1AHZA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with 4-(1-heptenyl)phenol
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
555
structure length
555
Chain Sequence
b'EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
molecule tags Flavoenzyme
total genus 160
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahzA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahzA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahzA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahzA03
4JB1A 1VDVA 4BC7A 3TSJA 2Q85A 2BVFA 2W3SA 3AN1A 5G5GB 5FXDA 4PVHA 3NVVB 5G5HB 2W54A 1V97A 2EXRA 1N60C 3NS1B 4BBYA 4PWCA 4DNSA 1W1MA 5HHZA 2R8DA 4ML8A 3W8ZA 2QKNA 2GQTA 3S1CA 3FWAA 1DIQA 3EUB3 4PVEA 1N5WC 2NQWA 1W1RA 3DQ0A 1W1JA 3I99A 5AE3A 1AHZA 2VFSA 3AMZA 3NVZB 2R2ZA 1MBTA 2E3TA 5AE2A 2VFVA 2VFUA 1N5XA 3ETRB 1E8FA 1T3QC 3BW7A 3FW9A 3C0PA 4OALA 3NVWB 1AHUA 1MBBA 3S1EA 1ZXIC 3FW7A 1E8HA 1HSKA 2W55A 2GQUA 1QLUA 1JRPA 1WVFA 5ADZA 3NRZB 1ZR6A 2VFRA 1WYGA 3NVYB 1QLTA 3VTEA 1FFUC 2RK5A 1W1OA 2PLSA 3JS8A 3TSHA 3LLBA 1FFVC 1N61C 1DIIA 4O95A 3S1DA 1E0YA 1W1SA 4PWBA 4PZFA 2VFTA 2Q4WA 2YVSA 3DEDA 3W8XA 1E8GA 1SB3B 1W1QA 2PLIA 3TX1A 1W1LA 3W8WA 1N62C 3SR6B 1VAOA 4UD8A 4PVKA 4PVJA 1I19A 3PM9A 5AE1A 5FXPA 4ZOHB 1N63C 4JAYA 1WVEA 2QPMA 3B9JB 4BC9A 5FXEA 5FXFA 2AXRA 4PYTA 4BCAA 4HG0A 3D2DA 2O3GA 5HMRA 2VAOA 3KJMA 1DZNA 1AHVA 3D2HA 1W1KA 2BVHA 1RM6B 2BVGA 2MBRA 2P13A 2W3RA 1FO4A 1F0XA 3HRDC 2I0KA 2OAIA 1UXYA 1FIQB 2P4PA 5HQXA 3S1FA 3GSYA 2P3HA 3D2JA 4MLAA 5D79A 3FW8A 1JROA 4EC3A 4XLOA 3AM9A 3LAEA
chains in the Genus database with same CATH superfamily
4JB1A 1VDVA 4BC7A 3TSJA 2Q85A 2BVFA 2W3SA 3AN1A 5G5GB 5FXDA 4PVHA 3NVVB 5G5HB 2W54A 1V97A 2EXRA 1N60C 3NS1B 4BBYA 4PWCA 4DNSA 2UUVA 1W1MA 5HHZA 2R8DA 4ML8A 3W8ZA 2WDWA 2QKNA 3RJ8A 2GQTA 3POPA 3S1CA 3FWAA 1DIQA 3EUB3 4PVEA 1N5WC 3EJBB 1W1RA 2NQWA 2Y3RA 3RJAA 3DQ0A 1W1JA 3I99A 5AE3A 2Y3SA 1AHZA 2VFSA 3AMZA 3NVZB 2R2ZA 1MBTA 2E3TA 5AE2A 5I1VA 2VFVA 2VFUA 1N5XA 3EJDB 3ETRB 1E8FA 1T3QC 3BW7A 3FW9A 3C0PA 4OALA 3NVWB 1AHUA 1MBBA 3S1EA 1ZXIC 3FW7A 3PQBA 1E8HA 1HSKA 2W55A 2GQUA 1QLUA 1JRPA 1WVFA 5ADZA 3NRZB 1ZR6A 2VFRA 1WYGA 3NVYB 2UUUA 1QLTA 3VTEA 1FFUC 2RK5A 1W1OA 2PLSA 3JS8A 5L6FA 3TSHA 3LLBA 1FFVC 1N61C 1DIIA 4O95A 3S1DA 1E0YA 1W1SA 4PWBA 4PZFA 2VFTA 2Q4WA 2YVSA 2Y08A 5L6GA 3DEDA 5K8EA 3W8XA 1E8GA 1SB3B 1W1QA 2PLIA 3TX1A 1W1LA 3W8WA 1N62C 3SR6B 1VAOA 4UD8A 4PVKA 4PVJA 1I19A 3PM9A 5AE1A 5FXPA 4ZOHB 1N63C 2IPIA 4JAYA 3HSUA 1WVEA 3EJEB 2QPMA 3B9JB 4BC9A 5FXEA 5FXFA 2AXRA 4PYTA 4BCAA 4HG0A 3D2DA 2O3GA 5HMRA 2VAOA 3KJMA 1DZNA 1AHVA 3D2HA 1W1KA 5AWVA 2BVHA 1RM6B 2BVGA 2MBRA 2P13A 2W3RA 1FO4A 1F0XA 3HRDC 2I0KA 5I1WA 2OAIA 1UXYA 1FIQB 2P4PA 5HQXA 3S1FA 3GSYA 2P3HA 3D2JA 4MLAA 5D79A 3FW8A 1JROA 4EC3A 4XLOA 3AM9A 2Y4GA 3LAEA
chains in the Genus database with same CATH topology
4JB1A 1VDVA 4BC7A 3TSJA 2Q85A 2BVFA 2W3SA 3AN1A 5G5GB 5FXDA 4PVHA 3NVVB 5G5HB 2W54A 1V97A 2EXRA 1N60C 3NS1B 4BBYA 4PWCA 4DNSA 2UUVA 1W1MA 5HHZA 2R8DA 4ML8A 3W8ZA 2WDWA 2QKNA 3RJ8A 2GQTA 3POPA 3S1CA 3FWAA 1DIQA 3EUB3 4PVEA 1N5WC 2NQWA 1W1RA 2Y3RA 3RJAA 3DQ0A 1W1JA 3I99A 5AE3A 2Y3SA 1AHZA 2VFSA 3AMZA 3NVZB 2R2ZA 1MBTA 2E3TA 5AE2A 5I1VA 2VFVA 2VFUA 1N5XA 3ETRB 1E8FA 1T3QC 3BW7A 3FW9A 3C0PA 4OALA 3NVWB 1AHUA 1MBBA 3S1EA 1ZXIC 3FW7A 3PQBA 1E8HA 1HSKA 2W55A 2GQUA 1QLUA 1JRPA 1WVFA 5ADZA 3NRZB 1ZR6A 2VFRA 1WYGA 2UUUA 3NVYB 1QLTA 3VTEA 1FFUC 2RK5A 1W1OA 2PLSA 3JS8A 5L6FA 3TSHA 3LLBA 1FFVC 1N61C 1DIIA 4O95A 3S1DA 1E0YA 1W1SA 4PWBA 4PZFA 2VFTA 2Q4WA 2YVSA 2Y08A 5L6GA 3DEDA 5K8EA 3W8XA 1E8GA 1SB3B 1W1QA 2PLIA 3TX1A 1W1LA 3W8WA 1N62C 3SR6B 1VAOA 4UD8A 4PVKA 4PVJA 1I19A 3PM9A 5AE1A 5FXPA 4ZOHB 1N63C 2IPIA 4JAYA 3HSUA 1WVEA 2QPMA 3B9JB 4BC9A 5FXEA 5FXFA 2AXRA 4PYTA 4BCAA 4HG0A 3D2DA 2O3GA 5HMRA 2VAOA 3KJMA 1DZNA 1AHVA 3D2HA 1W1KA 5AWVA 2BVHA 1RM6B 2BVGA 2MBRA 2P13A 2W3RA 1FO4A 1F0XA 3HRDC 2I0KA 5I1WA 2OAIA 1UXYA 1FIQB 2P4PA 5HQXA 3S1FA 3GSYA 2P3HA 3D2JA 4MLAA 5D79A 3FW8A 1JROA 4EC3A 4XLOA 3AM9A 2Y4GA 3LAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JB1 A;  1VDV A;  4BC7 A;  3TSJ A;  2Q85 A;  2BVF A;  2W3S A;  3AN1 A;  5G5G B;  5FXD A;  4PVH A;  3NVV B;  5G5H B;  2W54 A;  1V97 A;  2EXR A;  1N60 C;  3NS1 B;  4BBY A;  4PWC A;  4DNS A;  1W1M A;  5HHZ A;  2R8D A;  4ML8 A;  3W8Z A;  2QKN A;  2GQT A;  3S1C A;  3FWA A;  1DIQ A;  3EUB 3;  4PVE A;  1N5W C;  2NQW A;  1W1R A;  3DQ0 A;  1W1J A;  3I99 A;  5AE3 A;  1AHZ A;  2VFS A;  3AMZ A;  3NVZ B;  2R2Z A;  1MBT A;  2E3T A;  5AE2 A;  2VFV A;  2VFU A;  1N5X A;  3ETR B;  1E8F A;  1T3Q C;  3BW7 A;  3FW9 A;  3C0P A;  4OAL A;  3NVW B;  1AHU A;  1MBB A;  3S1E A;  1ZXI C;  3FW7 A;  1E8H A;  1HSK A;  2W55 A;  2GQU A;  1QLU A;  1JRP A;  1WVF A;  5ADZ A;  3NRZ B;  1ZR6 A;  2VFR A;  1WYG A;  3NVY B;  1QLT A;  3VTE A;  1FFU C;  2RK5 A;  1W1O A;  2PLS A;  3JS8 A;  3TSH A;  3LLB A;  1FFV C;  1N61 C;  1DII A;  4O95 A;  3S1D A;  1E0Y A;  1W1S A;  4PWB A;  4PZF A;  2VFT A;  2Q4W A;  2YVS A;  3DED A;  3W8X A;  1E8G A;  1SB3 B;  1W1Q A;  2PLI A;  3TX1 A;  1W1L A;  3W8W A;  1N62 C;  3SR6 B;  1VAO A;  4UD8 A;  4PVK A;  4PVJ A;  1I19 A;  3PM9 A;  5AE1 A;  5FXP A;  4ZOH B;  1N63 C;  4JAY A;  1WVE A;  2QPM A;  3B9J B;  4BC9 A;  5FXE A;  5FXF A;  2AXR A;  4PYT A;  4BCA A;  4HG0 A;  3D2D A;  2O3G A;  5HMR A;  2VAO A;  3KJM A;  1DZN A;  1AHV A;  3D2H A;  1W1K A;  2BVH A;  1RM6 B;  2BVG A;  2MBR A;  2P13 A;  2W3R A;  1FO4 A;  1F0X A;  3HRD C;  2I0K A;  2OAI A;  1UXY A;  1FIQ B;  2P4P A;  5HQX A;  3S1F A;  3GSY A;  2P3H A;  3D2J A;  4MLA A;  5D79 A;  3FW8 A;  1JRO A;  4EC3 A;  4XLO A;  3AM9 A;  3LAE A; 
#chains in the Genus database with same CATH topology
 4JB1 A;  1VDV A;  4BC7 A;  3TSJ A;  2Q85 A;  2BVF A;  2W3S A;  3AN1 A;  5G5G B;  5FXD A;  4PVH A;  3NVV B;  5G5H B;  2W54 A;  1V97 A;  2EXR A;  1N60 C;  3NS1 B;  4BBY A;  4PWC A;  4DNS A;  2UUV A;  1W1M A;  5HHZ A;  2R8D A;  4ML8 A;  3W8Z A;  2WDW A;  2QKN A;  3RJ8 A;  2GQT A;  3POP A;  3S1C A;  3FWA A;  1DIQ A;  3EUB 3;  4PVE A;  1N5W C;  3EJB B;  1W1R A;  2NQW A;  2Y3R A;  3RJA A;  3DQ0 A;  1W1J A;  3I99 A;  5AE3 A;  2Y3S A;  1AHZ A;  2VFS A;  3AMZ A;  3NVZ B;  2R2Z A;  1MBT A;  2E3T A;  5AE2 A;  5I1V A;  2VFV A;  2VFU A;  1N5X A;  3EJD B;  3ETR B;  1E8F A;  1T3Q C;  3BW7 A;  3FW9 A;  3C0P A;  4OAL A;  3NVW B;  1AHU A;  1MBB A;  3S1E A;  1ZXI C;  3FW7 A;  3PQB A;  1E8H A;  1HSK A;  2W55 A;  2GQU A;  1QLU A;  1JRP A;  1WVF A;  5ADZ A;  3NRZ B;  1ZR6 A;  2VFR A;  1WYG A;  3NVY B;  2UUU A;  1QLT A;  3VTE A;  1FFU C;  2RK5 A;  1W1O A;  2PLS A;  3JS8 A;  5L6F A;  3TSH A;  3LLB A;  1FFV C;  1N61 C;  1DII A;  4O95 A;  3S1D A;  1E0Y A;  1W1S A;  4PWB A;  4PZF A;  2VFT A;  2Q4W A;  2YVS A;  2Y08 A;  5L6G A;  3DED A;  5K8E A;  3W8X A;  1E8G A;  1SB3 B;  1W1Q A;  2PLI A;  3TX1 A;  1W1L A;  3W8W A;  1N62 C;  3SR6 B;  1VAO A;  4UD8 A;  4PVK A;  4PVJ A;  1I19 A;  3PM9 A;  5AE1 A;  5FXP A;  4ZOH B;  1N63 C;  2IPI A;  4JAY A;  3HSU A;  1WVE A;  3EJE B;  2QPM A;  3B9J B;  4BC9 A;  5FXE A;  5FXF A;  2AXR A;  4PYT A;  4BCA A;  4HG0 A;  3D2D A;  2O3G A;  5HMR A;  2VAO A;  3KJM A;  1DZN A;  1AHV A;  3D2H A;  1W1K A;  5AWV A;  2BVH A;  1RM6 B;  2BVG A;  2MBR A;  2P13 A;  2W3R A;  1FO4 A;  1F0X A;  3HRD C;  2I0K A;  5I1W A;  2OAI A;  1UXY A;  1FIQ B;  2P4P A;  5HQX A;  3S1F A;  3GSY A;  2P3H A;  3D2J A;  4MLA A;  5D79 A;  3FW8 A;  1JRO A;  4EC3 A;  4XLO A;  3AM9 A;  2Y4G A;  3LAE A; 
#chains in the Genus database with same CATH homology
 4JB1 A;  1VDV A;  4BC7 A;  3TSJ A;  2Q85 A;  2BVF A;  2W3S A;  3AN1 A;  5G5G B;  5FXD A;  4PVH A;  3NVV B;  5G5H B;  2W54 A;  1V97 A;  2EXR A;  1N60 C;  3NS1 B;  4BBY A;  4PWC A;  4DNS A;  2UUV A;  1W1M A;  5HHZ A;  2R8D A;  4ML8 A;  3W8Z A;  2WDW A;  2QKN A;  3RJ8 A;  2GQT A;  3POP A;  3S1C A;  3FWA A;  1DIQ A;  3EUB 3;  4PVE A;  1N5W C;  2NQW A;  1W1R A;  2Y3R A;  3RJA A;  3DQ0 A;  1W1J A;  3I99 A;  5AE3 A;  2Y3S A;  1AHZ A;  2VFS A;  3AMZ A;  3NVZ B;  2R2Z A;  1MBT A;  2E3T A;  5AE2 A;  5I1V A;  2VFV A;  2VFU A;  1N5X A;  3ETR B;  1E8F A;  1T3Q C;  3BW7 A;  3FW9 A;  3C0P A;  4OAL A;  3NVW B;  1AHU A;  1MBB A;  3S1E A;  1ZXI C;  3FW7 A;  3PQB A;  1E8H A;  1HSK A;  2W55 A;  2GQU A;  1QLU A;  1JRP A;  1WVF A;  5ADZ A;  3NRZ B;  1ZR6 A;  2VFR A;  1WYG A;  2UUU A;  3NVY B;  1QLT A;  3VTE A;  1FFU C;  2RK5 A;  1W1O A;  2PLS A;  3JS8 A;  5L6F A;  3TSH A;  3LLB A;  1FFV C;  1N61 C;  1DII A;  4O95 A;  3S1D A;  1E0Y A;  1W1S A;  4PWB A;  4PZF A;  2VFT A;  2Q4W A;  2YVS A;  2Y08 A;  5L6G A;  3DED A;  5K8E A;  3W8X A;  1E8G A;  1SB3 B;  1W1Q A;  2PLI A;  3TX1 A;  1W1L A;  3W8W A;  1N62 C;  3SR6 B;  1VAO A;  4UD8 A;  4PVK A;  4PVJ A;  1I19 A;  3PM9 A;  5AE1 A;  5FXP A;  4ZOH B;  1N63 C;  2IPI A;  4JAY A;  3HSU A;  1WVE A;  2QPM A;  3B9J B;  4BC9 A;  5FXE A;  5FXF A;  2AXR A;  4PYT A;  4BCA A;  4HG0 A;  3D2D A;  2O3G A;  5HMR A;  2VAO A;  3KJM A;  1DZN A;  1AHV A;  3D2H A;  1W1K A;  5AWV A;  2BVH A;  1RM6 B;  2BVG A;  2MBR A;  2P13 A;  2W3R A;  1FO4 A;  1F0X A;  3HRD C;  2I0K A;  5I1W A;  2OAI A;  1UXY A;  1FIQ B;  2P4P A;  5HQX A;  3S1F A;  3GSY A;  2P3H A;  3D2J A;  4MLA A;  5D79 A;  3FW8 A;  1JRO A;  4EC3 A;  4XLO A;  3AM9 A;  2Y4G A;  3LAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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