4PVJA

Phl p 4 i153v variant, a glucose oxidase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Pollen allergen Phl p 4.0202
publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
source organism Phleum pratense
total genus 160
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pvjA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pvjA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pvjA03
2BVHA 5L6GA 3NVZB 2WDWA 1W1MA 2QPMA 4PVEA 3DQ0A 3RJ8A 1N60C 1UXYA 1VAOA 1W1QA 2Y3RA 1MBBA 1AHZA 1T3QC 2Q85A 4OALA 1FO4A 1DIIA 1N61C 2E3TA 3S1EA 1I19A 2VAOA 1W1LA 3S1DA 4PWCA 4MLAA 2VFRA 1JROA 3SR6B 2QKNA 5HHZA 4O95A 4BC9A 2VFSA 3VTEA 1N62C 2BVGA 1E8GA 1WVFA 5AE1A 5HQXA 5FXDA 2EXRA 3BW7A 3W8XA 1DIQA 1N63C 1W1RA 2W3SA 1AHUA 4XLOA 1FIQB 1QLUA 2Y08A 4JB1A 4PVKA 2I0KA 5D79A 5HMRA 4PYTA 3ETRB 3S1FA 3RJAA 3D2DA 1E0YA 4PZFA 4EC3A 1ZR6A 1HSKA 3C0PA 2IPIA 1ZXIC 1E8FA 1W1JA 3FW9A 4ML8A 3W8WA 5AE2A 5FXPA 2W3RA 3W8ZA 5K8EA 2VFTA 1VDVA 2GQTA 1E8HA 3D2JA 3TSJA 5FXEA 3FW7A 1FFVC 3PQBA 1W1SA 4PVHA 3GSYA 4UD8A 4BBYA 3TX1A 4PVJA 4BCAA 1N5WC 2VFUA 2Y3SA 3PM9A 5L6FA 1FFUC 1WVEA 3NRZB 5AE3A 3AMZA 3POPA 3AM9A 3AN1A 3NS1B 1AHVA 1V97A 3KJMA 2VFVA 3B9JB 2Y4GA 3EUB3 2BVFA 4PWBA 2W54A 3JS8A 5ADZA 1WYGA 4BC7A 5I1WA 3HSUA 1DZNA 2W55A 4JAYA 5I1VA 1N5XA 5FXFA 5AWVA 1W1OA 1F0XA 4ZOHB 2MBRA 3FW8A 3S1CA 4DNSA 2GQUA 1MBTA 3TSHA 3I99A 2AXRA 1QLTA 2Q4WA 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH superfamily
2BVHA 5L6GA 2UUVA 3NVZB 2WDWA 1W1MA 2QPMA 4PVEA 3DQ0A 3RJ8A 1N60C 1UXYA 1VAOA 1W1QA 2Y3RA 1MBBA 1AHZA 1T3QC 2Q85A 3EJBB 4OALA 1FO4A 1DIIA 1N61C 2E3TA 3S1EA 3DEDA 1I19A 2VAOA 1W1LA 3S1DA 4PWCA 4MLAA 2VFRA 1JROA 3SR6B 2QKNA 5HHZA 4O95A 4BC9A 2VFSA 3VTEA 1N62C 2BVGA 1E8GA 1WVFA 5AE1A 5HQXA 5FXDA 2EXRA 3BW7A 3W8XA 2P3HA 1DIQA 2R8DA 1N63C 1W1RA 2W3SA 1AHUA 4XLOA 1FIQB 1QLUA 1JRPA 2Y08A 4JB1A 4PVKA 2I0KA 5D79A 5HMRA 4PYTA 3ETRB 4HG0A 3S1FA 3RJAA 3D2DA 1E0YA 4PZFA 4EC3A 1ZR6A 2P13A 1HSKA 3C0PA 2IPIA 1ZXIC 3LLBA 1E8FA 1W1JA 3FW9A 4ML8A 3W8WA 5AE2A 5FXPA 2RK5A 2W3RA 3NVYB 3W8ZA 5K8EA 2VFTA 1VDVA 2GQTA 5G5HB 2R2ZA 1RM6B 1E8HA 3D2JA 3TSJA 5FXEA 3NVVB 3FW7A 2O3GA 1FFVC 3PQBA 1W1SA 4PVHA 5G5GB 3NVWB 3GSYA 4UD8A 4BBYA 3TX1A 4PVJA 2YVSA 4BCAA 1N5WC 2VFUA 2Y3SA 3PM9A 2P4PA 1FFUC 1WVEA 3HRDC 5L6FA 3NRZB 5AE3A 2UUUA 2OAIA 3AMZA 3POPA 3AM9A 3AN1A 3NS1B 1AHVA 1V97A 3KJMA 2VFVA 2PLSA 3EJEB 3B9JB 2Y4GA 3EUB3 2BVFA 4PWBA 3EJDB 2W54A 3LAEA 3JS8A 5ADZA 2PLIA 1WYGA 4BC7A 5I1WA 3HSUA 1DZNA 2W55A 4JAYA 5I1VA 1N5XA 5FXFA 5AWVA 1W1OA 1F0XA 4ZOHB 2MBRA 2NQWA 3FW8A 3S1CA 4DNSA 1SB3B 2GQUA 1MBTA 3TSHA 3I99A 2AXRA 1QLTA 2Q4WA 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH topology
2BVHA 5L6GA 2UUVA 3NVZB 2WDWA 1W1MA 2QPMA 4PVEA 3DQ0A 3RJ8A 1N60C 1UXYA 1VAOA 1W1QA 2Y3RA 1MBBA 1AHZA 1T3QC 2Q85A 4OALA 1FO4A 1DIIA 1N61C 2E3TA 3S1EA 3DEDA 1I19A 2VAOA 1W1LA 3S1DA 4PWCA 4MLAA 2VFRA 1JROA 3SR6B 2QKNA 5HHZA 4O95A 4BC9A 2VFSA 3VTEA 1N62C 2BVGA 1E8GA 1WVFA 5AE1A 5HQXA 5FXDA 2EXRA 3BW7A 3W8XA 2P3HA 1DIQA 2R8DA 1N63C 1W1RA 2W3SA 1AHUA 4XLOA 1FIQB 1QLUA 1JRPA 2Y08A 4JB1A 4PVKA 2I0KA 5D79A 5HMRA 4PYTA 3ETRB 4HG0A 3S1FA 3RJAA 3D2DA 1E0YA 4PZFA 4EC3A 1ZR6A 2P13A 1HSKA 3C0PA 2IPIA 1ZXIC 3LLBA 1E8FA 1W1JA 3FW9A 4ML8A 3W8WA 5AE2A 5FXPA 2RK5A 2W3RA 3NVYB 3W8ZA 5K8EA 2VFTA 1VDVA 2GQTA 5G5HB 2R2ZA 1RM6B 1E8HA 3D2JA 3TSJA 5FXEA 3NVVB 3FW7A 2O3GA 1FFVC 3PQBA 1W1SA 4PVHA 5G5GB 3NVWB 3GSYA 4UD8A 4BBYA 3TX1A 4PVJA 2YVSA 4BCAA 1N5WC 2VFUA 2Y3SA 3PM9A 2P4PA 1FFUC 1WVEA 3HRDC 5L6FA 3NRZB 5AE3A 2UUUA 2OAIA 3AMZA 3POPA 3AM9A 3AN1A 3NS1B 1AHVA 1V97A 3KJMA 2VFVA 2PLSA 3B9JB 2Y4GA 3EUB3 2BVFA 4PWBA 2W54A 3LAEA 3JS8A 5ADZA 2PLIA 1WYGA 4BC7A 5I1WA 3HSUA 1DZNA 2W55A 4JAYA 5I1VA 1N5XA 5FXFA 5AWVA 1W1OA 1F0XA 4ZOHB 2MBRA 2NQWA 3FW8A 3S1CA 4DNSA 1SB3B 2GQUA 1MBTA 3TSHA 3I99A 2AXRA 1QLTA 2Q4WA 1W1KA 3D2HA 3FWAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BVH A;  5L6G A;  3NVZ B;  2WDW A;  1W1M A;  2QPM A;  4PVE A;  3DQ0 A;  3RJ8 A;  1N60 C;  1UXY A;  1VAO A;  1W1Q A;  2Y3R A;  1MBB A;  1AHZ A;  1T3Q C;  2Q85 A;  4OAL A;  1FO4 A;  1DII A;  1N61 C;  2E3T A;  3S1E A;  1I19 A;  2VAO A;  1W1L A;  3S1D A;  4PWC A;  4MLA A;  2VFR A;  1JRO A;  3SR6 B;  2QKN A;  5HHZ A;  4O95 A;  4BC9 A;  2VFS A;  3VTE A;  1N62 C;  2BVG A;  1E8G A;  1WVF A;  5AE1 A;  5HQX A;  5FXD A;  2EXR A;  3BW7 A;  3W8X A;  1DIQ A;  1N63 C;  1W1R A;  2W3S A;  1AHU A;  4XLO A;  1FIQ B;  1QLU A;  2Y08 A;  4JB1 A;  4PVK A;  2I0K A;  5D79 A;  5HMR A;  4PYT A;  3ETR B;  3S1F A;  3RJA A;  3D2D A;  1E0Y A;  4PZF A;  4EC3 A;  1ZR6 A;  1HSK A;  3C0P A;  2IPI A;  1ZXI C;  1E8F A;  1W1J A;  3FW9 A;  4ML8 A;  3W8W A;  5AE2 A;  5FXP A;  2W3R A;  3W8Z A;  5K8E A;  2VFT A;  1VDV A;  2GQT A;  1E8H A;  3D2J A;  3TSJ A;  5FXE A;  3FW7 A;  1FFV C;  3PQB A;  1W1S A;  4PVH A;  3GSY A;  4UD8 A;  4BBY A;  3TX1 A;  4PVJ A;  4BCA A;  1N5W C;  2VFU A;  2Y3S A;  3PM9 A;  5L6F A;  1FFU C;  1WVE A;  3NRZ B;  5AE3 A;  3AMZ A;  3POP A;  3AM9 A;  3AN1 A;  3NS1 B;  1AHV A;  1V97 A;  3KJM A;  2VFV A;  3B9J B;  2Y4G A;  3EUB 3;  2BVF A;  4PWB A;  2W54 A;  3JS8 A;  5ADZ A;  1WYG A;  4BC7 A;  5I1W A;  3HSU A;  1DZN A;  2W55 A;  4JAY A;  5I1V A;  1N5X A;  5FXF A;  5AWV A;  1W1O A;  1F0X A;  4ZOH B;  2MBR A;  3FW8 A;  3S1C A;  4DNS A;  2GQU A;  1MBT A;  3TSH A;  3I99 A;  2AXR A;  1QLT A;  2Q4W A;  1W1K A;  3D2H A;  3FWA A; 
#chains in the Genus database with same CATH topology
 2BVH A;  5L6G A;  2UUV A;  3NVZ B;  2WDW A;  1W1M A;  2QPM A;  4PVE A;  3DQ0 A;  3RJ8 A;  1N60 C;  1UXY A;  1VAO A;  1W1Q A;  2Y3R A;  1MBB A;  1AHZ A;  1T3Q C;  2Q85 A;  3EJB B;  4OAL A;  1FO4 A;  1DII A;  1N61 C;  2E3T A;  3S1E A;  3DED A;  1I19 A;  2VAO A;  1W1L A;  3S1D A;  4PWC A;  4MLA A;  2VFR A;  1JRO A;  3SR6 B;  2QKN A;  5HHZ A;  4O95 A;  4BC9 A;  2VFS A;  3VTE A;  1N62 C;  2BVG A;  1E8G A;  1WVF A;  5AE1 A;  5HQX A;  5FXD A;  2EXR A;  3BW7 A;  3W8X A;  2P3H A;  1DIQ A;  2R8D A;  1N63 C;  1W1R A;  2W3S A;  1AHU A;  4XLO A;  1FIQ B;  1QLU A;  1JRP A;  2Y08 A;  4JB1 A;  4PVK A;  2I0K A;  5D79 A;  5HMR A;  4PYT A;  3ETR B;  4HG0 A;  3S1F A;  3RJA A;  3D2D A;  1E0Y A;  4PZF A;  4EC3 A;  1ZR6 A;  2P13 A;  1HSK A;  3C0P A;  2IPI A;  1ZXI C;  3LLB A;  1E8F A;  1W1J A;  3FW9 A;  4ML8 A;  3W8W A;  5AE2 A;  5FXP A;  2RK5 A;  2W3R A;  3NVY B;  3W8Z A;  5K8E A;  2VFT A;  1VDV A;  2GQT A;  5G5H B;  2R2Z A;  1RM6 B;  1E8H A;  3D2J A;  3TSJ A;  5FXE A;  3NVV B;  3FW7 A;  2O3G A;  1FFV C;  3PQB A;  1W1S A;  4PVH A;  5G5G B;  3NVW B;  3GSY A;  4UD8 A;  4BBY A;  3TX1 A;  4PVJ A;  2YVS A;  4BCA A;  1N5W C;  2VFU A;  2Y3S A;  3PM9 A;  2P4P A;  1FFU C;  1WVE A;  3HRD C;  5L6F A;  3NRZ B;  5AE3 A;  2UUU A;  2OAI A;  3AMZ A;  3POP A;  3AM9 A;  3AN1 A;  3NS1 B;  1AHV A;  1V97 A;  3KJM A;  2VFV A;  2PLS A;  3EJE B;  3B9J B;  2Y4G A;  3EUB 3;  2BVF A;  4PWB A;  3EJD B;  2W54 A;  3LAE A;  3JS8 A;  5ADZ A;  2PLI A;  1WYG A;  4BC7 A;  5I1W A;  3HSU A;  1DZN A;  2W55 A;  4JAY A;  5I1V A;  1N5X A;  5FXF A;  5AWV A;  1W1O A;  1F0X A;  4ZOH B;  2MBR A;  2NQW A;  3FW8 A;  3S1C A;  4DNS A;  1SB3 B;  2GQU A;  1MBT A;  3TSH A;  3I99 A;  2AXR A;  1QLT A;  2Q4W A;  1W1K A;  3D2H A;  3FWA A; 
#chains in the Genus database with same CATH homology
 2BVH A;  5L6G A;  2UUV A;  3NVZ B;  2WDW A;  1W1M A;  2QPM A;  4PVE A;  3DQ0 A;  3RJ8 A;  1N60 C;  1UXY A;  1VAO A;  1W1Q A;  2Y3R A;  1MBB A;  1AHZ A;  1T3Q C;  2Q85 A;  4OAL A;  1FO4 A;  1DII A;  1N61 C;  2E3T A;  3S1E A;  3DED A;  1I19 A;  2VAO A;  1W1L A;  3S1D A;  4PWC A;  4MLA A;  2VFR A;  1JRO A;  3SR6 B;  2QKN A;  5HHZ A;  4O95 A;  4BC9 A;  2VFS A;  3VTE A;  1N62 C;  2BVG A;  1E8G A;  1WVF A;  5AE1 A;  5HQX A;  5FXD A;  2EXR A;  3BW7 A;  3W8X A;  2P3H A;  1DIQ A;  2R8D A;  1N63 C;  1W1R A;  2W3S A;  1AHU A;  4XLO A;  1FIQ B;  1QLU A;  1JRP A;  2Y08 A;  4JB1 A;  4PVK A;  2I0K A;  5D79 A;  5HMR A;  4PYT A;  3ETR B;  4HG0 A;  3S1F A;  3RJA A;  3D2D A;  1E0Y A;  4PZF A;  4EC3 A;  1ZR6 A;  2P13 A;  1HSK A;  3C0P A;  2IPI A;  1ZXI C;  3LLB A;  1E8F A;  1W1J A;  3FW9 A;  4ML8 A;  3W8W A;  5AE2 A;  5FXP A;  2RK5 A;  2W3R A;  3NVY B;  3W8Z A;  5K8E A;  2VFT A;  1VDV A;  2GQT A;  5G5H B;  2R2Z A;  1RM6 B;  1E8H A;  3D2J A;  3TSJ A;  5FXE A;  3NVV B;  3FW7 A;  2O3G A;  1FFV C;  3PQB A;  1W1S A;  4PVH A;  5G5G B;  3NVW B;  3GSY A;  4UD8 A;  4BBY A;  3TX1 A;  4PVJ A;  2YVS A;  4BCA A;  1N5W C;  2VFU A;  2Y3S A;  3PM9 A;  2P4P A;  1FFU C;  1WVE A;  3HRD C;  5L6F A;  3NRZ B;  5AE3 A;  2UUU A;  2OAI A;  3AMZ A;  3POP A;  3AM9 A;  3AN1 A;  3NS1 B;  1AHV A;  1V97 A;  3KJM A;  2VFV A;  2PLS A;  3B9J B;  2Y4G A;  3EUB 3;  2BVF A;  4PWB A;  2W54 A;  3LAE A;  3JS8 A;  5ADZ A;  2PLI A;  1WYG A;  4BC7 A;  5I1W A;  3HSU A;  1DZN A;  2W55 A;  4JAY A;  5I1V A;  1N5X A;  5FXF A;  5AWV A;  1W1O A;  1F0X A;  4ZOH B;  2MBR A;  2NQW A;  3FW8 A;  3S1C A;  4DNS A;  1SB3 B;  2GQU A;  1MBT A;  3TSH A;  3I99 A;  2AXR A;  1QLT A;  2Q4W A;  1W1K A;  3D2H A;  3FWA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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