1E0YA

Structure of the d170s/t457e double mutant of vanillyl-alcohol oxidase
Total Genus 178
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGEFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Inversion of Stereospecificity in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavoenzyme
total genus 178
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e0yA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e0yA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e0yA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e0yA03
2VFRA 5ADZA 1V97A 1VDVA 3D2DA 3FW7A 3NVZB 3C0PA 3S1FA 1FIQB 1JRPA 1QLTA 1ZXIC 1W1QA 1E0YA 3AMZA 4O95A 3W8WA 1W1LA 2NQWA 1N62C 3NS1B 5FXFA 1MBBA 1N5XA 2E3TA 1W1JA 3EUB3 2VFTA 3B9JB 2VFSA 2GQTA 2W55A 3ETRB 3TX1A 1N61C 2R2ZA 3NRZB 1QLUA 2GQUA 2W3SA 4PWBA 2BVFA 4UD8A 4JB1A 2VFVA 5FXPA 1WVFA 3TSJA 3S1CA 4MLAA 2W3RA 4XLOA 3TSHA 3FWAA 1ZR6A 1JROA 2RK5A 4BC9A 3NVYB 3I99A 2P4PA 5AE2A 1E8HA 1W1KA 3D2HA 4PZFA 1N63C 2QKNA 5D79A 3AN1A 3FW8A 3D2JA 2VFUA 3HRDC 2I0KA 4JAYA 5G5HB 3VTEA 2QPMA 3NVVB 1W1RA 3KJMA 4BCAA 1UXYA 2P13A 1W1SA 3DEDA 1AHZA 1SB3B 2PLIA 4DNSA 4PVKA 1HSKA 3FW9A 2R8DA 2VAOA 2YVSA 3JS8A 1E8FA 1N5WC 3AM9A 1RM6B 4PVEA 3W8ZA 3SR6B 1FFUC 1FFVC 1T3QC 2EXRA 3DQ0A 1WVEA 4HG0A 2AXRA 2OAIA 2W54A 3S1EA 5FXEA 3W8XA 1W1OA 1F0XA 5HMRA 4PWCA 3GSYA 2BVHA 3NVWB 4OALA 2MBRA 5AE3A 2O3GA 5HQXA 2PLSA 4EC3A 5HHZA 1VAOA 1MBTA 1AHUA 2Q4WA 3BW7A 4ZOHB 2P3HA 1DIQA 1WYGA 1FO4A 1DIIA 4BBYA 1I19A 1AHVA 4PYTA 3PM9A 4PVHA 4PVJA 3S1DA 1DZNA 2Q85A 1W1MA 5G5GB 3LLBA 1E8GA 2BVGA 5FXDA 5AE1A 3LAEA 1N60C 4ML8A 4BC7A
chains in the Genus database with same CATH superfamily
2VFRA 5ADZA 1V97A 3EJBB 1VDVA 3D2DA 3FW7A 3NVZB 3C0PA 3S1FA 1FIQB 1JRPA 1QLTA 1ZXIC 1W1QA 1E0YA 3AMZA 4O95A 3W8WA 1W1LA 2NQWA 1N62C 3NS1B 5FXFA 5L6FA 1MBBA 1N5XA 2E3TA 1W1JA 3EUB3 2VFTA 3B9JB 2VFSA 2GQTA 2W55A 3ETRB 3TX1A 1N61C 2R2ZA 3NRZB 1QLUA 2GQUA 2W3SA 4PWBA 2BVFA 4UD8A 4JB1A 2VFVA 5FXPA 2IPIA 3EJDB 1WVFA 2WDWA 3TSJA 3S1CA 3HSUA 2UUVA 4MLAA 2W3RA 4XLOA 3TSHA 3FWAA 1ZR6A 1JROA 2RK5A 4BC9A 3NVYB 5L6GA 3I99A 2P4PA 5AE2A 1E8HA 1W1KA 3D2HA 4PZFA 1N63C 2QKNA 5D79A 3AN1A 3FW8A 3D2JA 2VFUA 3HRDC 2I0KA 4JAYA 5G5HB 3VTEA 2QPMA 3NVVB 1W1RA 3KJMA 3PQBA 2UUUA 4BCAA 1UXYA 2P13A 1W1SA 2Y3SA 3DEDA 1AHZA 1SB3B 2PLIA 4DNSA 4PVKA 3RJ8A 1HSKA 3FW9A 2R8DA 2VAOA 2YVSA 3JS8A 1E8FA 1N5WC 3AM9A 1RM6B 4PVEA 3W8ZA 3SR6B 1FFUC 1FFVC 1T3QC 2EXRA 2Y08A 5I1WA 3DQ0A 3EJEB 1WVEA 4HG0A 5I1VA 2AXRA 2OAIA 2W54A 3S1EA 5FXEA 3W8XA 1W1OA 1F0XA 5HMRA 4PWCA 3GSYA 2BVHA 3NVWB 4OALA 2MBRA 5AE3A 2O3GA 5HQXA 2PLSA 4EC3A 5HHZA 3RJAA 1VAOA 1MBTA 1AHUA 2Q4WA 3BW7A 4ZOHB 2P3HA 1DIQA 1WYGA 1FO4A 1DIIA 4BBYA 1I19A 3POPA 1AHVA 4PYTA 3PM9A 4PVHA 4PVJA 3S1DA 1DZNA 2Q85A 1W1MA 5G5GB 5K8EA 3LLBA 2Y4GA 2Y3RA 1E8GA 2BVGA 5FXDA 5AE1A 3LAEA 1N60C 5AWVA 4ML8A 4BC7A
chains in the Genus database with same CATH topology
2VFRA 5ADZA 1V97A 1VDVA 3D2DA 3FW7A 3NVZB 3C0PA 3S1FA 1FIQB 1JRPA 1QLTA 1ZXIC 1W1QA 1E0YA 3AMZA 4O95A 3W8WA 1W1LA 2NQWA 1N62C 3NS1B 5FXFA 5L6FA 1MBBA 1N5XA 2E3TA 1W1JA 3EUB3 2VFTA 3B9JB 2VFSA 2GQTA 2W55A 3ETRB 3TX1A 1N61C 2R2ZA 3NRZB 1QLUA 2GQUA 2W3SA 4PWBA 2BVFA 4UD8A 4JB1A 2VFVA 5FXPA 2IPIA 1WVFA 2WDWA 3TSJA 3S1CA 3HSUA 2UUVA 4MLAA 2W3RA 4XLOA 3TSHA 3FWAA 1ZR6A 1JROA 2RK5A 4BC9A 3NVYB 5L6GA 3I99A 2P4PA 5AE2A 1E8HA 1W1KA 3D2HA 4PZFA 1N63C 2QKNA 5D79A 3AN1A 3FW8A 3D2JA 2VFUA 3HRDC 2I0KA 4JAYA 5G5HB 3VTEA 2QPMA 3NVVB 1W1RA 3KJMA 3PQBA 2UUUA 4BCAA 1UXYA 2P13A 1W1SA 2Y3SA 3DEDA 1AHZA 1SB3B 2PLIA 4DNSA 4PVKA 3RJ8A 1HSKA 3FW9A 2R8DA 2VAOA 2YVSA 3JS8A 1E8FA 1N5WC 3AM9A 1RM6B 4PVEA 3W8ZA 3SR6B 1FFUC 1FFVC 1T3QC 2EXRA 2Y08A 5I1WA 3DQ0A 1WVEA 4HG0A 5I1VA 2AXRA 2OAIA 2W54A 3S1EA 5FXEA 3W8XA 1W1OA 1F0XA 5HMRA 4PWCA 3GSYA 2BVHA 3NVWB 4OALA 2MBRA 5AE3A 2O3GA 5HQXA 2PLSA 4EC3A 5HHZA 3RJAA 1VAOA 1MBTA 1AHUA 2Q4WA 3BW7A 4ZOHB 2P3HA 1DIQA 1WYGA 1FO4A 1DIIA 4BBYA 1I19A 3POPA 1AHVA 4PYTA 3PM9A 4PVHA 4PVJA 3S1DA 1DZNA 2Q85A 1W1MA 5G5GB 5K8EA 3LLBA 2Y4GA 2Y3RA 1E8GA 2BVGA 5FXDA 5AE1A 3LAEA 1N60C 5AWVA 4ML8A 4BC7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFR A;  5ADZ A;  1V97 A;  1VDV A;  3D2D A;  3FW7 A;  3NVZ B;  3C0P A;  3S1F A;  1FIQ B;  1JRP A;  1QLT A;  1ZXI C;  1W1Q A;  1E0Y A;  3AMZ A;  4O95 A;  3W8W A;  1W1L A;  2NQW A;  1N62 C;  3NS1 B;  5FXF A;  1MBB A;  1N5X A;  2E3T A;  1W1J A;  3EUB 3;  2VFT A;  3B9J B;  2VFS A;  2GQT A;  2W55 A;  3ETR B;  3TX1 A;  1N61 C;  2R2Z A;  3NRZ B;  1QLU A;  2GQU A;  2W3S A;  4PWB A;  2BVF A;  4UD8 A;  4JB1 A;  2VFV A;  5FXP A;  1WVF A;  3TSJ A;  3S1C A;  4MLA A;  2W3R A;  4XLO A;  3TSH A;  3FWA A;  1ZR6 A;  1JRO A;  2RK5 A;  4BC9 A;  3NVY B;  3I99 A;  2P4P A;  5AE2 A;  1E8H A;  1W1K A;  3D2H A;  4PZF A;  1N63 C;  2QKN A;  5D79 A;  3AN1 A;  3FW8 A;  3D2J A;  2VFU A;  3HRD C;  2I0K A;  4JAY A;  5G5H B;  3VTE A;  2QPM A;  3NVV B;  1W1R A;  3KJM A;  4BCA A;  1UXY A;  2P13 A;  1W1S A;  3DED A;  1AHZ A;  1SB3 B;  2PLI A;  4DNS A;  4PVK A;  1HSK A;  3FW9 A;  2R8D A;  2VAO A;  2YVS A;  3JS8 A;  1E8F A;  1N5W C;  3AM9 A;  1RM6 B;  4PVE A;  3W8Z A;  3SR6 B;  1FFU C;  1FFV C;  1T3Q C;  2EXR A;  3DQ0 A;  1WVE A;  4HG0 A;  2AXR A;  2OAI A;  2W54 A;  3S1E A;  5FXE A;  3W8X A;  1W1O A;  1F0X A;  5HMR A;  4PWC A;  3GSY A;  2BVH A;  3NVW B;  4OAL A;  2MBR A;  5AE3 A;  2O3G A;  5HQX A;  2PLS A;  4EC3 A;  5HHZ A;  1VAO A;  1MBT A;  1AHU A;  2Q4W A;  3BW7 A;  4ZOH B;  2P3H A;  1DIQ A;  1WYG A;  1FO4 A;  1DII A;  4BBY A;  1I19 A;  1AHV A;  4PYT A;  3PM9 A;  4PVH A;  4PVJ A;  3S1D A;  1DZN A;  2Q85 A;  1W1M A;  5G5G B;  3LLB A;  1E8G A;  2BVG A;  5FXD A;  5AE1 A;  3LAE A;  1N60 C;  4ML8 A;  4BC7 A; 
#chains in the Genus database with same CATH topology
 2VFR A;  5ADZ A;  1V97 A;  3EJB B;  1VDV A;  3D2D A;  3FW7 A;  3NVZ B;  3C0P A;  3S1F A;  1FIQ B;  1JRP A;  1QLT A;  1ZXI C;  1W1Q A;  1E0Y A;  3AMZ A;  4O95 A;  3W8W A;  1W1L A;  2NQW A;  1N62 C;  3NS1 B;  5FXF A;  5L6F A;  1MBB A;  1N5X A;  2E3T A;  1W1J A;  3EUB 3;  2VFT A;  3B9J B;  2VFS A;  2GQT A;  2W55 A;  3ETR B;  3TX1 A;  1N61 C;  2R2Z A;  3NRZ B;  1QLU A;  2GQU A;  2W3S A;  4PWB A;  2BVF A;  4UD8 A;  4JB1 A;  2VFV A;  5FXP A;  2IPI A;  3EJD B;  1WVF A;  2WDW A;  3TSJ A;  3S1C A;  3HSU A;  2UUV A;  4MLA A;  2W3R A;  4XLO A;  3TSH A;  3FWA A;  1ZR6 A;  1JRO A;  2RK5 A;  4BC9 A;  3NVY B;  5L6G A;  3I99 A;  2P4P A;  5AE2 A;  1E8H A;  1W1K A;  3D2H A;  4PZF A;  1N63 C;  2QKN A;  5D79 A;  3AN1 A;  3FW8 A;  3D2J A;  2VFU A;  3HRD C;  2I0K A;  4JAY A;  5G5H B;  3VTE A;  2QPM A;  3NVV B;  1W1R A;  3KJM A;  3PQB A;  2UUU A;  4BCA A;  1UXY A;  2P13 A;  1W1S A;  2Y3S A;  3DED A;  1AHZ A;  1SB3 B;  2PLI A;  4DNS A;  4PVK A;  3RJ8 A;  1HSK A;  3FW9 A;  2R8D A;  2VAO A;  2YVS A;  3JS8 A;  1E8F A;  1N5W C;  3AM9 A;  1RM6 B;  4PVE A;  3W8Z A;  3SR6 B;  1FFU C;  1FFV C;  1T3Q C;  2EXR A;  2Y08 A;  5I1W A;  3DQ0 A;  3EJE B;  1WVE A;  4HG0 A;  5I1V A;  2AXR A;  2OAI A;  2W54 A;  3S1E A;  5FXE A;  3W8X A;  1W1O A;  1F0X A;  5HMR A;  4PWC A;  3GSY A;  2BVH A;  3NVW B;  4OAL A;  2MBR A;  5AE3 A;  2O3G A;  5HQX A;  2PLS A;  4EC3 A;  5HHZ A;  3RJA A;  1VAO A;  1MBT A;  1AHU A;  2Q4W A;  3BW7 A;  4ZOH B;  2P3H A;  1DIQ A;  1WYG A;  1FO4 A;  1DII A;  4BBY A;  1I19 A;  3POP A;  1AHV A;  4PYT A;  3PM9 A;  4PVH A;  4PVJ A;  3S1D A;  1DZN A;  2Q85 A;  1W1M A;  5G5G B;  5K8E A;  3LLB A;  2Y4G A;  2Y3R A;  1E8G A;  2BVG A;  5FXD A;  5AE1 A;  3LAE A;  1N60 C;  5AWV A;  4ML8 A;  4BC7 A; 
#chains in the Genus database with same CATH homology
 2VFR A;  5ADZ A;  1V97 A;  1VDV A;  3D2D A;  3FW7 A;  3NVZ B;  3C0P A;  3S1F A;  1FIQ B;  1JRP A;  1QLT A;  1ZXI C;  1W1Q A;  1E0Y A;  3AMZ A;  4O95 A;  3W8W A;  1W1L A;  2NQW A;  1N62 C;  3NS1 B;  5FXF A;  5L6F A;  1MBB A;  1N5X A;  2E3T A;  1W1J A;  3EUB 3;  2VFT A;  3B9J B;  2VFS A;  2GQT A;  2W55 A;  3ETR B;  3TX1 A;  1N61 C;  2R2Z A;  3NRZ B;  1QLU A;  2GQU A;  2W3S A;  4PWB A;  2BVF A;  4UD8 A;  4JB1 A;  2VFV A;  5FXP A;  2IPI A;  1WVF A;  2WDW A;  3TSJ A;  3S1C A;  3HSU A;  2UUV A;  4MLA A;  2W3R A;  4XLO A;  3TSH A;  3FWA A;  1ZR6 A;  1JRO A;  2RK5 A;  4BC9 A;  3NVY B;  5L6G A;  3I99 A;  2P4P A;  5AE2 A;  1E8H A;  1W1K A;  3D2H A;  4PZF A;  1N63 C;  2QKN A;  5D79 A;  3AN1 A;  3FW8 A;  3D2J A;  2VFU A;  3HRD C;  2I0K A;  4JAY A;  5G5H B;  3VTE A;  2QPM A;  3NVV B;  1W1R A;  3KJM A;  3PQB A;  2UUU A;  4BCA A;  1UXY A;  2P13 A;  1W1S A;  2Y3S A;  3DED A;  1AHZ A;  1SB3 B;  2PLI A;  4DNS A;  4PVK A;  3RJ8 A;  1HSK A;  3FW9 A;  2R8D A;  2VAO A;  2YVS A;  3JS8 A;  1E8F A;  1N5W C;  3AM9 A;  1RM6 B;  4PVE A;  3W8Z A;  3SR6 B;  1FFU C;  1FFV C;  1T3Q C;  2EXR A;  2Y08 A;  5I1W A;  3DQ0 A;  1WVE A;  4HG0 A;  5I1V A;  2AXR A;  2OAI A;  2W54 A;  3S1E A;  5FXE A;  3W8X A;  1W1O A;  1F0X A;  5HMR A;  4PWC A;  3GSY A;  2BVH A;  3NVW B;  4OAL A;  2MBR A;  5AE3 A;  2O3G A;  5HQX A;  2PLS A;  4EC3 A;  5HHZ A;  3RJA A;  1VAO A;  1MBT A;  1AHU A;  2Q4W A;  3BW7 A;  4ZOH B;  2P3H A;  1DIQ A;  1WYG A;  1FO4 A;  1DII A;  4BBY A;  1I19 A;  3POP A;  1AHV A;  4PYT A;  3PM9 A;  4PVH A;  4PVJ A;  3S1D A;  1DZN A;  2Q85 A;  1W1M A;  5G5G B;  5K8E A;  3LLB A;  2Y4G A;  2Y3R A;  1E8G A;  2BVG A;  5FXD A;  5AE1 A;  3LAE A;  1N60 C;  5AWV A;  4ML8 A;  4BC7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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