4UD8A

Atbbe15
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
506
structure length
500
Chain Sequence
STLQQDFVKCLVDNSDFPITASFFSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEEDSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Cell Wall Metabolism.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
molecule keywords FAD-BINDING AND BBE DOMAIN-CONTAINING PROTEIN
total genus 173
structure length 500
sequence length 506
chains with identical sequence B
ec nomenclature ec 1.1.1.194: Coniferyl-alcohol dehydrogenase.
pdb deposition date 2014-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4ud8A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4ud8A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4ud8A03
3POPA 1FFUC 2VFUA 5ADZA 2GQUA 4JB1A 2W55A 2AXRA 3EUB3 5AE3A 1FFVC 1AHUA 4ZOHB 3W8XA 1FIQB 2W54A 3BW7A 1VAOA 1W1JA 1MBBA 1N61C 1W1KA 1E8GA 4PVHA 1N60C 1FO4A 3AMZA 4PWCA 4BCAA 2E3TA 1ZXIC 1E8HA 3RJAA 1F0XA 3PM9A 2QPMA 2WDWA 3S1EA 1JROA 5FXEA 1WYGA 2VFRA 1QLUA 2BVFA 3S1FA 5FXPA 1W1LA 1WVFA 1W1SA 5I1VA 1DZNA 2BVHA 4PVKA 3S1CA 1W1RA 3VTEA 4MLAA 1N63C 4PVEA 1HSKA 1N62C 2VFSA 1T3QC 3FWAA 1E0YA 3TX1A 3SR6B 1W1MA 1AHVA 4PVJA 2Y08A 2EXRA 4BC7A 4XLOA 5HMRA 5L6FA 1E8FA 4UD8A 2Y3RA 5FXFA 2GQTA 3PQBA 2I0KA 4PZFA 3FW8A 3C0PA 3TSHA 2IPIA 2Q4WA 1ZR6A 3GSYA 1I19A 1VDVA 3D2HA 1WVEA 2QKNA 2VFVA 4PYTA 4DNSA 3FW7A 5K8EA 3RJ8A 2W3SA 5L6GA 5AE1A 3NVZB 4JAYA 1QLTA 5HQXA 5AE2A 3HSUA 2Y4GA 5FXDA 4BC9A 3I99A 3JS8A 4O95A 3D2JA 1N5WC 3FW9A 3NS1B 3ETRB 4ML8A 1DIIA 1UXYA 3NRZB 1V97A 2Q85A 3DQ0A 1MBTA 1DIQA 2VFTA 4BBYA 2BVGA 5I1WA 3W8WA 3AM9A 2W3RA 4OALA 1N5XA 2Y3SA 3KJMA 2VAOA 5HHZA 4EC3A 3S1DA 1AHZA 3B9JB 3D2DA 2MBRA 4PWBA 5AWVA 5D79A 3AN1A 1W1QA 3W8ZA 3TSJA 1W1OA
chains in the Genus database with same CATH superfamily
3POPA 2R2ZA 1FFUC 2VFUA 5ADZA 2GQUA 4JB1A 2W55A 2AXRA 3EUB3 5AE3A 1FFVC 1AHUA 1JRPA 4ZOHB 3W8XA 1FIQB 2W54A 3BW7A 1VAOA 4HG0A 1W1JA 1MBBA 1N61C 1W1KA 2P4PA 1E8GA 4PVHA 1N60C 1FO4A 3AMZA 4PWCA 4BCAA 2E3TA 1ZXIC 1E8HA 3RJAA 1F0XA 3PM9A 2QPMA 2WDWA 3S1EA 1JROA 5FXEA 1WYGA 2VFRA 1QLUA 3NVWB 2P3HA 2BVFA 3S1FA 2PLSA 5FXPA 1W1LA 1WVFA 1W1SA 2NQWA 5I1VA 1DZNA 2BVHA 4PVKA 3S1CA 3LAEA 1W1RA 3VTEA 2R8DA 4MLAA 1N63C 4PVEA 1HSKA 1N62C 2VFSA 1T3QC 3FWAA 1E0YA 3TX1A 2UUVA 3HRDC 3SR6B 1W1MA 1AHVA 4PVJA 1SB3B 2EXRA 2Y08A 4BC7A 5G5GB 4XLOA 5HMRA 3LLBA 2RK5A 5L6FA 1E8FA 3NVVB 4UD8A 2Y3RA 5FXFA 2GQTA 2UUUA 3PQBA 2I0KA 4PZFA 3FW8A 3C0PA 3TSHA 2IPIA 2Q4WA 1ZR6A 3GSYA 1I19A 3NVYB 1VDVA 2OAIA 3D2HA 1WVEA 2QKNA 2VFVA 4PYTA 4DNSA 3FW7A 5K8EA 2YVSA 3RJ8A 2W3SA 5L6GA 5AE1A 5G5HB 3NVZB 4JAYA 1QLTA 5HQXA 5AE2A 3HSUA 2Y4GA 5FXDA 4BC9A 3I99A 3JS8A 4O95A 3D2JA 3EJDB 1N5WC 3FW9A 2PLIA 3NS1B 3ETRB 3EJEB 4ML8A 1DIIA 2O3GA 1UXYA 3NRZB 1V97A 2Q85A 3DQ0A 1MBTA 1DIQA 2VFTA 1RM6B 4BBYA 2BVGA 5I1WA 3W8WA 3AM9A 2W3RA 3EJBB 1N5XA 4OALA 2Y3SA 3KJMA 2VAOA 5HHZA 3DEDA 4EC3A 3S1DA 1AHZA 3B9JB 3D2DA 2MBRA 2P13A 4PWBA 5AWVA 5D79A 3AN1A 1W1QA 3W8ZA 3TSJA 1W1OA
chains in the Genus database with same CATH topology
3POPA 2R2ZA 1FFUC 2VFUA 5ADZA 2GQUA 4JB1A 2W55A 2AXRA 3EUB3 5AE3A 1FFVC 1AHUA 1JRPA 4ZOHB 3W8XA 1FIQB 2W54A 3BW7A 1VAOA 4HG0A 1W1JA 1MBBA 1N61C 1W1KA 2P4PA 1E8GA 4PVHA 1N60C 1FO4A 3AMZA 4PWCA 4BCAA 2E3TA 1ZXIC 1E8HA 3RJAA 1F0XA 3PM9A 2QPMA 2WDWA 3S1EA 1JROA 5FXEA 1WYGA 2VFRA 1QLUA 3NVWB 2P3HA 2BVFA 3S1FA 2PLSA 5FXPA 1W1LA 1WVFA 1W1SA 2NQWA 5I1VA 1DZNA 2BVHA 4PVKA 3S1CA 3LAEA 1W1RA 3VTEA 2R8DA 4MLAA 1N63C 4PVEA 1HSKA 1N62C 2VFSA 1T3QC 3FWAA 1E0YA 3TX1A 2UUVA 3HRDC 3SR6B 1W1MA 1AHVA 4PVJA 1SB3B 2EXRA 2Y08A 4BC7A 5G5GB 4XLOA 5HMRA 3LLBA 2RK5A 5L6FA 1E8FA 3NVVB 4UD8A 2Y3RA 5FXFA 2GQTA 2UUUA 3PQBA 2I0KA 4PZFA 3FW8A 3C0PA 3TSHA 2IPIA 2Q4WA 1ZR6A 3GSYA 1I19A 2OAIA 1VDVA 3NVYB 3D2HA 1WVEA 2QKNA 2VFVA 4PYTA 4DNSA 3FW7A 5K8EA 2YVSA 3RJ8A 2W3SA 5L6GA 5AE1A 5G5HB 3NVZB 4JAYA 1QLTA 5HQXA 5AE2A 3HSUA 2Y4GA 5FXDA 4BC9A 3I99A 3JS8A 4O95A 3D2JA 1N5WC 3FW9A 2PLIA 3NS1B 3ETRB 4ML8A 1DIIA 2O3GA 1UXYA 3NRZB 1V97A 2Q85A 3DQ0A 1MBTA 1DIQA 2VFTA 1RM6B 4BBYA 2BVGA 5I1WA 3W8WA 3AM9A 2W3RA 4OALA 1N5XA 2Y3SA 3KJMA 2VAOA 5HHZA 3DEDA 4EC3A 3S1DA 1AHZA 3B9JB 3D2DA 2MBRA 2P13A 4PWBA 5AWVA 5D79A 3AN1A 1W1QA 3W8ZA 3TSJA 1W1OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3POP A;  1FFU C;  2VFU A;  5ADZ A;  2GQU A;  4JB1 A;  2W55 A;  2AXR A;  3EUB 3;  5AE3 A;  1FFV C;  1AHU A;  4ZOH B;  3W8X A;  1FIQ B;  2W54 A;  3BW7 A;  1VAO A;  1W1J A;  1MBB A;  1N61 C;  1W1K A;  1E8G A;  4PVH A;  1N60 C;  1FO4 A;  3AMZ A;  4PWC A;  4BCA A;  2E3T A;  1ZXI C;  1E8H A;  3RJA A;  1F0X A;  3PM9 A;  2QPM A;  2WDW A;  3S1E A;  1JRO A;  5FXE A;  1WYG A;  2VFR A;  1QLU A;  2BVF A;  3S1F A;  5FXP A;  1W1L A;  1WVF A;  1W1S A;  5I1V A;  1DZN A;  2BVH A;  4PVK A;  3S1C A;  1W1R A;  3VTE A;  4MLA A;  1N63 C;  4PVE A;  1HSK A;  1N62 C;  2VFS A;  1T3Q C;  3FWA A;  1E0Y A;  3TX1 A;  3SR6 B;  1W1M A;  1AHV A;  4PVJ A;  2Y08 A;  2EXR A;  4BC7 A;  4XLO A;  5HMR A;  5L6F A;  1E8F A;  4UD8 A;  2Y3R A;  5FXF A;  2GQT A;  3PQB A;  2I0K A;  4PZF A;  3FW8 A;  3C0P A;  3TSH A;  2IPI A;  2Q4W A;  1ZR6 A;  3GSY A;  1I19 A;  1VDV A;  3D2H A;  1WVE A;  2QKN A;  2VFV A;  4PYT A;  4DNS A;  3FW7 A;  5K8E A;  3RJ8 A;  2W3S A;  5L6G A;  5AE1 A;  3NVZ B;  4JAY A;  1QLT A;  5HQX A;  5AE2 A;  3HSU A;  2Y4G A;  5FXD A;  4BC9 A;  3I99 A;  3JS8 A;  4O95 A;  3D2J A;  1N5W C;  3FW9 A;  3NS1 B;  3ETR B;  4ML8 A;  1DII A;  1UXY A;  3NRZ B;  1V97 A;  2Q85 A;  3DQ0 A;  1MBT A;  1DIQ A;  2VFT A;  4BBY A;  2BVG A;  5I1W A;  3W8W A;  3AM9 A;  2W3R A;  4OAL A;  1N5X A;  2Y3S A;  3KJM A;  2VAO A;  5HHZ A;  4EC3 A;  3S1D A;  1AHZ A;  3B9J B;  3D2D A;  2MBR A;  4PWB A;  5AWV A;  5D79 A;  3AN1 A;  1W1Q A;  3W8Z A;  3TSJ A;  1W1O A; 
#chains in the Genus database with same CATH topology
 3POP A;  2R2Z A;  1FFU C;  2VFU A;  5ADZ A;  2GQU A;  4JB1 A;  2W55 A;  2AXR A;  3EUB 3;  5AE3 A;  1FFV C;  1AHU A;  1JRP A;  4ZOH B;  3W8X A;  1FIQ B;  2W54 A;  3BW7 A;  1VAO A;  4HG0 A;  1W1J A;  1MBB A;  1N61 C;  1W1K A;  2P4P A;  1E8G A;  4PVH A;  1N60 C;  1FO4 A;  3AMZ A;  4PWC A;  4BCA A;  2E3T A;  1ZXI C;  1E8H A;  3RJA A;  1F0X A;  3PM9 A;  2QPM A;  2WDW A;  3S1E A;  1JRO A;  5FXE A;  1WYG A;  2VFR A;  1QLU A;  3NVW B;  2P3H A;  2BVF A;  3S1F A;  2PLS A;  5FXP A;  1W1L A;  1WVF A;  1W1S A;  2NQW A;  5I1V A;  1DZN A;  2BVH A;  4PVK A;  3S1C A;  3LAE A;  1W1R A;  3VTE A;  2R8D A;  4MLA A;  1N63 C;  4PVE A;  1HSK A;  1N62 C;  2VFS A;  1T3Q C;  3FWA A;  1E0Y A;  3TX1 A;  2UUV A;  3HRD C;  3SR6 B;  1W1M A;  1AHV A;  4PVJ A;  1SB3 B;  2EXR A;  2Y08 A;  4BC7 A;  5G5G B;  4XLO A;  5HMR A;  3LLB A;  2RK5 A;  5L6F A;  1E8F A;  3NVV B;  4UD8 A;  2Y3R A;  5FXF A;  2GQT A;  2UUU A;  3PQB A;  2I0K A;  4PZF A;  3FW8 A;  3C0P A;  3TSH A;  2IPI A;  2Q4W A;  1ZR6 A;  3GSY A;  1I19 A;  3NVY B;  1VDV A;  2OAI A;  3D2H A;  1WVE A;  2QKN A;  2VFV A;  4PYT A;  4DNS A;  3FW7 A;  5K8E A;  2YVS A;  3RJ8 A;  2W3S A;  5L6G A;  5AE1 A;  5G5H B;  3NVZ B;  4JAY A;  1QLT A;  5HQX A;  5AE2 A;  3HSU A;  2Y4G A;  5FXD A;  4BC9 A;  3I99 A;  3JS8 A;  4O95 A;  3D2J A;  3EJD B;  1N5W C;  3FW9 A;  2PLI A;  3NS1 B;  3ETR B;  3EJE B;  4ML8 A;  1DII A;  2O3G A;  1UXY A;  3NRZ B;  1V97 A;  2Q85 A;  3DQ0 A;  1MBT A;  1DIQ A;  2VFT A;  1RM6 B;  4BBY A;  2BVG A;  5I1W A;  3W8W A;  3AM9 A;  2W3R A;  3EJB B;  1N5X A;  4OAL A;  2Y3S A;  3KJM A;  2VAO A;  5HHZ A;  3DED A;  4EC3 A;  3S1D A;  1AHZ A;  3B9J B;  3D2D A;  2MBR A;  2P13 A;  4PWB A;  5AWV A;  5D79 A;  3AN1 A;  1W1Q A;  3W8Z A;  3TSJ A;  1W1O A; 
#chains in the Genus database with same CATH homology
 3POP A;  2R2Z A;  1FFU C;  2VFU A;  5ADZ A;  2GQU A;  4JB1 A;  2W55 A;  2AXR A;  3EUB 3;  5AE3 A;  1FFV C;  1AHU A;  1JRP A;  4ZOH B;  3W8X A;  1FIQ B;  2W54 A;  3BW7 A;  1VAO A;  4HG0 A;  1W1J A;  1MBB A;  1N61 C;  1W1K A;  2P4P A;  1E8G A;  4PVH A;  1N60 C;  1FO4 A;  3AMZ A;  4PWC A;  4BCA A;  2E3T A;  1ZXI C;  1E8H A;  3RJA A;  1F0X A;  3PM9 A;  2QPM A;  2WDW A;  3S1E A;  1JRO A;  5FXE A;  1WYG A;  2VFR A;  1QLU A;  3NVW B;  2P3H A;  2BVF A;  3S1F A;  2PLS A;  5FXP A;  1W1L A;  1WVF A;  1W1S A;  2NQW A;  5I1V A;  1DZN A;  2BVH A;  4PVK A;  3S1C A;  3LAE A;  1W1R A;  3VTE A;  2R8D A;  4MLA A;  1N63 C;  4PVE A;  1HSK A;  1N62 C;  2VFS A;  1T3Q C;  3FWA A;  1E0Y A;  3TX1 A;  2UUV A;  3HRD C;  3SR6 B;  1W1M A;  1AHV A;  4PVJ A;  1SB3 B;  2EXR A;  2Y08 A;  4BC7 A;  5G5G B;  4XLO A;  5HMR A;  3LLB A;  2RK5 A;  5L6F A;  1E8F A;  3NVV B;  4UD8 A;  2Y3R A;  5FXF A;  2GQT A;  2UUU A;  3PQB A;  2I0K A;  4PZF A;  3FW8 A;  3C0P A;  3TSH A;  2IPI A;  2Q4W A;  1ZR6 A;  3GSY A;  1I19 A;  2OAI A;  1VDV A;  3NVY B;  3D2H A;  1WVE A;  2QKN A;  2VFV A;  4PYT A;  4DNS A;  3FW7 A;  5K8E A;  2YVS A;  3RJ8 A;  2W3S A;  5L6G A;  5AE1 A;  5G5H B;  3NVZ B;  4JAY A;  1QLT A;  5HQX A;  5AE2 A;  3HSU A;  2Y4G A;  5FXD A;  4BC9 A;  3I99 A;  3JS8 A;  4O95 A;  3D2J A;  1N5W C;  3FW9 A;  2PLI A;  3NS1 B;  3ETR B;  4ML8 A;  1DII A;  2O3G A;  1UXY A;  3NRZ B;  1V97 A;  2Q85 A;  3DQ0 A;  1MBT A;  1DIQ A;  2VFT A;  1RM6 B;  4BBY A;  2BVG A;  5I1W A;  3W8W A;  3AM9 A;  2W3R A;  4OAL A;  1N5X A;  2Y3S A;  3KJM A;  2VAO A;  5HHZ A;  3DED A;  4EC3 A;  3S1D A;  1AHZ A;  3B9J B;  3D2D A;  2MBR A;  2P13 A;  4PWB A;  5AWV A;  5D79 A;  3AN1 A;  1W1Q A;  3W8Z A;  3TSJ A;  1W1O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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