2Q4WA

Ensemble refinement of the protein crystal structure of cytokinin oxidase/dehydrogenase (ckx) from arabidopsis thaliana at5g21482
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
491
structure length
491
Chain Sequence
LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cytokinin dehydrogenase 7
publication title Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Oxidoreductase
total genus 137
structure length 491
sequence length 491
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2q4wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2q4wA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2q4wA03
5HMRA 2P3HA 1AHVA 1E8GA 1QLUA 1W1RA 1VAOA 3TSJA 1AHZA 3DQ0A 2W55A 1FO4A 1UXYA 2YVSA 4XLOA 3D2HA 5HHZA 1W1QA 1E8HA 4PVKA 3DEDA 4UD8A 4BC9A 2EXRA 2R2ZA 5G5GB 2BVHA 2PLIA 1MBBA 4ZOHB 2I0KA 4PVHA 5FXEA 3FW8A 3W8WA 2RK5A 1N60C 1N63C 5AE2A 3NVVB 4MLAA 3I99A 3C0PA 5G5HB 5AE1A 3BW7A 4O95A 1W1MA 1DIQA 1N5XA 1MBTA 1JROA 1SB3B 1RM6B 2W3RA 2O3GA 1T3QC 2BVGA 2VAOA 2P13A 3AN1A 3S1CA 1FIQB 4ML8A 5ADZA 1I19A 4DNSA 4PWCA 3TX1A 3NVYB 5D79A 3LLBA 3B9JB 1F0XA 1V97A 3NVZB 4EC3A 3PM9A 3NRZB 2OAIA 2MBRA 1DIIA 4PYTA 3TSHA 1W1OA 1WVEA 3NVWB 4HG0A 4OALA 2Q4WA 3HRDC 3D2DA 2E3TA 1W1KA 3AM9A 4PWBA 4PVJA 2VFUA 1N62C 1JRPA 3W8XA 3ETRB 1QLTA 2GQUA 5FXDA 1N5WC 3GSYA 3SR6B 1ZR6A 1HSKA 4PVEA 3S1EA 3JS8A 2QKNA 3D2JA 4BC7A 3FW9A 1FFUC 2QPMA 3EUB3 2P4PA 2BVFA 3S1FA 1N61C 1VDVA 1W1SA 3KJMA 3S1DA 2NQWA 1WYGA 3FWAA 2VFVA 2W54A 2PLSA 3LAEA 3FW7A 1W1JA 2VFSA 2W3SA 4JB1A 3W8ZA 1E8FA 2VFRA 3AMZA 5FXPA 1E0YA 1ZXIC 5FXFA 4BCAA 1WVFA 2R8DA 4JAYA 4PZFA 2AXRA 2Q85A 5AE3A 5HQXA 1W1LA 3VTEA 4BBYA 1AHUA 1DZNA 3NS1B 2VFTA 1FFVC 2GQTA
chains in the Genus database with same CATH superfamily
5HMRA 2P3HA 3RJAA 1AHVA 1E8GA 1QLUA 1W1RA 3EJBB 1VAOA 3TSJA 1AHZA 3DQ0A 2W55A 1FO4A 1UXYA 2YVSA 4XLOA 3D2HA 5HHZA 1W1QA 1E8HA 5L6GA 4PVKA 3DEDA 4UD8A 4BC9A 2EXRA 2R2ZA 5G5GB 2IPIA 2BVHA 2PLIA 1MBBA 2Y08A 5AWVA 4ZOHB 2I0KA 5I1WA 4PVHA 5FXEA 3FW8A 3RJ8A 3W8WA 2RK5A 1N60C 1N63C 5AE2A 3POPA 3NVVB 4MLAA 3I99A 3C0PA 5G5HB 5AE1A 3BW7A 4O95A 1W1MA 2UUVA 1DIQA 3PQBA 5L6FA 1N5XA 1MBTA 1JROA 5K8EA 1SB3B 1RM6B 2W3RA 2O3GA 1T3QC 2BVGA 2VAOA 2P13A 2WDWA 3AN1A 3S1CA 3EJEB 1FIQB 4ML8A 5ADZA 5I1VA 1I19A 4DNSA 4PWCA 3TX1A 3NVYB 5D79A 3LLBA 2UUUA 3B9JB 1F0XA 1V97A 3NVZB 4EC3A 3PM9A 3NRZB 2OAIA 2MBRA 1DIIA 4PYTA 3TSHA 1W1OA 1WVEA 3NVWB 4HG0A 2Y4GA 4OALA 2Q4WA 3HRDC 3D2DA 3HSUA 2E3TA 1W1KA 3AM9A 4PWBA 4PVJA 3EJDB 2VFUA 1N62C 1JRPA 3W8XA 3ETRB 1QLTA 2GQUA 5FXDA 1N5WC 3GSYA 3SR6B 1ZR6A 1HSKA 4PVEA 3S1EA 3JS8A 2QKNA 3D2JA 4BC7A 3FW9A 1FFUC 2QPMA 3EUB3 2P4PA 2BVFA 3S1FA 2Y3SA 1N61C 1VDVA 1W1SA 3KJMA 3S1DA 2NQWA 1WYGA 3FWAA 2VFVA 2W54A 2PLSA 3LAEA 3FW7A 1W1JA 2VFSA 2W3SA 4JB1A 3W8ZA 1E8FA 2VFRA 3AMZA 5FXPA 1E0YA 1ZXIC 5FXFA 4BCAA 1WVFA 2R8DA 2Y3RA 4JAYA 4PZFA 2AXRA 2Q85A 5AE3A 5HQXA 1W1LA 3VTEA 4BBYA 1AHUA 1DZNA 3NS1B 2VFTA 1FFVC 2GQTA
chains in the Genus database with same CATH topology
5HMRA 2P3HA 3RJAA 1AHVA 1E8GA 1QLUA 1W1RA 1VAOA 3TSJA 1AHZA 3DQ0A 2W55A 1FO4A 1UXYA 2YVSA 4XLOA 3D2HA 5HHZA 1W1QA 1E8HA 5L6GA 4PVKA 3DEDA 4UD8A 4BC9A 2EXRA 2R2ZA 5G5GB 2IPIA 2BVHA 2PLIA 1MBBA 2Y08A 5AWVA 4ZOHB 2I0KA 5I1WA 4PVHA 5FXEA 3FW8A 3RJ8A 3W8WA 2RK5A 1N60C 1N63C 5AE2A 3POPA 3NVVB 4MLAA 3I99A 3C0PA 5G5HB 5AE1A 3BW7A 4O95A 1W1MA 2UUVA 1DIQA 3PQBA 5L6FA 1N5XA 1MBTA 1JROA 5K8EA 1SB3B 1RM6B 2W3RA 2O3GA 1T3QC 2BVGA 2VAOA 2P13A 2WDWA 3AN1A 3S1CA 1FIQB 4ML8A 5ADZA 5I1VA 1I19A 4DNSA 4PWCA 3TX1A 3NVYB 5D79A 3LLBA 2UUUA 3B9JB 1F0XA 1V97A 3NVZB 4EC3A 3PM9A 3NRZB 2OAIA 2MBRA 1DIIA 4PYTA 3TSHA 1W1OA 1WVEA 3NVWB 4HG0A 2Y4GA 4OALA 2Q4WA 3HRDC 3D2DA 3HSUA 2E3TA 1W1KA 3AM9A 4PWBA 4PVJA 2VFUA 1N62C 1JRPA 3W8XA 3ETRB 1QLTA 2GQUA 5FXDA 1N5WC 3GSYA 3SR6B 1ZR6A 1HSKA 4PVEA 3S1EA 3JS8A 2QKNA 3D2JA 4BC7A 3FW9A 1FFUC 2QPMA 3EUB3 2P4PA 2BVFA 3S1FA 2Y3SA 1N61C 1VDVA 1W1SA 3KJMA 3S1DA 2NQWA 1WYGA 3FWAA 2VFVA 2W54A 2PLSA 3LAEA 3FW7A 1W1JA 2VFSA 2W3SA 4JB1A 3W8ZA 1E8FA 2VFRA 3AMZA 5FXPA 1E0YA 1ZXIC 5FXFA 4BCAA 1WVFA 2R8DA 2Y3RA 4JAYA 4PZFA 2AXRA 2Q85A 5AE3A 5HQXA 1W1LA 3VTEA 4BBYA 1AHUA 1DZNA 3NS1B 2VFTA 1FFVC 2GQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HMR A;  2P3H A;  1AHV A;  1E8G A;  1QLU A;  1W1R A;  1VAO A;  3TSJ A;  1AHZ A;  3DQ0 A;  2W55 A;  1FO4 A;  1UXY A;  2YVS A;  4XLO A;  3D2H A;  5HHZ A;  1W1Q A;  1E8H A;  4PVK A;  3DED A;  4UD8 A;  4BC9 A;  2EXR A;  2R2Z A;  5G5G B;  2BVH A;  2PLI A;  1MBB A;  4ZOH B;  2I0K A;  4PVH A;  5FXE A;  3FW8 A;  3W8W A;  2RK5 A;  1N60 C;  1N63 C;  5AE2 A;  3NVV B;  4MLA A;  3I99 A;  3C0P A;  5G5H B;  5AE1 A;  3BW7 A;  4O95 A;  1W1M A;  1DIQ A;  1N5X A;  1MBT A;  1JRO A;  1SB3 B;  1RM6 B;  2W3R A;  2O3G A;  1T3Q C;  2BVG A;  2VAO A;  2P13 A;  3AN1 A;  3S1C A;  1FIQ B;  4ML8 A;  5ADZ A;  1I19 A;  4DNS A;  4PWC A;  3TX1 A;  3NVY B;  5D79 A;  3LLB A;  3B9J B;  1F0X A;  1V97 A;  3NVZ B;  4EC3 A;  3PM9 A;  3NRZ B;  2OAI A;  2MBR A;  1DII A;  4PYT A;  3TSH A;  1W1O A;  1WVE A;  3NVW B;  4HG0 A;  4OAL A;  2Q4W A;  3HRD C;  3D2D A;  2E3T A;  1W1K A;  3AM9 A;  4PWB A;  4PVJ A;  2VFU A;  1N62 C;  1JRP A;  3W8X A;  3ETR B;  1QLT A;  2GQU A;  5FXD A;  1N5W C;  3GSY A;  3SR6 B;  1ZR6 A;  1HSK A;  4PVE A;  3S1E A;  3JS8 A;  2QKN A;  3D2J A;  4BC7 A;  3FW9 A;  1FFU C;  2QPM A;  3EUB 3;  2P4P A;  2BVF A;  3S1F A;  1N61 C;  1VDV A;  1W1S A;  3KJM A;  3S1D A;  2NQW A;  1WYG A;  3FWA A;  2VFV A;  2W54 A;  2PLS A;  3LAE A;  3FW7 A;  1W1J A;  2VFS A;  2W3S A;  4JB1 A;  3W8Z A;  1E8F A;  2VFR A;  3AMZ A;  5FXP A;  1E0Y A;  1ZXI C;  5FXF A;  4BCA A;  1WVF A;  2R8D A;  4JAY A;  4PZF A;  2AXR A;  2Q85 A;  5AE3 A;  5HQX A;  1W1L A;  3VTE A;  4BBY A;  1AHU A;  1DZN A;  3NS1 B;  2VFT A;  1FFV C;  2GQT A; 
#chains in the Genus database with same CATH topology
 5HMR A;  2P3H A;  3RJA A;  1AHV A;  1E8G A;  1QLU A;  1W1R A;  3EJB B;  1VAO A;  3TSJ A;  1AHZ A;  3DQ0 A;  2W55 A;  1FO4 A;  1UXY A;  2YVS A;  4XLO A;  3D2H A;  5HHZ A;  1W1Q A;  1E8H A;  5L6G A;  4PVK A;  3DED A;  4UD8 A;  4BC9 A;  2EXR A;  2R2Z A;  5G5G B;  2IPI A;  2BVH A;  2PLI A;  1MBB A;  2Y08 A;  5AWV A;  4ZOH B;  2I0K A;  5I1W A;  4PVH A;  5FXE A;  3FW8 A;  3RJ8 A;  3W8W A;  2RK5 A;  1N60 C;  1N63 C;  5AE2 A;  3POP A;  3NVV B;  4MLA A;  3I99 A;  3C0P A;  5G5H B;  5AE1 A;  3BW7 A;  4O95 A;  1W1M A;  2UUV A;  1DIQ A;  3PQB A;  5L6F A;  1N5X A;  1MBT A;  1JRO A;  5K8E A;  1SB3 B;  1RM6 B;  2W3R A;  2O3G A;  1T3Q C;  2BVG A;  2VAO A;  2P13 A;  2WDW A;  3AN1 A;  3S1C A;  3EJE B;  1FIQ B;  4ML8 A;  5ADZ A;  5I1V A;  1I19 A;  4DNS A;  4PWC A;  3TX1 A;  3NVY B;  5D79 A;  3LLB A;  2UUU A;  3B9J B;  1F0X A;  1V97 A;  3NVZ B;  4EC3 A;  3PM9 A;  3NRZ B;  2OAI A;  2MBR A;  1DII A;  4PYT A;  3TSH A;  1W1O A;  1WVE A;  3NVW B;  4HG0 A;  2Y4G A;  4OAL A;  2Q4W A;  3HRD C;  3D2D A;  3HSU A;  2E3T A;  1W1K A;  3AM9 A;  4PWB A;  4PVJ A;  3EJD B;  2VFU A;  1N62 C;  1JRP A;  3W8X A;  3ETR B;  1QLT A;  2GQU A;  5FXD A;  1N5W C;  3GSY A;  3SR6 B;  1ZR6 A;  1HSK A;  4PVE A;  3S1E A;  3JS8 A;  2QKN A;  3D2J A;  4BC7 A;  3FW9 A;  1FFU C;  2QPM A;  3EUB 3;  2P4P A;  2BVF A;  3S1F A;  2Y3S A;  1N61 C;  1VDV A;  1W1S A;  3KJM A;  3S1D A;  2NQW A;  1WYG A;  3FWA A;  2VFV A;  2W54 A;  2PLS A;  3LAE A;  3FW7 A;  1W1J A;  2VFS A;  2W3S A;  4JB1 A;  3W8Z A;  1E8F A;  2VFR A;  3AMZ A;  5FXP A;  1E0Y A;  1ZXI C;  5FXF A;  4BCA A;  1WVF A;  2R8D A;  2Y3R A;  4JAY A;  4PZF A;  2AXR A;  2Q85 A;  5AE3 A;  5HQX A;  1W1L A;  3VTE A;  4BBY A;  1AHU A;  1DZN A;  3NS1 B;  2VFT A;  1FFV C;  2GQT A; 
#chains in the Genus database with same CATH homology
 5HMR A;  2P3H A;  3RJA A;  1AHV A;  1E8G A;  1QLU A;  1W1R A;  1VAO A;  3TSJ A;  1AHZ A;  3DQ0 A;  2W55 A;  1FO4 A;  1UXY A;  2YVS A;  4XLO A;  3D2H A;  5HHZ A;  1W1Q A;  1E8H A;  5L6G A;  4PVK A;  3DED A;  4UD8 A;  4BC9 A;  2EXR A;  2R2Z A;  5G5G B;  2IPI A;  2BVH A;  2PLI A;  1MBB A;  2Y08 A;  5AWV A;  4ZOH B;  2I0K A;  5I1W A;  4PVH A;  5FXE A;  3FW8 A;  3RJ8 A;  3W8W A;  2RK5 A;  1N60 C;  1N63 C;  5AE2 A;  3POP A;  3NVV B;  4MLA A;  3I99 A;  3C0P A;  5G5H B;  5AE1 A;  3BW7 A;  4O95 A;  1W1M A;  2UUV A;  1DIQ A;  3PQB A;  5L6F A;  1N5X A;  1MBT A;  1JRO A;  5K8E A;  1SB3 B;  1RM6 B;  2W3R A;  2O3G A;  1T3Q C;  2BVG A;  2VAO A;  2P13 A;  2WDW A;  3AN1 A;  3S1C A;  1FIQ B;  4ML8 A;  5ADZ A;  5I1V A;  1I19 A;  4DNS A;  4PWC A;  3TX1 A;  3NVY B;  5D79 A;  3LLB A;  2UUU A;  3B9J B;  1F0X A;  1V97 A;  3NVZ B;  4EC3 A;  3PM9 A;  3NRZ B;  2OAI A;  2MBR A;  1DII A;  4PYT A;  3TSH A;  1W1O A;  1WVE A;  3NVW B;  4HG0 A;  2Y4G A;  4OAL A;  2Q4W A;  3HRD C;  3D2D A;  3HSU A;  2E3T A;  1W1K A;  3AM9 A;  4PWB A;  4PVJ A;  2VFU A;  1N62 C;  1JRP A;  3W8X A;  3ETR B;  1QLT A;  2GQU A;  5FXD A;  1N5W C;  3GSY A;  3SR6 B;  1ZR6 A;  1HSK A;  4PVE A;  3S1E A;  3JS8 A;  2QKN A;  3D2J A;  4BC7 A;  3FW9 A;  1FFU C;  2QPM A;  3EUB 3;  2P4P A;  2BVF A;  3S1F A;  2Y3S A;  1N61 C;  1VDV A;  1W1S A;  3KJM A;  3S1D A;  2NQW A;  1WYG A;  3FWA A;  2VFV A;  2W54 A;  2PLS A;  3LAE A;  3FW7 A;  1W1J A;  2VFS A;  2W3S A;  4JB1 A;  3W8Z A;  1E8F A;  2VFR A;  3AMZ A;  5FXP A;  1E0Y A;  1ZXI C;  5FXF A;  4BCA A;  1WVF A;  2R8D A;  2Y3R A;  4JAY A;  4PZF A;  2AXR A;  2Q85 A;  5AE3 A;  5HQX A;  1W1L A;  3VTE A;  4BBY A;  1AHU A;  1DZN A;  3NS1 B;  2VFT A;  1FFV C;  2GQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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