1AHZA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with 4-(1-heptenyl)phenol
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
total genus 160
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahzA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahzA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahzA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahzA03
4BBYA 1E8GA 4PVHA 2VAOA 1E0YA 3NVYB 1ZR6A 5AE3A 5FXEA 4BCAA 1I19A 3NVWB 4PVJA 1JRPA 4BC9A 1JROA 3AMZA 4ZOHB 3SR6B 4XLOA 3C0PA 5HMRA 2RK5A 2VFUA 1FIQB 3FW9A 4PVEA 3TSHA 2GQUA 4ML8A 1N61C 3S1EA 2QPMA 1AHUA 4JAYA 4O95A 2OAIA 1FFUC 1N63C 3GSYA 2NQWA 2I0KA 3D2HA 1UXYA 3TX1A 1QLUA 3S1CA 3EUB3 3W8XA 5D79A 3D2DA 3S1FA 5AE2A 4EC3A 1ZXIC 3LLBA 5G5GB 4JB1A 1QLTA 1MBBA 1FO4A 4DNSA 1T3QC 5ADZA 1W1JA 3AM9A 1W1SA 2YVSA 3NVZB 2E3TA 2BVFA 2VFVA 2R8DA 1FFVC 3NRZB 3TSJA 1F0XA 3KJMA 4HG0A 4PWBA 2GQTA 3ETRB 1E8FA 5FXDA 5FXPA 1HSKA 2VFTA 2P13A 3DEDA 3JS8A 1AHZA 2Q4WA 1RM6B 5G5HB 2W3RA 2PLIA 1W1RA 4PWCA 2QKNA 1VAOA 1WVFA 1W1MA 1DIQA 1W1KA 2VFSA 4BC7A 3BW7A 3LAEA 1W1OA 3FWAA 1N5XA 3DQ0A 2BVGA 2P3HA 1V97A 2R2ZA 3B9JB 2VFRA 1N60C 1DZNA 4PZFA 3AN1A 2PLSA 2BVHA 3W8ZA 3NVVB 2W54A 2W3SA 2AXRA 1W1LA 5HQXA 2O3GA 4PVKA 4PYTA 1SB3B 3HRDC 3FW8A 3I99A 2P4PA 3PM9A 2MBRA 5FXFA 3S1DA 1WVEA 3W8WA 1MBTA 1E8HA 1VDVA 5AE1A 2EXRA 3NS1B 1N62C 1DIIA 4OALA 5HHZA 3FW7A 1W1QA 1N5WC 4UD8A 3D2JA 3VTEA 1WYGA 2W55A 4MLAA 2Q85A 1AHVA
chains in the Genus database with same CATH superfamily
4BBYA 1E8GA 4PVHA 2VAOA 1E0YA 3NVYB 1ZR6A 3EJDB 5AE3A 5FXEA 4BCAA 1I19A 3NVWB 4PVJA 1JRPA 4BC9A 1JROA 3AMZA 4ZOHB 3SR6B 4XLOA 3C0PA 5HMRA 2RK5A 2VFUA 1FIQB 3FW9A 4PVEA 3TSHA 5I1VA 2GQUA 4ML8A 2Y08A 2Y4GA 1N61C 5L6FA 3S1EA 2QPMA 1AHUA 4JAYA 4O95A 2OAIA 1FFUC 1N63C 3GSYA 2NQWA 5K8EA 2I0KA 3D2HA 1UXYA 3TX1A 1QLUA 3S1CA 3EUB3 3W8XA 5D79A 3D2DA 3S1FA 5AE2A 4EC3A 1ZXIC 3LLBA 3RJAA 5G5GB 4JB1A 1QLTA 1MBBA 1FO4A 4DNSA 2UUUA 1T3QC 5ADZA 1W1JA 3AM9A 1W1SA 2YVSA 3NVZB 2E3TA 2BVFA 2VFVA 2R8DA 3POPA 1FFVC 3NRZB 3TSJA 1F0XA 3KJMA 4HG0A 4PWBA 2GQTA 3ETRB 1E8FA 3EJEB 5FXDA 5FXPA 3PQBA 1HSKA 2VFTA 5I1WA 2P13A 3DEDA 3JS8A 1AHZA 2Q4WA 1RM6B 5G5HB 3EJBB 5L6GA 2W3RA 2Y3SA 2PLIA 2WDWA 1W1RA 4PWCA 2QKNA 1VAOA 1WVFA 1W1MA 1DIQA 1W1KA 2VFSA 4BC7A 3BW7A 3LAEA 1W1OA 3FWAA 1N5XA 3DQ0A 2BVGA 2P3HA 1V97A 2R2ZA 2UUVA 5AWVA 3B9JB 2VFRA 1N60C 1DZNA 4PZFA 3AN1A 2PLSA 2BVHA 3W8ZA 3NVVB 2W54A 2W3SA 3HSUA 2AXRA 1W1LA 5HQXA 2O3GA 4PVKA 4PYTA 1SB3B 3HRDC 3FW8A 3I99A 2P4PA 3PM9A 2MBRA 5FXFA 3S1DA 1WVEA 3W8WA 2IPIA 1MBTA 1E8HA 2Y3RA 1VDVA 5AE1A 2EXRA 3NS1B 1N62C 1DIIA 4OALA 5HHZA 3FW7A 1W1QA 1N5WC 4UD8A 3D2JA 3VTEA 1WYGA 2W55A 4MLAA 2Q85A 3RJ8A 1AHVA
chains in the Genus database with same CATH topology
4BBYA 1E8GA 4PVHA 2VAOA 1E0YA 3NVYB 1ZR6A 5AE3A 5FXEA 4BCAA 1I19A 3NVWB 4PVJA 1JRPA 4BC9A 1JROA 3AMZA 4ZOHB 3SR6B 4XLOA 3C0PA 5HMRA 2RK5A 2VFUA 1FIQB 3FW9A 4PVEA 3TSHA 5I1VA 2GQUA 4ML8A 2Y08A 2Y4GA 1N61C 5L6FA 3S1EA 2QPMA 1AHUA 4JAYA 4O95A 2OAIA 1FFUC 1N63C 3GSYA 2NQWA 5K8EA 2I0KA 3D2HA 1UXYA 3TX1A 1QLUA 3S1CA 3EUB3 3W8XA 5D79A 3D2DA 3S1FA 5AE2A 4EC3A 1ZXIC 3LLBA 3RJAA 5G5GB 4JB1A 1QLTA 1MBBA 1FO4A 4DNSA 2UUUA 1T3QC 5ADZA 1W1JA 3AM9A 1W1SA 2YVSA 3NVZB 2E3TA 2BVFA 2VFVA 2R8DA 3POPA 1FFVC 3NRZB 3TSJA 1F0XA 3KJMA 4HG0A 4PWBA 2GQTA 3ETRB 1E8FA 5FXDA 5FXPA 3PQBA 1HSKA 2VFTA 5I1WA 2P13A 3DEDA 3JS8A 1AHZA 2Q4WA 1RM6B 5G5HB 5L6GA 2W3RA 2Y3SA 2PLIA 2WDWA 1W1RA 4PWCA 2QKNA 1VAOA 1WVFA 1W1MA 1DIQA 1W1KA 2VFSA 4BC7A 3BW7A 3LAEA 1W1OA 3FWAA 1N5XA 3DQ0A 2BVGA 2P3HA 1V97A 2R2ZA 2UUVA 5AWVA 3B9JB 2VFRA 1N60C 1DZNA 4PZFA 3AN1A 2PLSA 2BVHA 3W8ZA 3NVVB 2W54A 2W3SA 3HSUA 2AXRA 1W1LA 5HQXA 2O3GA 4PVKA 4PYTA 1SB3B 3HRDC 3FW8A 3I99A 2P4PA 3PM9A 2MBRA 5FXFA 3S1DA 1WVEA 3W8WA 2IPIA 1MBTA 1E8HA 2Y3RA 1VDVA 5AE1A 2EXRA 3NS1B 1N62C 1DIIA 4OALA 5HHZA 3FW7A 1W1QA 1N5WC 4UD8A 3D2JA 3VTEA 1WYGA 2W55A 4MLAA 2Q85A 3RJ8A 1AHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBY A;  1E8G A;  4PVH A;  2VAO A;  1E0Y A;  3NVY B;  1ZR6 A;  5AE3 A;  5FXE A;  4BCA A;  1I19 A;  3NVW B;  4PVJ A;  1JRP A;  4BC9 A;  1JRO A;  3AMZ A;  4ZOH B;  3SR6 B;  4XLO A;  3C0P A;  5HMR A;  2RK5 A;  2VFU A;  1FIQ B;  3FW9 A;  4PVE A;  3TSH A;  2GQU A;  4ML8 A;  1N61 C;  3S1E A;  2QPM A;  1AHU A;  4JAY A;  4O95 A;  2OAI A;  1FFU C;  1N63 C;  3GSY A;  2NQW A;  2I0K A;  3D2H A;  1UXY A;  3TX1 A;  1QLU A;  3S1C A;  3EUB 3;  3W8X A;  5D79 A;  3D2D A;  3S1F A;  5AE2 A;  4EC3 A;  1ZXI C;  3LLB A;  5G5G B;  4JB1 A;  1QLT A;  1MBB A;  1FO4 A;  4DNS A;  1T3Q C;  5ADZ A;  1W1J A;  3AM9 A;  1W1S A;  2YVS A;  3NVZ B;  2E3T A;  2BVF A;  2VFV A;  2R8D A;  1FFV C;  3NRZ B;  3TSJ A;  1F0X A;  3KJM A;  4HG0 A;  4PWB A;  2GQT A;  3ETR B;  1E8F A;  5FXD A;  5FXP A;  1HSK A;  2VFT A;  2P13 A;  3DED A;  3JS8 A;  1AHZ A;  2Q4W A;  1RM6 B;  5G5H B;  2W3R A;  2PLI A;  1W1R A;  4PWC A;  2QKN A;  1VAO A;  1WVF A;  1W1M A;  1DIQ A;  1W1K A;  2VFS A;  4BC7 A;  3BW7 A;  3LAE A;  1W1O A;  3FWA A;  1N5X A;  3DQ0 A;  2BVG A;  2P3H A;  1V97 A;  2R2Z A;  3B9J B;  2VFR A;  1N60 C;  1DZN A;  4PZF A;  3AN1 A;  2PLS A;  2BVH A;  3W8Z A;  3NVV B;  2W54 A;  2W3S A;  2AXR A;  1W1L A;  5HQX A;  2O3G A;  4PVK A;  4PYT A;  1SB3 B;  3HRD C;  3FW8 A;  3I99 A;  2P4P A;  3PM9 A;  2MBR A;  5FXF A;  3S1D A;  1WVE A;  3W8W A;  1MBT A;  1E8H A;  1VDV A;  5AE1 A;  2EXR A;  3NS1 B;  1N62 C;  1DII A;  4OAL A;  5HHZ A;  3FW7 A;  1W1Q A;  1N5W C;  4UD8 A;  3D2J A;  3VTE A;  1WYG A;  2W55 A;  4MLA A;  2Q85 A;  1AHV A; 
#chains in the Genus database with same CATH topology
 4BBY A;  1E8G A;  4PVH A;  2VAO A;  1E0Y A;  3NVY B;  1ZR6 A;  3EJD B;  5AE3 A;  5FXE A;  4BCA A;  1I19 A;  3NVW B;  4PVJ A;  1JRP A;  4BC9 A;  1JRO A;  3AMZ A;  4ZOH B;  3SR6 B;  4XLO A;  3C0P A;  5HMR A;  2RK5 A;  2VFU A;  1FIQ B;  3FW9 A;  4PVE A;  3TSH A;  5I1V A;  2GQU A;  4ML8 A;  2Y08 A;  2Y4G A;  1N61 C;  5L6F A;  3S1E A;  2QPM A;  1AHU A;  4JAY A;  4O95 A;  2OAI A;  1FFU C;  1N63 C;  3GSY A;  2NQW A;  5K8E A;  2I0K A;  3D2H A;  1UXY A;  3TX1 A;  1QLU A;  3S1C A;  3EUB 3;  3W8X A;  5D79 A;  3D2D A;  3S1F A;  5AE2 A;  4EC3 A;  1ZXI C;  3LLB A;  3RJA A;  5G5G B;  4JB1 A;  1QLT A;  1MBB A;  1FO4 A;  4DNS A;  2UUU A;  1T3Q C;  5ADZ A;  1W1J A;  3AM9 A;  1W1S A;  2YVS A;  3NVZ B;  2E3T A;  2BVF A;  2VFV A;  2R8D A;  3POP A;  1FFV C;  3NRZ B;  3TSJ A;  1F0X A;  3KJM A;  4HG0 A;  4PWB A;  2GQT A;  3ETR B;  1E8F A;  3EJE B;  5FXD A;  5FXP A;  3PQB A;  1HSK A;  2VFT A;  5I1W A;  2P13 A;  3DED A;  3JS8 A;  1AHZ A;  2Q4W A;  1RM6 B;  5G5H B;  3EJB B;  5L6G A;  2W3R A;  2Y3S A;  2PLI A;  2WDW A;  1W1R A;  4PWC A;  2QKN A;  1VAO A;  1WVF A;  1W1M A;  1DIQ A;  1W1K A;  2VFS A;  4BC7 A;  3BW7 A;  3LAE A;  1W1O A;  3FWA A;  1N5X A;  3DQ0 A;  2BVG A;  2P3H A;  1V97 A;  2R2Z A;  2UUV A;  5AWV A;  3B9J B;  2VFR A;  1N60 C;  1DZN A;  4PZF A;  3AN1 A;  2PLS A;  2BVH A;  3W8Z A;  3NVV B;  2W54 A;  2W3S A;  3HSU A;  2AXR A;  1W1L A;  5HQX A;  2O3G A;  4PVK A;  4PYT A;  1SB3 B;  3HRD C;  3FW8 A;  3I99 A;  2P4P A;  3PM9 A;  2MBR A;  5FXF A;  3S1D A;  1WVE A;  3W8W A;  2IPI A;  1MBT A;  1E8H A;  2Y3R A;  1VDV A;  5AE1 A;  2EXR A;  3NS1 B;  1N62 C;  1DII A;  4OAL A;  5HHZ A;  3FW7 A;  1W1Q A;  1N5W C;  4UD8 A;  3D2J A;  3VTE A;  1WYG A;  2W55 A;  4MLA A;  2Q85 A;  3RJ8 A;  1AHV A; 
#chains in the Genus database with same CATH homology
 4BBY A;  1E8G A;  4PVH A;  2VAO A;  1E0Y A;  3NVY B;  1ZR6 A;  5AE3 A;  5FXE A;  4BCA A;  1I19 A;  3NVW B;  4PVJ A;  1JRP A;  4BC9 A;  1JRO A;  3AMZ A;  4ZOH B;  3SR6 B;  4XLO A;  3C0P A;  5HMR A;  2RK5 A;  2VFU A;  1FIQ B;  3FW9 A;  4PVE A;  3TSH A;  5I1V A;  2GQU A;  4ML8 A;  2Y08 A;  2Y4G A;  1N61 C;  5L6F A;  3S1E A;  2QPM A;  1AHU A;  4JAY A;  4O95 A;  2OAI A;  1FFU C;  1N63 C;  3GSY A;  2NQW A;  5K8E A;  2I0K A;  3D2H A;  1UXY A;  3TX1 A;  1QLU A;  3S1C A;  3EUB 3;  3W8X A;  5D79 A;  3D2D A;  3S1F A;  5AE2 A;  4EC3 A;  1ZXI C;  3LLB A;  3RJA A;  5G5G B;  4JB1 A;  1QLT A;  1MBB A;  1FO4 A;  4DNS A;  2UUU A;  1T3Q C;  5ADZ A;  1W1J A;  3AM9 A;  1W1S A;  2YVS A;  3NVZ B;  2E3T A;  2BVF A;  2VFV A;  2R8D A;  3POP A;  1FFV C;  3NRZ B;  3TSJ A;  1F0X A;  3KJM A;  4HG0 A;  4PWB A;  2GQT A;  3ETR B;  1E8F A;  5FXD A;  5FXP A;  3PQB A;  1HSK A;  2VFT A;  5I1W A;  2P13 A;  3DED A;  3JS8 A;  1AHZ A;  2Q4W A;  1RM6 B;  5G5H B;  5L6G A;  2W3R A;  2Y3S A;  2PLI A;  2WDW A;  1W1R A;  4PWC A;  2QKN A;  1VAO A;  1WVF A;  1W1M A;  1DIQ A;  1W1K A;  2VFS A;  4BC7 A;  3BW7 A;  3LAE A;  1W1O A;  3FWA A;  1N5X A;  3DQ0 A;  2BVG A;  2P3H A;  1V97 A;  2R2Z A;  2UUV A;  5AWV A;  3B9J B;  2VFR A;  1N60 C;  1DZN A;  4PZF A;  3AN1 A;  2PLS A;  2BVH A;  3W8Z A;  3NVV B;  2W54 A;  2W3S A;  3HSU A;  2AXR A;  1W1L A;  5HQX A;  2O3G A;  4PVK A;  4PYT A;  1SB3 B;  3HRD C;  3FW8 A;  3I99 A;  2P4P A;  3PM9 A;  2MBR A;  5FXF A;  3S1D A;  1WVE A;  3W8W A;  2IPI A;  1MBT A;  1E8H A;  2Y3R A;  1VDV A;  5AE1 A;  2EXR A;  3NS1 B;  1N62 C;  1DII A;  4OAL A;  5HHZ A;  3FW7 A;  1W1Q A;  1N5W C;  4UD8 A;  3D2J A;  3VTE A;  1WYG A;  2W55 A;  4MLA A;  2Q85 A;  3RJ8 A;  1AHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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