1E8GA

Structure of the h61t double mutant of vanillyl-alcohol oxidase in complex with fluoro-cresol
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8gA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8gA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8gA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8gA03
1W1QA 3S1CA 3JS8A 2EXRA 3FW7A 4EC3A 1E8FA 4PWBA 1VAOA 3NVYB 4ML8A 2AXRA 3ETRB 5FXPA 2GQTA 4XLOA 1I19A 2W3RA 2OAIA 3S1FA 1FFUC 3GSYA 1E0YA 1V97A 3NVZB 1DIIA 1W1JA 3W8XA 2RK5A 3W8ZA 1W1OA 3D2HA 1HSKA 1AHZA 3SR6B 3NVWB 2VFVA 2BVFA 5G5HB 2BVGA 2MBRA 1E8HA 3NVVB 4PVHA 3VTEA 4PZFA 3BW7A 4HG0A 5G5GB 3D2JA 5D79A 4BC7A 3FWAA 1T3QC 5FXEA 1AHVA 1QLUA 2VFSA 3AMZA 1VDVA 1DZNA 2P13A 2QPMA 4BCAA 5ADZA 1N60C 1FO4A 2VFRA 4O95A 2VFUA 1ZR6A 1N61C 1MBBA 1E8GA 2W54A 2QKNA 4MLAA 3B9JB 3DEDA 1QLTA 1W1MA 2O3GA 2YVSA 3S1EA 2E3TA 3KJMA 1W1SA 2P4PA 3EUB3 4PVJA 2Q85A 3NRZB 1N5XA 3AN1A 1ZXIC 1AHUA 1W1LA 2VFTA 5HMRA 4JB1A 2NQWA 5FXDA 1JROA 3AM9A 3W8WA 4BBYA 5HHZA 3HRDC 5FXFA 2W55A 3NS1B 4PWCA 1WVFA 3TSJA 1N62C 3C0PA 5HQXA 1FFVC 2Q4WA 4UD8A 3LAEA 4ZOHB 4PVEA 2VAOA 1RM6B 2I0KA 3D2DA 3FW8A 1WVEA 4BC9A 3I99A 1MBTA 2PLIA 3DQ0A 3S1DA 1N63C 2GQUA 1DIQA 1WYGA 4PVKA 2R2ZA 4DNSA 1F0XA 1W1KA 2PLSA 2BVHA 3TX1A 3TSHA 1JRPA 3FW9A 4OALA 1SB3B 2P3HA 5AE1A 4JAYA 5AE2A 2R8DA 3PM9A 1FIQB 2W3SA 5AE3A 1N5WC 1UXYA 3LLBA 4PYTA 1W1RA
chains in the Genus database with same CATH superfamily
1W1QA 3S1CA 3JS8A 2EXRA 3FW7A 4EC3A 1E8FA 4PWBA 1VAOA 2Y08A 3NVYB 4ML8A 2AXRA 3ETRB 2UUVA 5FXPA 2WDWA 2GQTA 4XLOA 1I19A 2W3RA 2Y4GA 2OAIA 3S1FA 1FFUC 3GSYA 1E0YA 1V97A 3NVZB 1DIIA 1W1JA 3W8XA 2RK5A 3W8ZA 1W1OA 3D2HA 1HSKA 1AHZA 3SR6B 3NVWB 2VFVA 2BVFA 5G5HB 2BVGA 2UUUA 2MBRA 1E8HA 3RJAA 3NVVB 4PVHA 3VTEA 4PZFA 3BW7A 4HG0A 5G5GB 3D2JA 5D79A 4BC7A 3FWAA 1T3QC 5FXEA 1AHVA 1QLUA 2VFSA 5L6GA 5AWVA 3AMZA 1VDVA 1DZNA 2P13A 5I1WA 2QPMA 2Y3SA 4BCAA 5ADZA 1N60C 1FO4A 2VFRA 4O95A 2VFUA 1ZR6A 1N61C 1MBBA 1E8GA 2W54A 3HSUA 2QKNA 3EJEB 3POPA 4MLAA 3B9JB 3DEDA 1QLTA 1W1MA 2O3GA 2YVSA 3S1EA 2E3TA 3KJMA 1W1SA 2P4PA 3EUB3 4PVJA 2IPIA 2Q85A 3NRZB 1N5XA 3AN1A 1ZXIC 1AHUA 1W1LA 2VFTA 5HMRA 4JB1A 2NQWA 5FXDA 1JROA 3AM9A 3W8WA 4BBYA 5HHZA 3EJBB 3HRDC 5FXFA 2W55A 3NS1B 4PWCA 1WVFA 3TSJA 1N62C 3C0PA 5HQXA 1FFVC 2Q4WA 4UD8A 3LAEA 4ZOHB 4PVEA 2Y3RA 2VAOA 1RM6B 2I0KA 3D2DA 3FW8A 1WVEA 4BC9A 3I99A 1MBTA 5L6FA 2PLIA 3DQ0A 3EJDB 3S1DA 1N63C 5K8EA 2GQUA 1DIQA 1WYGA 4PVKA 5I1VA 2R2ZA 4DNSA 1F0XA 1W1KA 2PLSA 2BVHA 3TX1A 3TSHA 1JRPA 3FW9A 4OALA 1SB3B 2P3HA 5AE1A 4JAYA 5AE2A 2R8DA 3PM9A 3RJ8A 3PQBA 1FIQB 2W3SA 5AE3A 1N5WC 1UXYA 3LLBA 4PYTA 1W1RA
chains in the Genus database with same CATH topology
1W1QA 3S1CA 3JS8A 2EXRA 3FW7A 4EC3A 1E8FA 4PWBA 1VAOA 2Y08A 3NVYB 4ML8A 2AXRA 3ETRB 2UUVA 5FXPA 2WDWA 2GQTA 4XLOA 1I19A 2W3RA 2Y4GA 2OAIA 3S1FA 1FFUC 3GSYA 1E0YA 1V97A 3NVZB 1DIIA 1W1JA 3W8XA 2RK5A 3W8ZA 1W1OA 3D2HA 1HSKA 1AHZA 3SR6B 3NVWB 2VFVA 2BVFA 5G5HB 2BVGA 2UUUA 2MBRA 1E8HA 3RJAA 3NVVB 4PVHA 3VTEA 4PZFA 3BW7A 4HG0A 5G5GB 3D2JA 5D79A 4BC7A 3FWAA 1T3QC 5FXEA 1AHVA 1QLUA 2VFSA 5L6GA 5AWVA 3AMZA 1VDVA 1DZNA 2P13A 5I1WA 2QPMA 2Y3SA 4BCAA 5ADZA 1N60C 1FO4A 2VFRA 4O95A 2VFUA 1ZR6A 1N61C 1MBBA 1E8GA 2W54A 3HSUA 2QKNA 3POPA 4MLAA 3B9JB 3DEDA 1QLTA 1W1MA 2O3GA 2YVSA 3S1EA 2E3TA 3KJMA 1W1SA 2P4PA 3EUB3 4PVJA 2IPIA 2Q85A 3NRZB 1N5XA 3AN1A 1ZXIC 1AHUA 1W1LA 2VFTA 5HMRA 4JB1A 2NQWA 5FXDA 1JROA 3AM9A 3W8WA 4BBYA 5HHZA 3HRDC 5FXFA 2W55A 3NS1B 4PWCA 1WVFA 3TSJA 1N62C 3C0PA 5HQXA 1FFVC 2Q4WA 4UD8A 3LAEA 4ZOHB 4PVEA 2Y3RA 2VAOA 1RM6B 2I0KA 3D2DA 3FW8A 1WVEA 4BC9A 3I99A 1MBTA 5L6FA 2PLIA 3DQ0A 3S1DA 1N63C 5K8EA 2GQUA 1DIQA 1WYGA 4PVKA 5I1VA 2R2ZA 4DNSA 1F0XA 1W1KA 2PLSA 2BVHA 3TX1A 3TSHA 1JRPA 3FW9A 4OALA 1SB3B 2P3HA 5AE1A 4JAYA 5AE2A 2R8DA 3PM9A 3RJ8A 3PQBA 1FIQB 2W3SA 5AE3A 1N5WC 1UXYA 3LLBA 4PYTA 1W1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W1Q A;  3S1C A;  3JS8 A;  2EXR A;  3FW7 A;  4EC3 A;  1E8F A;  4PWB A;  1VAO A;  3NVY B;  4ML8 A;  2AXR A;  3ETR B;  5FXP A;  2GQT A;  4XLO A;  1I19 A;  2W3R A;  2OAI A;  3S1F A;  1FFU C;  3GSY A;  1E0Y A;  1V97 A;  3NVZ B;  1DII A;  1W1J A;  3W8X A;  2RK5 A;  3W8Z A;  1W1O A;  3D2H A;  1HSK A;  1AHZ A;  3SR6 B;  3NVW B;  2VFV A;  2BVF A;  5G5H B;  2BVG A;  2MBR A;  1E8H A;  3NVV B;  4PVH A;  3VTE A;  4PZF A;  3BW7 A;  4HG0 A;  5G5G B;  3D2J A;  5D79 A;  4BC7 A;  3FWA A;  1T3Q C;  5FXE A;  1AHV A;  1QLU A;  2VFS A;  3AMZ A;  1VDV A;  1DZN A;  2P13 A;  2QPM A;  4BCA A;  5ADZ A;  1N60 C;  1FO4 A;  2VFR A;  4O95 A;  2VFU A;  1ZR6 A;  1N61 C;  1MBB A;  1E8G A;  2W54 A;  2QKN A;  4MLA A;  3B9J B;  3DED A;  1QLT A;  1W1M A;  2O3G A;  2YVS A;  3S1E A;  2E3T A;  3KJM A;  1W1S A;  2P4P A;  3EUB 3;  4PVJ A;  2Q85 A;  3NRZ B;  1N5X A;  3AN1 A;  1ZXI C;  1AHU A;  1W1L A;  2VFT A;  5HMR A;  4JB1 A;  2NQW A;  5FXD A;  1JRO A;  3AM9 A;  3W8W A;  4BBY A;  5HHZ A;  3HRD C;  5FXF A;  2W55 A;  3NS1 B;  4PWC A;  1WVF A;  3TSJ A;  1N62 C;  3C0P A;  5HQX A;  1FFV C;  2Q4W A;  4UD8 A;  3LAE A;  4ZOH B;  4PVE A;  2VAO A;  1RM6 B;  2I0K A;  3D2D A;  3FW8 A;  1WVE A;  4BC9 A;  3I99 A;  1MBT A;  2PLI A;  3DQ0 A;  3S1D A;  1N63 C;  2GQU A;  1DIQ A;  1WYG A;  4PVK A;  2R2Z A;  4DNS A;  1F0X A;  1W1K A;  2PLS A;  2BVH A;  3TX1 A;  3TSH A;  1JRP A;  3FW9 A;  4OAL A;  1SB3 B;  2P3H A;  5AE1 A;  4JAY A;  5AE2 A;  2R8D A;  3PM9 A;  1FIQ B;  2W3S A;  5AE3 A;  1N5W C;  1UXY A;  3LLB A;  4PYT A;  1W1R A; 
#chains in the Genus database with same CATH topology
 1W1Q A;  3S1C A;  3JS8 A;  2EXR A;  3FW7 A;  4EC3 A;  1E8F A;  4PWB A;  1VAO A;  2Y08 A;  3NVY B;  4ML8 A;  2AXR A;  3ETR B;  2UUV A;  5FXP A;  2WDW A;  2GQT A;  4XLO A;  1I19 A;  2W3R A;  2Y4G A;  2OAI A;  3S1F A;  1FFU C;  3GSY A;  1E0Y A;  1V97 A;  3NVZ B;  1DII A;  1W1J A;  3W8X A;  2RK5 A;  3W8Z A;  1W1O A;  3D2H A;  1HSK A;  1AHZ A;  3SR6 B;  3NVW B;  2VFV A;  2BVF A;  5G5H B;  2BVG A;  2UUU A;  2MBR A;  1E8H A;  3RJA A;  3NVV B;  4PVH A;  3VTE A;  4PZF A;  3BW7 A;  4HG0 A;  5G5G B;  3D2J A;  5D79 A;  4BC7 A;  3FWA A;  1T3Q C;  5FXE A;  1AHV A;  1QLU A;  2VFS A;  5L6G A;  5AWV A;  3AMZ A;  1VDV A;  1DZN A;  2P13 A;  5I1W A;  2QPM A;  2Y3S A;  4BCA A;  5ADZ A;  1N60 C;  1FO4 A;  2VFR A;  4O95 A;  2VFU A;  1ZR6 A;  1N61 C;  1MBB A;  1E8G A;  2W54 A;  3HSU A;  2QKN A;  3EJE B;  3POP A;  4MLA A;  3B9J B;  3DED A;  1QLT A;  1W1M A;  2O3G A;  2YVS A;  3S1E A;  2E3T A;  3KJM A;  1W1S A;  2P4P A;  3EUB 3;  4PVJ A;  2IPI A;  2Q85 A;  3NRZ B;  1N5X A;  3AN1 A;  1ZXI C;  1AHU A;  1W1L A;  2VFT A;  5HMR A;  4JB1 A;  2NQW A;  5FXD A;  1JRO A;  3AM9 A;  3W8W A;  4BBY A;  5HHZ A;  3EJB B;  3HRD C;  5FXF A;  2W55 A;  3NS1 B;  4PWC A;  1WVF A;  3TSJ A;  1N62 C;  3C0P A;  5HQX A;  1FFV C;  2Q4W A;  4UD8 A;  3LAE A;  4ZOH B;  4PVE A;  2Y3R A;  2VAO A;  1RM6 B;  2I0K A;  3D2D A;  3FW8 A;  1WVE A;  4BC9 A;  3I99 A;  1MBT A;  5L6F A;  2PLI A;  3DQ0 A;  3EJD B;  3S1D A;  1N63 C;  5K8E A;  2GQU A;  1DIQ A;  1WYG A;  4PVK A;  5I1V A;  2R2Z A;  4DNS A;  1F0X A;  1W1K A;  2PLS A;  2BVH A;  3TX1 A;  3TSH A;  1JRP A;  3FW9 A;  4OAL A;  1SB3 B;  2P3H A;  5AE1 A;  4JAY A;  5AE2 A;  2R8D A;  3PM9 A;  3RJ8 A;  3PQB A;  1FIQ B;  2W3S A;  5AE3 A;  1N5W C;  1UXY A;  3LLB A;  4PYT A;  1W1R A; 
#chains in the Genus database with same CATH homology
 1W1Q A;  3S1C A;  3JS8 A;  2EXR A;  3FW7 A;  4EC3 A;  1E8F A;  4PWB A;  1VAO A;  2Y08 A;  3NVY B;  4ML8 A;  2AXR A;  3ETR B;  2UUV A;  5FXP A;  2WDW A;  2GQT A;  4XLO A;  1I19 A;  2W3R A;  2Y4G A;  2OAI A;  3S1F A;  1FFU C;  3GSY A;  1E0Y A;  1V97 A;  3NVZ B;  1DII A;  1W1J A;  3W8X A;  2RK5 A;  3W8Z A;  1W1O A;  3D2H A;  1HSK A;  1AHZ A;  3SR6 B;  3NVW B;  2VFV A;  2BVF A;  5G5H B;  2BVG A;  2UUU A;  2MBR A;  1E8H A;  3RJA A;  3NVV B;  4PVH A;  3VTE A;  4PZF A;  3BW7 A;  4HG0 A;  5G5G B;  3D2J A;  5D79 A;  4BC7 A;  3FWA A;  1T3Q C;  5FXE A;  1AHV A;  1QLU A;  2VFS A;  5L6G A;  5AWV A;  3AMZ A;  1VDV A;  1DZN A;  2P13 A;  5I1W A;  2QPM A;  2Y3S A;  4BCA A;  5ADZ A;  1N60 C;  1FO4 A;  2VFR A;  4O95 A;  2VFU A;  1ZR6 A;  1N61 C;  1MBB A;  1E8G A;  2W54 A;  3HSU A;  2QKN A;  3POP A;  4MLA A;  3B9J B;  3DED A;  1QLT A;  1W1M A;  2O3G A;  2YVS A;  3S1E A;  2E3T A;  3KJM A;  1W1S A;  2P4P A;  3EUB 3;  4PVJ A;  2IPI A;  2Q85 A;  3NRZ B;  1N5X A;  3AN1 A;  1ZXI C;  1AHU A;  1W1L A;  2VFT A;  5HMR A;  4JB1 A;  2NQW A;  5FXD A;  1JRO A;  3AM9 A;  3W8W A;  4BBY A;  5HHZ A;  3HRD C;  5FXF A;  2W55 A;  3NS1 B;  4PWC A;  1WVF A;  3TSJ A;  1N62 C;  3C0P A;  5HQX A;  1FFV C;  2Q4W A;  4UD8 A;  3LAE A;  4ZOH B;  4PVE A;  2Y3R A;  2VAO A;  1RM6 B;  2I0K A;  3D2D A;  3FW8 A;  1WVE A;  4BC9 A;  3I99 A;  1MBT A;  5L6F A;  2PLI A;  3DQ0 A;  3S1D A;  1N63 C;  5K8E A;  2GQU A;  1DIQ A;  1WYG A;  4PVK A;  5I1V A;  2R2Z A;  4DNS A;  1F0X A;  1W1K A;  2PLS A;  2BVH A;  3TX1 A;  3TSH A;  1JRP A;  3FW9 A;  4OAL A;  1SB3 B;  2P3H A;  5AE1 A;  4JAY A;  5AE2 A;  2R8D A;  3PM9 A;  3RJ8 A;  3PQB A;  1FIQ B;  2W3S A;  5AE3 A;  1N5W C;  1UXY A;  3LLB A;  4PYT A;  1W1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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