5FXEA

Crystal structure of eugenol oxidase in complex with coniferyl alcohol
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords EUGENOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 184
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxeA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxeA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxeA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxeA03
2P13A 3C0PA 3S1EA 1VAOA 1SB3B 1E8FA 1VDVA 2QKNA 2NQWA 1MBBA 3LAEA 4PWCA 2Q4WA 1W1SA 3AN1A 1DZNA 3SR6B 3D2JA 3VTEA 5G5HB 2VFTA 3S1FA 1E8GA 4PWBA 1JROA 3W8XA 5HQXA 2BVFA 5AE2A 3W8ZA 4JAYA 1DIQA 2E3TA 4ML8A 4PVKA 5HMRA 1JRPA 5G5GB 4BC7A 2VFUA 2VFVA 3NVWB 1FFUC 2GQUA 1N63C 2Q85A 4HG0A 5AE1A 1WYGA 3NRZB 2VFRA 2W3RA 5HHZA 1AHZA 3LLBA 1E0YA 3B9JB 3DQ0A 1MBTA 5ADZA 2R8DA 2W55A 1W1MA 1W1QA 3D2HA 5D79A 3NVYB 3GSYA 1T3QC 4XLOA 3NVVB 1WVEA 2P3HA 2PLIA 3HRDC 2BVGA 2R2ZA 3FW8A 1W1OA 1HSKA 5FXDA 4PYTA 2OAIA 2W3SA 5FXEA 1ZXIC 2EXRA 4PVHA 2VAOA 4O95A 1I19A 3ETRB 3FWAA 4MLAA 2W54A 3W8WA 2YVSA 1RM6B 3BW7A 3D2DA 5FXFA 4BC9A 3TSJA 1W1KA 1AHVA 3S1CA 3AMZA 1W1LA 1N62C 4UD8A 1FFVC 1N61C 3S1DA 1N60C 3EUB3 1FIQB 4ZOHB 4DNSA 1UXYA 4PVJA 1FO4A 2PLSA 3TX1A 3FW9A 2BVHA 2QPMA 2AXRA 3KJMA 1ZR6A 4BCAA 1W1JA 3TSHA 3FW7A 1V97A 4JB1A 4EC3A 1QLTA 4PVEA 2P4PA 1W1RA 3JS8A 3NS1B 2MBRA 3NVZB 1AHUA 1DIIA 2GQTA 1N5XA 4PZFA 2I0KA 3PM9A 1E8HA 4BBYA 2O3GA 3DEDA 3AM9A 1F0XA 3I99A 5FXPA 1N5WC 1QLUA 2VFSA 1WVFA 4OALA 2RK5A 5AE3A
chains in the Genus database with same CATH superfamily
2P13A 2UUVA 3C0PA 3S1EA 1VAOA 1SB3B 1E8FA 1VDVA 2QKNA 2NQWA 1MBBA 3LAEA 4PWCA 2Q4WA 1W1SA 3AN1A 1DZNA 3SR6B 3D2JA 3VTEA 5AWVA 5G5HB 2VFTA 3S1FA 1E8GA 4PWBA 1JROA 3W8XA 5HQXA 2BVFA 3EJBB 5AE2A 3W8ZA 4JAYA 2UUUA 1DIQA 2E3TA 4ML8A 4PVKA 5HMRA 1JRPA 5G5GB 4BC7A 2VFUA 2VFVA 3NVWB 1FFUC 2GQUA 1N63C 2Q85A 4HG0A 5AE1A 3HSUA 1WYGA 3NRZB 2VFRA 2W3RA 3RJ8A 5HHZA 1AHZA 3EJEB 3EJDB 2Y08A 3LLBA 1E0YA 3B9JB 3DQ0A 1MBTA 5ADZA 2R8DA 2W55A 1W1MA 1W1QA 3D2HA 5D79A 3NVYB 3GSYA 5I1WA 1T3QC 4XLOA 3NVVB 1WVEA 2P3HA 2PLIA 3HRDC 2BVGA 2R2ZA 3FW8A 1W1OA 1HSKA 5FXDA 4PYTA 2OAIA 2W3SA 5FXEA 1ZXIC 2EXRA 4PVHA 2VAOA 2WDWA 3POPA 2IPIA 4O95A 1I19A 3ETRB 3FWAA 4MLAA 2W54A 3W8WA 5I1VA 2YVSA 1RM6B 3BW7A 3D2DA 5FXFA 4BC9A 3TSJA 1W1KA 1AHVA 3S1CA 3AMZA 1W1LA 1N62C 4UD8A 1FFVC 1N61C 3S1DA 1N60C 3EUB3 1FIQB 4ZOHB 4DNSA 1UXYA 4PVJA 1FO4A 2PLSA 3TX1A 5L6FA 3FW9A 2BVHA 2QPMA 2AXRA 2Y3SA 3KJMA 1ZR6A 4BCAA 1W1JA 3TSHA 3FW7A 1V97A 4JB1A 4EC3A 1QLTA 4PVEA 2P4PA 1W1RA 2Y3RA 5L6GA 3JS8A 3NS1B 2MBRA 3NVZB 1AHUA 1DIIA 3RJAA 2GQTA 5K8EA 1N5XA 4PZFA 2I0KA 3PM9A 1E8HA 3PQBA 4BBYA 2O3GA 3DEDA 3AM9A 1F0XA 3I99A 5FXPA 1N5WC 1QLUA 2Y4GA 2VFSA 1WVFA 4OALA 2RK5A 5AE3A
chains in the Genus database with same CATH topology
2P13A 2UUVA 3C0PA 3S1EA 1VAOA 1SB3B 1E8FA 1VDVA 2QKNA 2NQWA 1MBBA 3LAEA 4PWCA 2Q4WA 1W1SA 3AN1A 1DZNA 3SR6B 3D2JA 3VTEA 5AWVA 5G5HB 2VFTA 3S1FA 1E8GA 4PWBA 1JROA 3W8XA 5HQXA 2BVFA 5AE2A 3W8ZA 4JAYA 2UUUA 1DIQA 2E3TA 4ML8A 4PVKA 5HMRA 1JRPA 5G5GB 4BC7A 2VFUA 2VFVA 3NVWB 1FFUC 2GQUA 1N63C 2Q85A 4HG0A 5AE1A 3HSUA 1WYGA 3NRZB 2VFRA 2W3RA 3RJ8A 5HHZA 1AHZA 3LLBA 2Y08A 1E0YA 3B9JB 3DQ0A 1MBTA 5ADZA 2R8DA 2W55A 1W1MA 1W1QA 3D2HA 5D79A 3NVYB 3GSYA 5I1WA 1T3QC 4XLOA 3NVVB 1WVEA 2P3HA 2PLIA 3HRDC 2BVGA 2R2ZA 3FW8A 1W1OA 1HSKA 5FXDA 4PYTA 2OAIA 2W3SA 5FXEA 1ZXIC 2EXRA 4PVHA 2VAOA 2WDWA 3POPA 2IPIA 4O95A 1I19A 3ETRB 3FWAA 4MLAA 2W54A 3W8WA 5I1VA 2YVSA 1RM6B 3BW7A 3D2DA 5FXFA 4BC9A 3TSJA 1W1KA 1AHVA 3S1CA 3AMZA 1W1LA 1N62C 4UD8A 1FFVC 1N61C 3S1DA 1N60C 3EUB3 1FIQB 4ZOHB 4DNSA 1UXYA 4PVJA 1FO4A 2PLSA 3TX1A 5L6FA 3FW9A 2BVHA 2QPMA 2AXRA 2Y3SA 3KJMA 1ZR6A 4BCAA 1W1JA 3TSHA 3FW7A 1V97A 4JB1A 4EC3A 1QLTA 4PVEA 2P4PA 1W1RA 2Y3RA 5L6GA 3JS8A 3NS1B 2MBRA 3NVZB 1AHUA 1DIIA 3RJAA 2GQTA 5K8EA 1N5XA 4PZFA 2I0KA 3PM9A 1E8HA 3PQBA 4BBYA 2O3GA 3DEDA 3AM9A 1F0XA 3I99A 5FXPA 1N5WC 1QLUA 2Y4GA 2VFSA 1WVFA 4OALA 2RK5A 5AE3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P13 A;  3C0P A;  3S1E A;  1VAO A;  1SB3 B;  1E8F A;  1VDV A;  2QKN A;  2NQW A;  1MBB A;  3LAE A;  4PWC A;  2Q4W A;  1W1S A;  3AN1 A;  1DZN A;  3SR6 B;  3D2J A;  3VTE A;  5G5H B;  2VFT A;  3S1F A;  1E8G A;  4PWB A;  1JRO A;  3W8X A;  5HQX A;  2BVF A;  5AE2 A;  3W8Z A;  4JAY A;  1DIQ A;  2E3T A;  4ML8 A;  4PVK A;  5HMR A;  1JRP A;  5G5G B;  4BC7 A;  2VFU A;  2VFV A;  3NVW B;  1FFU C;  2GQU A;  1N63 C;  2Q85 A;  4HG0 A;  5AE1 A;  1WYG A;  3NRZ B;  2VFR A;  2W3R A;  5HHZ A;  1AHZ A;  3LLB A;  1E0Y A;  3B9J B;  3DQ0 A;  1MBT A;  5ADZ A;  2R8D A;  2W55 A;  1W1M A;  1W1Q A;  3D2H A;  5D79 A;  3NVY B;  3GSY A;  1T3Q C;  4XLO A;  3NVV B;  1WVE A;  2P3H A;  2PLI A;  3HRD C;  2BVG A;  2R2Z A;  3FW8 A;  1W1O A;  1HSK A;  5FXD A;  4PYT A;  2OAI A;  2W3S A;  5FXE A;  1ZXI C;  2EXR A;  4PVH A;  2VAO A;  4O95 A;  1I19 A;  3ETR B;  3FWA A;  4MLA A;  2W54 A;  3W8W A;  2YVS A;  1RM6 B;  3BW7 A;  3D2D A;  5FXF A;  4BC9 A;  3TSJ A;  1W1K A;  1AHV A;  3S1C A;  3AMZ A;  1W1L A;  1N62 C;  4UD8 A;  1FFV C;  1N61 C;  3S1D A;  1N60 C;  3EUB 3;  1FIQ B;  4ZOH B;  4DNS A;  1UXY A;  4PVJ A;  1FO4 A;  2PLS A;  3TX1 A;  3FW9 A;  2BVH A;  2QPM A;  2AXR A;  3KJM A;  1ZR6 A;  4BCA A;  1W1J A;  3TSH A;  3FW7 A;  1V97 A;  4JB1 A;  4EC3 A;  1QLT A;  4PVE A;  2P4P A;  1W1R A;  3JS8 A;  3NS1 B;  2MBR A;  3NVZ B;  1AHU A;  1DII A;  2GQT A;  1N5X A;  4PZF A;  2I0K A;  3PM9 A;  1E8H A;  4BBY A;  2O3G A;  3DED A;  3AM9 A;  1F0X A;  3I99 A;  5FXP A;  1N5W C;  1QLU A;  2VFS A;  1WVF A;  4OAL A;  2RK5 A;  5AE3 A; 
#chains in the Genus database with same CATH topology
 2P13 A;  2UUV A;  3C0P A;  3S1E A;  1VAO A;  1SB3 B;  1E8F A;  1VDV A;  2QKN A;  2NQW A;  1MBB A;  3LAE A;  4PWC A;  2Q4W A;  1W1S A;  3AN1 A;  1DZN A;  3SR6 B;  3D2J A;  3VTE A;  5AWV A;  5G5H B;  2VFT A;  3S1F A;  1E8G A;  4PWB A;  1JRO A;  3W8X A;  5HQX A;  2BVF A;  3EJB B;  5AE2 A;  3W8Z A;  4JAY A;  2UUU A;  1DIQ A;  2E3T A;  4ML8 A;  4PVK A;  5HMR A;  1JRP A;  5G5G B;  4BC7 A;  2VFU A;  2VFV A;  3NVW B;  1FFU C;  2GQU A;  1N63 C;  2Q85 A;  4HG0 A;  5AE1 A;  3HSU A;  1WYG A;  3NRZ B;  2VFR A;  2W3R A;  3RJ8 A;  5HHZ A;  1AHZ A;  3EJE B;  3EJD B;  2Y08 A;  3LLB A;  1E0Y A;  3B9J B;  3DQ0 A;  1MBT A;  5ADZ A;  2R8D A;  2W55 A;  1W1M A;  1W1Q A;  3D2H A;  5D79 A;  3NVY B;  3GSY A;  5I1W A;  1T3Q C;  4XLO A;  3NVV B;  1WVE A;  2P3H A;  2PLI A;  3HRD C;  2BVG A;  2R2Z A;  3FW8 A;  1W1O A;  1HSK A;  5FXD A;  4PYT A;  2OAI A;  2W3S A;  5FXE A;  1ZXI C;  2EXR A;  4PVH A;  2VAO A;  2WDW A;  3POP A;  2IPI A;  4O95 A;  1I19 A;  3ETR B;  3FWA A;  4MLA A;  2W54 A;  3W8W A;  5I1V A;  2YVS A;  1RM6 B;  3BW7 A;  3D2D A;  5FXF A;  4BC9 A;  3TSJ A;  1W1K A;  1AHV A;  3S1C A;  3AMZ A;  1W1L A;  1N62 C;  4UD8 A;  1FFV C;  1N61 C;  3S1D A;  1N60 C;  3EUB 3;  1FIQ B;  4ZOH B;  4DNS A;  1UXY A;  4PVJ A;  1FO4 A;  2PLS A;  3TX1 A;  5L6F A;  3FW9 A;  2BVH A;  2QPM A;  2AXR A;  2Y3S A;  3KJM A;  1ZR6 A;  4BCA A;  1W1J A;  3TSH A;  3FW7 A;  1V97 A;  4JB1 A;  4EC3 A;  1QLT A;  4PVE A;  2P4P A;  1W1R A;  2Y3R A;  5L6G A;  3JS8 A;  3NS1 B;  2MBR A;  3NVZ B;  1AHU A;  1DII A;  3RJA A;  2GQT A;  5K8E A;  1N5X A;  4PZF A;  2I0K A;  3PM9 A;  1E8H A;  3PQB A;  4BBY A;  2O3G A;  3DED A;  3AM9 A;  1F0X A;  3I99 A;  5FXP A;  1N5W C;  1QLU A;  2Y4G A;  2VFS A;  1WVF A;  4OAL A;  2RK5 A;  5AE3 A; 
#chains in the Genus database with same CATH homology
 2P13 A;  2UUV A;  3C0P A;  3S1E A;  1VAO A;  1SB3 B;  1E8F A;  1VDV A;  2QKN A;  2NQW A;  1MBB A;  3LAE A;  4PWC A;  2Q4W A;  1W1S A;  3AN1 A;  1DZN A;  3SR6 B;  3D2J A;  3VTE A;  5AWV A;  5G5H B;  2VFT A;  3S1F A;  1E8G A;  4PWB A;  1JRO A;  3W8X A;  5HQX A;  2BVF A;  5AE2 A;  3W8Z A;  4JAY A;  2UUU A;  1DIQ A;  2E3T A;  4ML8 A;  4PVK A;  5HMR A;  1JRP A;  5G5G B;  4BC7 A;  2VFU A;  2VFV A;  3NVW B;  1FFU C;  2GQU A;  1N63 C;  2Q85 A;  4HG0 A;  5AE1 A;  3HSU A;  1WYG A;  3NRZ B;  2VFR A;  2W3R A;  3RJ8 A;  5HHZ A;  1AHZ A;  3LLB A;  2Y08 A;  1E0Y A;  3B9J B;  3DQ0 A;  1MBT A;  5ADZ A;  2R8D A;  2W55 A;  1W1M A;  1W1Q A;  3D2H A;  5D79 A;  3NVY B;  3GSY A;  5I1W A;  1T3Q C;  4XLO A;  3NVV B;  1WVE A;  2P3H A;  2PLI A;  3HRD C;  2BVG A;  2R2Z A;  3FW8 A;  1W1O A;  1HSK A;  5FXD A;  4PYT A;  2OAI A;  2W3S A;  5FXE A;  1ZXI C;  2EXR A;  4PVH A;  2VAO A;  2WDW A;  3POP A;  2IPI A;  4O95 A;  1I19 A;  3ETR B;  3FWA A;  4MLA A;  2W54 A;  3W8W A;  5I1V A;  2YVS A;  1RM6 B;  3BW7 A;  3D2D A;  5FXF A;  4BC9 A;  3TSJ A;  1W1K A;  1AHV A;  3S1C A;  3AMZ A;  1W1L A;  1N62 C;  4UD8 A;  1FFV C;  1N61 C;  3S1D A;  1N60 C;  3EUB 3;  1FIQ B;  4ZOH B;  4DNS A;  1UXY A;  4PVJ A;  1FO4 A;  2PLS A;  3TX1 A;  5L6F A;  3FW9 A;  2BVH A;  2QPM A;  2AXR A;  2Y3S A;  3KJM A;  1ZR6 A;  4BCA A;  1W1J A;  3TSH A;  3FW7 A;  1V97 A;  4JB1 A;  4EC3 A;  1QLT A;  4PVE A;  2P4P A;  1W1R A;  2Y3R A;  5L6G A;  3JS8 A;  3NS1 B;  2MBR A;  3NVZ B;  1AHU A;  1DII A;  3RJA A;  2GQT A;  5K8E A;  1N5X A;  4PZF A;  2I0K A;  3PM9 A;  1E8H A;  3PQB A;  4BBY A;  2O3G A;  3DED A;  3AM9 A;  1F0X A;  3I99 A;  5FXP A;  1N5W C;  1QLU A;  2Y4G A;  2VFS A;  1WVF A;  4OAL A;  2RK5 A;  5AE3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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