1E0YA

Structure of the d170s/t457e double mutant of vanillyl-alcohol oxidase
Total Genus 178
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGEFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Inversion of Stereospecificity in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 178
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e0yA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e0yA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e0yA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e0yA03
1N63C 1UXYA 3D2DA 3I99A 2NQWA 1N61C 1E8HA 2W3SA 4PWBA 1QLTA 1WYGA 2P3HA 4JAYA 3TX1A 1HSKA 1I19A 2P4PA 1QLUA 1SB3B 4BBYA 1FFVC 3S1FA 3S1DA 4BC9A 1F0XA 3TSJA 4XLOA 1JROA 5FXPA 1FO4A 2VFVA 4PVEA 2YVSA 3NVZB 2O3GA 5AE2A 3AN1A 4O95A 4DNSA 1W1QA 4PVKA 5ADZA 1MBBA 2W3RA 4BCAA 2QPMA 1AHVA 1W1JA 2OAIA 3D2HA 2GQTA 2VFRA 3JS8A 3EUB3 2VFUA 4PYTA 3NRZB 1WVEA 3FW9A 3NS1B 3W8XA 3B9JB 2PLIA 4PZFA 1JRPA 1N60C 2Q85A 3AM9A 5HQXA 3LAEA 1N5WC 3HRDC 4HG0A 5AE3A 2E3TA 1DZNA 3DEDA 1ZXIC 1W1SA 2W54A 3S1CA 2P13A 1AHZA 4EC3A 3VTEA 2Q4WA 2GQUA 1ZR6A 1VAOA 1FIQB 3FW8A 1RM6B 1V97A 2MBRA 2QKNA 3ETRB 1E0YA 3FW7A 2VFTA 1E8FA 3W8ZA 3PM9A 1W1OA 2BVFA 2EXRA 3C0PA 3DQ0A 5FXFA 1N5XA 1W1MA 3AMZA 3W8WA 2VFSA 3KJMA 4MLAA 1W1LA 3S1EA 1N62C 3NVYB 1T3QC 2PLSA 4JB1A 2AXRA 3SR6B 1W1KA 2R2ZA 1FFUC 5FXEA 4ML8A 5G5HB 4BC7A 3FWAA 4UD8A 1DIIA 3TSHA 3NVWB 5FXDA 5G5GB 3GSYA 2W55A 2VAOA 2BVGA 3BW7A 1W1RA 3LLBA 1AHUA 1DIQA 5AE1A 2RK5A 4OALA 4PWCA 5D79A 1E8GA 2R8DA 3NVVB 2BVHA 1VDVA 5HMRA 4PVJA 1WVFA 5HHZA 2I0KA 4ZOHB 3D2JA 1MBTA 4PVHA
chains in the Genus database with same CATH superfamily
1N63C 1UXYA 3D2DA 3I99A 2NQWA 1N61C 1E8HA 2UUUA 2W3SA 4PWBA 1QLTA 1WYGA 2P3HA 4JAYA 3TX1A 3EJEB 2Y3RA 1HSKA 1I19A 2Y3SA 2P4PA 1QLUA 1SB3B 4BBYA 1FFVC 3S1FA 3S1DA 4BC9A 1F0XA 3TSJA 4XLOA 1JROA 5FXPA 1FO4A 2VFVA 4PVEA 2YVSA 3NVZB 2O3GA 5K8EA 5AE2A 3AN1A 4O95A 4DNSA 1W1QA 4PVKA 5L6GA 3RJAA 5ADZA 1MBBA 2W3RA 4BCAA 2QPMA 1AHVA 1W1JA 2OAIA 3D2HA 2GQTA 2WDWA 5L6FA 5I1WA 2VFRA 3JS8A 3EUB3 2Y4GA 2VFUA 4PYTA 3NRZB 1WVEA 3FW9A 3NS1B 3W8XA 3B9JB 2PLIA 4PZFA 1JRPA 1N60C 2Q85A 3AM9A 5HQXA 3LAEA 1N5WC 3HRDC 4HG0A 5AE3A 2IPIA 2E3TA 1DZNA 2UUVA 3DEDA 1ZXIC 1W1SA 2W54A 3S1CA 2P13A 1AHZA 4EC3A 3VTEA 2Q4WA 2GQUA 1ZR6A 1VAOA 1FIQB 3FW8A 1RM6B 1V97A 2MBRA 2QKNA 3ETRB 3RJ8A 1E0YA 3FW7A 5AWVA 2VFTA 1E8FA 3POPA 3W8ZA 3PM9A 3HSUA 1W1OA 2BVFA 2EXRA 3C0PA 3DQ0A 5FXFA 1N5XA 1W1MA 3AMZA 3W8WA 2VFSA 3EJBB 3KJMA 4MLAA 1W1LA 3S1EA 1N62C 3NVYB 1T3QC 2PLSA 4JB1A 2AXRA 3SR6B 1W1KA 2R2ZA 1FFUC 5FXEA 4ML8A 5G5HB 4BC7A 5I1VA 3FWAA 4UD8A 1DIIA 3TSHA 3NVWB 5FXDA 5G5GB 3GSYA 2W55A 2VAOA 2BVGA 3BW7A 1W1RA 3LLBA 1AHUA 1DIQA 5AE1A 2RK5A 4OALA 4PWCA 5D79A 1E8GA 3NVVB 2R8DA 2BVHA 1VDVA 3EJDB 2Y08A 5HMRA 4PVJA 1WVFA 5HHZA 2I0KA 4ZOHB 3D2JA 3PQBA 1MBTA 4PVHA
chains in the Genus database with same CATH topology
1N63C 1UXYA 3D2DA 3I99A 2NQWA 1N61C 1E8HA 2UUUA 2W3SA 4PWBA 1QLTA 1WYGA 2P3HA 4JAYA 3TX1A 2Y3RA 1HSKA 1I19A 2Y3SA 2P4PA 1QLUA 1SB3B 4BBYA 1FFVC 3S1FA 3S1DA 4BC9A 1F0XA 3TSJA 4XLOA 1JROA 5FXPA 1FO4A 2VFVA 4PVEA 2YVSA 3NVZB 2O3GA 5K8EA 5AE2A 3AN1A 4O95A 4DNSA 1W1QA 4PVKA 5L6GA 3RJAA 5ADZA 1MBBA 2W3RA 4BCAA 2QPMA 1AHVA 1W1JA 2OAIA 3D2HA 2GQTA 2WDWA 5L6FA 5I1WA 2VFRA 3JS8A 3EUB3 2Y4GA 2VFUA 4PYTA 3NRZB 1WVEA 3FW9A 3NS1B 3W8XA 3B9JB 2PLIA 4PZFA 1JRPA 1N60C 2Q85A 3AM9A 5HQXA 3LAEA 1N5WC 3HRDC 4HG0A 5AE3A 2IPIA 2E3TA 1DZNA 2UUVA 3DEDA 1ZXIC 1W1SA 2W54A 3S1CA 2P13A 1AHZA 4EC3A 3VTEA 2Q4WA 2GQUA 1ZR6A 1VAOA 1FIQB 3FW8A 1RM6B 1V97A 2MBRA 2QKNA 3ETRB 3RJ8A 1E0YA 3FW7A 5AWVA 2VFTA 1E8FA 3POPA 3W8ZA 3PM9A 3HSUA 1W1OA 2BVFA 2EXRA 3C0PA 3DQ0A 5FXFA 1N5XA 1W1MA 3AMZA 3W8WA 2VFSA 3KJMA 4MLAA 1W1LA 3S1EA 1N62C 3NVYB 1T3QC 2PLSA 4JB1A 2AXRA 3SR6B 1W1KA 2R2ZA 1FFUC 5FXEA 4ML8A 5G5HB 4BC7A 5I1VA 3FWAA 4UD8A 1DIIA 3TSHA 3NVWB 5FXDA 5G5GB 3GSYA 2W55A 2VAOA 2BVGA 3BW7A 1W1RA 3LLBA 1AHUA 1DIQA 5AE1A 2RK5A 4OALA 4PWCA 5D79A 1E8GA 2R8DA 3NVVB 2BVHA 1VDVA 2Y08A 5HMRA 4PVJA 1WVFA 5HHZA 2I0KA 4ZOHB 3D2JA 3PQBA 1MBTA 4PVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N63 C;  1UXY A;  3D2D A;  3I99 A;  2NQW A;  1N61 C;  1E8H A;  2W3S A;  4PWB A;  1QLT A;  1WYG A;  2P3H A;  4JAY A;  3TX1 A;  1HSK A;  1I19 A;  2P4P A;  1QLU A;  1SB3 B;  4BBY A;  1FFV C;  3S1F A;  3S1D A;  4BC9 A;  1F0X A;  3TSJ A;  4XLO A;  1JRO A;  5FXP A;  1FO4 A;  2VFV A;  4PVE A;  2YVS A;  3NVZ B;  2O3G A;  5AE2 A;  3AN1 A;  4O95 A;  4DNS A;  1W1Q A;  4PVK A;  5ADZ A;  1MBB A;  2W3R A;  4BCA A;  2QPM A;  1AHV A;  1W1J A;  2OAI A;  3D2H A;  2GQT A;  2VFR A;  3JS8 A;  3EUB 3;  2VFU A;  4PYT A;  3NRZ B;  1WVE A;  3FW9 A;  3NS1 B;  3W8X A;  3B9J B;  2PLI A;  4PZF A;  1JRP A;  1N60 C;  2Q85 A;  3AM9 A;  5HQX A;  3LAE A;  1N5W C;  3HRD C;  4HG0 A;  5AE3 A;  2E3T A;  1DZN A;  3DED A;  1ZXI C;  1W1S A;  2W54 A;  3S1C A;  2P13 A;  1AHZ A;  4EC3 A;  3VTE A;  2Q4W A;  2GQU A;  1ZR6 A;  1VAO A;  1FIQ B;  3FW8 A;  1RM6 B;  1V97 A;  2MBR A;  2QKN A;  3ETR B;  1E0Y A;  3FW7 A;  2VFT A;  1E8F A;  3W8Z A;  3PM9 A;  1W1O A;  2BVF A;  2EXR A;  3C0P A;  3DQ0 A;  5FXF A;  1N5X A;  1W1M A;  3AMZ A;  3W8W A;  2VFS A;  3KJM A;  4MLA A;  1W1L A;  3S1E A;  1N62 C;  3NVY B;  1T3Q C;  2PLS A;  4JB1 A;  2AXR A;  3SR6 B;  1W1K A;  2R2Z A;  1FFU C;  5FXE A;  4ML8 A;  5G5H B;  4BC7 A;  3FWA A;  4UD8 A;  1DII A;  3TSH A;  3NVW B;  5FXD A;  5G5G B;  3GSY A;  2W55 A;  2VAO A;  2BVG A;  3BW7 A;  1W1R A;  3LLB A;  1AHU A;  1DIQ A;  5AE1 A;  2RK5 A;  4OAL A;  4PWC A;  5D79 A;  1E8G A;  2R8D A;  3NVV B;  2BVH A;  1VDV A;  5HMR A;  4PVJ A;  1WVF A;  5HHZ A;  2I0K A;  4ZOH B;  3D2J A;  1MBT A;  4PVH A; 
#chains in the Genus database with same CATH topology
 1N63 C;  1UXY A;  3D2D A;  3I99 A;  2NQW A;  1N61 C;  1E8H A;  2UUU A;  2W3S A;  4PWB A;  1QLT A;  1WYG A;  2P3H A;  4JAY A;  3TX1 A;  3EJE B;  2Y3R A;  1HSK A;  1I19 A;  2Y3S A;  2P4P A;  1QLU A;  1SB3 B;  4BBY A;  1FFV C;  3S1F A;  3S1D A;  4BC9 A;  1F0X A;  3TSJ A;  4XLO A;  1JRO A;  5FXP A;  1FO4 A;  2VFV A;  4PVE A;  2YVS A;  3NVZ B;  2O3G A;  5K8E A;  5AE2 A;  3AN1 A;  4O95 A;  4DNS A;  1W1Q A;  4PVK A;  5L6G A;  3RJA A;  5ADZ A;  1MBB A;  2W3R A;  4BCA A;  2QPM A;  1AHV A;  1W1J A;  2OAI A;  3D2H A;  2GQT A;  2WDW A;  5L6F A;  5I1W A;  2VFR A;  3JS8 A;  3EUB 3;  2Y4G A;  2VFU A;  4PYT A;  3NRZ B;  1WVE A;  3FW9 A;  3NS1 B;  3W8X A;  3B9J B;  2PLI A;  4PZF A;  1JRP A;  1N60 C;  2Q85 A;  3AM9 A;  5HQX A;  3LAE A;  1N5W C;  3HRD C;  4HG0 A;  5AE3 A;  2IPI A;  2E3T A;  1DZN A;  2UUV A;  3DED A;  1ZXI C;  1W1S A;  2W54 A;  3S1C A;  2P13 A;  1AHZ A;  4EC3 A;  3VTE A;  2Q4W A;  2GQU A;  1ZR6 A;  1VAO A;  1FIQ B;  3FW8 A;  1RM6 B;  1V97 A;  2MBR A;  2QKN A;  3ETR B;  3RJ8 A;  1E0Y A;  3FW7 A;  5AWV A;  2VFT A;  1E8F A;  3POP A;  3W8Z A;  3PM9 A;  3HSU A;  1W1O A;  2BVF A;  2EXR A;  3C0P A;  3DQ0 A;  5FXF A;  1N5X A;  1W1M A;  3AMZ A;  3W8W A;  2VFS A;  3EJB B;  3KJM A;  4MLA A;  1W1L A;  3S1E A;  1N62 C;  3NVY B;  1T3Q C;  2PLS A;  4JB1 A;  2AXR A;  3SR6 B;  1W1K A;  2R2Z A;  1FFU C;  5FXE A;  4ML8 A;  5G5H B;  4BC7 A;  5I1V A;  3FWA A;  4UD8 A;  1DII A;  3TSH A;  3NVW B;  5FXD A;  5G5G B;  3GSY A;  2W55 A;  2VAO A;  2BVG A;  3BW7 A;  1W1R A;  3LLB A;  1AHU A;  1DIQ A;  5AE1 A;  2RK5 A;  4OAL A;  4PWC A;  5D79 A;  1E8G A;  3NVV B;  2R8D A;  2BVH A;  1VDV A;  3EJD B;  2Y08 A;  5HMR A;  4PVJ A;  1WVF A;  5HHZ A;  2I0K A;  4ZOH B;  3D2J A;  3PQB A;  1MBT A;  4PVH A; 
#chains in the Genus database with same CATH homology
 1N63 C;  1UXY A;  3D2D A;  3I99 A;  2NQW A;  1N61 C;  1E8H A;  2UUU A;  2W3S A;  4PWB A;  1QLT A;  1WYG A;  2P3H A;  4JAY A;  3TX1 A;  2Y3R A;  1HSK A;  1I19 A;  2Y3S A;  2P4P A;  1QLU A;  1SB3 B;  4BBY A;  1FFV C;  3S1F A;  3S1D A;  4BC9 A;  1F0X A;  3TSJ A;  4XLO A;  1JRO A;  5FXP A;  1FO4 A;  2VFV A;  4PVE A;  2YVS A;  3NVZ B;  2O3G A;  5K8E A;  5AE2 A;  3AN1 A;  4O95 A;  4DNS A;  1W1Q A;  4PVK A;  5L6G A;  3RJA A;  5ADZ A;  1MBB A;  2W3R A;  4BCA A;  2QPM A;  1AHV A;  1W1J A;  2OAI A;  3D2H A;  2GQT A;  2WDW A;  5L6F A;  5I1W A;  2VFR A;  3JS8 A;  3EUB 3;  2Y4G A;  2VFU A;  4PYT A;  3NRZ B;  1WVE A;  3FW9 A;  3NS1 B;  3W8X A;  3B9J B;  2PLI A;  4PZF A;  1JRP A;  1N60 C;  2Q85 A;  3AM9 A;  5HQX A;  3LAE A;  1N5W C;  3HRD C;  4HG0 A;  5AE3 A;  2IPI A;  2E3T A;  1DZN A;  2UUV A;  3DED A;  1ZXI C;  1W1S A;  2W54 A;  3S1C A;  2P13 A;  1AHZ A;  4EC3 A;  3VTE A;  2Q4W A;  2GQU A;  1ZR6 A;  1VAO A;  1FIQ B;  3FW8 A;  1RM6 B;  1V97 A;  2MBR A;  2QKN A;  3ETR B;  3RJ8 A;  1E0Y A;  3FW7 A;  5AWV A;  2VFT A;  1E8F A;  3POP A;  3W8Z A;  3PM9 A;  3HSU A;  1W1O A;  2BVF A;  2EXR A;  3C0P A;  3DQ0 A;  5FXF A;  1N5X A;  1W1M A;  3AMZ A;  3W8W A;  2VFS A;  3KJM A;  4MLA A;  1W1L A;  3S1E A;  1N62 C;  3NVY B;  1T3Q C;  2PLS A;  4JB1 A;  2AXR A;  3SR6 B;  1W1K A;  2R2Z A;  1FFU C;  5FXE A;  4ML8 A;  5G5H B;  4BC7 A;  5I1V A;  3FWA A;  4UD8 A;  1DII A;  3TSH A;  3NVW B;  5FXD A;  5G5G B;  3GSY A;  2W55 A;  2VAO A;  2BVG A;  3BW7 A;  1W1R A;  3LLB A;  1AHU A;  1DIQ A;  5AE1 A;  2RK5 A;  4OAL A;  4PWC A;  5D79 A;  1E8G A;  2R8D A;  3NVV B;  2BVH A;  1VDV A;  2Y08 A;  5HMR A;  4PVJ A;  1WVF A;  5HHZ A;  2I0K A;  4ZOH B;  3D2J A;  3PQB A;  1MBT A;  4PVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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