB 4JAYA 2PLIA 5K8EA 1T3QC 4BC9A 1F0XA 2I0KA 2VFSA 3BW7A 1I19A 3DQ0A 1N63C 1E8HA 1WVFA 3W8XA 1DIQA 1VAOA 2VFVA 5HHZA 2IPIA 1W1RA 3AM9A 1N62C 2EXRA 4PVKA 2E3TA 2NQWA 4PVEA 3EUB3 3RJ8A 3D2JA 3TSJA 3JS8A 5D79A 4O95A 4PVHA 2RK5A 3NRZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BVG A;  4PWC A;  3VTE A;  5HQX A;  2W3S A;  1DZN A;  1HSK A;  3HSU A;  2VFR A;  1N5X A;  4PZF A;  3NS1 B;  1FFV C;  1DII A;  1W1S A;  4BCA A;  3S1E A;  1MBB A;  3KJM A;  1ZR6 A;  2Y3S A;  3B9J B;  2Y3R A;  2W3R A;  3D2H A;  1E8F A;  3AN1 A;  1W1O A;  3PQB A;  5I1W A;  3TSH A;  4EC3 A;  2Y4G A;  2W55 A;  4BBY A;  2GQU A;  1JRO A;  4ZOH B;  3PM9 A;  2AXR A;  2QPM A;  2Y08 A;  4UD8 A;  2WDW A;  1AHV A;  1W1J A;  4ML8 A;  5AE3 A;  1MBT A;  5HMR A;  1FIQ B;  3ETR B;  2QKN A;  3W8Z A;  1N61 C;  3FW7 A;  5AWV A;  2GQT A;  4OAL A;  3I99 A;  1UXY A;  1FFU C;  4DNS A;  2BVF A;  1AHU A;  3AMZ A;  4JB1 A;  3FWA A;  4PVJ A;  1E0Y A;  2Q4W A;  1AHZ A;  5I1V A;  1WYG A;  5ADZ A;  1QLU A;  3FW9 A;  4PWB A;  3RJA A;  5L6F A;  2VFT A;  2BVH A;  3S1C A;  3D2D A;  1N60 C;  3W8W A;  1QLT A;  5FXP A;  4PYT A;  5FXD A;  5FXF A;  3GSY A;  4BC7 A;  3TX1 A;  5AE1 A;  3S1F A;  1VDV A;  2Q85 A;  4MLA A;  3SR6 B;  1W1L A;  5AE2 A;  3FW8 A;  5L6G A;  1E8G A;  1W1Q A;  1W1M A;  5FXE A;  1FO4 A;  2VFU A;  2W54 A;  3C0P A;  1V97 A;  2MBR A;  1N5W C;  1WVE A;  3POP A;  2VAO A;  1ZXI C;  4XLO A;  3S1D A;  1W1K A;  3NVZ B;  4JAY A;  5K8E A;  1T3Q C;  4BC9 A;  1F0X A;  2I0K A;  2VFS A;  3BW7 A;  1I19 A;  3DQ0 A;  1N63 C;  1E8H A;  1WVF A;  3W8X A;  1DIQ A;  1VAO A;  2VFV A;  5HHZ A;  2IPI A;  1W1R A;  3AM9 A;  1N62 C;  2EXR A;  4PVK A;  2E3T A;  4PVE A;  3EUB 3;  3RJ8 A;  3D2J A;  3TSJ A;  3JS8 A;  5D79 A;  4O95 A;  4PVH A;  3NRZ B; 
#chains in the Genus database with same CATH topology
 2BVG A;  4PWC A;  3VTE A;  5HQX A;  2W3S A;  2O3G A;  1DZN A;  3NVY B;  1HSK A;  3HSU A;  2VFR A;  1N5X A;  4PZF A;  2UUV A;  3NS1 B;  1FFV C;  1DII A;  3DED A;  1W1S A;  4BCA A;  3S1E A;  1MBB A;  3KJM A;  1ZR6 A;  2Y3S A;  3B9J B;  2Y3R A;  2W3R A;  3D2H A;  1E8F A;  3AN1 A;  1W1O A;  2P3H A;  3PQB A;  3TSH A;  5I1W A;  4EC3 A;  2Y4G A;  2W55 A;  4BBY A;  2GQU A;  1JRO A;  4ZOH B;  3PM9 A;  2AXR A;  2QPM A;  2Y08 A;  2P13 A;  4UD8 A;  2WDW A;  1AHV A;  1W1J A;  1RM6 B;  4HG0 A;  4ML8 A;  5AE3 A;  5G5G B;  1MBT A;  5HMR A;  2UUU A;  3HRD C;  1FIQ B;  3ETR B;  2QKN A;  3W8Z A;  1N61 C;  3FW7 A;  5AWV A;  2GQT A;  4OAL A;  5G5H B;  3EJB B;  3I99 A;  3EJE B;  1UXY A;  1FFU C;  4DNS A;  2BVF A;  1AHU A;  3AMZ A;  4JB1 A;  3FWA A;  4PVJ A;  1E0Y A;  2Q4W A;  1AHZ A;  2OAI A;  5I1V A;  1WYG A;  5ADZ A;  1QLU A;  3FW9 A;  4PWB A;  3NVV B;  3RJA A;  5L6F A;  2VFT A;  2BVH A;  3EJD B;  3LLB A;  3S1C A;  3D2D A;  1N60 C;  3W8W A;  1QLT A;  5FXP A;  4PYT A;  5FXD A;  5FXF A;  2PLS A;  2R2Z A;  3GSY A;  1JRP A;  4BC7 A;  3TX1 A;  2YVS A;  5AE1 A;  3S1F A;  1VDV A;  1SB3 B;  2Q85 A;  4MLA A;  3SR6 B;  1W1L A;  5AE2 A;  3FW8 A;  3NVW B;  5L6G A;  1E8G A;  1W1Q A;  1W1M A;  5FXE A;  1FO4 A;  2VFU A;  2W54 A;  3C0P A;  1V97 A;  2MBR A;  3LAE A;  1N5W C;  1WVE A;  3POP A;  2VAO A;  1ZXI C;  2P4P A;  4XLO A;  3S1D A;  2R8D A;  1W1K A;  3NVZ B;  4JAY A;  2PLI A;  5K8E A;  1T3Q C;  4BC9 A;  1F0X A;  2I0K A;  2VFS A;  3BW7 A;  1I19 A;  3DQ0 A;  1N63 C;  1E8H A;  1WVF A;  3W8X A;  1DIQ A;  1VAO A;  2VFV A;  5HHZ A;  2IPI A;  1W1R A;  3AM9 A;  1N62 C;  2EXR A;  4PVK A;  2E3T A;  2NQW A;  4PVE A;  3EUB 3;  3RJ8 A;  3D2J A;  3TSJ A;  3JS8 A;  5D79 A;  4O95 A;  4PVH A;  2RK5 A;  3NRZ B; 
#chains in the Genus database with same CATH homology
 2BVG A;  4PWC A;  3VTE A;  5HQX A;  2W3S A;  2O3G A;  1DZN A;  3NVY B;  1HSK A;  3HSU A;  2VFR A;  1N5X A;  4PZF A;  2UUV A;  3NS1 B;  1FFV C;  1DII A;  3DED A;  1W1S A;  4BCA A;  3S1E A;  1MBB A;  3KJM A;  1ZR6 A;  2Y3S A;  3B9J B;  2Y3R A;  2W3R A;  3D2H A;  1E8F A;  3AN1 A;  1W1O A;  2P3H A;  3PQB A;  3TSH A;  5I1W A;  4EC3 A;  2Y4G A;  2W55 A;  4BBY A;  2GQU A;  1JRO A;  4ZOH B;  3PM9 A;  2AXR A;  2QPM A;  2Y08 A;  2P13 A;  4UD8 A;  2WDW A;  1AHV A;  1W1J A;  1RM6 B;  4HG0 A;  4ML8 A;  5AE3 A;  5G5G B;  1MBT A;  5HMR A;  2UUU A;  3HRD C;  1FIQ B;  3ETR B;  2QKN A;  3W8Z A;  1N61 C;  3FW7 A;  5AWV A;  2GQT A;  4OAL A;  5G5H B;  3I99 A;  1UXY A;  1FFU C;  4DNS A;  2BVF A;  1AHU A;  3AMZ A;  4JB1 A;  3FWA A;  4PVJ A;  1E0Y A;  2Q4W A;  1AHZ A;  2OAI A;  5I1V A;  1WYG A;  5ADZ A;  1QLU A;  3FW9 A;  4PWB A;  3NVV B;  3RJA A;  5L6F A;  2VFT A;  2BVH A;  3LLB A;  3S1C A;  3D2D A;  1N60 C;  3W8W A;  1QLT A;  5FXP A;  4PYT A;  5FXD A;  5FXF A;  2PLS A;  2R2Z A;  3GSY A;  1JRP A;  4BC7 A;  3TX1 A;  2YVS A;  5AE1 A;  3S1F A;  1VDV A;  1SB3 B;  2Q85 A;  4MLA A;  3SR6 B;  1W1L A;  5AE2 A;  3FW8 A;  3NVW B;  5L6G A;  1E8G A;  1W1Q A;  1W1M A;  5FXE A;  1FO4 A;  2VFU A;  2W54 A;  3C0P A;  1V97 A;  2MBR A;  3LAE A;  1N5W C;  1WVE A;  3POP A;  2VAO A;  1ZXI C;  2P4P A;  4XLO A;  3S1D A;  2R8D A;  1W1K A;  3NVZ B;  4JAY A;  2PLI A;  5K8E A;  1T3Q C;  4BC9 A;  1F0X A;  2I0K A;  2VFS A;  3BW7 A;  1I19 A;  3DQ0 A;  1N63 C;  1E8H A;  1WVF A;  3W8X A;  1DIQ A;  1VAO A;  2VFV A;  5HHZ A;  2IPI A;  1W1R A;  3AM9 A;  1N62 C;  2EXR A;  4PVK A;  2E3T A;  2NQW A;  4PVE A;  3EUB 3;  3RJ8 A;  3D2J A;  3TSJ A;  3JS8 A;  5D79 A;  4O95 A;  4PVH A;  2RK5 A;  3NRZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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