4PWCA

Phl p 4 i153v n158h variant, a glucose oxidase, 3.5 m nabr soak
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGHFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Pollen allergen Phl p 4.0202
publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
source organism Phleum pratense
total genus 165
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pwcA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pwcA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pwcA03
4PVKA 2I0KA 3PM9A 1WYGA 1AHUA 3NRZB 3S1EA 5FXDA 3W8WA 1AHVA 1WVFA 4MLAA 4JB1A 5L6FA 2WDWA 3B9JB 2BVHA 3GSYA 1W1KA 5D79A 3ETRB 1VAOA 4PZFA 4PWCA 1E8GA 1N62C 4ML8A 2Y3RA 2VAOA 2IPIA 1E0YA 5I1VA 5L6GA 5FXPA 2MBRA 2BVFA 3FW9A 1QLUA 2Y3SA 1VDVA 5FXFA 1ZXIC 3FW7A 3HSUA 4XLOA 1E8FA 1E8HA 4BC7A 1FIQB 1W1OA 5AE3A 3S1CA 2GQTA 2E3TA 1DZNA 2W54A 3AMZA 2Y4GA 1DIQA 3AM9A 3I99A 3BW7A 5FXEA 2AXRA 2VFRA 1AHZA 2VFVA 1W1SA 3VTEA 5AE1A 1FO4A 3S1DA 3RJ8A 2Q4WA 3DQ0A 2VFUA 1MBTA 4EC3A 1QLTA 3RJAA 5HHZA 4DNSA 2Y08A 3S1FA 1N61C 2Q85A 1N60C 4JAYA 1W1QA 1MBBA 3TSJA 2VFTA 1HSKA 5I1WA 3EUB3 1N5XA 1W1LA 3AN1A 4BCAA 3NVZB 3W8XA 1DIIA 1JROA 3D2JA 1I19A 1N5WC 5HMRA 2W3SA 1W1RA 1T3QC 1V97A 3C0PA 3FWAA 1W1MA 2VFSA 2W55A 4UD8A 3KJMA 3PQBA 5AE2A 1W1JA 3JS8A 5AWVA 2GQUA 2QKNA 4PYTA 1N63C 5K8EA 4PVJA 1F0XA 5ADZA 2EXRA 3POPA 3W8ZA 4PWBA 3FW8A 1FFUC 1WVEA 2QPMA 1UXYA 3NS1B 1FFVC 4OALA 4PVHA 4PVEA 4BBYA 5HQXA 4BC9A 3D2HA 4ZOHB 3D2DA 2BVGA 2W3RA 3TX1A 4O95A 3TSHA 1ZR6A 3SR6B
chains in the Genus database with same CATH superfamily
4PVKA 1SB3B 2I0KA 3PM9A 2NQWA 1WYGA 1AHUA 3NRZB 2O3GA 3EJEB 3S1EA 5FXDA 3W8WA 1AHVA 1WVFA 3EJBB 4MLAA 4JB1A 5L6FA 2WDWA 3B9JB 2BVHA 3GSYA 1W1KA 5D79A 3ETRB 1VAOA 4PZFA 4PWCA 1E8GA 1N62C 4ML8A 2Y3RA 2VAOA 2IPIA 1E0YA 5I1VA 2RK5A 3HRDC 5L6GA 5FXPA 2MBRA 3LAEA 2BVFA 3FW9A 1QLUA 2Y3SA 1VDVA 5FXFA 1ZXIC 3FW7A 3HSUA 4XLOA 2P13A 1E8FA 3NVYB 1E8HA 3EJDB 4BC7A 1FIQB 2R8DA 1W1OA 5AE3A 3S1CA 2GQTA 2E3TA 1DZNA 2W54A 3AMZA 2Y4GA 1DIQA 3AM9A 3I99A 3BW7A 5FXEA 3NVWB 2AXRA 2VFRA 1AHZA 2PLIA 2VFVA 2YVSA 1W1SA 3VTEA 5AE1A 1FO4A 3S1DA 3RJ8A 2Q4WA 3DQ0A 2VFUA 2UUVA 1MBTA 4EC3A 4HG0A 1QLTA 3RJAA 5HHZA 4DNSA 2Y08A 2P4PA 3S1FA 1N61C 2Q85A 5G5HB 1N60C 3DEDA 4JAYA 1W1QA 1MBBA 3NVVB 3TSJA 2VFTA 1HSKA 5I1WA 2UUUA 3EUB3 1N5XA 1W1LA 3AN1A 4BCAA 3NVZB 3W8XA 2P3HA 1DIIA 1JROA 3D2JA 1I19A 1N5WC 5HMRA 2W3SA 1W1RA 1T3QC 1V97A 1JRPA 3C0PA 2PLSA 3FWAA 1W1MA 2VFSA 2W55A 4UD8A 2OAIA 2R2ZA 3KJMA 1RM6B 5G5GB 3PQBA 5AE2A 1W1JA 3JS8A 5AWVA 2GQUA 2QKNA 4PYTA 1N63C 5K8EA 4PVJA 1F0XA 5ADZA 2EXRA 3POPA 3W8ZA 4PWBA 3FW8A 1FFUC 1WVEA 2QPMA 1UXYA 3NS1B 1FFVC 4OALA 4PVHA 4PVEA 4BBYA 5HQXA 4BC9A 3D2HA 4ZOHB 3D2DA 2BVGA 2W3RA 3TX1A 4O95A 3TSHA 1ZR6A 3LLBA 3SR6B
chains in the Genus database with same CATH topology
4PVKA 1SB3B 2I0KA 3PM9A 2NQWA 1WYGA 1AHUA 3NRZB 2O3GA 3S1EA 5FXDA 3W8WA 1AHVA 1WVFA 4MLAA 4JB1A 5L6FA 2WDWA 3B9JB 2BVHA 3GSYA 1W1KA 5D79A 3ETRB 1VAOA 4PZFA 4PWCA 1E8GA 1N62C 4ML8A 2Y3RA 2VAOA 2IPIA 1E0YA 5I1VA 2RK5A 3HRDC 5L6GA 5FXPA 2MBRA 3LAEA 2BVFA 3FW9A 1QLUA 2Y3SA 1VDVA 5FXFA 1ZXIC 3FW7A 3HSUA 4XLOA 2P13A 1E8FA 3NVYB 1E8HA 4BC7A 1FIQB 2R8DA 1W1OA 5AE3A 3S1CA 2GQTA 2E3TA 1DZNA 2W54A 3AMZA 2Y4GA 1DIQA 3AM9A 3I99A 3BW7A 5FXEA 3NVWB 2AXRA 2VFRA 1AHZA 2PLIA 2VFVA 2YVSA 1W1SA 3VTEA 5AE1A 1FO4A 3S1DA 3RJ8A 2Q4WA 3DQ0A 2VFUA 2UUVA 1MBTA 4EC3A 4HG0A 1QLTA 3RJAA 5HHZA 4DNSA 2Y08A 2P4PA 3S1FA 1N61C 2Q85A 5G5HB 1N60C 3DEDA 4JAYA 1W1QA 1MBBA 3NVVB 3TSJA 2VFTA 1HSKA 5I1WA 2UUUA 3EUB3 1N5XA 1W1LA 3AN1A 4BCAA 3NVZB 3W8XA 2P3HA 1DIIA 1JROA 3D2JA 1I19A 1N5WC 5HMRA 2W3SA 1W1RA 1T3QC 1V97A 1JRPA 3C0PA 2PLSA 3FWAA 1W1MA 2VFSA 2W55A 4UD8A 2OAIA 2R2ZA 3KJMA 1RM6B 5G5GB 3PQBA 5AE2A 1W1JA 3JS8A 5AWVA 2GQUA 2QKNA 4PYTA 1N63C 5K8EA 4PVJA 1F0XA 5ADZA 2EXRA 3POPA 3W8ZA 4PWBA 3FW8A 1FFUC 1WVEA 2QPMA 1UXYA 3NS1B 1FFVC 4OALA 4PVHA 4PVEA 4BBYA 5HQXA 4BC9A 3D2HA 4ZOHB 3D2DA 2BVGA 2W3RA 3TX1A 4O95A 3TSHA 1ZR6A 3LLBA 3SR6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVK A;  2I0K A;  3PM9 A;  1WYG A;  1AHU A;  3NRZ B;  3S1E A;  5FXD A;  3W8W A;  1AHV A;  1WVF A;  4MLA A;  4JB1 A;  5L6F A;  2WDW A;  3B9J B;  2BVH A;  3GSY A;  1W1K A;  5D79 A;  3ETR B;  1VAO A;  4PZF A;  4PWC A;  1E8G A;  1N62 C;  4ML8 A;  2Y3R A;  2VAO A;  2IPI A;  1E0Y A;  5I1V A;  5L6G A;  5FXP A;  2MBR A;  2BVF A;  3FW9 A;  1QLU A;  2Y3S A;  1VDV A;  5FXF A;  1ZXI C;  3FW7 A;  3HSU A;  4XLO A;  1E8F A;  1E8H A;  4BC7 A;  1FIQ B;  1W1O A;  5AE3 A;  3S1C A;  2GQT A;  2E3T A;  1DZN A;  2W54 A;  3AMZ A;  2Y4G A;  1DIQ A;  3AM9 A;  3I99 A;  3BW7 A;  5FXE A;  2AXR A;  2VFR A;  1AHZ A;  2VFV A;  1W1S A;  3VTE A;  5AE1 A;  1FO4 A;  3S1D A;  3RJ8 A;  2Q4W A;  3DQ0 A;  2VFU A;  1MBT A;  4EC3 A;  1QLT A;  3RJA A;  5HHZ A;  4DNS A;  2Y08 A;  3S1F A;  1N61 C;  2Q85 A;  1N60 C;  4JAY A;  1W1Q A;  1MBB A;  3TSJ A;  2VFT A;  1HSK A;  5I1W A;  3EUB 3;  1N5X A;  1W1L A;  3AN1 A;  4BCA A;  3NVZ B;  3W8X A;  1DII A;  1JRO A;  3D2J A;  1I19 A;  1N5W C;  5HMR A;  2W3S A;  1W1R A;  1T3Q C;  1V97 A;  3C0P A;  3FWA A;  1W1M A;  2VFS A;  2W55 A;  4UD8 A;  3KJM A;  3PQB A;  5AE2 A;  1W1J A;  3JS8 A;  5AWV A;  2GQU A;  2QKN A;  4PYT A;  1N63 C;  5K8E A;  4PVJ A;  1F0X A;  5ADZ A;  2EXR A;  3POP A;  3W8Z A;  4PWB A;  3FW8 A;  1FFU C;  1WVE A;  2QPM A;  1UXY A;  3NS1 B;  1FFV C;  4OAL A;  4PVH A;  4PVE A;  4BBY A;  5HQX A;  4BC9 A;  3D2H A;  4ZOH B;  3D2D A;  2BVG A;  2W3R A;  3TX1 A;  4O95 A;  3TSH A;  1ZR6 A;  3SR6 B; 
#chains in the Genus database with same CATH topology
 4PVK A;  1SB3 B;  2I0K A;  3PM9 A;  2NQW A;  1WYG A;  1AHU A;  3NRZ B;  2O3G A;  3EJE B;  3S1E A;  5FXD A;  3W8W A;  1AHV A;  1WVF A;  3EJB B;  4MLA A;  4JB1 A;  5L6F A;  2WDW A;  3B9J B;  2BVH A;  3GSY A;  1W1K A;  5D79 A;  3ETR B;  1VAO A;  4PZF A;  4PWC A;  1E8G A;  1N62 C;  4ML8 A;  2Y3R A;  2VAO A;  2IPI A;  1E0Y A;  5I1V A;  2RK5 A;  3HRD C;  5L6G A;  5FXP A;  2MBR A;  3LAE A;  2BVF A;  3FW9 A;  1QLU A;  2Y3S A;  1VDV A;  5FXF A;  1ZXI C;  3FW7 A;  3HSU A;  4XLO A;  2P13 A;  1E8F A;  3NVY B;  1E8H A;  3EJD B;  4BC7 A;  1FIQ B;  2R8D A;  1W1O A;  5AE3 A;  3S1C A;  2GQT A;  2E3T A;  1DZN A;  2W54 A;  3AMZ A;  2Y4G A;  1DIQ A;  3AM9 A;  3I99 A;  3BW7 A;  5FXE A;  3NVW B;  2AXR A;  2VFR A;  1AHZ A;  2PLI A;  2VFV A;  2YVS A;  1W1S A;  3VTE A;  5AE1 A;  1FO4 A;  3S1D A;  3RJ8 A;  2Q4W A;  3DQ0 A;  2VFU A;  2UUV A;  1MBT A;  4EC3 A;  4HG0 A;  1QLT A;  3RJA A;  5HHZ A;  4DNS A;  2Y08 A;  2P4P A;  3S1F A;  1N61 C;  2Q85 A;  5G5H B;  1N60 C;  3DED A;  4JAY A;  1W1Q A;  1MBB A;  3NVV B;  3TSJ A;  2VFT A;  1HSK A;  5I1W A;  2UUU A;  3EUB 3;  1N5X A;  1W1L A;  3AN1 A;  4BCA A;  3NVZ B;  3W8X A;  2P3H A;  1DII A;  1JRO A;  3D2J A;  1I19 A;  1N5W C;  5HMR A;  2W3S A;  1W1R A;  1T3Q C;  1V97 A;  1JRP A;  3C0P A;  2PLS A;  3FWA A;  1W1M A;  2VFS A;  2W55 A;  4UD8 A;  2OAI A;  2R2Z A;  3KJM A;  1RM6 B;  5G5G B;  3PQB A;  5AE2 A;  1W1J A;  3JS8 A;  5AWV A;  2GQU A;  2QKN A;  4PYT A;  1N63 C;  5K8E A;  4PVJ A;  1F0X A;  5ADZ A;  2EXR A;  3POP A;  3W8Z A;  4PWB A;  3FW8 A;  1FFU C;  1WVE A;  2QPM A;  1UXY A;  3NS1 B;  1FFV C;  4OAL A;  4PVH A;  4PVE A;  4BBY A;  5HQX A;  4BC9 A;  3D2H A;  4ZOH B;  3D2D A;  2BVG A;  2W3R A;  3TX1 A;  4O95 A;  3TSH A;  1ZR6 A;  3LLB A;  3SR6 B; 
#chains in the Genus database with same CATH homology
 4PVK A;  1SB3 B;  2I0K A;  3PM9 A;  2NQW A;  1WYG A;  1AHU A;  3NRZ B;  2O3G A;  3S1E A;  5FXD A;  3W8W A;  1AHV A;  1WVF A;  4MLA A;  4JB1 A;  5L6F A;  2WDW A;  3B9J B;  2BVH A;  3GSY A;  1W1K A;  5D79 A;  3ETR B;  1VAO A;  4PZF A;  4PWC A;  1E8G A;  1N62 C;  4ML8 A;  2Y3R A;  2VAO A;  2IPI A;  1E0Y A;  5I1V A;  2RK5 A;  3HRD C;  5L6G A;  5FXP A;  2MBR A;  3LAE A;  2BVF A;  3FW9 A;  1QLU A;  2Y3S A;  1VDV A;  5FXF A;  1ZXI C;  3FW7 A;  3HSU A;  4XLO A;  2P13 A;  1E8F A;  3NVY B;  1E8H A;  4BC7 A;  1FIQ B;  2R8D A;  1W1O A;  5AE3 A;  3S1C A;  2GQT A;  2E3T A;  1DZN A;  2W54 A;  3AMZ A;  2Y4G A;  1DIQ A;  3AM9 A;  3I99 A;  3BW7 A;  5FXE A;  3NVW B;  2AXR A;  2VFR A;  1AHZ A;  2PLI A;  2VFV A;  2YVS A;  1W1S A;  3VTE A;  5AE1 A;  1FO4 A;  3S1D A;  3RJ8 A;  2Q4W A;  3DQ0 A;  2VFU A;  2UUV A;  1MBT A;  4EC3 A;  4HG0 A;  1QLT A;  3RJA A;  5HHZ A;  4DNS A;  2Y08 A;  2P4P A;  3S1F A;  1N61 C;  2Q85 A;  5G5H B;  1N60 C;  3DED A;  4JAY A;  1W1Q A;  1MBB A;  3NVV B;  3TSJ A;  2VFT A;  1HSK A;  5I1W A;  2UUU A;  3EUB 3;  1N5X A;  1W1L A;  3AN1 A;  4BCA A;  3NVZ B;  3W8X A;  2P3H A;  1DII A;  1JRO A;  3D2J A;  1I19 A;  1N5W C;  5HMR A;  2W3S A;  1W1R A;  1T3Q C;  1V97 A;  1JRP A;  3C0P A;  2PLS A;  3FWA A;  1W1M A;  2VFS A;  2W55 A;  4UD8 A;  2OAI A;  2R2Z A;  3KJM A;  1RM6 B;  5G5G B;  3PQB A;  5AE2 A;  1W1J A;  3JS8 A;  5AWV A;  2GQU A;  2QKN A;  4PYT A;  1N63 C;  5K8E A;  4PVJ A;  1F0X A;  5ADZ A;  2EXR A;  3POP A;  3W8Z A;  4PWB A;  3FW8 A;  1FFU C;  1WVE A;  2QPM A;  1UXY A;  3NS1 B;  1FFV C;  4OAL A;  4PVH A;  4PVE A;  4BBY A;  5HQX A;  4BC9 A;  3D2H A;  4ZOH B;  3D2D A;  2BVG A;  2W3R A;  3TX1 A;  4O95 A;  3TSH A;  1ZR6 A;  3LLB A;  3SR6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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