2Q4WA

Ensemble refinement of the protein crystal structure of cytokinin oxidase/dehydrogenase (ckx) from arabidopsis thaliana at5g21482
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
491
structure length
491
Chain Sequence
LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 7
publication title Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 137
structure length 491
sequence length 491
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2q4wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2q4wA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2q4wA03
4PWCA 1V97A 3GSYA 4HG0A 1N63C 3NVYB 3TX1A 2O3GA 1N60C 1WVEA 4PZFA 2QKNA 3DEDA 1DIIA 2VFSA 3DQ0A 3TSJA 3I99A 1W1SA 1I19A 1DZNA 3W8ZA 4PWBA 3NS1B 2YVSA 1ZR6A 4PVHA 3AMZA 2RK5A 5D79A 1N61C 4ZOHB 4BCAA 1ZXIC 3W8XA 1JRPA 2P4PA 1W1RA 3D2HA 1E0YA 3TSHA 3FW7A 2GQUA 4XLOA 2AXRA 5G5GB 3AM9A 3EUB3 3FW8A 2NQWA 1E8HA 5ADZA 4JAYA 5FXDA 1MBTA 1VAOA 3D2DA 3S1FA 1W1LA 2VFVA 1RM6B 2BVHA 3D2JA 1N62C 1FO4A 3S1DA 1SB3B 1HSKA 3PM9A 5G5HB 1E8FA 2VAOA 3ETRB 3B9JB 1WYGA 2W3SA 1WVFA 3NRZB 1W1JA 1W1OA 2EXRA 4BC7A 4JB1A 2OAIA 3S1CA 3JS8A 2R2ZA 5HMRA 3HRDC 1QLTA 5AE3A 5HQXA 2Q4WA 3LLBA 3LAEA 3KJMA 1FFVC 1N5WC 3SR6B 4UD8A 2QPMA 1AHVA 2P13A 3C0PA 3BW7A 3S1EA 2PLSA 3VTEA 1FIQB 2MBRA 4DNSA 5AE1A 2R8DA 3FWAA 5FXPA 5FXEA 2GQTA 2Q85A 2I0KA 5AE2A 3FW9A 2W3RA 1W1QA 4PVKA 1MBBA 5FXFA 1FFUC 1QLUA 4MLAA 1T3QC 2E3TA 4PVEA 2VFUA 2W55A 2VFTA 3NVWB 4EC3A 1JROA 4ML8A 2BVFA 3AN1A 4BBYA 2W54A 3NVZB 1F0XA 4OALA 4BC9A 1N5XA 2PLIA 1E8GA 4O95A 1UXYA 3NVVB 2VFRA 1DIQA 1VDVA 4PYTA 1AHZA 1W1KA 2BVGA 3W8WA 5HHZA 2P3HA 1AHUA 4PVJA 1W1MA
chains in the Genus database with same CATH superfamily
4PWCA 5K8EA 1V97A 3EJDB 3GSYA 3RJ8A 3EJEB 4HG0A 1N63C 3NVYB 3TX1A 2O3GA 5I1VA 1N60C 1WVEA 4PZFA 2QKNA 3DEDA 1DIIA 2VFSA 3DQ0A 3TSJA 3I99A 1W1SA 1I19A 1DZNA 3W8ZA 2Y08A 4PWBA 3NS1B 2YVSA 1ZR6A 2Y3RA 3RJAA 4PVHA 2Y4GA 3AMZA 2RK5A 5D79A 1N61C 2IPIA 4ZOHB 4BCAA 1ZXIC 3W8XA 1JRPA 2UUUA 2P4PA 1W1RA 3D2HA 1E0YA 3TSHA 3FW7A 2GQUA 4XLOA 2AXRA 5G5GB 3AM9A 3EUB3 3FW8A 2NQWA 1E8HA 5ADZA 4JAYA 5FXDA 1MBTA 1VAOA 3D2DA 3S1FA 1W1LA 2VFVA 1RM6B 2BVHA 3D2JA 1N62C 1FO4A 3S1DA 1SB3B 1HSKA 3PM9A 5G5HB 1E8FA 2VAOA 3ETRB 5AWVA 3B9JB 1WYGA 2W3SA 1WVFA 3NRZB 1W1JA 1W1OA 2EXRA 4BC7A 5I1WA 4JB1A 2OAIA 3S1CA 3JS8A 2R2ZA 5HMRA 3HRDC 1QLTA 5AE3A 5HQXA 2Q4WA 2UUVA 3LLBA 3LAEA 3PQBA 3KJMA 1FFVC 1N5WC 3SR6B 4UD8A 3HSUA 2QPMA 1AHVA 2P13A 3C0PA 3BW7A 3POPA 5L6FA 3S1EA 2PLSA 3VTEA 1FIQB 2MBRA 4DNSA 5AE1A 2R8DA 3FWAA 5FXPA 5FXEA 2GQTA 2Q85A 2I0KA 5AE2A 3FW9A 2W3RA 1W1QA 3EJBB 4PVKA 1MBBA 5FXFA 1FFUC 1QLUA 4MLAA 1T3QC 2E3TA 4PVEA 5L6GA 2VFUA 2W55A 2VFTA 3NVWB 4EC3A 2WDWA 1JROA 4ML8A 2BVFA 3AN1A 4BBYA 2W54A 2Y3SA 3NVZB 1F0XA 4OALA 4BC9A 1N5XA 2PLIA 1E8GA 4O95A 1UXYA 3NVVB 2VFRA 1DIQA 1VDVA 4PYTA 1AHZA 1W1KA 2BVGA 3W8WA 5HHZA 2P3HA 1AHUA 4PVJA 1W1MA
chains in the Genus database with same CATH topology
4PWCA 5K8EA 1V97A 3GSYA 3RJ8A 4HG0A 1N63C 3NVYB 3TX1A 2O3GA 5I1VA 1N60C 1WVEA 4PZFA 2QKNA 3DEDA 1DIIA 2VFSA 3DQ0A 3TSJA 3I99A 1W1SA 1I19A 1DZNA 3W8ZA 2Y08A 4PWBA 3NS1B 2YVSA 1ZR6A 2Y3RA 3RJAA 4PVHA 2Y4GA 3AMZA 2RK5A 5D79A 1N61C 2IPIA 4ZOHB 4BCAA 1ZXIC 3W8XA 1JRPA 2UUUA 2P4PA 1W1RA 3D2HA 1E0YA 3TSHA 3FW7A 2GQUA 4XLOA 2AXRA 5G5GB 3AM9A 3EUB3 3FW8A 2NQWA 1E8HA 5ADZA 4JAYA 5FXDA 1MBTA 1VAOA 3D2DA 3S1FA 1W1LA 2VFVA 1RM6B 2BVHA 3D2JA 1N62C 1FO4A 3S1DA 1SB3B 1HSKA 3PM9A 5G5HB 1E8FA 2VAOA 3ETRB 5AWVA 3B9JB 1WYGA 2W3SA 1WVFA 3NRZB 1W1JA 1W1OA 2EXRA 4BC7A 5I1WA 4JB1A 2OAIA 3S1CA 3JS8A 2R2ZA 5HMRA 3HRDC 1QLTA 5AE3A 5HQXA 2Q4WA 2UUVA 3LLBA 3LAEA 3PQBA 3KJMA 1FFVC 1N5WC 3SR6B 4UD8A 3HSUA 2QPMA 1AHVA 2P13A 3C0PA 3BW7A 3POPA 5L6FA 3S1EA 2PLSA 3VTEA 1FIQB 2MBRA 4DNSA 5AE1A 2R8DA 3FWAA 5FXPA 5FXEA 2GQTA 2Q85A 2I0KA 5AE2A 3FW9A 2W3RA 1W1QA 4PVKA 1MBBA 5FXFA 1FFUC 1QLUA 4MLAA 1T3QC 2E3TA 4PVEA 5L6GA 2VFUA 2W55A 2VFTA 3NVWB 4EC3A 2WDWA 1JROA 4ML8A 2BVFA 3AN1A 4BBYA 2W54A 2Y3SA 3NVZB 1F0XA 4OALA 4BC9A 1N5XA 2PLIA 1E8GA 4O95A 1UXYA 3NVVB 2VFRA 1DIQA 1VDVA 4PYTA 1AHZA 1W1KA 2BVGA 3W8WA 5HHZA 2P3HA 1AHUA 4PVJA 1W1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PWC A;  1V97 A;  3GSY A;  4HG0 A;  1N63 C;  3NVY B;  3TX1 A;  2O3G A;  1N60 C;  1WVE A;  4PZF A;  2QKN A;  3DED A;  1DII A;  2VFS A;  3DQ0 A;  3TSJ A;  3I99 A;  1W1S A;  1I19 A;  1DZN A;  3W8Z A;  4PWB A;  3NS1 B;  2YVS A;  1ZR6 A;  4PVH A;  3AMZ A;  2RK5 A;  5D79 A;  1N61 C;  4ZOH B;  4BCA A;  1ZXI C;  3W8X A;  1JRP A;  2P4P A;  1W1R A;  3D2H A;  1E0Y A;  3TSH A;  3FW7 A;  2GQU A;  4XLO A;  2AXR A;  5G5G B;  3AM9 A;  3EUB 3;  3FW8 A;  2NQW A;  1E8H A;  5ADZ A;  4JAY A;  5FXD A;  1MBT A;  1VAO A;  3D2D A;  3S1F A;  1W1L A;  2VFV A;  1RM6 B;  2BVH A;  3D2J A;  1N62 C;  1FO4 A;  3S1D A;  1SB3 B;  1HSK A;  3PM9 A;  5G5H B;  1E8F A;  2VAO A;  3ETR B;  3B9J B;  1WYG A;  2W3S A;  1WVF A;  3NRZ B;  1W1J A;  1W1O A;  2EXR A;  4BC7 A;  4JB1 A;  2OAI A;  3S1C A;  3JS8 A;  2R2Z A;  5HMR A;  3HRD C;  1QLT A;  5AE3 A;  5HQX A;  2Q4W A;  3LLB A;  3LAE A;  3KJM A;  1FFV C;  1N5W C;  3SR6 B;  4UD8 A;  2QPM A;  1AHV A;  2P13 A;  3C0P A;  3BW7 A;  3S1E A;  2PLS A;  3VTE A;  1FIQ B;  2MBR A;  4DNS A;  5AE1 A;  2R8D A;  3FWA A;  5FXP A;  5FXE A;  2GQT A;  2Q85 A;  2I0K A;  5AE2 A;  3FW9 A;  2W3R A;  1W1Q A;  4PVK A;  1MBB A;  5FXF A;  1FFU C;  1QLU A;  4MLA A;  1T3Q C;  2E3T A;  4PVE A;  2VFU A;  2W55 A;  2VFT A;  3NVW B;  4EC3 A;  1JRO A;  4ML8 A;  2BVF A;  3AN1 A;  4BBY A;  2W54 A;  3NVZ B;  1F0X A;  4OAL A;  4BC9 A;  1N5X A;  2PLI A;  1E8G A;  4O95 A;  1UXY A;  3NVV B;  2VFR A;  1DIQ A;  1VDV A;  4PYT A;  1AHZ A;  1W1K A;  2BVG A;  3W8W A;  5HHZ A;  2P3H A;  1AHU A;  4PVJ A;  1W1M A; 
#chains in the Genus database with same CATH topology
 4PWC A;  5K8E A;  1V97 A;  3EJD B;  3GSY A;  3RJ8 A;  3EJE B;  4HG0 A;  1N63 C;  3NVY B;  3TX1 A;  2O3G A;  5I1V A;  1N60 C;  1WVE A;  4PZF A;  2QKN A;  3DED A;  1DII A;  2VFS A;  3DQ0 A;  3TSJ A;  3I99 A;  1W1S A;  1I19 A;  1DZN A;  3W8Z A;  2Y08 A;  4PWB A;  3NS1 B;  2YVS A;  1ZR6 A;  2Y3R A;  3RJA A;  4PVH A;  2Y4G A;  3AMZ A;  2RK5 A;  5D79 A;  1N61 C;  2IPI A;  4ZOH B;  4BCA A;  1ZXI C;  3W8X A;  1JRP A;  2UUU A;  2P4P A;  1W1R A;  3D2H A;  1E0Y A;  3TSH A;  3FW7 A;  2GQU A;  4XLO A;  2AXR A;  5G5G B;  3AM9 A;  3EUB 3;  3FW8 A;  2NQW A;  1E8H A;  5ADZ A;  4JAY A;  5FXD A;  1MBT A;  1VAO A;  3D2D A;  3S1F A;  1W1L A;  2VFV A;  1RM6 B;  2BVH A;  3D2J A;  1N62 C;  1FO4 A;  3S1D A;  1SB3 B;  1HSK A;  3PM9 A;  5G5H B;  1E8F A;  2VAO A;  3ETR B;  5AWV A;  3B9J B;  1WYG A;  2W3S A;  1WVF A;  3NRZ B;  1W1J A;  1W1O A;  2EXR A;  4BC7 A;  5I1W A;  4JB1 A;  2OAI A;  3S1C A;  3JS8 A;  2R2Z A;  5HMR A;  3HRD C;  1QLT A;  5AE3 A;  5HQX A;  2Q4W A;  2UUV A;  3LLB A;  3LAE A;  3PQB A;  3KJM A;  1FFV C;  1N5W C;  3SR6 B;  4UD8 A;  3HSU A;  2QPM A;  1AHV A;  2P13 A;  3C0P A;  3BW7 A;  3POP A;  5L6F A;  3S1E A;  2PLS A;  3VTE A;  1FIQ B;  2MBR A;  4DNS A;  5AE1 A;  2R8D A;  3FWA A;  5FXP A;  5FXE A;  2GQT A;  2Q85 A;  2I0K A;  5AE2 A;  3FW9 A;  2W3R A;  1W1Q A;  3EJB B;  4PVK A;  1MBB A;  5FXF A;  1FFU C;  1QLU A;  4MLA A;  1T3Q C;  2E3T A;  4PVE A;  5L6G A;  2VFU A;  2W55 A;  2VFT A;  3NVW B;  4EC3 A;  2WDW A;  1JRO A;  4ML8 A;  2BVF A;  3AN1 A;  4BBY A;  2W54 A;  2Y3S A;  3NVZ B;  1F0X A;  4OAL A;  4BC9 A;  1N5X A;  2PLI A;  1E8G A;  4O95 A;  1UXY A;  3NVV B;  2VFR A;  1DIQ A;  1VDV A;  4PYT A;  1AHZ A;  1W1K A;  2BVG A;  3W8W A;  5HHZ A;  2P3H A;  1AHU A;  4PVJ A;  1W1M A; 
#chains in the Genus database with same CATH homology
 4PWC A;  5K8E A;  1V97 A;  3GSY A;  3RJ8 A;  4HG0 A;  1N63 C;  3NVY B;  3TX1 A;  2O3G A;  5I1V A;  1N60 C;  1WVE A;  4PZF A;  2QKN A;  3DED A;  1DII A;  2VFS A;  3DQ0 A;  3TSJ A;  3I99 A;  1W1S A;  1I19 A;  1DZN A;  3W8Z A;  2Y08 A;  4PWB A;  3NS1 B;  2YVS A;  1ZR6 A;  2Y3R A;  3RJA A;  4PVH A;  2Y4G A;  3AMZ A;  2RK5 A;  5D79 A;  1N61 C;  2IPI A;  4ZOH B;  4BCA A;  1ZXI C;  3W8X A;  1JRP A;  2UUU A;  2P4P A;  1W1R A;  3D2H A;  1E0Y A;  3TSH A;  3FW7 A;  2GQU A;  4XLO A;  2AXR A;  5G5G B;  3AM9 A;  3EUB 3;  3FW8 A;  2NQW A;  1E8H A;  5ADZ A;  4JAY A;  5FXD A;  1MBT A;  1VAO A;  3D2D A;  3S1F A;  1W1L A;  2VFV A;  1RM6 B;  2BVH A;  3D2J A;  1N62 C;  1FO4 A;  3S1D A;  1SB3 B;  1HSK A;  3PM9 A;  5G5H B;  1E8F A;  2VAO A;  3ETR B;  5AWV A;  3B9J B;  1WYG A;  2W3S A;  1WVF A;  3NRZ B;  1W1J A;  1W1O A;  2EXR A;  4BC7 A;  5I1W A;  4JB1 A;  2OAI A;  3S1C A;  3JS8 A;  2R2Z A;  5HMR A;  3HRD C;  1QLT A;  5AE3 A;  5HQX A;  2Q4W A;  2UUV A;  3LLB A;  3LAE A;  3PQB A;  3KJM A;  1FFV C;  1N5W C;  3SR6 B;  4UD8 A;  3HSU A;  2QPM A;  1AHV A;  2P13 A;  3C0P A;  3BW7 A;  3POP A;  5L6F A;  3S1E A;  2PLS A;  3VTE A;  1FIQ B;  2MBR A;  4DNS A;  5AE1 A;  2R8D A;  3FWA A;  5FXP A;  5FXE A;  2GQT A;  2Q85 A;  2I0K A;  5AE2 A;  3FW9 A;  2W3R A;  1W1Q A;  4PVK A;  1MBB A;  5FXF A;  1FFU C;  1QLU A;  4MLA A;  1T3Q C;  2E3T A;  4PVE A;  5L6G A;  2VFU A;  2W55 A;  2VFT A;  3NVW B;  4EC3 A;  2WDW A;  1JRO A;  4ML8 A;  2BVF A;  3AN1 A;  4BBY A;  2W54 A;  2Y3S A;  3NVZ B;  1F0X A;  4OAL A;  4BC9 A;  1N5X A;  2PLI A;  1E8G A;  4O95 A;  1UXY A;  3NVV B;  2VFR A;  1DIQ A;  1VDV A;  4PYT A;  1AHZ A;  1W1K A;  2BVG A;  3W8W A;  5HHZ A;  2P3H A;  1AHU A;  4PVJ A;  1W1M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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