1AHZA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with 4-(1-heptenyl)phenol
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 160
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahzA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahzA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahzA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahzA03
4PYTA 1AHZA 2R2ZA 4PVHA 3I99A 1W1RA 2VFVA 5HHZA 2W3RA 4BBYA 1T3QC 3AMZA 1DIQA 3NVYB 1DZNA 2W55A 5AE3A 1W1MA 1RM6B 3S1EA 1N61C 2BVFA 3TSHA 4XLOA 3D2JA 2Q4WA 5D79A 2MBRA 3NVZB 3D2DA 4UD8A 2EXRA 2AXRA 2E3TA 1E8GA 1UXYA 1ZR6A 3JS8A 1QLTA 3B9JB 3KJMA 1W1KA 3FW7A 1MBBA 1I19A 2PLIA 4BC7A 1E8FA 1W1JA 4PVEA 1JROA 1VAOA 3VTEA 2GQTA 3FW9A 4PWCA 1ZXIC 4ZOHB 1W1SA 3HRDC 1N63C 4PVJA 1AHUA 2BVGA 1WVFA 3W8WA 2P4PA 3NS1B 3S1FA 2P3HA 2YVSA 3DQ0A 5FXFA 4PWBA 3ETRB 5HMRA 2QPMA 5FXPA 1E0YA 1N60C 1N62C 1W1QA 1HSKA 4DNSA 3AN1A 1SB3B 2PLSA 1FFUC 3S1CA 5HQXA 2VFTA 5FXEA 4HG0A 1FFVC 2OAIA 5G5GB 1N5XA 2QKNA 1W1OA 1FO4A 1QLUA 4BCAA 4JB1A 1VDVA 3S1DA 3DEDA 5AE1A 1V97A 2I0KA 4OALA 4BC9A 3FWAA 1E8HA 3GSYA 5G5HB 2P13A 3EUB3 1WVEA 1AHVA 3NVWB 2VAOA 1MBTA 3C0PA 3FW8A 2W54A 3W8ZA 2RK5A 2VFUA 2VFSA 4MLAA 4PZFA 1JRPA 3NRZB 1FIQB 4O95A 1F0XA 5FXDA 5ADZA 3D2HA 1DIIA 4PVKA 4JAYA 3LLBA 3PM9A 3TX1A 2O3GA 2BVHA 3AM9A 2GQUA 3LAEA 2Q85A 2NQWA 1W1LA 3NVVB 4EC3A 3W8XA 1WYGA 3SR6B 5AE2A 2R8DA 2VFRA 3TSJA 2W3SA 3BW7A 1N5WC 4ML8A
chains in the Genus database with same CATH superfamily
4PYTA 1AHZA 2R2ZA 4PVHA 3I99A 2Y4GA 1W1RA 2VFVA 5HHZA 2W3RA 4BBYA 1T3QC 3AMZA 1DIQA 3NVYB 1DZNA 2W55A 5AE3A 1W1MA 1RM6B 3S1EA 1N61C 2BVFA 3TSHA 3PQBA 4XLOA 3D2JA 3EJEB 2Q4WA 5D79A 2MBRA 2Y3RA 3NVZB 3D2DA 4UD8A 2EXRA 2AXRA 2E3TA 1E8GA 1UXYA 1ZR6A 3JS8A 1QLTA 3B9JB 3KJMA 1W1KA 3FW7A 1MBBA 1I19A 2PLIA 4BC7A 1E8FA 1W1JA 4PVEA 1JROA 1VAOA 3VTEA 2GQTA 3FW9A 4PWCA 1ZXIC 4ZOHB 1W1SA 3HRDC 1N63C 4PVJA 1AHUA 3EJBB 2BVGA 1WVFA 3W8WA 2P4PA 3NS1B 3S1FA 2P3HA 2YVSA 3DQ0A 3RJAA 5FXFA 4PWBA 3ETRB 5HMRA 2QPMA 2Y08A 5L6GA 5FXPA 5I1VA 1E0YA 1N60C 1N62C 1W1QA 2UUUA 3POPA 1HSKA 4DNSA 3AN1A 1SB3B 2PLSA 1FFUC 3S1CA 5HQXA 2VFTA 5FXEA 4HG0A 5L6FA 1FFVC 2OAIA 5G5GB 1N5XA 2QKNA 1W1OA 1FO4A 1QLUA 4BCAA 4JB1A 3HSUA 1VDVA 3S1DA 3DEDA 5AE1A 1V97A 2I0KA 4OALA 4BC9A 3FWAA 1E8HA 5K8EA 3GSYA 3EJDB 2WDWA 5G5HB 2P13A 3EUB3 1WVEA 1AHVA 3NVWB 2VAOA 1MBTA 3C0PA 3FW8A 2W54A 3RJ8A 3W8ZA 2RK5A 2VFUA 2VFSA 4MLAA 4PZFA 1JRPA 3NRZB 1FIQB 4O95A 1F0XA 5FXDA 5ADZA 3D2HA 1DIIA 4PVKA 4JAYA 3LLBA 3PM9A 2IPIA 2UUVA 3TX1A 2O3GA 2BVHA 3AM9A 2GQUA 3LAEA 2Q85A 2NQWA 5AWVA 1W1LA 5I1WA 3NVVB 4EC3A 3W8XA 1WYGA 3SR6B 2Y3SA 5AE2A 2R8DA 2VFRA 3TSJA 2W3SA 3BW7A 1N5WC 4ML8A
chains in the Genus database with same CATH topology
4PYTA 1AHZA 2R2ZA 4PVHA 3I99A 2Y4GA 1W1RA 2VFVA 5HHZA 2W3RA 4BBYA 1T3QC 3AMZA 1DIQA 3NVYB 1DZNA 2W55A 5AE3A 1W1MA 1RM6B 3S1EA 1N61C 2BVFA 3TSHA 3PQBA 4XLOA 3D2JA 2Q4WA 5D79A 2MBRA 2Y3RA 3NVZB 3D2DA 4UD8A 2EXRA 2AXRA 2E3TA 1E8GA 1UXYA 1ZR6A 3JS8A 1QLTA 3B9JB 3KJMA 1W1KA 3FW7A 1MBBA 1I19A 2PLIA 4BC7A 1E8FA 1W1JA 4PVEA 1JROA 1VAOA 3VTEA 2GQTA 3FW9A 4PWCA 1ZXIC 4ZOHB 1W1SA 3HRDC 1N63C 4PVJA 1AHUA 2BVGA 1WVFA 3W8WA 2P4PA 3NS1B 3S1FA 2P3HA 2YVSA 3DQ0A 3RJAA 5FXFA 4PWBA 3ETRB 5HMRA 2QPMA 2Y08A 5L6GA 5FXPA 5I1VA 1E0YA 1N60C 1N62C 1W1QA 2UUUA 3POPA 1HSKA 4DNSA 3AN1A 1SB3B 2PLSA 1FFUC 3S1CA 5HQXA 2VFTA 5FXEA 4HG0A 5L6FA 1FFVC 2OAIA 5G5GB 1N5XA 2QKNA 1W1OA 1FO4A 1QLUA 4BCAA 4JB1A 3HSUA 1VDVA 3S1DA 3DEDA 5AE1A 1V97A 2I0KA 4OALA 4BC9A 3FWAA 1E8HA 5K8EA 3GSYA 2WDWA 5G5HB 2P13A 3EUB3 1WVEA 1AHVA 3NVWB 2VAOA 1MBTA 3C0PA 3FW8A 2W54A 3RJ8A 3W8ZA 2RK5A 2VFUA 2VFSA 4MLAA 4PZFA 1JRPA 3NRZB 1FIQB 4O95A 1F0XA 5FXDA 5ADZA 3D2HA 1DIIA 4PVKA 4JAYA 3LLBA 3PM9A 2IPIA 2UUVA 3TX1A 2O3GA 2BVHA 3AM9A 2GQUA 3LAEA 2Q85A 2NQWA 5AWVA 1W1LA 5I1WA 3NVVB 4EC3A 3W8XA 1WYGA 3SR6B 2Y3SA 5AE2A 2R8DA 2VFRA 3TSJA 2W3SA 3BW7A 1N5WC 4ML8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PYT A;  1AHZ A;  2R2Z A;  4PVH A;  3I99 A;  1W1R A;  2VFV A;  5HHZ A;  2W3R A;  4BBY A;  1T3Q C;  3AMZ A;  1DIQ A;  3NVY B;  1DZN A;  2W55 A;  5AE3 A;  1W1M A;  1RM6 B;  3S1E A;  1N61 C;  2BVF A;  3TSH A;  4XLO A;  3D2J A;  2Q4W A;  5D79 A;  2MBR A;  3NVZ B;  3D2D A;  4UD8 A;  2EXR A;  2AXR A;  2E3T A;  1E8G A;  1UXY A;  1ZR6 A;  3JS8 A;  1QLT A;  3B9J B;  3KJM A;  1W1K A;  3FW7 A;  1MBB A;  1I19 A;  2PLI A;  4BC7 A;  1E8F A;  1W1J A;  4PVE A;  1JRO A;  1VAO A;  3VTE A;  2GQT A;  3FW9 A;  4PWC A;  1ZXI C;  4ZOH B;  1W1S A;  3HRD C;  1N63 C;  4PVJ A;  1AHU A;  2BVG A;  1WVF A;  3W8W A;  2P4P A;  3NS1 B;  3S1F A;  2P3H A;  2YVS A;  3DQ0 A;  5FXF A;  4PWB A;  3ETR B;  5HMR A;  2QPM A;  5FXP A;  1E0Y A;  1N60 C;  1N62 C;  1W1Q A;  1HSK A;  4DNS A;  3AN1 A;  1SB3 B;  2PLS A;  1FFU C;  3S1C A;  5HQX A;  2VFT A;  5FXE A;  4HG0 A;  1FFV C;  2OAI A;  5G5G B;  1N5X A;  2QKN A;  1W1O A;  1FO4 A;  1QLU A;  4BCA A;  4JB1 A;  1VDV A;  3S1D A;  3DED A;  5AE1 A;  1V97 A;  2I0K A;  4OAL A;  4BC9 A;  3FWA A;  1E8H A;  3GSY A;  5G5H B;  2P13 A;  3EUB 3;  1WVE A;  1AHV A;  3NVW B;  2VAO A;  1MBT A;  3C0P A;  3FW8 A;  2W54 A;  3W8Z A;  2RK5 A;  2VFU A;  2VFS A;  4MLA A;  4PZF A;  1JRP A;  3NRZ B;  1FIQ B;  4O95 A;  1F0X A;  5FXD A;  5ADZ A;  3D2H A;  1DII A;  4PVK A;  4JAY A;  3LLB A;  3PM9 A;  3TX1 A;  2O3G A;  2BVH A;  3AM9 A;  2GQU A;  3LAE A;  2Q85 A;  2NQW A;  1W1L A;  3NVV B;  4EC3 A;  3W8X A;  1WYG A;  3SR6 B;  5AE2 A;  2R8D A;  2VFR A;  3TSJ A;  2W3S A;  3BW7 A;  1N5W C;  4ML8 A; 
#chains in the Genus database with same CATH topology
 4PYT A;  1AHZ A;  2R2Z A;  4PVH A;  3I99 A;  2Y4G A;  1W1R A;  2VFV A;  5HHZ A;  2W3R A;  4BBY A;  1T3Q C;  3AMZ A;  1DIQ A;  3NVY B;  1DZN A;  2W55 A;  5AE3 A;  1W1M A;  1RM6 B;  3S1E A;  1N61 C;  2BVF A;  3TSH A;  3PQB A;  4XLO A;  3D2J A;  3EJE B;  2Q4W A;  5D79 A;  2MBR A;  2Y3R A;  3NVZ B;  3D2D A;  4UD8 A;  2EXR A;  2AXR A;  2E3T A;  1E8G A;  1UXY A;  1ZR6 A;  3JS8 A;  1QLT A;  3B9J B;  3KJM A;  1W1K A;  3FW7 A;  1MBB A;  1I19 A;  2PLI A;  4BC7 A;  1E8F A;  1W1J A;  4PVE A;  1JRO A;  1VAO A;  3VTE A;  2GQT A;  3FW9 A;  4PWC A;  1ZXI C;  4ZOH B;  1W1S A;  3HRD C;  1N63 C;  4PVJ A;  1AHU A;  3EJB B;  2BVG A;  1WVF A;  3W8W A;  2P4P A;  3NS1 B;  3S1F A;  2P3H A;  2YVS A;  3DQ0 A;  3RJA A;  5FXF A;  4PWB A;  3ETR B;  5HMR A;  2QPM A;  2Y08 A;  5L6G A;  5FXP A;  5I1V A;  1E0Y A;  1N60 C;  1N62 C;  1W1Q A;  2UUU A;  3POP A;  1HSK A;  4DNS A;  3AN1 A;  1SB3 B;  2PLS A;  1FFU C;  3S1C A;  5HQX A;  2VFT A;  5FXE A;  4HG0 A;  5L6F A;  1FFV C;  2OAI A;  5G5G B;  1N5X A;  2QKN A;  1W1O A;  1FO4 A;  1QLU A;  4BCA A;  4JB1 A;  3HSU A;  1VDV A;  3S1D A;  3DED A;  5AE1 A;  1V97 A;  2I0K A;  4OAL A;  4BC9 A;  3FWA A;  1E8H A;  5K8E A;  3GSY A;  3EJD B;  2WDW A;  5G5H B;  2P13 A;  3EUB 3;  1WVE A;  1AHV A;  3NVW B;  2VAO A;  1MBT A;  3C0P A;  3FW8 A;  2W54 A;  3RJ8 A;  3W8Z A;  2RK5 A;  2VFU A;  2VFS A;  4MLA A;  4PZF A;  1JRP A;  3NRZ B;  1FIQ B;  4O95 A;  1F0X A;  5FXD A;  5ADZ A;  3D2H A;  1DII A;  4PVK A;  4JAY A;  3LLB A;  3PM9 A;  2IPI A;  2UUV A;  3TX1 A;  2O3G A;  2BVH A;  3AM9 A;  2GQU A;  3LAE A;  2Q85 A;  2NQW A;  5AWV A;  1W1L A;  5I1W A;  3NVV B;  4EC3 A;  3W8X A;  1WYG A;  3SR6 B;  2Y3S A;  5AE2 A;  2R8D A;  2VFR A;  3TSJ A;  2W3S A;  3BW7 A;  1N5W C;  4ML8 A; 
#chains in the Genus database with same CATH homology
 4PYT A;  1AHZ A;  2R2Z A;  4PVH A;  3I99 A;  2Y4G A;  1W1R A;  2VFV A;  5HHZ A;  2W3R A;  4BBY A;  1T3Q C;  3AMZ A;  1DIQ A;  3NVY B;  1DZN A;  2W55 A;  5AE3 A;  1W1M A;  1RM6 B;  3S1E A;  1N61 C;  2BVF A;  3TSH A;  3PQB A;  4XLO A;  3D2J A;  2Q4W A;  5D79 A;  2MBR A;  2Y3R A;  3NVZ B;  3D2D A;  4UD8 A;  2EXR A;  2AXR A;  2E3T A;  1E8G A;  1UXY A;  1ZR6 A;  3JS8 A;  1QLT A;  3B9J B;  3KJM A;  1W1K A;  3FW7 A;  1MBB A;  1I19 A;  2PLI A;  4BC7 A;  1E8F A;  1W1J A;  4PVE A;  1JRO A;  1VAO A;  3VTE A;  2GQT A;  3FW9 A;  4PWC A;  1ZXI C;  4ZOH B;  1W1S A;  3HRD C;  1N63 C;  4PVJ A;  1AHU A;  2BVG A;  1WVF A;  3W8W A;  2P4P A;  3NS1 B;  3S1F A;  2P3H A;  2YVS A;  3DQ0 A;  3RJA A;  5FXF A;  4PWB A;  3ETR B;  5HMR A;  2QPM A;  2Y08 A;  5L6G A;  5FXP A;  5I1V A;  1E0Y A;  1N60 C;  1N62 C;  1W1Q A;  2UUU A;  3POP A;  1HSK A;  4DNS A;  3AN1 A;  1SB3 B;  2PLS A;  1FFU C;  3S1C A;  5HQX A;  2VFT A;  5FXE A;  4HG0 A;  5L6F A;  1FFV C;  2OAI A;  5G5G B;  1N5X A;  2QKN A;  1W1O A;  1FO4 A;  1QLU A;  4BCA A;  4JB1 A;  3HSU A;  1VDV A;  3S1D A;  3DED A;  5AE1 A;  1V97 A;  2I0K A;  4OAL A;  4BC9 A;  3FWA A;  1E8H A;  5K8E A;  3GSY A;  2WDW A;  5G5H B;  2P13 A;  3EUB 3;  1WVE A;  1AHV A;  3NVW B;  2VAO A;  1MBT A;  3C0P A;  3FW8 A;  2W54 A;  3RJ8 A;  3W8Z A;  2RK5 A;  2VFU A;  2VFS A;  4MLA A;  4PZF A;  1JRP A;  3NRZ B;  1FIQ B;  4O95 A;  1F0X A;  5FXD A;  5ADZ A;  3D2H A;  1DII A;  4PVK A;  4JAY A;  3LLB A;  3PM9 A;  2IPI A;  2UUV A;  3TX1 A;  2O3G A;  2BVH A;  3AM9 A;  2GQU A;  3LAE A;  2Q85 A;  2NQW A;  5AWV A;  1W1L A;  5I1W A;  3NVV B;  4EC3 A;  3W8X A;  1WYG A;  3SR6 B;  2Y3S A;  5AE2 A;  2R8D A;  2VFR A;  3TSJ A;  2W3S A;  3BW7 A;  1N5W C;  4ML8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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