2R8DA

The structure of transporter associated domain corc_hlyc from a xylella fastidiosa temecula1 hemolysin in complex with mg++ and mn++
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
85
structure length
78
Chain Sequence
ALMVTREDGSFLIDGTLPIEELREVLGAENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDLLLQRLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Hemolysin
publication title The structure of transporter associated domain CorC in complex with Mg++ and Mn++ from Xylella fastidiosa.
rcsb
source organism Xylella fastidiosa
total genus 16
structure length 78
sequence length 85
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2r8dA00
1N5XA 1VDVA 1W1SA 1W1JA 2E3TA 5HHZA 3NRZB 3C0PA 2W54A 4PYTA 1DIQA 2VFRA 2R2ZA 5AE2A 5G5HB 1I19A 5ADZA 2OAIA 1WYGA 1VAOA 3EUB3 3LLBA 4XLOA 1W1LA 3NVZB 3SR6B 2BVGA 5FXDA 1AHVA 1FFVC 2W3RA 3AMZA 1SB3B 1DZNA 1F0XA 4ZOHB 1N5WC 5FXEA 2YVSA 2AXRA 5HQXA 1DIIA 2EXRA 4OALA 4HG0A 1W1OA 1FFUC 1MBTA 2VAOA 5HMRA 3DQ0A 3NVVB 1AHZA 5G5GB 1E0YA 1QLTA 2VFTA 2W3SA 3DEDA 3LAEA 1W1QA 4JAYA 2P4PA 5FXFA 2BVHA 4ML8A 1E8FA 4BC9A 1W1KA 1QLUA 3JS8A 1N60C 1RM6B 5AE3A 2I0KA 3W8XA 1UXYA 2Q4WA 2GQTA 3AM9A 2R8DA 4JB1A 1AHUA 1WVFA 2P13A 3BW7A 3ETRB 1E8GA 2VFUA 2GQUA 3I99A 4BBYA 3NVYB 3W8WA 1JRPA 2PLIA 3S1CA 4MLAA 3KJMA 1T3QC 3PM9A 3AN1A 1FO4A 2VFSA 2QKNA 3B9JB 2Q85A 2NQWA 1V97A 4BC7A 1N63C 2MBRA 4O95A 1MBBA 3HRDC 1ZXIC 2VFVA 3W8ZA 5AE1A 5FXPA 3NS1B 2BVFA 2P3HA 2RK5A 2QPMA 2O3GA 1WVEA 2W55A 1E8HA 1N61C 4BCAA 3S1DA 3TX1A 1JROA 2PLSA 1W1MA 1ZR6A 1W1RA 3S1FA 1FIQB 3S1EA 1N62C 3NVWB 1HSKA
chains in the Genus database with same CATH superfamily
1N5XA 1VDVA 1W1SA 1W1JA 2E3TA 5HHZA 3NRZB 3C0PA 4PVKA 2W54A 4PYTA 4PVEA 1DIQA 2VFRA 3TSJA 2R2ZA 5AE2A 5G5HB 1I19A 5ADZA 2OAIA 1WYGA 3FWAA 1VAOA 3EUB3 3LLBA 4XLOA 1W1LA 3NVZB 3SR6B 2BVGA 5FXDA 2Y3SA 1AHVA 2Y08A 1FFVC 2W3RA 3TSHA 3AMZA 3D2HA 1SB3B 1DZNA 1F0XA 4PWBA 3RJ8A 4ZOHB 4PVJA 3RJAA 1N5WC 5FXEA 2YVSA 2Y4GA 2AXRA 5HQXA 1DIIA 2EXRA 4OALA 2UUVA 3FW7A 4HG0A 1W1OA 1FFUC 1MBTA 2IPIA 2VAOA 3DQ0A 3NVVB 5HMRA 1AHZA 4UD8A 4EC3A 5G5GB 3GSYA 1E0YA 1QLTA 2VFTA 2W3SA 3DEDA 3LAEA 1W1QA 4JAYA 2P4PA 5FXFA 2BVHA 3PQBA 5AWVA 4ML8A 4DNSA 3D2DA 1E8FA 4BC9A 1W1KA 3FW9A 1QLUA 3JS8A 1N60C 1RM6B 5AE3A 4PWCA 2I0KA 3W8XA 1UXYA 2Q4WA 2GQTA 3AM9A 5D79A 2R8DA 4JB1A 4PZFA 1AHUA 1WVFA 2P13A 5L6FA 3BW7A 2UUUA 3ETRB 1E8GA 2VFUA 2Y3RA 2GQUA 3I99A 4BBYA 3FW8A 3NVYB 1JRPA 3W8WA 2PLIA 3S1CA 4MLAA 3KJMA 1T3QC 3PM9A 3AN1A 5I1VA 1FO4A 2VFSA 2QKNA 3B9JB 2Q85A 2NQWA 1V97A 4BC7A 3D2JA 1N63C 2MBRA 3VTEA 4O95A 5K8EA 1MBBA 3HRDC 1ZXIC 2VFVA 3W8ZA 5AE1A 5FXPA 5L6GA 3NS1B 2BVFA 2P3HA 2RK5A 2QPMA 4PVHA 2O3GA 1WVEA 2W55A 1E8HA 1N61C 4BCAA 3S1DA 3TX1A 1JROA 2PLSA 1W1MA 3HSUA 1ZR6A 1W1RA 3POPA 3S1FA 1FIQB 2WDWA 5I1WA 3S1EA 1N62C 3NVWB 1HSKA
chains in the Genus database with same CATH topology
1N5XA 1VDVA 1W1SA 1W1JA 2E3TA 5HHZA 3NRZB 3C0PA 4PVKA 2W54A 4PYTA 4PVEA 1DIQA 2VFRA 3TSJA 2R2ZA 5AE2A 5G5HB 1I19A 5ADZA 2OAIA 1WYGA 3FWAA 1VAOA 3EUB3 3LLBA 4XLOA 1W1LA 3NVZB 3SR6B 2BVGA 5FXDA 2Y3SA 1AHVA 2Y08A 1FFVC 2W3RA 3TSHA 3AMZA 3D2HA 1SB3B 1DZNA 1F0XA 4PWBA 3RJ8A 4ZOHB 4PVJA 3RJAA 1N5WC 5FXEA 2YVSA 2Y4GA 2AXRA 5HQXA 1DIIA 2EXRA 4OALA 2UUVA 3FW7A 4HG0A 1W1OA 1FFUC 1MBTA 2IPIA 2VAOA 3DQ0A 3NVVB 5HMRA 1AHZA 4UD8A 4EC3A 5G5GB 3GSYA 1E0YA 1QLTA 2VFTA 2W3SA 3DEDA 3LAEA 1W1QA 4JAYA 2P4PA 5FXFA 2BVHA 3PQBA 5AWVA 4ML8A 4DNSA 3D2DA 1E8FA 4BC9A 1W1KA 3FW9A 1QLUA 3JS8A 1N60C 1RM6B 5AE3A 4PWCA 2I0KA 3W8XA 1UXYA 2Q4WA 2GQTA 3AM9A 5D79A 2R8DA 4JB1A 4PZFA 1AHUA 1WVFA 2P13A 5L6FA 3BW7A 2UUUA 3ETRB 1E8GA 2VFUA 2Y3RA 2GQUA 3I99A 4BBYA 3FW8A 3NVYB 1JRPA 3W8WA 2PLIA 3S1CA 4MLAA 3KJMA 1T3QC 3PM9A 3AN1A 5I1VA 1FO4A 2VFSA 2QKNA 3B9JB 2Q85A 2NQWA 1V97A 4BC7A 3D2JA 1N63C 2MBRA 3VTEA 4O95A 5K8EA 1MBBA 3HRDC 1ZXIC 2VFVA 3W8ZA 5AE1A 5FXPA 5L6GA 3NS1B 2BVFA 2P3HA 2RK5A 2QPMA 4PVHA 2O3GA 1WVEA 2W55A 1E8HA 1N61C 4BCAA 3S1DA 3TX1A 1JROA 2PLSA 1W1MA 3HSUA 1ZR6A 1W1RA 3POPA 3S1FA 1FIQB 2WDWA 5I1WA 3S1EA 1N62C 3NVWB 1HSKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N5X A;  1VDV A;  1W1S A;  1W1J A;  2E3T A;  5HHZ A;  3NRZ B;  3C0P A;  2W54 A;  4PYT A;  1DIQ A;  2VFR A;  2R2Z A;  5AE2 A;  5G5H B;  1I19 A;  5ADZ A;  2OAI A;  1WYG A;  1VAO A;  3EUB 3;  3LLB A;  4XLO A;  1W1L A;  3NVZ B;  3SR6 B;  2BVG A;  5FXD A;  1AHV A;  1FFV C;  2W3R A;  3AMZ A;  1SB3 B;  1DZN A;  1F0X A;  4ZOH B;  1N5W C;  5FXE A;  2YVS A;  2AXR A;  5HQX A;  1DII A;  2EXR A;  4OAL A;  4HG0 A;  1W1O A;  1FFU C;  1MBT A;  2VAO A;  5HMR A;  3DQ0 A;  3NVV B;  1AHZ A;  5G5G B;  1E0Y A;  1QLT A;  2VFT A;  2W3S A;  3DED A;  3LAE A;  1W1Q A;  4JAY A;  2P4P A;  5FXF A;  2BVH A;  4ML8 A;  1E8F A;  4BC9 A;  1W1K A;  1QLU A;  3JS8 A;  1N60 C;  1RM6 B;  5AE3 A;  2I0K A;  3W8X A;  1UXY A;  2Q4W A;  2GQT A;  3AM9 A;  2R8D A;  4JB1 A;  1AHU A;  1WVF A;  2P13 A;  3BW7 A;  3ETR B;  1E8G A;  2VFU A;  2GQU A;  3I99 A;  4BBY A;  3NVY B;  3W8W A;  1JRP A;  2PLI A;  3S1C A;  4MLA A;  3KJM A;  1T3Q C;  3PM9 A;  3AN1 A;  1FO4 A;  2VFS A;  2QKN A;  3B9J B;  2Q85 A;  2NQW A;  1V97 A;  4BC7 A;  1N63 C;  2MBR A;  4O95 A;  1MBB A;  3HRD C;  1ZXI C;  2VFV A;  3W8Z A;  5AE1 A;  5FXP A;  3NS1 B;  2BVF A;  2P3H A;  2RK5 A;  2QPM A;  2O3G A;  1WVE A;  2W55 A;  1E8H A;  1N61 C;  4BCA A;  3S1D A;  3TX1 A;  1JRO A;  2PLS A;  1W1M A;  1ZR6 A;  1W1R A;  3S1F A;  1FIQ B;  3S1E A;  1N62 C;  3NVW B;  1HSK A; 
#chains in the Genus database with same CATH topology
 1N5X A;  1VDV A;  1W1S A;  1W1J A;  2E3T A;  5HHZ A;  3NRZ B;  3C0P A;  4PVK A;  2W54 A;  4PYT A;  4PVE A;  1DIQ A;  2VFR A;  3TSJ A;  2R2Z A;  5AE2 A;  5G5H B;  1I19 A;  5ADZ A;  2OAI A;  1WYG A;  3FWA A;  1VAO A;  3EUB 3;  3LLB A;  4XLO A;  1W1L A;  3NVZ B;  3SR6 B;  2BVG A;  5FXD A;  2Y3S A;  1AHV A;  2Y08 A;  1FFV C;  2W3R A;  3TSH A;  3AMZ A;  3D2H A;  1SB3 B;  1DZN A;  1F0X A;  4PWB A;  3RJ8 A;  4ZOH B;  4PVJ A;  3RJA A;  1N5W C;  5FXE A;  2YVS A;  2Y4G A;  2AXR A;  5HQX A;  1DII A;  2EXR A;  4OAL A;  2UUV A;  3FW7 A;  4HG0 A;  1W1O A;  1FFU C;  1MBT A;  2IPI A;  2VAO A;  3DQ0 A;  3NVV B;  5HMR A;  1AHZ A;  4UD8 A;  4EC3 A;  5G5G B;  3GSY A;  1E0Y A;  1QLT A;  2VFT A;  2W3S A;  3DED A;  3LAE A;  1W1Q A;  4JAY A;  2P4P A;  5FXF A;  2BVH A;  3PQB A;  5AWV A;  4ML8 A;  4DNS A;  3D2D A;  1E8F A;  4BC9 A;  1W1K A;  3FW9 A;  1QLU A;  3JS8 A;  1N60 C;  1RM6 B;  5AE3 A;  4PWC A;  2I0K A;  3W8X A;  1UXY A;  2Q4W A;  2GQT A;  3AM9 A;  5D79 A;  2R8D A;  4JB1 A;  4PZF A;  1AHU A;  1WVF A;  2P13 A;  5L6F A;  3BW7 A;  2UUU A;  3ETR B;  1E8G A;  2VFU A;  2Y3R A;  2GQU A;  3I99 A;  4BBY A;  3FW8 A;  3NVY B;  1JRP A;  3W8W A;  2PLI A;  3S1C A;  4MLA A;  3KJM A;  1T3Q C;  3PM9 A;  3AN1 A;  5I1V A;  1FO4 A;  2VFS A;  2QKN A;  3B9J B;  2Q85 A;  2NQW A;  1V97 A;  4BC7 A;  3D2J A;  1N63 C;  2MBR A;  3VTE A;  4O95 A;  5K8E A;  1MBB A;  3HRD C;  1ZXI C;  2VFV A;  3W8Z A;  5AE1 A;  5FXP A;  5L6G A;  3NS1 B;  2BVF A;  2P3H A;  2RK5 A;  2QPM A;  4PVH A;  2O3G A;  1WVE A;  2W55 A;  1E8H A;  1N61 C;  4BCA A;  3S1D A;  3TX1 A;  1JRO A;  2PLS A;  1W1M A;  3HSU A;  1ZR6 A;  1W1R A;  3POP A;  3S1F A;  1FIQ B;  2WDW A;  5I1W A;  3S1E A;  1N62 C;  3NVW B;  1HSK A; 
#chains in the Genus database with same CATH homology
 1N5X A;  1VDV A;  1W1S A;  1W1J A;  2E3T A;  5HHZ A;  3NRZ B;  3C0P A;  4PVK A;  2W54 A;  4PYT A;  4PVE A;  1DIQ A;  2VFR A;  3TSJ A;  2R2Z A;  5AE2 A;  5G5H B;  1I19 A;  5ADZ A;  2OAI A;  1WYG A;  3FWA A;  1VAO A;  3EUB 3;  3LLB A;  4XLO A;  1W1L A;  3NVZ B;  3SR6 B;  2BVG A;  5FXD A;  2Y3S A;  1AHV A;  2Y08 A;  1FFV C;  2W3R A;  3TSH A;  3AMZ A;  3D2H A;  1SB3 B;  1DZN A;  1F0X A;  4PWB A;  3RJ8 A;  4ZOH B;  4PVJ A;  3RJA A;  1N5W C;  5FXE A;  2YVS A;  2Y4G A;  2AXR A;  5HQX A;  1DII A;  2EXR A;  4OAL A;  2UUV A;  3FW7 A;  4HG0 A;  1W1O A;  1FFU C;  1MBT A;  2IPI A;  2VAO A;  3DQ0 A;  3NVV B;  5HMR A;  1AHZ A;  4UD8 A;  4EC3 A;  5G5G B;  3GSY A;  1E0Y A;  1QLT A;  2VFT A;  2W3S A;  3DED A;  3LAE A;  1W1Q A;  4JAY A;  2P4P A;  5FXF A;  2BVH A;  3PQB A;  5AWV A;  4ML8 A;  4DNS A;  3D2D A;  1E8F A;  4BC9 A;  1W1K A;  3FW9 A;  1QLU A;  3JS8 A;  1N60 C;  1RM6 B;  5AE3 A;  4PWC A;  2I0K A;  3W8X A;  1UXY A;  2Q4W A;  2GQT A;  3AM9 A;  5D79 A;  2R8D A;  4JB1 A;  4PZF A;  1AHU A;  1WVF A;  2P13 A;  5L6F A;  3BW7 A;  2UUU A;  3ETR B;  1E8G A;  2VFU A;  2Y3R A;  2GQU A;  3I99 A;  4BBY A;  3FW8 A;  3NVY B;  1JRP A;  3W8W A;  2PLI A;  3S1C A;  4MLA A;  3KJM A;  1T3Q C;  3PM9 A;  3AN1 A;  5I1V A;  1FO4 A;  2VFS A;  2QKN A;  3B9J B;  2Q85 A;  2NQW A;  1V97 A;  4BC7 A;  3D2J A;  1N63 C;  2MBR A;  3VTE A;  4O95 A;  5K8E A;  1MBB A;  3HRD C;  1ZXI C;  2VFV A;  3W8Z A;  5AE1 A;  5FXP A;  5L6G A;  3NS1 B;  2BVF A;  2P3H A;  2RK5 A;  2QPM A;  4PVH A;  2O3G A;  1WVE A;  2W55 A;  1E8H A;  1N61 C;  4BCA A;  3S1D A;  3TX1 A;  1JRO A;  2PLS A;  1W1M A;  3HSU A;  1ZR6 A;  1W1R A;  3POP A;  3S1F A;  1FIQ B;  2WDW A;  5I1W A;  3S1E A;  1N62 C;  3NVW B;  1HSK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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