1W1RA

Plant cytokinin dehydrogenase in complex with trans-zeatin
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords CYTOKININ DEHYDROGENASE 1
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
total genus 167
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1rA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1rA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1rA03
1AHZA 4UD8A 4PVEA 1WYGA 2W3RA 3D2DA 3SR6B 2MBRA 3EUB3 5ADZA 1FO4A 2NQWA 1ZR6A 5AE1A 3W8XA 1SB3B 2R8DA 1N62C 1N63C 1JRPA 3C0PA 5HHZA 2QPMA 2BVHA 3AM9A 3LAEA 1W1MA 1W1RA 3GSYA 1MBBA 4EC3A 1F0XA 2BVFA 2Q4WA 4JAYA 2GQUA 1E8GA 1QLTA 1N5XA 1QLUA 3NVZB 3W8ZA 5FXPA 1RM6B 1E0YA 1W1QA 2VFVA 5G5HB 3JS8A 4PYTA 1ZXIC 2EXRA 4OALA 1VAOA 1DZNA 1V97A 3AMZA 3HRDC 3VTEA 4O95A 2W54A 1UXYA 5AE2A 3FWAA 2VFTA 4PWBA 3I99A 3S1EA 4MLAA 4PVKA 2E3TA 3FW7A 5HQXA 3D2HA 2P4PA 2W55A 2W3SA 5D79A 2Q85A 4BCAA 1JROA 1FFVC 3PM9A 1N60C 3FW8A 1MBTA 1HSKA 4PWCA 4BC9A 3BW7A 3NVWB 3ETRB 4PVHA 3AN1A 5FXFA 3NRZB 3W8WA 1E8FA 4BBYA 2AXRA 2PLIA 1W1JA 2QKNA 5G5GB 2O3GA 3TX1A 1T3QC 1E8HA 3NVVB 4PVJA 4PZFA 3S1CA 1WVEA 5FXDA 2YVSA 1FFUC 1VDVA 3D2JA 1AHVA 1FIQB 1W1KA 2OAIA 1W1LA 4XLOA 4JB1A 3S1DA 4ML8A 4DNSA 3NVYB 4BC7A 2P3HA 2VFRA 2P13A 3DEDA 3DQ0A 1N61C 2BVGA 3FW9A 2R2ZA 1DIQA 2PLSA 1DIIA 3NS1B 2VAOA 2RK5A 4ZOHB 4HG0A 1AHUA 3B9JB 2I0KA 2GQTA 5FXEA 5AE3A 1WVFA 1I19A 3LLBA 3S1FA 5HMRA 1W1SA 1W1OA 3TSHA 2VFUA 2VFSA 3KJMA 3TSJA 1N5WC
chains in the Genus database with same CATH superfamily
1AHZA 4UD8A 4PVEA 1WYGA 2W3RA 3D2DA 3SR6B 2MBRA 3EUB3 5ADZA 1FO4A 2NQWA 1ZR6A 5AE1A 3W8XA 1SB3B 2R8DA 1N62C 1N63C 1JRPA 3C0PA 5HHZA 2QPMA 2BVHA 3AM9A 2WDWA 3LAEA 1W1MA 1W1RA 3GSYA 1MBBA 3EJDB 4EC3A 1F0XA 2BVFA 2Q4WA 2UUVA 4JAYA 2GQUA 1E8GA 1QLTA 1N5XA 1QLUA 3NVZB 3W8ZA 5FXPA 1RM6B 1E0YA 1W1QA 2VFVA 5G5HB 3JS8A 4PYTA 1ZXIC 2EXRA 4OALA 1VAOA 1DZNA 1V97A 3AMZA 3HRDC 3VTEA 5L6FA 4O95A 2UUUA 2W54A 1UXYA 3POPA 5AE2A 3FWAA 2VFTA 4PWBA 3I99A 3S1EA 4MLAA 4PVKA 2E3TA 3FW7A 5HQXA 3D2HA 2P4PA 2W55A 2W3SA 5D79A 3RJ8A 2Q85A 2Y3SA 4BCAA 1JROA 1FFVC 3PM9A 1N60C 3FW8A 1MBTA 1HSKA 4PWCA 4BC9A 3BW7A 3NVWB 3ETRB 4PVHA 3AN1A 5FXFA 3NRZB 3RJAA 3W8WA 1E8FA 4BBYA 2AXRA 2PLIA 1W1JA 2QKNA 5G5GB 2O3GA 3TX1A 1T3QC 5K8EA 1E8HA 3NVVB 4PVJA 4PZFA 3S1CA 1WVEA 5FXDA 2Y3RA 2YVSA 1FFUC 1VDVA 3D2JA 1AHVA 1FIQB 1W1KA 2OAIA 3PQBA 5L6GA 1W1LA 3NVYB 4JB1A 4XLOA 4ML8A 3S1DA 4DNSA 4BC7A 2Y08A 2Y4GA 2P3HA 2VFRA 2P13A 3DEDA 3DQ0A 1N61C 5I1VA 2BVGA 3FW9A 2R2ZA 1DIQA 2PLSA 1DIIA 3NS1B 5I1WA 3EJBB 2VAOA 2RK5A 4ZOHB 3HSUA 4HG0A 1AHUA 3B9JB 2I0KA 2GQTA 3EJEB 5FXEA 5AE3A 5AWVA 1WVFA 1I19A 3LLBA 3S1FA 5HMRA 2IPIA 1W1SA 1W1OA 3TSHA 2VFUA 2VFSA 3KJMA 3TSJA 1N5WC
chains in the Genus database with same CATH topology
1AHZA 4UD8A 4PVEA 1WYGA 2W3RA 3D2DA 3SR6B 2MBRA 3EUB3 5ADZA 1FO4A 2NQWA 1ZR6A 5AE1A 3W8XA 1SB3B 2R8DA 1N62C 1N63C 1JRPA 3C0PA 5HHZA 2QPMA 2BVHA 3AM9A 2WDWA 3LAEA 1W1MA 1W1RA 3GSYA 1MBBA 4EC3A 1F0XA 2BVFA 2Q4WA 2UUVA 4JAYA 2GQUA 1E8GA 1QLTA 1N5XA 1QLUA 3NVZB 3W8ZA 5FXPA 1RM6B 1E0YA 1W1QA 2VFVA 5G5HB 3JS8A 4PYTA 1ZXIC 2EXRA 4OALA 1VAOA 1DZNA 1V97A 3AMZA 3HRDC 3VTEA 5L6FA 4O95A 2UUUA 2W54A 1UXYA 3POPA 5AE2A 3FWAA 2VFTA 4PWBA 3I99A 3S1EA 4MLAA 4PVKA 2E3TA 3FW7A 5HQXA 3D2HA 2P4PA 2W55A 2W3SA 5D79A 3RJ8A 2Q85A 2Y3SA 4BCAA 1JROA 1FFVC 3PM9A 1N60C 3FW8A 1MBTA 1HSKA 4PWCA 4BC9A 3BW7A 3NVWB 3ETRB 4PVHA 3AN1A 5FXFA 3NRZB 3RJAA 3W8WA 1E8FA 4BBYA 2AXRA 2PLIA 1W1JA 2QKNA 5G5GB 2O3GA 3TX1A 1T3QC 5K8EA 1E8HA 3NVVB 4PVJA 4PZFA 3S1CA 1WVEA 5FXDA 2Y3RA 2YVSA 1FFUC 1VDVA 3D2JA 1AHVA 1FIQB 1W1KA 2OAIA 3PQBA 5L6GA 1W1LA 4XLOA 4JB1A 3S1DA 4ML8A 4DNSA 3NVYB 4BC7A 2Y08A 2Y4GA 2P3HA 2VFRA 2P13A 3DEDA 3DQ0A 1N61C 5I1VA 2BVGA 3FW9A 2R2ZA 1DIQA 2PLSA 1DIIA 3NS1B 5I1WA 2VAOA 2RK5A 4ZOHB 3HSUA 4HG0A 1AHUA 3B9JB 2I0KA 2GQTA 5FXEA 5AE3A 5AWVA 1WVFA 1I19A 3LLBA 3S1FA 5HMRA 2IPIA 1W1SA 1W1OA 3TSHA 2VFUA 2VFSA 3KJMA 3TSJA 1N5WC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHZ A;  4UD8 A;  4PVE A;  1WYG A;  2W3R A;  3D2D A;  3SR6 B;  2MBR A;  3EUB 3;  5ADZ A;  1FO4 A;  2NQW A;  1ZR6 A;  5AE1 A;  3W8X A;  1SB3 B;  2R8D A;  1N62 C;  1N63 C;  1JRP A;  3C0P A;  5HHZ A;  2QPM A;  2BVH A;  3AM9 A;  3LAE A;  1W1M A;  1W1R A;  3GSY A;  1MBB A;  4EC3 A;  1F0X A;  2BVF A;  2Q4W A;  4JAY A;  2GQU A;  1E8G A;  1QLT A;  1N5X A;  1QLU A;  3NVZ B;  3W8Z A;  5FXP A;  1RM6 B;  1E0Y A;  1W1Q A;  2VFV A;  5G5H B;  3JS8 A;  4PYT A;  1ZXI C;  2EXR A;  4OAL A;  1VAO A;  1DZN A;  1V97 A;  3AMZ A;  3HRD C;  3VTE A;  4O95 A;  2W54 A;  1UXY A;  5AE2 A;  3FWA A;  2VFT A;  4PWB A;  3I99 A;  3S1E A;  4MLA A;  4PVK A;  2E3T A;  3FW7 A;  5HQX A;  3D2H A;  2P4P A;  2W55 A;  2W3S A;  5D79 A;  2Q85 A;  4BCA A;  1JRO A;  1FFV C;  3PM9 A;  1N60 C;  3FW8 A;  1MBT A;  1HSK A;  4PWC A;  4BC9 A;  3BW7 A;  3NVW B;  3ETR B;  4PVH A;  3AN1 A;  5FXF A;  3NRZ B;  3W8W A;  1E8F A;  4BBY A;  2AXR A;  2PLI A;  1W1J A;  2QKN A;  5G5G B;  2O3G A;  3TX1 A;  1T3Q C;  1E8H A;  3NVV B;  4PVJ A;  4PZF A;  3S1C A;  1WVE A;  5FXD A;  2YVS A;  1FFU C;  1VDV A;  3D2J A;  1AHV A;  1FIQ B;  1W1K A;  2OAI A;  1W1L A;  4XLO A;  4JB1 A;  3S1D A;  4ML8 A;  4DNS A;  3NVY B;  4BC7 A;  2P3H A;  2VFR A;  2P13 A;  3DED A;  3DQ0 A;  1N61 C;  2BVG A;  3FW9 A;  2R2Z A;  1DIQ A;  2PLS A;  1DII A;  3NS1 B;  2VAO A;  2RK5 A;  4ZOH B;  4HG0 A;  1AHU A;  3B9J B;  2I0K A;  2GQT A;  5FXE A;  5AE3 A;  1WVF A;  1I19 A;  3LLB A;  3S1F A;  5HMR A;  1W1S A;  1W1O A;  3TSH A;  2VFU A;  2VFS A;  3KJM A;  3TSJ A;  1N5W C; 
#chains in the Genus database with same CATH topology
 1AHZ A;  4UD8 A;  4PVE A;  1WYG A;  2W3R A;  3D2D A;  3SR6 B;  2MBR A;  3EUB 3;  5ADZ A;  1FO4 A;  2NQW A;  1ZR6 A;  5AE1 A;  3W8X A;  1SB3 B;  2R8D A;  1N62 C;  1N63 C;  1JRP A;  3C0P A;  5HHZ A;  2QPM A;  2BVH A;  3AM9 A;  2WDW A;  3LAE A;  1W1M A;  1W1R A;  3GSY A;  1MBB A;  3EJD B;  4EC3 A;  1F0X A;  2BVF A;  2Q4W A;  2UUV A;  4JAY A;  2GQU A;  1E8G A;  1QLT A;  1N5X A;  1QLU A;  3NVZ B;  3W8Z A;  5FXP A;  1RM6 B;  1E0Y A;  1W1Q A;  2VFV A;  5G5H B;  3JS8 A;  4PYT A;  1ZXI C;  2EXR A;  4OAL A;  1VAO A;  1DZN A;  1V97 A;  3AMZ A;  3HRD C;  3VTE A;  5L6F A;  4O95 A;  2UUU A;  2W54 A;  1UXY A;  3POP A;  5AE2 A;  3FWA A;  2VFT A;  4PWB A;  3I99 A;  3S1E A;  4MLA A;  4PVK A;  2E3T A;  3FW7 A;  5HQX A;  3D2H A;  2P4P A;  2W55 A;  2W3S A;  5D79 A;  3RJ8 A;  2Q85 A;  2Y3S A;  4BCA A;  1JRO A;  1FFV C;  3PM9 A;  1N60 C;  3FW8 A;  1MBT A;  1HSK A;  4PWC A;  4BC9 A;  3BW7 A;  3NVW B;  3ETR B;  4PVH A;  3AN1 A;  5FXF A;  3NRZ B;  3RJA A;  3W8W A;  1E8F A;  4BBY A;  2AXR A;  2PLI A;  1W1J A;  2QKN A;  5G5G B;  2O3G A;  3TX1 A;  1T3Q C;  5K8E A;  1E8H A;  3NVV B;  4PVJ A;  4PZF A;  3S1C A;  1WVE A;  5FXD A;  2Y3R A;  2YVS A;  1FFU C;  1VDV A;  3D2J A;  1AHV A;  1FIQ B;  1W1K A;  2OAI A;  3PQB A;  5L6G A;  1W1L A;  3NVY B;  4JB1 A;  4XLO A;  4ML8 A;  3S1D A;  4DNS A;  4BC7 A;  2Y08 A;  2Y4G A;  2P3H A;  2VFR A;  2P13 A;  3DED A;  3DQ0 A;  1N61 C;  5I1V A;  2BVG A;  3FW9 A;  2R2Z A;  1DIQ A;  2PLS A;  1DII A;  3NS1 B;  5I1W A;  3EJB B;  2VAO A;  2RK5 A;  4ZOH B;  3HSU A;  4HG0 A;  1AHU A;  3B9J B;  2I0K A;  2GQT A;  3EJE B;  5FXE A;  5AE3 A;  5AWV A;  1WVF A;  1I19 A;  3LLB A;  3S1F A;  5HMR A;  2IPI A;  1W1S A;  1W1O A;  3TSH A;  2VFU A;  2VFS A;  3KJM A;  3TSJ A;  1N5W C; 
#chains in the Genus database with same CATH homology
 1AHZ A;  4UD8 A;  4PVE A;  1WYG A;  2W3R A;  3D2D A;  3SR6 B;  2MBR A;  3EUB 3;  5ADZ A;  1FO4 A;  2NQW A;  1ZR6 A;  5AE1 A;  3W8X A;  1SB3 B;  2R8D A;  1N62 C;  1N63 C;  1JRP A;  3C0P A;  5HHZ A;  2QPM A;  2BVH A;  3AM9 A;  2WDW A;  3LAE A;  1W1M A;  1W1R A;  3GSY A;  1MBB A;  4EC3 A;  1F0X A;  2BVF A;  2Q4W A;  2UUV A;  4JAY A;  2GQU A;  1E8G A;  1QLT A;  1N5X A;  1QLU A;  3NVZ B;  3W8Z A;  5FXP A;  1RM6 B;  1E0Y A;  1W1Q A;  2VFV A;  5G5H B;  3JS8 A;  4PYT A;  1ZXI C;  2EXR A;  4OAL A;  1VAO A;  1DZN A;  1V97 A;  3AMZ A;  3HRD C;  3VTE A;  5L6F A;  4O95 A;  2UUU A;  2W54 A;  1UXY A;  3POP A;  5AE2 A;  3FWA A;  2VFT A;  4PWB A;  3I99 A;  3S1E A;  4MLA A;  4PVK A;  2E3T A;  3FW7 A;  5HQX A;  3D2H A;  2P4P A;  2W55 A;  2W3S A;  5D79 A;  3RJ8 A;  2Q85 A;  2Y3S A;  4BCA A;  1JRO A;  1FFV C;  3PM9 A;  1N60 C;  3FW8 A;  1MBT A;  1HSK A;  4PWC A;  4BC9 A;  3BW7 A;  3NVW B;  3ETR B;  4PVH A;  3AN1 A;  5FXF A;  3NRZ B;  3RJA A;  3W8W A;  1E8F A;  4BBY A;  2AXR A;  2PLI A;  1W1J A;  2QKN A;  5G5G B;  2O3G A;  3TX1 A;  1T3Q C;  5K8E A;  1E8H A;  3NVV B;  4PVJ A;  4PZF A;  3S1C A;  1WVE A;  5FXD A;  2Y3R A;  2YVS A;  1FFU C;  1VDV A;  3D2J A;  1AHV A;  1FIQ B;  1W1K A;  2OAI A;  3PQB A;  5L6G A;  1W1L A;  4XLO A;  4JB1 A;  3S1D A;  4ML8 A;  4DNS A;  3NVY B;  4BC7 A;  2Y08 A;  2Y4G A;  2P3H A;  2VFR A;  2P13 A;  3DED A;  3DQ0 A;  1N61 C;  5I1V A;  2BVG A;  3FW9 A;  2R2Z A;  1DIQ A;  2PLS A;  1DII A;  3NS1 B;  5I1W A;  2VAO A;  2RK5 A;  4ZOH B;  3HSU A;  4HG0 A;  1AHU A;  3B9J B;  2I0K A;  2GQT A;  5FXE A;  5AE3 A;  5AWV A;  1WVF A;  1I19 A;  3LLB A;  3S1F A;  5HMR A;  2IPI A;  1W1S A;  1W1O A;  3TSH A;  2VFU A;  2VFS A;  3KJM A;  3TSJ A;  1N5W C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...