1AHZA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with 4-(1-heptenyl)phenol
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
molecule tags Flavoenzyme
total genus 160
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahzA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahzA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahzA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahzA03
1RM6B 2NQWA 3LAEA 3PM9A 3FW7A 4XLOA 2W3SA 5HMRA 3DEDA 2O3GA 2BVGA 3S1DA 3BW7A 2EXRA 3SR6B 1E8FA 2R8DA 5AE2A 1V97A 3AMZA 3NVYB 5AE1A 3FW9A 3HRDC 1N63C 3VTEA 4ZOHB 2Q85A 1W1LA 2BVHA 1AHVA 1E8HA 1FFVC 1N62C 1MBBA 3TSHA 2GQTA 2W55A 3DQ0A 4PYTA 1JRPA 3FW8A 3LLBA 1W1KA 2AXRA 2PLIA 3S1FA 1AHZA 1VAOA 5FXPA 3C0PA 2RK5A 4PWCA 1W1OA 2BVFA 1DIIA 1DZNA 1QLTA 1WVEA 3AM9A 1ZXIC 2I0KA 2W3RA 1SB3B 4O95A 1N5XA 1W1SA 3I99A 2VFRA 3FWAA 2R2ZA 5FXDA 2VFVA 2W54A 3EUB3 4BCAA 3NVZB 5HHZA 1W1JA 4HG0A 2VFTA 3D2DA 4UD8A 1F0XA 4JAYA 1QLUA 1W1RA 1E0YA 1HSKA 4PWBA 5G5GB 1T3QC 1W1QA 4ML8A 3D2JA 2GQUA 1WVFA 1I19A 1UXYA 5ADZA 3W8XA 5FXEA 1N5WC 3NVVB 1AHUA 3TX1A 2P3HA 1JROA 3S1CA 2QKNA 4MLAA 2E3TA 3GSYA 2VFUA 1MBTA 3B9JB 4OALA 1DIQA 4BC7A 4BC9A 4DNSA 5D79A 4EC3A 4PVHA 2Q4WA 1FIQB 2P4PA 3S1EA 5AE3A 3TSJA 1W1MA 2PLSA 2VAOA 5G5HB 4PZFA 2YVSA 4BBYA 1N60C 1WYGA 1E8GA 1FO4A 4PVKA 2OAIA 4JB1A 1FFUC 5HQXA 2P13A 3KJMA 2VFSA 3AN1A 3JS8A 3NS1B 4PVJA 1ZR6A 3W8ZA 2QPMA 1N61C 4PVEA 5FXFA 3ETRB 1VDVA 2MBRA 3D2HA 3NRZB 3NVWB 3W8WA
chains in the Genus database with same CATH superfamily
1RM6B 2NQWA 3LAEA 3PM9A 3FW7A 4XLOA 2W3SA 5HMRA 3DEDA 2O3GA 2BVGA 3S1DA 5I1WA 3BW7A 2EXRA 3SR6B 1E8FA 2R8DA 5AE2A 1V97A 3AMZA 3NVYB 5AE1A 3FW9A 3HRDC 1N63C 3VTEA 4ZOHB 2Q85A 5L6GA 1W1LA 2IPIA 2BVHA 1AHVA 1E8HA 1FFVC 1N62C 1MBBA 3TSHA 2Y3SA 2GQTA 2W55A 2UUUA 3DQ0A 5I1VA 4PYTA 1JRPA 3FW8A 5AWVA 3LLBA 1W1KA 2AXRA 2PLIA 3S1FA 1AHZA 1VAOA 5FXPA 3C0PA 2RK5A 4PWCA 1W1OA 2BVFA 1DIIA 5K8EA 1DZNA 1QLTA 1WVEA 2Y3RA 3AM9A 1ZXIC 2I0KA 2W3RA 1SB3B 4O95A 1N5XA 2Y4GA 1W1SA 3I99A 2VFRA 3FWAA 2Y08A 2R2ZA 5FXDA 2VFVA 2W54A 3EUB3 4BCAA 3NVZB 5HHZA 1W1JA 4HG0A 2VFTA 3D2DA 4UD8A 1F0XA 4JAYA 1QLUA 1W1RA 1E0YA 1HSKA 4PWBA 5G5GB 3PQBA 1T3QC 1W1QA 5L6FA 4ML8A 3D2JA 2GQUA 1WVFA 1I19A 3HSUA 1UXYA 5ADZA 3W8XA 5FXEA 1N5WC 3EJBB 3NVVB 1AHUA 3TX1A 2P3HA 1JROA 3S1CA 2QKNA 4MLAA 3EJEB 2E3TA 3GSYA 2VFUA 1MBTA 3B9JB 4OALA 1DIQA 4BC7A 4BC9A 4DNSA 3POPA 5D79A 4EC3A 4PVHA 2Q4WA 1FIQB 2P4PA 3S1EA 5AE3A 3TSJA 3EJDB 1W1MA 2PLSA 2VAOA 5G5HB 4PZFA 2YVSA 4BBYA 1N60C 1WYGA 3RJ8A 1E8GA 2UUVA 1FO4A 4PVKA 2OAIA 4JB1A 1FFUC 5HQXA 2P13A 3RJAA 2WDWA 3KJMA 2VFSA 3AN1A 3JS8A 3NS1B 4PVJA 1ZR6A 3W8ZA 2QPMA 1N61C 4PVEA 5FXFA 3ETRB 1VDVA 2MBRA 3D2HA 3NRZB 3NVWB 3W8WA
chains in the Genus database with same CATH topology
1RM6B 2NQWA 3LAEA 3PM9A 3FW7A 4XLOA 2W3SA 5HMRA 3DEDA 2O3GA 2BVGA 3S1DA 5I1WA 3BW7A 2EXRA 3SR6B 1E8FA 2R8DA 5AE2A 1V97A 3AMZA 3NVYB 5AE1A 3FW9A 3HRDC 1N63C 3VTEA 4ZOHB 2Q85A 5L6GA 1W1LA 2IPIA 2BVHA 1AHVA 1E8HA 1FFVC 1N62C 1MBBA 3TSHA 2Y3SA 2GQTA 2W55A 2UUUA 3DQ0A 5I1VA 4PYTA 1JRPA 3FW8A 5AWVA 3LLBA 1W1KA 2AXRA 2PLIA 3S1FA 1AHZA 1VAOA 5FXPA 3C0PA 2RK5A 4PWCA 1W1OA 2BVFA 1DIIA 5K8EA 1DZNA 1QLTA 1WVEA 2Y3RA 3AM9A 1ZXIC 2I0KA 2W3RA 1SB3B 4O95A 1N5XA 2Y4GA 1W1SA 3I99A 2VFRA 3FWAA 2Y08A 2R2ZA 5FXDA 2VFVA 2W54A 3EUB3 4BCAA 3NVZB 5HHZA 1W1JA 4HG0A 2VFTA 3D2DA 4UD8A 1F0XA 4JAYA 1QLUA 1W1RA 1E0YA 1HSKA 4PWBA 5G5GB 3PQBA 1T3QC 1W1QA 5L6FA 4ML8A 3D2JA 2GQUA 1WVFA 1I19A 3HSUA 1UXYA 5ADZA 3W8XA 5FXEA 1N5WC 3NVVB 1AHUA 3TX1A 2P3HA 1JROA 3S1CA 2QKNA 4MLAA 2E3TA 3GSYA 2VFUA 1MBTA 3B9JB 4OALA 1DIQA 4BC7A 4BC9A 4DNSA 3POPA 5D79A 4EC3A 4PVHA 2Q4WA 1FIQB 2P4PA 3S1EA 5AE3A 3TSJA 1W1MA 2PLSA 2VAOA 5G5HB 4PZFA 2YVSA 4BBYA 1N60C 1WYGA 3RJ8A 1E8GA 2UUVA 1FO4A 4PVKA 2OAIA 4JB1A 1FFUC 5HQXA 2P13A 3RJAA 2WDWA 3KJMA 2VFSA 3AN1A 3JS8A 3NS1B 4PVJA 1ZR6A 3W8ZA 2QPMA 1N61C 4PVEA 5FXFA 3ETRB 1VDVA 2MBRA 3D2HA 3NRZB 3NVWB 3W8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RM6 B;  2NQW A;  3LAE A;  3PM9 A;  3FW7 A;  4XLO A;  2W3S A;  5HMR A;  3DED A;  2O3G A;  2BVG A;  3S1D A;  3BW7 A;  2EXR A;  3SR6 B;  1E8F A;  2R8D A;  5AE2 A;  1V97 A;  3AMZ A;  3NVY B;  5AE1 A;  3FW9 A;  3HRD C;  1N63 C;  3VTE A;  4ZOH B;  2Q85 A;  1W1L A;  2BVH A;  1AHV A;  1E8H A;  1FFV C;  1N62 C;  1MBB A;  3TSH A;  2GQT A;  2W55 A;  3DQ0 A;  4PYT A;  1JRP A;  3FW8 A;  3LLB A;  1W1K A;  2AXR A;  2PLI A;  3S1F A;  1AHZ A;  1VAO A;  5FXP A;  3C0P A;  2RK5 A;  4PWC A;  1W1O A;  2BVF A;  1DII A;  1DZN A;  1QLT A;  1WVE A;  3AM9 A;  1ZXI C;  2I0K A;  2W3R A;  1SB3 B;  4O95 A;  1N5X A;  1W1S A;  3I99 A;  2VFR A;  3FWA A;  2R2Z A;  5FXD A;  2VFV A;  2W54 A;  3EUB 3;  4BCA A;  3NVZ B;  5HHZ A;  1W1J A;  4HG0 A;  2VFT A;  3D2D A;  4UD8 A;  1F0X A;  4JAY A;  1QLU A;  1W1R A;  1E0Y A;  1HSK A;  4PWB A;  5G5G B;  1T3Q C;  1W1Q A;  4ML8 A;  3D2J A;  2GQU A;  1WVF A;  1I19 A;  1UXY A;  5ADZ A;  3W8X A;  5FXE A;  1N5W C;  3NVV B;  1AHU A;  3TX1 A;  2P3H A;  1JRO A;  3S1C A;  2QKN A;  4MLA A;  2E3T A;  3GSY A;  2VFU A;  1MBT A;  3B9J B;  4OAL A;  1DIQ A;  4BC7 A;  4BC9 A;  4DNS A;  5D79 A;  4EC3 A;  4PVH A;  2Q4W A;  1FIQ B;  2P4P A;  3S1E A;  5AE3 A;  3TSJ A;  1W1M A;  2PLS A;  2VAO A;  5G5H B;  4PZF A;  2YVS A;  4BBY A;  1N60 C;  1WYG A;  1E8G A;  1FO4 A;  4PVK A;  2OAI A;  4JB1 A;  1FFU C;  5HQX A;  2P13 A;  3KJM A;  2VFS A;  3AN1 A;  3JS8 A;  3NS1 B;  4PVJ A;  1ZR6 A;  3W8Z A;  2QPM A;  1N61 C;  4PVE A;  5FXF A;  3ETR B;  1VDV A;  2MBR A;  3D2H A;  3NRZ B;  3NVW B;  3W8W A; 
#chains in the Genus database with same CATH topology
 1RM6 B;  2NQW A;  3LAE A;  3PM9 A;  3FW7 A;  4XLO A;  2W3S A;  5HMR A;  3DED A;  2O3G A;  2BVG A;  3S1D A;  5I1W A;  3BW7 A;  2EXR A;  3SR6 B;  1E8F A;  2R8D A;  5AE2 A;  1V97 A;  3AMZ A;  3NVY B;  5AE1 A;  3FW9 A;  3HRD C;  1N63 C;  3VTE A;  4ZOH B;  2Q85 A;  5L6G A;  1W1L A;  2IPI A;  2BVH A;  1AHV A;  1E8H A;  1FFV C;  1N62 C;  1MBB A;  3TSH A;  2Y3S A;  2GQT A;  2W55 A;  2UUU A;  3DQ0 A;  5I1V A;  4PYT A;  1JRP A;  3FW8 A;  5AWV A;  3LLB A;  1W1K A;  2AXR A;  2PLI A;  3S1F A;  1AHZ A;  1VAO A;  5FXP A;  3C0P A;  2RK5 A;  4PWC A;  1W1O A;  2BVF A;  1DII A;  5K8E A;  1DZN A;  1QLT A;  1WVE A;  2Y3R A;  3AM9 A;  1ZXI C;  2I0K A;  2W3R A;  1SB3 B;  4O95 A;  1N5X A;  2Y4G A;  1W1S A;  3I99 A;  2VFR A;  3FWA A;  2Y08 A;  2R2Z A;  5FXD A;  2VFV A;  2W54 A;  3EUB 3;  4BCA A;  3NVZ B;  5HHZ A;  1W1J A;  4HG0 A;  2VFT A;  3D2D A;  4UD8 A;  1F0X A;  4JAY A;  1QLU A;  1W1R A;  1E0Y A;  1HSK A;  4PWB A;  5G5G B;  3PQB A;  1T3Q C;  1W1Q A;  5L6F A;  4ML8 A;  3D2J A;  2GQU A;  1WVF A;  1I19 A;  3HSU A;  1UXY A;  5ADZ A;  3W8X A;  5FXE A;  1N5W C;  3EJB B;  3NVV B;  1AHU A;  3TX1 A;  2P3H A;  1JRO A;  3S1C A;  2QKN A;  4MLA A;  3EJE B;  2E3T A;  3GSY A;  2VFU A;  1MBT A;  3B9J B;  4OAL A;  1DIQ A;  4BC7 A;  4BC9 A;  4DNS A;  3POP A;  5D79 A;  4EC3 A;  4PVH A;  2Q4W A;  1FIQ B;  2P4P A;  3S1E A;  5AE3 A;  3TSJ A;  3EJD B;  1W1M A;  2PLS A;  2VAO A;  5G5H B;  4PZF A;  2YVS A;  4BBY A;  1N60 C;  1WYG A;  3RJ8 A;  1E8G A;  2UUV A;  1FO4 A;  4PVK A;  2OAI A;  4JB1 A;  1FFU C;  5HQX A;  2P13 A;  3RJA A;  2WDW A;  3KJM A;  2VFS A;  3AN1 A;  3JS8 A;  3NS1 B;  4PVJ A;  1ZR6 A;  3W8Z A;  2QPM A;  1N61 C;  4PVE A;  5FXF A;  3ETR B;  1VDV A;  2MBR A;  3D2H A;  3NRZ B;  3NVW B;  3W8W A; 
#chains in the Genus database with same CATH homology
 1RM6 B;  2NQW A;  3LAE A;  3PM9 A;  3FW7 A;  4XLO A;  2W3S A;  5HMR A;  3DED A;  2O3G A;  2BVG A;  3S1D A;  5I1W A;  3BW7 A;  2EXR A;  3SR6 B;  1E8F A;  2R8D A;  5AE2 A;  1V97 A;  3AMZ A;  3NVY B;  5AE1 A;  3FW9 A;  3HRD C;  1N63 C;  3VTE A;  4ZOH B;  2Q85 A;  5L6G A;  1W1L A;  2IPI A;  2BVH A;  1AHV A;  1E8H A;  1FFV C;  1N62 C;  1MBB A;  3TSH A;  2Y3S A;  2GQT A;  2W55 A;  2UUU A;  3DQ0 A;  5I1V A;  4PYT A;  1JRP A;  3FW8 A;  5AWV A;  3LLB A;  1W1K A;  2AXR A;  2PLI A;  3S1F A;  1AHZ A;  1VAO A;  5FXP A;  3C0P A;  2RK5 A;  4PWC A;  1W1O A;  2BVF A;  1DII A;  5K8E A;  1DZN A;  1QLT A;  1WVE A;  2Y3R A;  3AM9 A;  1ZXI C;  2I0K A;  2W3R A;  1SB3 B;  4O95 A;  1N5X A;  2Y4G A;  1W1S A;  3I99 A;  2VFR A;  3FWA A;  2Y08 A;  2R2Z A;  5FXD A;  2VFV A;  2W54 A;  3EUB 3;  4BCA A;  3NVZ B;  5HHZ A;  1W1J A;  4HG0 A;  2VFT A;  3D2D A;  4UD8 A;  1F0X A;  4JAY A;  1QLU A;  1W1R A;  1E0Y A;  1HSK A;  4PWB A;  5G5G B;  3PQB A;  1T3Q C;  1W1Q A;  5L6F A;  4ML8 A;  3D2J A;  2GQU A;  1WVF A;  1I19 A;  3HSU A;  1UXY A;  5ADZ A;  3W8X A;  5FXE A;  1N5W C;  3NVV B;  1AHU A;  3TX1 A;  2P3H A;  1JRO A;  3S1C A;  2QKN A;  4MLA A;  2E3T A;  3GSY A;  2VFU A;  1MBT A;  3B9J B;  4OAL A;  1DIQ A;  4BC7 A;  4BC9 A;  4DNS A;  3POP A;  5D79 A;  4EC3 A;  4PVH A;  2Q4W A;  1FIQ B;  2P4P A;  3S1E A;  5AE3 A;  3TSJ A;  1W1M A;  2PLS A;  2VAO A;  5G5H B;  4PZF A;  2YVS A;  4BBY A;  1N60 C;  1WYG A;  3RJ8 A;  1E8G A;  2UUV A;  1FO4 A;  4PVK A;  2OAI A;  4JB1 A;  1FFU C;  5HQX A;  2P13 A;  3RJA A;  2WDW A;  3KJM A;  2VFS A;  3AN1 A;  3JS8 A;  3NS1 B;  4PVJ A;  1ZR6 A;  3W8Z A;  2QPM A;  1N61 C;  4PVE A;  5FXF A;  3ETR B;  1VDV A;  2MBR A;  3D2H A;  3NRZ B;  3NVW B;  3W8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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