4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
2QKNA 1FFVC 4PZFA 1W1MA 4PVHA 1HSKA 4BC7A 2GQUA 3B9JB 3I99A 3S1CA 1F0XA 3EUB3 3KJMA 4PWBA 4PVJA 4MLAA 1V97A 5FXEA 4EC3A 3AN1A 5I1WA 5HQXA 2IPIA 1I19A 1N5XA 1E0YA 4JAYA 3BW7A 1MBTA 2VFRA 3AM9A 2Y4GA 1AHVA 2I0KA 2VFSA 3NS1B 3W8WA 5FXFA 4BBYA 4JB1A 1FIQB 1QLTA 3C0PA 2Q85A 2EXRA 1AHUA 3FW7A 3VTEA 3FW9A 2Q4WA 5AWVA 3W8ZA 1WVEA 1W1LA 4ML8A 2WDWA 1T3QC 1E8FA 1JROA 1UXYA 3JS8A 3ETRB 4DNSA 5L6FA 3DQ0A 4ZOHB 5ADZA 1E8GA 1N61C 4O95A 3S1FA 3TSJA 1DZNA 3FW8A 2VFTA 2W54A 3PM9A 5AE1A 1W1JA 1WVFA 1AHZA 1FFUC 5FXDA 2VFVA 3S1DA 3NVZB 3TX1A 1N63C 3D2DA 3POPA 3AMZA 1N5WC 2Y08A 5AE2A 3NRZB 2AXRA 2BVGA 1ZR6A 2W3SA 5K8EA 5FXPA 2GQTA 2Y3SA 4OALA 2W3RA 2Y3RA 1E8HA 3S1EA 2QPMA 3D2HA 4BC9A 5HHZA 1VDVA 1VAOA 3TSHA 5HMRA 3SR6B 2BVFA 2MBRA 1N60C 5I1VA 4UD8A 1FO4A 1DIIA 3D2JA 2E3TA 3RJAA 1W1SA 2W55A 5D79A 1MBBA 1W1OA 1ZXIC 3W8XA 1DIQA 3HSUA 1WYGA 1W1RA 1QLUA 1W1QA 3PQBA 1N62C 3GSYA 3RJ8A 4PVKA 3FWAA 4PYTA 5AE3A 4PWCA 2BVHA 4PVEA 1W1KA 4XLOA 4BCAA 5L6GA 2VFUA 2VAOA
chains in the Genus database with same CATH superfamily
2QKNA 1FFVC 4PZFA 1W1MA 4PVHA 1HSKA 4BC7A 2GQUA 3HRDC 3B9JB 3I99A 3S1CA 1F0XA 3EJDB 3EUB3 3KJMA 4PWBA 4PVJA 4MLAA 1V97A 1RM6B 5FXEA 4EC3A 3AN1A 5I1WA 5HQXA 2IPIA 1I19A 1N5XA 1E0YA 4JAYA 2R8DA 3BW7A 1MBTA 2VFRA 3AM9A 2Y4GA 1AHVA 2I0KA 2VFSA 2R2ZA 3NS1B 3DEDA 3W8WA 2UUUA 5FXFA 2PLSA 4BBYA 4JB1A 2P4PA 3EJEB 1FIQB 1QLTA 3C0PA 2Q85A 2EXRA 1AHUA 3FW7A 2UUVA 3VTEA 3FW9A 3EJBB 2Q4WA 5AWVA 3W8ZA 2P3HA 1WVEA 1W1LA 4ML8A 1JRPA 2WDWA 1T3QC 1E8FA 1JROA 1UXYA 2YVSA 4HG0A 3JS8A 3ETRB 4DNSA 5L6FA 3DQ0A 4ZOHB 5ADZA 1E8GA 1N61C 5G5HB 4O95A 3S1FA 2OAIA 3NVVB 3TSJA 1DZNA 3FW8A 2VFTA 2W54A 3PM9A 5AE1A 1W1JA 1WVFA 3NVWB 1AHZA 2RK5A 1FFUC 5FXDA 2P13A 2VFVA 3S1DA 1SB3B 3NVZB 3TX1A 1N63C 3NVYB 3D2DA 3POPA 2PLIA 3AMZA 1N5WC 2Y08A 3LAEA 5AE2A 3LLBA 3NRZB 2AXRA 2BVGA 1ZR6A 2W3SA 5K8EA 5FXPA 5G5GB 2GQTA 2Y3SA 4OALA 2W3RA 2Y3RA 1E8HA 3S1EA 2QPMA 3D2HA 4BC9A 5HHZA 1VDVA 1VAOA 3TSHA 5HMRA 3SR6B 2BVFA 2MBRA 1N60C 5I1VA 4UD8A 1FO4A 1DIIA 3D2JA 2E3TA 3RJAA 1W1SA 2W55A 5D79A 1MBBA 1W1OA 1ZXIC 3W8XA 1DIQA 3HSUA 2O3GA 1WYGA 1W1RA 1QLUA 1W1QA 3PQBA 1N62C 3GSYA 3RJ8A 4PVKA 3FWAA 4PYTA 5AE3A 4PWCA 2BVHA 4PVEA 1W1KA 4XLOA 4BCAA 2NQWA 5L6GA 2VFUA 2VAOA
chains in the Genus database with same CATH topology
2QKNA 1FFVC 4PZFA 1W1MA 4PVHA 1HSKA 4BC7A 2GQUA 3HRDC 3B9JB 3I99A 3S1CA 1F0XA 3EUB3 3KJMA 4PWBA 4PVJA 4MLAA 1V97A 1RM6B 5FXEA 4EC3A 3AN1A 5I1WA 5HQXA 2IPIA 1I19A 1N5XA 1E0YA 4JAYA 2R8DA 3BW7A 1MBTA 2VFRA 3AM9A 2Y4GA 1AHVA 2I0KA 2VFSA 2R2ZA 3NS1B 3DEDA 3W8WA 2UUUA 5FXFA 2PLSA 4BBYA 4JB1A 2P4PA 1FIQB 1QLTA 3C0PA 2Q85A 2EXRA 1AHUA 3FW7A 2UUVA 3VTEA 3FW9A 2Q4WA 5AWVA 3W8ZA 2P3HA 1WVEA 1W1LA 4ML8A 1JRPA 2WDWA 1T3QC 1E8FA 1JROA 1UXYA 2YVSA 4HG0A 3JS8A 3ETRB 4DNSA 5L6FA 3DQ0A 4ZOHB 5ADZA 1E8GA 1N61C 5G5HB 4O95A 3S1FA 2OAIA 3NVVB 3TSJA 1DZNA 3FW8A 2VFTA 2W54A 3PM9A 5AE1A 1W1JA 1WVFA 3NVWB 1AHZA 2RK5A 1FFUC 5FXDA 2P13A 2VFVA 3S1DA 1SB3B 3NVZB 3TX1A 1N63C 3NVYB 3D2DA 3POPA 2PLIA 3AMZA 1N5WC 2Y08A 3LAEA 5AE2A 3LLBA 3NRZB 2AXRA 2BVGA 1ZR6A 2W3SA 5K8EA 5FXPA 5G5GB 2GQTA 2Y3SA 4OALA 2W3RA 2Y3RA 1E8HA 3S1EA 2QPMA 3D2HA 4BC9A 5HHZA 1VDVA 1VAOA 3TSHA 5HMRA 3SR6B 2BVFA 2MBRA 1N60C 5I1VA 4UD8A 1FO4A 1DIIA 3D2JA 2E3TA 3RJAA 1W1SA 2W55A 5D79A 1MBBA 1W1OA 1ZXIC 3W8XA 1DIQA 3HSUA 2O3GA 1WYGA 1W1RA 1QLUA 1W1QA 3PQBA 1N62C 3GSYA 3RJ8A 4PVKA 3FWAA 4PYTA 5AE3A 4PWCA 2BVHA 4PVEA 1W1KA 4XLOA 4BCAA 2NQWA 5L6GA 2VFUA 2VAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QKN A;  1FFV C;  4PZF A;  1W1M A;  4PVH A;  1HSK A;  4BC7 A;  2GQU A;  3B9J B;  3I99 A;  3S1C A;  1F0X A;  3EUB 3;  3KJM A;  4PWB A;  4PVJ A;  4MLA A;  1V97 A;  5FXE A;  4EC3 A;  3AN1 A;  5I1W A;  5HQX A;  2IPI A;  1I19 A;  1N5X A;  1E0Y A;  4JAY A;  3BW7 A;  1MBT A;  2VFR A;  3AM9 A;  2Y4G A;  1AHV A;  2I0K A;  2VFS A;  3NS1 B;  3W8W A;  5FXF A;  4BBY A;  4JB1 A;  1FIQ B;  1QLT A;  3C0P A;  2Q85 A;  2EXR A;  1AHU A;  3FW7 A;  3VTE A;  3FW9 A;  2Q4W A;  5AWV A;  3W8Z A;  1WVE A;  1W1L A;  4ML8 A;  2WDW A;  1T3Q C;  1E8F A;  1JRO A;  1UXY A;  3JS8 A;  3ETR B;  4DNS A;  5L6F A;  3DQ0 A;  4ZOH B;  5ADZ A;  1E8G A;  1N61 C;  4O95 A;  3S1F A;  3TSJ A;  1DZN A;  3FW8 A;  2VFT A;  2W54 A;  3PM9 A;  5AE1 A;  1W1J A;  1WVF A;  1AHZ A;  1FFU C;  5FXD A;  2VFV A;  3S1D A;  3NVZ B;  3TX1 A;  1N63 C;  3D2D A;  3POP A;  3AMZ A;  1N5W C;  2Y08 A;  5AE2 A;  3NRZ B;  2AXR A;  2BVG A;  1ZR6 A;  2W3S A;  5K8E A;  5FXP A;  2GQT A;  2Y3S A;  4OAL A;  2W3R A;  2Y3R A;  1E8H A;  3S1E A;  2QPM A;  3D2H A;  4BC9 A;  5HHZ A;  1VDV A;  1VAO A;  3TSH A;  5HMR A;  3SR6 B;  2BVF A;  2MBR A;  1N60 C;  5I1V A;  4UD8 A;  1FO4 A;  1DII A;  3D2J A;  2E3T A;  3RJA A;  1W1S A;  2W55 A;  5D79 A;  1MBB A;  1W1O A;  1ZXI C;  3W8X A;  1DIQ A;  3HSU A;  1WYG A;  1W1R A;  1QLU A;  1W1Q A;  3PQB A;  1N62 C;  3GSY A;  3RJ8 A;  4PVK A;  3FWA A;  4PYT A;  5AE3 A;  4PWC A;  2BVH A;  4PVE A;  1W1K A;  4XLO A;  4BCA A;  5L6G A;  2VFU A;  2VAO A; 
#chains in the Genus database with same CATH topology
 2QKN A;  1FFV C;  4PZF A;  1W1M A;  4PVH A;  1HSK A;  4BC7 A;  2GQU A;  3HRD C;  3B9J B;  3I99 A;  3S1C A;  1F0X A;  3EJD B;  3EUB 3;  3KJM A;  4PWB A;  4PVJ A;  4MLA A;  1V97 A;  1RM6 B;  5FXE A;  4EC3 A;  3AN1 A;  5I1W A;  5HQX A;  2IPI A;  1I19 A;  1N5X A;  1E0Y A;  4JAY A;  2R8D A;  3BW7 A;  1MBT A;  2VFR A;  3AM9 A;  2Y4G A;  1AHV A;  2I0K A;  2VFS A;  2R2Z A;  3NS1 B;  3DED A;  3W8W A;  2UUU A;  5FXF A;  2PLS A;  4BBY A;  4JB1 A;  2P4P A;  3EJE B;  1FIQ B;  1QLT A;  3C0P A;  2Q85 A;  2EXR A;  1AHU A;  3FW7 A;  2UUV A;  3VTE A;  3FW9 A;  3EJB B;  2Q4W A;  5AWV A;  3W8Z A;  2P3H A;  1WVE A;  1W1L A;  4ML8 A;  1JRP A;  2WDW A;  1T3Q C;  1E8F A;  1JRO A;  1UXY A;  2YVS A;  4HG0 A;  3JS8 A;  3ETR B;  4DNS A;  5L6F A;  3DQ0 A;  4ZOH B;  5ADZ A;  1E8G A;  1N61 C;  5G5H B;  4O95 A;  3S1F A;  2OAI A;  3NVV B;  3TSJ A;  1DZN A;  3FW8 A;  2VFT A;  2W54 A;  3PM9 A;  5AE1 A;  1W1J A;  1WVF A;  3NVW B;  1AHZ A;  2RK5 A;  1FFU C;  5FXD A;  2P13 A;  2VFV A;  3S1D A;  1SB3 B;  3NVZ B;  3TX1 A;  1N63 C;  3NVY B;  3D2D A;  3POP A;  2PLI A;  3AMZ A;  1N5W C;  2Y08 A;  3LAE A;  5AE2 A;  3LLB A;  3NRZ B;  2AXR A;  2BVG A;  1ZR6 A;  2W3S A;  5K8E A;  5FXP A;  5G5G B;  2GQT A;  2Y3S A;  4OAL A;  2W3R A;  2Y3R A;  1E8H A;  3S1E A;  2QPM A;  3D2H A;  4BC9 A;  5HHZ A;  1VDV A;  1VAO A;  3TSH A;  5HMR A;  3SR6 B;  2BVF A;  2MBR A;  1N60 C;  5I1V A;  4UD8 A;  1FO4 A;  1DII A;  3D2J A;  2E3T A;  3RJA A;  1W1S A;  2W55 A;  5D79 A;  1MBB A;  1W1O A;  1ZXI C;  3W8X A;  1DIQ A;  3HSU A;  2O3G A;  1WYG A;  1W1R A;  1QLU A;  1W1Q A;  3PQB A;  1N62 C;  3GSY A;  3RJ8 A;  4PVK A;  3FWA A;  4PYT A;  5AE3 A;  4PWC A;  2BVH A;  4PVE A;  1W1K A;  4XLO A;  4BCA A;  2NQW A;  5L6G A;  2VFU A;  2VAO A; 
#chains in the Genus database with same CATH homology
 2QKN A;  1FFV C;  4PZF A;  1W1M A;  4PVH A;  1HSK A;  4BC7 A;  2GQU A;  3HRD C;  3B9J B;  3I99 A;  3S1C A;  1F0X A;  3EUB 3;  3KJM A;  4PWB A;  4PVJ A;  4MLA A;  1V97 A;  1RM6 B;  5FXE A;  4EC3 A;  3AN1 A;  5I1W A;  5HQX A;  2IPI A;  1I19 A;  1N5X A;  1E0Y A;  4JAY A;  2R8D A;  3BW7 A;  1MBT A;  2VFR A;  3AM9 A;  2Y4G A;  1AHV A;  2I0K A;  2VFS A;  2R2Z A;  3NS1 B;  3DED A;  3W8W A;  2UUU A;  5FXF A;  2PLS A;  4BBY A;  4JB1 A;  2P4P A;  1FIQ B;  1QLT A;  3C0P A;  2Q85 A;  2EXR A;  1AHU A;  3FW7 A;  2UUV A;  3VTE A;  3FW9 A;  2Q4W A;  5AWV A;  3W8Z A;  2P3H A;  1WVE A;  1W1L A;  4ML8 A;  1JRP A;  2WDW A;  1T3Q C;  1E8F A;  1JRO A;  1UXY A;  2YVS A;  4HG0 A;  3JS8 A;  3ETR B;  4DNS A;  5L6F A;  3DQ0 A;  4ZOH B;  5ADZ A;  1E8G A;  1N61 C;  5G5H B;  4O95 A;  3S1F A;  2OAI A;  3NVV B;  3TSJ A;  1DZN A;  3FW8 A;  2VFT A;  2W54 A;  3PM9 A;  5AE1 A;  1W1J A;  1WVF A;  3NVW B;  1AHZ A;  2RK5 A;  1FFU C;  5FXD A;  2P13 A;  2VFV A;  3S1D A;  1SB3 B;  3NVZ B;  3TX1 A;  1N63 C;  3NVY B;  3D2D A;  3POP A;  2PLI A;  3AMZ A;  1N5W C;  2Y08 A;  3LAE A;  5AE2 A;  3LLB A;  3NRZ B;  2AXR A;  2BVG A;  1ZR6 A;  2W3S A;  5K8E A;  5FXP A;  5G5G B;  2GQT A;  2Y3S A;  4OAL A;  2W3R A;  2Y3R A;  1E8H A;  3S1E A;  2QPM A;  3D2H A;  4BC9 A;  5HHZ A;  1VDV A;  1VAO A;  3TSH A;  5HMR A;  3SR6 B;  2BVF A;  2MBR A;  1N60 C;  5I1V A;  4UD8 A;  1FO4 A;  1DII A;  3D2J A;  2E3T A;  3RJA A;  1W1S A;  2W55 A;  5D79 A;  1MBB A;  1W1O A;  1ZXI C;  3W8X A;  1DIQ A;  3HSU A;  2O3G A;  1WYG A;  1W1R A;  1QLU A;  1W1Q A;  3PQB A;  1N62 C;  3GSY A;  3RJ8 A;  4PVK A;  3FWA A;  4PYT A;  5AE3 A;  4PWC A;  2BVH A;  4PVE A;  1W1K A;  4XLO A;  4BCA A;  2NQW A;  5L6G A;  2VFU A;  2VAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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