4PVJA

Phl p 4 i153v variant, a glucose oxidase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Phleum pratense
molecule keywords Pollen allergen Phl p 4.0202
total genus 160
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pvjA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pvjA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pvjA03
4ZOHB 3KJMA 3AN1A 3RJ8A 3RJAA 3W8XA 3B9JB 1UXYA 5K8EA 2Q85A 4JAYA 4PVEA 2W3SA 1W1JA 1WVFA 2Y4GA 2QPMA 3S1DA 1MBTA 3TSHA 3C0PA 3DQ0A 1N63C 4DNSA 4EC3A 5AWVA 3EUB3 1MBBA 5AE3A 2VFVA 4BBYA 2Y08A 1VAOA 5AE1A 2EXRA 2VFSA 3TX1A 2I0KA 3GSYA 4ML8A 5FXDA 2VFTA 2Y3SA 1FIQB 1N60C 3BW7A 5HHZA 4PZFA 5FXFA 2MBRA 2BVFA 4OALA 3VTEA 2GQUA 1AHUA 2BVHA 5I1VA 3S1CA 1DZNA 1WYGA 1E8GA 1E8HA 1W1MA 1E8FA 2Q4WA 1WVEA 4PVHA 4BC9A 1DIIA 1N5WC 3S1FA 3AM9A 3ETRB 1ZXIC 4PWBA 4PVJA 2W3RA 2WDWA 5L6FA 5I1WA 3I99A 1FFVC 1V97A 3S1EA 5HMRA 3PQBA 1DIQA 3D2HA 1FO4A 4PYTA 5FXEA 4UD8A 1FFUC 2BVGA 1QLTA 4PWCA 2GQTA 2W55A 2AXRA 3FW9A 1W1OA 1AHZA 3D2JA 3NVZB 5FXPA 5AE2A 2QKNA 2Y3RA 1I19A 1E0YA 1HSKA 3HSUA 2VFRA 3PM9A 1N61C 4JB1A 3D2DA 2W54A 3JS8A 1W1LA 3POPA 3AMZA 5D79A 1ZR6A 3TSJA 3SR6B 3FWAA 1W1QA 1N5XA 1F0XA 3FW8A 2E3TA 4BCAA 4BC7A 1JROA 1N62C 2VAOA 2VFUA 3NRZB 3NS1B 5ADZA 4O95A 4XLOA 2IPIA 1VDVA 4MLAA 1W1RA 1AHVA 1T3QC 1W1SA 5L6GA 1W1KA 3FW7A 5HQXA 4PVKA 3W8WA 3W8ZA 1QLUA
chains in the Genus database with same CATH superfamily
4ZOHB 3KJMA 3AN1A 3RJ8A 2NQWA 3RJAA 3W8XA 3B9JB 1UXYA 5K8EA 2Q85A 4JAYA 2UUUA 4PVEA 2W3SA 1W1JA 1WVFA 2PLSA 2Y4GA 2QPMA 3S1DA 1MBTA 3TSHA 2OAIA 3C0PA 3DQ0A 1N63C 4DNSA 4EC3A 5AWVA 3EUB3 4HG0A 1MBBA 5AE3A 2VFVA 3NVVB 4BBYA 2Y08A 1VAOA 5G5GB 5AE1A 2EXRA 2VFSA 3TX1A 2I0KA 3GSYA 4ML8A 2O3GA 5FXDA 2VFTA 2PLIA 2Y3SA 1FIQB 1N60C 3BW7A 5HHZA 4PZFA 5FXFA 2MBRA 2BVFA 2P4PA 4OALA 3VTEA 2GQUA 1AHUA 2BVHA 5I1VA 3S1CA 1DZNA 1WYGA 1E8GA 1E8HA 1W1MA 1E8FA 2Q4WA 3EJEB 1WVEA 4PVHA 2R8DA 4BC9A 1DIIA 1N5WC 3S1FA 3AM9A 3ETRB 1ZXIC 4PWBA 4PVJA 2W3RA 2WDWA 5L6FA 5I1WA 3LAEA 3I99A 1FFVC 1JRPA 1V97A 3S1EA 5HMRA 3PQBA 2P3HA 1DIQA 3D2HA 1FO4A 4PYTA 2RK5A 5FXEA 4UD8A 1FFUC 2BVGA 1QLTA 4PWCA 2GQTA 2W55A 2AXRA 3FW9A 1W1OA 1AHZA 3D2JA 3NVZB 5FXPA 5AE2A 3LLBA 2QKNA 2Y3RA 1I19A 3DEDA 2R2ZA 1E0YA 1HSKA 3HSUA 2VFRA 3NVYB 3PM9A 1N61C 4JB1A 3D2DA 2W54A 3JS8A 1W1LA 3POPA 3AMZA 5D79A 1ZR6A 3TSJA 3SR6B 1RM6B 1SB3B 3FWAA 1W1QA 1N5XA 5G5HB 2UUVA 1F0XA 3FW8A 2E3TA 4BCAA 4BC7A 1JROA 3NVWB 3HRDC 1N62C 2VAOA 2VFUA 3NRZB 3EJBB 3NS1B 5ADZA 4O95A 4XLOA 2IPIA 1VDVA 4MLAA 1W1RA 1AHVA 1T3QC 3EJDB 1W1SA 2P13A 2YVSA 5L6GA 1W1KA 3FW7A 5HQXA 4PVKA 3W8WA 3W8ZA 1QLUA
chains in the Genus database with same CATH topology
4ZOHB 3KJMA 3AN1A 3RJ8A 2NQWA 3RJAA 3W8XA 3B9JB 1UXYA 5K8EA 2Q85A 4JAYA 2UUUA 4PVEA 2W3SA 1W1JA 1WVFA 2PLSA 2Y4GA 2QPMA 3S1DA 1MBTA 3TSHA 2OAIA 3C0PA 3DQ0A 1N63C 4DNSA 4EC3A 5AWVA 3EUB3 4HG0A 1MBBA 5AE3A 2VFVA 3NVVB 4BBYA 2Y08A 1VAOA 5G5GB 5AE1A 2EXRA 2VFSA 3TX1A 2I0KA 3GSYA 4ML8A 2O3GA 5FXDA 2VFTA 2PLIA 2Y3SA 1FIQB 1N60C 3BW7A 5HHZA 4PZFA 5FXFA 2MBRA 2BVFA 2P4PA 4OALA 3VTEA 2GQUA 1AHUA 2BVHA 5I1VA 3S1CA 1DZNA 1WYGA 1E8GA 1E8HA 1W1MA 1E8FA 2Q4WA 1WVEA 4PVHA 2R8DA 4BC9A 1DIIA 1N5WC 3S1FA 3AM9A 3ETRB 1ZXIC 4PWBA 4PVJA 2W3RA 2WDWA 5L6FA 5I1WA 3LAEA 3I99A 1FFVC 1JRPA 1V97A 3S1EA 5HMRA 3PQBA 2P3HA 1DIQA 3D2HA 1FO4A 4PYTA 2RK5A 5FXEA 4UD8A 1FFUC 2BVGA 1QLTA 4PWCA 2GQTA 2W55A 2AXRA 3FW9A 1W1OA 1AHZA 3D2JA 3NVZB 5FXPA 5AE2A 3LLBA 2QKNA 2Y3RA 1I19A 3DEDA 2R2ZA 1E0YA 1HSKA 3HSUA 2VFRA 3NVYB 3PM9A 1N61C 4JB1A 3D2DA 2W54A 3JS8A 1W1LA 3POPA 3AMZA 5D79A 1ZR6A 3TSJA 3SR6B 1RM6B 1SB3B 3FWAA 1W1QA 1N5XA 5G5HB 2UUVA 1F0XA 3FW8A 2E3TA 4BCAA 4BC7A 1JROA 3NVWB 3HRDC 1N62C 2VAOA 2VFUA 3NRZB 3NS1B 5ADZA 4O95A 4XLOA 2IPIA 1VDVA 4MLAA 1W1RA 1AHVA 1T3QC 1W1SA 2P13A 2YVSA 5L6GA 1W1KA 3FW7A 5HQXA 4PVKA 3W8WA 3W8ZA 1QLUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZOH B;  3KJM A;  3AN1 A;  3RJ8 A;  3RJA A;  3W8X A;  3B9J B;  1UXY A;  5K8E A;  2Q85 A;  4JAY A;  4PVE A;  2W3S A;  1W1J A;  1WVF A;  2Y4G A;  2QPM A;  3S1D A;  1MBT A;  3TSH A;  3C0P A;  3DQ0 A;  1N63 C;  4DNS A;  4EC3 A;  5AWV A;  3EUB 3;  1MBB A;  5AE3 A;  2VFV A;  4BBY A;  2Y08 A;  1VAO A;  5AE1 A;  2EXR A;  2VFS A;  3TX1 A;  2I0K A;  3GSY A;  4ML8 A;  5FXD A;  2VFT A;  2Y3S A;  1FIQ B;  1N60 C;  3BW7 A;  5HHZ A;  4PZF A;  5FXF A;  2MBR A;  2BVF A;  4OAL A;  3VTE A;  2GQU A;  1AHU A;  2BVH A;  5I1V A;  3S1C A;  1DZN A;  1WYG A;  1E8G A;  1E8H A;  1W1M A;  1E8F A;  2Q4W A;  1WVE A;  4PVH A;  4BC9 A;  1DII A;  1N5W C;  3S1F A;  3AM9 A;  3ETR B;  1ZXI C;  4PWB A;  4PVJ A;  2W3R A;  2WDW A;  5L6F A;  5I1W A;  3I99 A;  1FFV C;  1V97 A;  3S1E A;  5HMR A;  3PQB A;  1DIQ A;  3D2H A;  1FO4 A;  4PYT A;  5FXE A;  4UD8 A;  1FFU C;  2BVG A;  1QLT A;  4PWC A;  2GQT A;  2W55 A;  2AXR A;  3FW9 A;  1W1O A;  1AHZ A;  3D2J A;  3NVZ B;  5FXP A;  5AE2 A;  2QKN A;  2Y3R A;  1I19 A;  1E0Y A;  1HSK A;  3HSU A;  2VFR A;  3PM9 A;  1N61 C;  4JB1 A;  3D2D A;  2W54 A;  3JS8 A;  1W1L A;  3POP A;  3AMZ A;  5D79 A;  1ZR6 A;  3TSJ A;  3SR6 B;  3FWA A;  1W1Q A;  1N5X A;  1F0X A;  3FW8 A;  2E3T A;  4BCA A;  4BC7 A;  1JRO A;  1N62 C;  2VAO A;  2VFU A;  3NRZ B;  3NS1 B;  5ADZ A;  4O95 A;  4XLO A;  2IPI A;  1VDV A;  4MLA A;  1W1R A;  1AHV A;  1T3Q C;  1W1S A;  5L6G A;  1W1K A;  3FW7 A;  5HQX A;  4PVK A;  3W8W A;  3W8Z A;  1QLU A; 
#chains in the Genus database with same CATH topology
 4ZOH B;  3KJM A;  3AN1 A;  3RJ8 A;  2NQW A;  3RJA A;  3W8X A;  3B9J B;  1UXY A;  5K8E A;  2Q85 A;  4JAY A;  2UUU A;  4PVE A;  2W3S A;  1W1J A;  1WVF A;  2PLS A;  2Y4G A;  2QPM A;  3S1D A;  1MBT A;  3TSH A;  2OAI A;  3C0P A;  3DQ0 A;  1N63 C;  4DNS A;  4EC3 A;  5AWV A;  3EUB 3;  4HG0 A;  1MBB A;  5AE3 A;  2VFV A;  3NVV B;  4BBY A;  2Y08 A;  1VAO A;  5G5G B;  5AE1 A;  2EXR A;  2VFS A;  3TX1 A;  2I0K A;  3GSY A;  4ML8 A;  2O3G A;  5FXD A;  2VFT A;  2PLI A;  2Y3S A;  1FIQ B;  1N60 C;  3BW7 A;  5HHZ A;  4PZF A;  5FXF A;  2MBR A;  2BVF A;  2P4P A;  4OAL A;  3VTE A;  2GQU A;  1AHU A;  2BVH A;  5I1V A;  3S1C A;  1DZN A;  1WYG A;  1E8G A;  1E8H A;  1W1M A;  1E8F A;  2Q4W A;  3EJE B;  1WVE A;  4PVH A;  2R8D A;  4BC9 A;  1DII A;  1N5W C;  3S1F A;  3AM9 A;  3ETR B;  1ZXI C;  4PWB A;  4PVJ A;  2W3R A;  2WDW A;  5L6F A;  5I1W A;  3LAE A;  3I99 A;  1FFV C;  1JRP A;  1V97 A;  3S1E A;  5HMR A;  3PQB A;  2P3H A;  1DIQ A;  3D2H A;  1FO4 A;  4PYT A;  2RK5 A;  5FXE A;  4UD8 A;  1FFU C;  2BVG A;  1QLT A;  4PWC A;  2GQT A;  2W55 A;  2AXR A;  3FW9 A;  1W1O A;  1AHZ A;  3D2J A;  3NVZ B;  5FXP A;  5AE2 A;  3LLB A;  2QKN A;  2Y3R A;  1I19 A;  3DED A;  2R2Z A;  1E0Y A;  1HSK A;  3HSU A;  2VFR A;  3NVY B;  3PM9 A;  1N61 C;  4JB1 A;  3D2D A;  2W54 A;  3JS8 A;  1W1L A;  3POP A;  3AMZ A;  5D79 A;  1ZR6 A;  3TSJ A;  3SR6 B;  1RM6 B;  1SB3 B;  3FWA A;  1W1Q A;  1N5X A;  5G5H B;  2UUV A;  1F0X A;  3FW8 A;  2E3T A;  4BCA A;  4BC7 A;  1JRO A;  3NVW B;  3HRD C;  1N62 C;  2VAO A;  2VFU A;  3NRZ B;  3EJB B;  3NS1 B;  5ADZ A;  4O95 A;  4XLO A;  2IPI A;  1VDV A;  4MLA A;  1W1R A;  1AHV A;  1T3Q C;  3EJD B;  1W1S A;  2P13 A;  2YVS A;  5L6G A;  1W1K A;  3FW7 A;  5HQX A;  4PVK A;  3W8W A;  3W8Z A;  1QLU A; 
#chains in the Genus database with same CATH homology
 4ZOH B;  3KJM A;  3AN1 A;  3RJ8 A;  2NQW A;  3RJA A;  3W8X A;  3B9J B;  1UXY A;  5K8E A;  2Q85 A;  4JAY A;  2UUU A;  4PVE A;  2W3S A;  1W1J A;  1WVF A;  2PLS A;  2Y4G A;  2QPM A;  3S1D A;  1MBT A;  3TSH A;  2OAI A;  3C0P A;  3DQ0 A;  1N63 C;  4DNS A;  4EC3 A;  5AWV A;  3EUB 3;  4HG0 A;  1MBB A;  5AE3 A;  2VFV A;  3NVV B;  4BBY A;  2Y08 A;  1VAO A;  5G5G B;  5AE1 A;  2EXR A;  2VFS A;  3TX1 A;  2I0K A;  3GSY A;  4ML8 A;  2O3G A;  5FXD A;  2VFT A;  2PLI A;  2Y3S A;  1FIQ B;  1N60 C;  3BW7 A;  5HHZ A;  4PZF A;  5FXF A;  2MBR A;  2BVF A;  2P4P A;  4OAL A;  3VTE A;  2GQU A;  1AHU A;  2BVH A;  5I1V A;  3S1C A;  1DZN A;  1WYG A;  1E8G A;  1E8H A;  1W1M A;  1E8F A;  2Q4W A;  1WVE A;  4PVH A;  2R8D A;  4BC9 A;  1DII A;  1N5W C;  3S1F A;  3AM9 A;  3ETR B;  1ZXI C;  4PWB A;  4PVJ A;  2W3R A;  2WDW A;  5L6F A;  5I1W A;  3LAE A;  3I99 A;  1FFV C;  1JRP A;  1V97 A;  3S1E A;  5HMR A;  3PQB A;  2P3H A;  1DIQ A;  3D2H A;  1FO4 A;  4PYT A;  2RK5 A;  5FXE A;  4UD8 A;  1FFU C;  2BVG A;  1QLT A;  4PWC A;  2GQT A;  2W55 A;  2AXR A;  3FW9 A;  1W1O A;  1AHZ A;  3D2J A;  3NVZ B;  5FXP A;  5AE2 A;  3LLB A;  2QKN A;  2Y3R A;  1I19 A;  3DED A;  2R2Z A;  1E0Y A;  1HSK A;  3HSU A;  2VFR A;  3NVY B;  3PM9 A;  1N61 C;  4JB1 A;  3D2D A;  2W54 A;  3JS8 A;  1W1L A;  3POP A;  3AMZ A;  5D79 A;  1ZR6 A;  3TSJ A;  3SR6 B;  1RM6 B;  1SB3 B;  3FWA A;  1W1Q A;  1N5X A;  5G5H B;  2UUV A;  1F0X A;  3FW8 A;  2E3T A;  4BCA A;  4BC7 A;  1JRO A;  3NVW B;  3HRD C;  1N62 C;  2VAO A;  2VFU A;  3NRZ B;  3NS1 B;  5ADZ A;  4O95 A;  4XLO A;  2IPI A;  1VDV A;  4MLA A;  1W1R A;  1AHV A;  1T3Q C;  1W1S A;  2P13 A;  2YVS A;  5L6G A;  1W1K A;  3FW7 A;  5HQX A;  4PVK A;  3W8W A;  3W8Z A;  1QLU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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