2Q4WA

Ensemble refinement of the protein crystal structure of cytokinin oxidase/dehydrogenase (ckx) from arabidopsis thaliana at5g21482
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
491
structure length
491
Chain Sequence
LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cytokinin dehydrogenase 7
publication title Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
total genus 137
structure length 491
sequence length 491
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2q4wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2q4wA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2q4wA03
3FW8A 1AHZA 3TSHA 4DNSA 2GQTA 3AM9A 1W1LA 4OALA 5HHZA 5AE3A 3NVZB 1VAOA 5FXEA 1N60C 2MBRA 3KJMA 4JAYA 1SB3B 2E3TA 1WYGA 5FXPA 1E8FA 3PM9A 2VFTA 5FXDA 3TSJA 1E8HA 1W1RA 2P3HA 3DQ0A 1UXYA 3FW7A 4O95A 1ZXIC 3S1DA 4EC3A 2PLIA 2PLSA 2VFVA 1W1KA 4BCAA 1V97A 4BBYA 1DIQA 1DZNA 2GQUA 3JS8A 3LAEA 3AMZA 1ZR6A 1W1OA 4PZFA 3NRZB 5D79A 3LLBA 2VAOA 3D2DA 3S1FA 1W1JA 3D2JA 3W8WA 2AXRA 2QKNA 2W54A 3VTEA 4ZOHB 3AN1A 3TX1A 4BC9A 1JRPA 1QLUA 3S1EA 1DIIA 3C0PA 2BVHA 4PVJA 2NQWA 1F0XA 1N61C 2R2ZA 1W1MA 3NVYB 1RM6B 3B9JB 3FW9A 3NVWB 2EXRA 3GSYA 4PVKA 3NVVB 3D2HA 5AE2A 5HMRA 3EUB3 5HQXA 3DEDA 2R8DA 3ETRB 5ADZA 2P4PA 3W8XA 4HG0A 1N5WC 2VFSA 1VDVA 1WVFA 5AE1A 2BVFA 3BW7A 5FXFA 3S1CA 5G5GB 4XLOA 2W55A 1MBBA 1MBTA 1E0YA 4MLAA 1N63C 1W1QA 2Q4WA 4UD8A 1AHUA 4BC7A 4ML8A 3HRDC 2BVGA 4PWCA 2W3RA 1JROA 3FWAA 5G5HB 1N62C 2O3GA 2OAIA 1T3QC 2W3SA 4PVHA 1I19A 1FFUC 2QPMA 1AHVA 2P13A 1HSKA 4PWBA 4JB1A 2Q85A 2YVSA 2RK5A 3W8ZA 1WVEA 4PYTA 1FIQB 1QLTA 2VFRA 1W1SA 4PVEA 3SR6B 2VFUA 1N5XA 2I0KA 1FO4A 3I99A 1E8GA 1FFVC 3NS1B
chains in the Genus database with same CATH superfamily
3FW8A 1AHZA 3TSHA 4DNSA 2GQTA 3AM9A 1W1LA 4OALA 5HHZA 5AE3A 3NVZB 1VAOA 5FXEA 2UUUA 1N60C 2MBRA 3KJMA 4JAYA 1SB3B 2E3TA 1WYGA 5FXPA 1E8FA 3PM9A 2VFTA 5FXDA 3TSJA 1E8HA 1W1RA 2P3HA 3DQ0A 3POPA 1UXYA 3FW7A 4O95A 1ZXIC 3S1DA 4EC3A 2PLIA 2PLSA 2VFVA 2Y4GA 1W1KA 4BCAA 5L6FA 5AWVA 1V97A 5I1WA 2Y3RA 4BBYA 3RJAA 1DIQA 2IPIA 1DZNA 2GQUA 5L6GA 3JS8A 3LAEA 3AMZA 1ZR6A 1W1OA 4PZFA 3NRZB 5D79A 3LLBA 2VAOA 3D2DA 3S1FA 1W1JA 3D2JA 3W8WA 2AXRA 2QKNA 2W54A 3VTEA 4ZOHB 3AN1A 3TX1A 4BC9A 1JRPA 1QLUA 3S1EA 1DIIA 3C0PA 3EJBB 2BVHA 4PVJA 2NQWA 1F0XA 1N61C 2R2ZA 1W1MA 3NVYB 1RM6B 3B9JB 5I1VA 3FW9A 3NVWB 5K8EA 2EXRA 3EJEB 3GSYA 3NVVB 4PVKA 3D2HA 3HSUA 5AE2A 5HMRA 3EUB3 5HQXA 3DEDA 2R8DA 3ETRB 5ADZA 2P4PA 3W8XA 4HG0A 1N5WC 2VFSA 1VDVA 1WVFA 5AE1A 2BVFA 3BW7A 2WDWA 5FXFA 3S1CA 5G5GB 4XLOA 2W55A 1MBBA 1MBTA 1E0YA 4MLAA 1N63C 1W1QA 2Q4WA 4UD8A 1AHUA 4BC7A 4ML8A 3HRDC 2BVGA 4PWCA 2W3RA 1JROA 3FWAA 5G5HB 1N62C 2O3GA 2OAIA 1T3QC 3PQBA 2W3SA 2Y08A 4PVHA 1I19A 1FFUC 2UUVA 2QPMA 1AHVA 2P13A 1HSKA 4PWBA 4JB1A 2Q85A 2YVSA 2RK5A 3W8ZA 1WVEA 4PYTA 1FIQB 1QLTA 2VFRA 1W1SA 3EJDB 4PVEA 3SR6B 2VFUA 1N5XA 2I0KA 1FO4A 3RJ8A 3I99A 2Y3SA 1E8GA 1FFVC 3NS1B
chains in the Genus database with same CATH topology
3FW8A 1AHZA 3TSHA 4DNSA 2GQTA 3AM9A 1W1LA 4OALA 5HHZA 5AE3A 3NVZB 1VAOA 5FXEA 2UUUA 1N60C 2MBRA 3KJMA 4JAYA 1SB3B 2E3TA 1WYGA 5FXPA 1E8FA 3PM9A 2VFTA 5FXDA 3TSJA 1E8HA 1W1RA 2P3HA 3DQ0A 3POPA 1UXYA 3FW7A 4O95A 1ZXIC 3S1DA 4EC3A 2PLIA 2PLSA 2VFVA 2Y4GA 1W1KA 4BCAA 5L6FA 5AWVA 1V97A 5I1WA 2Y3RA 4BBYA 3RJAA 1DIQA 2IPIA 1DZNA 2GQUA 5L6GA 3JS8A 3LAEA 3AMZA 1ZR6A 1W1OA 4PZFA 3NRZB 5D79A 3LLBA 2VAOA 3D2DA 3S1FA 1W1JA 3D2JA 3W8WA 2AXRA 2QKNA 2W54A 3VTEA 4ZOHB 3AN1A 3TX1A 4BC9A 1JRPA 1QLUA 3S1EA 1DIIA 3C0PA 2BVHA 4PVJA 2NQWA 1F0XA 1N61C 2R2ZA 1W1MA 3NVYB 1RM6B 3B9JB 5I1VA 3FW9A 3NVWB 5K8EA 2EXRA 3GSYA 4PVKA 3HSUA 3NVVB 3D2HA 5AE2A 5HMRA 3EUB3 5HQXA 3DEDA 2R8DA 3ETRB 5ADZA 2P4PA 3W8XA 4HG0A 1N5WC 2VFSA 1VDVA 1WVFA 5AE1A 2BVFA 3BW7A 2WDWA 5FXFA 3S1CA 5G5GB 4XLOA 2W55A 1MBBA 1MBTA 1E0YA 4MLAA 1N63C 1W1QA 2Q4WA 4UD8A 1AHUA 4BC7A 4ML8A 3HRDC 2BVGA 4PWCA 2W3RA 1JROA 3FWAA 5G5HB 1N62C 2O3GA 2OAIA 1T3QC 3PQBA 2W3SA 2Y08A 4PVHA 1I19A 1FFUC 2UUVA 2QPMA 1AHVA 2P13A 1HSKA 4PWBA 4JB1A 2Q85A 2YVSA 2RK5A 3W8ZA 1WVEA 4PYTA 1FIQB 1QLTA 2VFRA 1W1SA 4PVEA 3SR6B 2VFUA 1N5XA 2I0KA 1FO4A 3RJ8A 3I99A 2Y3SA 1E8GA 1FFVC 3NS1B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW8 A;  1AHZ A;  3TSH A;  4DNS A;  2GQT A;  3AM9 A;  1W1L A;  4OAL A;  5HHZ A;  5AE3 A;  3NVZ B;  1VAO A;  5FXE A;  1N60 C;  2MBR A;  3KJM A;  4JAY A;  1SB3 B;  2E3T A;  1WYG A;  5FXP A;  1E8F A;  3PM9 A;  2VFT A;  5FXD A;  3TSJ A;  1E8H A;  1W1R A;  2P3H A;  3DQ0 A;  1UXY A;  3FW7 A;  4O95 A;  1ZXI C;  3S1D A;  4EC3 A;  2PLI A;  2PLS A;  2VFV A;  1W1K A;  4BCA A;  1V97 A;  4BBY A;  1DIQ A;  1DZN A;  2GQU A;  3JS8 A;  3LAE A;  3AMZ A;  1ZR6 A;  1W1O A;  4PZF A;  3NRZ B;  5D79 A;  3LLB A;  2VAO A;  3D2D A;  3S1F A;  1W1J A;  3D2J A;  3W8W A;  2AXR A;  2QKN A;  2W54 A;  3VTE A;  4ZOH B;  3AN1 A;  3TX1 A;  4BC9 A;  1JRP A;  1QLU A;  3S1E A;  1DII A;  3C0P A;  2BVH A;  4PVJ A;  2NQW A;  1F0X A;  1N61 C;  2R2Z A;  1W1M A;  3NVY B;  1RM6 B;  3B9J B;  3FW9 A;  3NVW B;  2EXR A;  3GSY A;  4PVK A;  3NVV B;  3D2H A;  5AE2 A;  5HMR A;  3EUB 3;  5HQX A;  3DED A;  2R8D A;  3ETR B;  5ADZ A;  2P4P A;  3W8X A;  4HG0 A;  1N5W C;  2VFS A;  1VDV A;  1WVF A;  5AE1 A;  2BVF A;  3BW7 A;  5FXF A;  3S1C A;  5G5G B;  4XLO A;  2W55 A;  1MBB A;  1MBT A;  1E0Y A;  4MLA A;  1N63 C;  1W1Q A;  2Q4W A;  4UD8 A;  1AHU A;  4BC7 A;  4ML8 A;  3HRD C;  2BVG A;  4PWC A;  2W3R A;  1JRO A;  3FWA A;  5G5H B;  1N62 C;  2O3G A;  2OAI A;  1T3Q C;  2W3S A;  4PVH A;  1I19 A;  1FFU C;  2QPM A;  1AHV A;  2P13 A;  1HSK A;  4PWB A;  4JB1 A;  2Q85 A;  2YVS A;  2RK5 A;  3W8Z A;  1WVE A;  4PYT A;  1FIQ B;  1QLT A;  2VFR A;  1W1S A;  4PVE A;  3SR6 B;  2VFU A;  1N5X A;  2I0K A;  1FO4 A;  3I99 A;  1E8G A;  1FFV C;  3NS1 B; 
#chains in the Genus database with same CATH topology
 3FW8 A;  1AHZ A;  3TSH A;  4DNS A;  2GQT A;  3AM9 A;  1W1L A;  4OAL A;  5HHZ A;  5AE3 A;  3NVZ B;  1VAO A;  5FXE A;  2UUU A;  1N60 C;  2MBR A;  3KJM A;  4JAY A;  1SB3 B;  2E3T A;  1WYG A;  5FXP A;  1E8F A;  3PM9 A;  2VFT A;  5FXD A;  3TSJ A;  1E8H A;  1W1R A;  2P3H A;  3DQ0 A;  3POP A;  1UXY A;  3FW7 A;  4O95 A;  1ZXI C;  3S1D A;  4EC3 A;  2PLI A;  2PLS A;  2VFV A;  2Y4G A;  1W1K A;  4BCA A;  5L6F A;  5AWV A;  1V97 A;  5I1W A;  2Y3R A;  4BBY A;  3RJA A;  1DIQ A;  2IPI A;  1DZN A;  2GQU A;  5L6G A;  3JS8 A;  3LAE A;  3AMZ A;  1ZR6 A;  1W1O A;  4PZF A;  3NRZ B;  5D79 A;  3LLB A;  2VAO A;  3D2D A;  3S1F A;  1W1J A;  3D2J A;  3W8W A;  2AXR A;  2QKN A;  2W54 A;  3VTE A;  4ZOH B;  3AN1 A;  3TX1 A;  4BC9 A;  1JRP A;  1QLU A;  3S1E A;  1DII A;  3C0P A;  3EJB B;  2BVH A;  4PVJ A;  2NQW A;  1F0X A;  1N61 C;  2R2Z A;  1W1M A;  3NVY B;  1RM6 B;  3B9J B;  5I1V A;  3FW9 A;  3NVW B;  5K8E A;  2EXR A;  3EJE B;  3GSY A;  3NVV B;  4PVK A;  3D2H A;  3HSU A;  5AE2 A;  5HMR A;  3EUB 3;  5HQX A;  3DED A;  2R8D A;  3ETR B;  5ADZ A;  2P4P A;  3W8X A;  4HG0 A;  1N5W C;  2VFS A;  1VDV A;  1WVF A;  5AE1 A;  2BVF A;  3BW7 A;  2WDW A;  5FXF A;  3S1C A;  5G5G B;  4XLO A;  2W55 A;  1MBB A;  1MBT A;  1E0Y A;  4MLA A;  1N63 C;  1W1Q A;  2Q4W A;  4UD8 A;  1AHU A;  4BC7 A;  4ML8 A;  3HRD C;  2BVG A;  4PWC A;  2W3R A;  1JRO A;  3FWA A;  5G5H B;  1N62 C;  2O3G A;  2OAI A;  1T3Q C;  3PQB A;  2W3S A;  2Y08 A;  4PVH A;  1I19 A;  1FFU C;  2UUV A;  2QPM A;  1AHV A;  2P13 A;  1HSK A;  4PWB A;  4JB1 A;  2Q85 A;  2YVS A;  2RK5 A;  3W8Z A;  1WVE A;  4PYT A;  1FIQ B;  1QLT A;  2VFR A;  1W1S A;  3EJD B;  4PVE A;  3SR6 B;  2VFU A;  1N5X A;  2I0K A;  1FO4 A;  3RJ8 A;  3I99 A;  2Y3S A;  1E8G A;  1FFV C;  3NS1 B; 
#chains in the Genus database with same CATH homology
 3FW8 A;  1AHZ A;  3TSH A;  4DNS A;  2GQT A;  3AM9 A;  1W1L A;  4OAL A;  5HHZ A;  5AE3 A;  3NVZ B;  1VAO A;  5FXE A;  2UUU A;  1N60 C;  2MBR A;  3KJM A;  4JAY A;  1SB3 B;  2E3T A;  1WYG A;  5FXP A;  1E8F A;  3PM9 A;  2VFT A;  5FXD A;  3TSJ A;  1E8H A;  1W1R A;  2P3H A;  3DQ0 A;  3POP A;  1UXY A;  3FW7 A;  4O95 A;  1ZXI C;  3S1D A;  4EC3 A;  2PLI A;  2PLS A;  2VFV A;  2Y4G A;  1W1K A;  4BCA A;  5L6F A;  5AWV A;  1V97 A;  5I1W A;  2Y3R A;  4BBY A;  3RJA A;  1DIQ A;  2IPI A;  1DZN A;  2GQU A;  5L6G A;  3JS8 A;  3LAE A;  3AMZ A;  1ZR6 A;  1W1O A;  4PZF A;  3NRZ B;  5D79 A;  3LLB A;  2VAO A;  3D2D A;  3S1F A;  1W1J A;  3D2J A;  3W8W A;  2AXR A;  2QKN A;  2W54 A;  3VTE A;  4ZOH B;  3AN1 A;  3TX1 A;  4BC9 A;  1JRP A;  1QLU A;  3S1E A;  1DII A;  3C0P A;  2BVH A;  4PVJ A;  2NQW A;  1F0X A;  1N61 C;  2R2Z A;  1W1M A;  3NVY B;  1RM6 B;  3B9J B;  5I1V A;  3FW9 A;  3NVW B;  5K8E A;  2EXR A;  3GSY A;  4PVK A;  3HSU A;  3NVV B;  3D2H A;  5AE2 A;  5HMR A;  3EUB 3;  5HQX A;  3DED A;  2R8D A;  3ETR B;  5ADZ A;  2P4P A;  3W8X A;  4HG0 A;  1N5W C;  2VFS A;  1VDV A;  1WVF A;  5AE1 A;  2BVF A;  3BW7 A;  2WDW A;  5FXF A;  3S1C A;  5G5G B;  4XLO A;  2W55 A;  1MBB A;  1MBT A;  1E0Y A;  4MLA A;  1N63 C;  1W1Q A;  2Q4W A;  4UD8 A;  1AHU A;  4BC7 A;  4ML8 A;  3HRD C;  2BVG A;  4PWC A;  2W3R A;  1JRO A;  3FWA A;  5G5H B;  1N62 C;  2O3G A;  2OAI A;  1T3Q C;  3PQB A;  2W3S A;  2Y08 A;  4PVH A;  1I19 A;  1FFU C;  2UUV A;  2QPM A;  1AHV A;  2P13 A;  1HSK A;  4PWB A;  4JB1 A;  2Q85 A;  2YVS A;  2RK5 A;  3W8Z A;  1WVE A;  4PYT A;  1FIQ B;  1QLT A;  2VFR A;  1W1S A;  4PVE A;  3SR6 B;  2VFU A;  1N5X A;  2I0K A;  1FO4 A;  3RJ8 A;  3I99 A;  2Y3S A;  1E8G A;  1FFV C;  3NS1 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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