2Q4WA

Ensemble refinement of the protein crystal structure of cytokinin oxidase/dehydrogenase (ckx) from arabidopsis thaliana at5g21482
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
491
structure length
491
Chain Sequence
LNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMAEGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 7
publication title Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 137
structure length 491
sequence length 491
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2q4wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2q4wA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 2q4wA03
1FFUC 4ZOHB 1AHZA 1T3QC 1N5XA 2EXRA 2VFSA 1E0YA 4ML8A 3FW8A 2VFRA 3TX1A 1I19A 1AHUA 3TSJA 5ADZA 2VFTA 1DZNA 3VTEA 5AE3A 2BVGA 1N61C 2Q4WA 3D2DA 2O3GA 3FWAA 3BW7A 5HMRA 3D2HA 3KJMA 1W1LA 5AE1A 1JROA 3NVYB 4PVEA 2RK5A 2MBRA 1W1RA 5HQXA 3S1CA 3NVWB 3SR6B 4UD8A 1RM6B 1W1KA 2YVSA 2VFVA 4OALA 1W1MA 1VAOA 5FXEA 1F0XA 1W1SA 5G5GB 5AE2A 1E8HA 2PLIA 1MBBA 4O95A 1E8FA 5FXDA 2GQTA 2GQUA 3S1FA 4JB1A 1V97A 1JRPA 2BVFA 3AM9A 2BVHA 2QKNA 4JAYA 4BC7A 2E3TA 3PM9A 4PYTA 3NS1B 2Q85A 1W1JA 2PLSA 3FW7A 3S1EA 1W1OA 2R2ZA 2W55A 2W3RA 3NVVB 1HSKA 1WVFA 2VAOA 3JS8A 1FIQB 4DNSA 1N5WC 3C0PA 3HRDC 4HG0A 1DIIA 3ETRB 3I99A 5G5HB 1N63C 1W1QA 3GSYA 3TSHA 4BC9A 2W3SA 4BCAA 1UXYA 4PWCA 1FFVC 1WYGA 3EUB3 4PWBA 2P13A 4BBYA 4MLAA 4XLOA 3B9JB 5HHZA 1E8GA 1ZR6A 3DEDA 2R8DA 1QLTA 3NVZB 4PZFA 2P4PA 3AMZA 3D2JA 2QPMA 1DIQA 3NRZB 1SB3B 1N62C 4PVHA 1N60C 3FW9A 2OAIA 5FXFA 1AHVA 3S1DA 3LAEA 4PVKA 1FO4A 4EC3A 1VDVA 1ZXIC 2NQWA 1QLUA 1WVEA 3W8XA 3W8ZA 3AN1A 2W54A 3LLBA 4PVJA 2AXRA 1MBTA 2VFUA 3DQ0A 2I0KA 5D79A 3W8WA 5FXPA 2P3HA
chains in the Genus database with same CATH superfamily
1FFUC 4ZOHB 1AHZA 1T3QC 1N5XA 2EXRA 2VFSA 2IPIA 3POPA 1E0YA 3RJ8A 4ML8A 3FW8A 2VFRA 2Y3RA 3TX1A 1I19A 1AHUA 3TSJA 5ADZA 2VFTA 1DZNA 3VTEA 3RJAA 2Y4GA 5AE3A 2BVGA 1N61C 2Q4WA 3D2DA 2O3GA 2UUVA 3FWAA 3BW7A 5HMRA 3D2HA 3KJMA 5I1VA 5L6GA 1W1LA 5AE1A 1JROA 3NVYB 4PVEA 2RK5A 5I1WA 2MBRA 3HSUA 1W1RA 3NVWB 5HQXA 3S1CA 3SR6B 4UD8A 1RM6B 1W1KA 2YVSA 2VFVA 4OALA 1W1MA 1VAOA 5FXEA 1F0XA 1W1SA 5G5GB 5AE2A 1E8HA 2PLIA 1MBBA 4O95A 1E8FA 5FXDA 2GQTA 2GQUA 3S1FA 4JB1A 1V97A 1JRPA 2BVFA 3AM9A 2Y3SA 2BVHA 2QKNA 4JAYA 4BC7A 2E3TA 3PM9A 4PYTA 3NS1B 3EJBB 2Q85A 1W1JA 2PLSA 3FW7A 3S1EA 1W1OA 2R2ZA 2UUUA 2W55A 3EJDB 2W3RA 3NVVB 1HSKA 3EJEB 1WVFA 2VAOA 3PQBA 3JS8A 1FIQB 4DNSA 1N5WC 2Y08A 3C0PA 5L6FA 3HRDC 4HG0A 1DIIA 3ETRB 3I99A 5G5HB 1N63C 1W1QA 3GSYA 3TSHA 4BC9A 2W3SA 4BCAA 1UXYA 4PWCA 1FFVC 1WYGA 3EUB3 4PWBA 5K8EA 2P13A 4BBYA 4MLAA 4XLOA 3B9JB 5HHZA 1E8GA 1ZR6A 3DEDA 2R8DA 1QLTA 5AWVA 3NVZB 4PZFA 2P4PA 3AMZA 3D2JA 2QPMA 1DIQA 3NRZB 1SB3B 1N62C 4PVHA 1N60C 3FW9A 2OAIA 5FXFA 1AHVA 3S1DA 3LAEA 4PVKA 1FO4A 4EC3A 1VDVA 1ZXIC 2NQWA 1QLUA 1WVEA 3W8XA 3W8ZA 3AN1A 2W54A 3LLBA 4PVJA 2AXRA 1MBTA 2VFUA 3DQ0A 2I0KA 2WDWA 5D79A 3W8WA 5FXPA 2P3HA
chains in the Genus database with same CATH topology
1FFUC 4ZOHB 1AHZA 1T3QC 1N5XA 2EXRA 2VFSA 2IPIA 3POPA 1E0YA 3RJ8A 4ML8A 3FW8A 2VFRA 2Y3RA 3TX1A 1I19A 1AHUA 3TSJA 5ADZA 2VFTA 1DZNA 3VTEA 3RJAA 2Y4GA 5AE3A 2BVGA 1N61C 2Q4WA 3D2DA 2O3GA 2UUVA 3FWAA 3BW7A 5HMRA 3D2HA 3KJMA 5I1VA 5L6GA 1W1LA 5AE1A 1JROA 3NVYB 4PVEA 2RK5A 5I1WA 2MBRA 3HSUA 1W1RA 5HQXA 3S1CA 3NVWB 3SR6B 4UD8A 1RM6B 1W1KA 2YVSA 2VFVA 4OALA 1W1MA 1VAOA 5FXEA 1F0XA 1W1SA 5G5GB 5AE2A 1E8HA 2PLIA 1MBBA 4O95A 1E8FA 5FXDA 2GQTA 2GQUA 3S1FA 4JB1A 1V97A 1JRPA 2BVFA 3AM9A 2Y3SA 2BVHA 2QKNA 4JAYA 4BC7A 2E3TA 3PM9A 4PYTA 3NS1B 2Q85A 1W1JA 2PLSA 3FW7A 3S1EA 1W1OA 2R2ZA 2UUUA 2W55A 2W3RA 3NVVB 1HSKA 3PQBA 1WVFA 2VAOA 3JS8A 1FIQB 4DNSA 1N5WC 2Y08A 3C0PA 5L6FA 3HRDC 4HG0A 1DIIA 3ETRB 3I99A 5G5HB 1N63C 1W1QA 3GSYA 3TSHA 4BC9A 2W3SA 4BCAA 1UXYA 4PWCA 1FFVC 1WYGA 3EUB3 4PWBA 5K8EA 2P13A 4BBYA 4MLAA 4XLOA 3B9JB 5HHZA 1E8GA 1ZR6A 3DEDA 2R8DA 1QLTA 5AWVA 3NVZB 4PZFA 2P4PA 3AMZA 3D2JA 2QPMA 1DIQA 3NRZB 1SB3B 1N62C 4PVHA 1N60C 3FW9A 2OAIA 5FXFA 1AHVA 3S1DA 3LAEA 4PVKA 1FO4A 4EC3A 1VDVA 1ZXIC 2NQWA 1QLUA 1WVEA 3W8XA 3W8ZA 3AN1A 2W54A 3LLBA 4PVJA 2AXRA 1MBTA 2VFUA 3DQ0A 2I0KA 2WDWA 5D79A 3W8WA 5FXPA 2P3HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FFU C;  4ZOH B;  1AHZ A;  1T3Q C;  1N5X A;  2EXR A;  2VFS A;  1E0Y A;  4ML8 A;  3FW8 A;  2VFR A;  3TX1 A;  1I19 A;  1AHU A;  3TSJ A;  5ADZ A;  2VFT A;  1DZN A;  3VTE A;  5AE3 A;  2BVG A;  1N61 C;  2Q4W A;  3D2D A;  2O3G A;  3FWA A;  3BW7 A;  5HMR A;  3D2H A;  3KJM A;  1W1L A;  5AE1 A;  1JRO A;  3NVY B;  4PVE A;  2RK5 A;  2MBR A;  1W1R A;  5HQX A;  3S1C A;  3NVW B;  3SR6 B;  4UD8 A;  1RM6 B;  1W1K A;  2YVS A;  2VFV A;  4OAL A;  1W1M A;  1VAO A;  5FXE A;  1F0X A;  1W1S A;  5G5G B;  5AE2 A;  1E8H A;  2PLI A;  1MBB A;  4O95 A;  1E8F A;  5FXD A;  2GQT A;  2GQU A;  3S1F A;  4JB1 A;  1V97 A;  1JRP A;  2BVF A;  3AM9 A;  2BVH A;  2QKN A;  4JAY A;  4BC7 A;  2E3T A;  3PM9 A;  4PYT A;  3NS1 B;  2Q85 A;  1W1J A;  2PLS A;  3FW7 A;  3S1E A;  1W1O A;  2R2Z A;  2W55 A;  2W3R A;  3NVV B;  1HSK A;  1WVF A;  2VAO A;  3JS8 A;  1FIQ B;  4DNS A;  1N5W C;  3C0P A;  3HRD C;  4HG0 A;  1DII A;  3ETR B;  3I99 A;  5G5H B;  1N63 C;  1W1Q A;  3GSY A;  3TSH A;  4BC9 A;  2W3S A;  4BCA A;  1UXY A;  4PWC A;  1FFV C;  1WYG A;  3EUB 3;  4PWB A;  2P13 A;  4BBY A;  4MLA A;  4XLO A;  3B9J B;  5HHZ A;  1E8G A;  1ZR6 A;  3DED A;  2R8D A;  1QLT A;  3NVZ B;  4PZF A;  2P4P A;  3AMZ A;  3D2J A;  2QPM A;  1DIQ A;  3NRZ B;  1SB3 B;  1N62 C;  4PVH A;  1N60 C;  3FW9 A;  2OAI A;  5FXF A;  1AHV A;  3S1D A;  3LAE A;  4PVK A;  1FO4 A;  4EC3 A;  1VDV A;  1ZXI C;  2NQW A;  1QLU A;  1WVE A;  3W8X A;  3W8Z A;  3AN1 A;  2W54 A;  3LLB A;  4PVJ A;  2AXR A;  1MBT A;  2VFU A;  3DQ0 A;  2I0K A;  5D79 A;  3W8W A;  5FXP A;  2P3H A; 
#chains in the Genus database with same CATH topology
 1FFU C;  4ZOH B;  1AHZ A;  1T3Q C;  1N5X A;  2EXR A;  2VFS A;  2IPI A;  3POP A;  1E0Y A;  3RJ8 A;  4ML8 A;  3FW8 A;  2VFR A;  2Y3R A;  3TX1 A;  1I19 A;  1AHU A;  3TSJ A;  5ADZ A;  2VFT A;  1DZN A;  3VTE A;  3RJA A;  2Y4G A;  5AE3 A;  2BVG A;  1N61 C;  2Q4W A;  3D2D A;  2O3G A;  2UUV A;  3FWA A;  3BW7 A;  5HMR A;  3D2H A;  3KJM A;  5I1V A;  5L6G A;  1W1L A;  5AE1 A;  1JRO A;  3NVY B;  4PVE A;  2RK5 A;  5I1W A;  2MBR A;  3HSU A;  1W1R A;  3NVW B;  5HQX A;  3S1C A;  3SR6 B;  4UD8 A;  1RM6 B;  1W1K A;  2YVS A;  2VFV A;  4OAL A;  1W1M A;  1VAO A;  5FXE A;  1F0X A;  1W1S A;  5G5G B;  5AE2 A;  1E8H A;  2PLI A;  1MBB A;  4O95 A;  1E8F A;  5FXD A;  2GQT A;  2GQU A;  3S1F A;  4JB1 A;  1V97 A;  1JRP A;  2BVF A;  3AM9 A;  2Y3S A;  2BVH A;  2QKN A;  4JAY A;  4BC7 A;  2E3T A;  3PM9 A;  4PYT A;  3NS1 B;  3EJB B;  2Q85 A;  1W1J A;  2PLS A;  3FW7 A;  3S1E A;  1W1O A;  2R2Z A;  2UUU A;  2W55 A;  3EJD B;  2W3R A;  3NVV B;  1HSK A;  3EJE B;  1WVF A;  2VAO A;  3PQB A;  3JS8 A;  1FIQ B;  4DNS A;  1N5W C;  2Y08 A;  3C0P A;  5L6F A;  3HRD C;  4HG0 A;  1DII A;  3ETR B;  3I99 A;  5G5H B;  1N63 C;  1W1Q A;  3GSY A;  3TSH A;  4BC9 A;  2W3S A;  4BCA A;  1UXY A;  4PWC A;  1FFV C;  1WYG A;  3EUB 3;  4PWB A;  5K8E A;  2P13 A;  4BBY A;  4MLA A;  4XLO A;  3B9J B;  5HHZ A;  1E8G A;  1ZR6 A;  3DED A;  2R8D A;  1QLT A;  5AWV A;  3NVZ B;  4PZF A;  2P4P A;  3AMZ A;  3D2J A;  2QPM A;  1DIQ A;  3NRZ B;  1SB3 B;  1N62 C;  4PVH A;  1N60 C;  3FW9 A;  2OAI A;  5FXF A;  1AHV A;  3S1D A;  3LAE A;  4PVK A;  1FO4 A;  4EC3 A;  1VDV A;  1ZXI C;  2NQW A;  1QLU A;  1WVE A;  3W8X A;  3W8Z A;  3AN1 A;  2W54 A;  3LLB A;  4PVJ A;  2AXR A;  1MBT A;  2VFU A;  3DQ0 A;  2I0K A;  2WDW A;  5D79 A;  3W8W A;  5FXP A;  2P3H A; 
#chains in the Genus database with same CATH homology
 1FFU C;  4ZOH B;  1AHZ A;  1T3Q C;  1N5X A;  2EXR A;  2VFS A;  2IPI A;  3POP A;  1E0Y A;  3RJ8 A;  4ML8 A;  3FW8 A;  2VFR A;  2Y3R A;  3TX1 A;  1I19 A;  1AHU A;  3TSJ A;  5ADZ A;  2VFT A;  1DZN A;  3VTE A;  3RJA A;  2Y4G A;  5AE3 A;  2BVG A;  1N61 C;  2Q4W A;  3D2D A;  2O3G A;  2UUV A;  3FWA A;  3BW7 A;  5HMR A;  3D2H A;  3KJM A;  5I1V A;  5L6G A;  1W1L A;  5AE1 A;  1JRO A;  3NVY B;  4PVE A;  2RK5 A;  5I1W A;  2MBR A;  3HSU A;  1W1R A;  5HQX A;  3S1C A;  3NVW B;  3SR6 B;  4UD8 A;  1RM6 B;  1W1K A;  2YVS A;  2VFV A;  4OAL A;  1W1M A;  1VAO A;  5FXE A;  1F0X A;  1W1S A;  5G5G B;  5AE2 A;  1E8H A;  2PLI A;  1MBB A;  4O95 A;  1E8F A;  5FXD A;  2GQT A;  2GQU A;  3S1F A;  4JB1 A;  1V97 A;  1JRP A;  2BVF A;  3AM9 A;  2Y3S A;  2BVH A;  2QKN A;  4JAY A;  4BC7 A;  2E3T A;  3PM9 A;  4PYT A;  3NS1 B;  2Q85 A;  1W1J A;  2PLS A;  3FW7 A;  3S1E A;  1W1O A;  2R2Z A;  2UUU A;  2W55 A;  2W3R A;  3NVV B;  1HSK A;  3PQB A;  1WVF A;  2VAO A;  3JS8 A;  1FIQ B;  4DNS A;  1N5W C;  2Y08 A;  3C0P A;  5L6F A;  3HRD C;  4HG0 A;  1DII A;  3ETR B;  3I99 A;  5G5H B;  1N63 C;  1W1Q A;  3GSY A;  3TSH A;  4BC9 A;  2W3S A;  4BCA A;  1UXY A;  4PWC A;  1FFV C;  1WYG A;  3EUB 3;  4PWB A;  5K8E A;  2P13 A;  4BBY A;  4MLA A;  4XLO A;  3B9J B;  5HHZ A;  1E8G A;  1ZR6 A;  3DED A;  2R8D A;  1QLT A;  5AWV A;  3NVZ B;  4PZF A;  2P4P A;  3AMZ A;  3D2J A;  2QPM A;  1DIQ A;  3NRZ B;  1SB3 B;  1N62 C;  4PVH A;  1N60 C;  3FW9 A;  2OAI A;  5FXF A;  1AHV A;  3S1D A;  3LAE A;  4PVK A;  1FO4 A;  4EC3 A;  1VDV A;  1ZXI C;  2NQW A;  1QLU A;  1WVE A;  3W8X A;  3W8Z A;  3AN1 A;  2W54 A;  3LLB A;  4PVJ A;  2AXR A;  1MBT A;  2VFU A;  3DQ0 A;  2I0K A;  2WDW A;  5D79 A;  3W8W A;  5FXP A;  2P3H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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