1E8GA

Structure of the h61t double mutant of vanillyl-alcohol oxidase in complex with fluoro-cresol
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8gA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8gA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8gA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8gA03
1FFVC 1MBTA 1E8GA 4UD8A 1QLTA 3ETRB 2VFSA 1W1SA 4BC9A 1W1OA 2I0KA 4PZFA 1E8HA 1FFUC 3FWAA 1I19A 2MBRA 3PM9A 4PYTA 1JRPA 2W55A 2OAIA 1N61C 5HQXA 2Q85A 4DNSA 3FW8A 3FW9A 4BBYA 3NS1B 3TSJA 2QPMA 1VDVA 5AE3A 3W8ZA 5FXEA 5FXFA 3NVVB 5G5HB 3D2JA 2RK5A 4MLAA 1AHZA 3W8XA 3B9JB 1HSKA 2Q4WA 4JB1A 3LAEA 4OALA 1WVEA 1JROA 1N5XA 2BVGA 1FO4A 2YVSA 2GQTA 1N63C 1VAOA 1QLUA 4ZOHB 2VAOA 4PWCA 3S1DA 1ZR6A 1N5WC 1AHVA 4XLOA 1W1RA 2O3GA 5ADZA 2VFRA 3GSYA 3S1CA 5HHZA 2W3RA 4JAYA 5D79A 3JS8A 3AMZA 3EUB3 3HRDC 4ML8A 2P4PA 2E3TA 5G5GB 1WVFA 2PLSA 5FXDA 3W8WA 4PWBA 3SR6B 5HMRA 4EC3A 4BCAA 2VFUA 1DZNA 4PVKA 3NRZB 2P13A 3D2HA 4BC7A 2AXRA 3BW7A 3S1FA 1E0YA 2W3SA 1MBBA 1W1JA 3LLBA 2EXRA 3FW7A 2QKNA 1W1QA 3TX1A 3C0PA 3DEDA 1SB3B 2BVFA 2VFTA 1E8FA 3TSHA 1W1LA 1W1MA 2BVHA 1W1KA 2GQUA 1V97A 3AN1A 2W54A 3VTEA 1RM6B 2PLIA 5FXPA 3NVYB 1T3QC 3KJMA 1N60C 2NQWA 4PVHA 1UXYA 3D2DA 4O95A 1DIIA 3NVZB 2P3HA 4PVEA 2R2ZA 5AE1A 1AHUA 1WYGA 1N62C 2R8DA 3DQ0A 2VFVA 1ZXIC 3AM9A 4HG0A 1DIQA 1FIQB 3I99A 3NVWB 3S1EA 1F0XA 4PVJA 5AE2A
chains in the Genus database with same CATH superfamily
1FFVC 1MBTA 1E8GA 4UD8A 1QLTA 3ETRB 2VFSA 1W1SA 4BC9A 2Y08A 1W1OA 2I0KA 4PZFA 1E8HA 1FFUC 3FWAA 1I19A 2MBRA 3PM9A 4PYTA 1JRPA 2W55A 2OAIA 1N61C 5HQXA 2Q85A 4DNSA 3FW8A 3FW9A 4BBYA 3NS1B 3TSJA 2QPMA 1VDVA 5AE3A 3W8ZA 5FXEA 5FXFA 3NVVB 5G5HB 3D2JA 2RK5A 5L6GA 4MLAA 3RJAA 1AHZA 3W8XA 3B9JB 1HSKA 2Q4WA 4JB1A 3LAEA 4OALA 3HSUA 1WVEA 1JROA 1N5XA 2BVGA 3PQBA 1FO4A 2YVSA 2GQTA 1N63C 1VAOA 1QLUA 3RJ8A 4ZOHB 5I1WA 2VAOA 4PWCA 3S1DA 1ZR6A 1N5WC 1AHVA 4XLOA 1W1RA 2O3GA 2WDWA 5ADZA 2VFRA 2Y3SA 3GSYA 3S1CA 5HHZA 2W3RA 4JAYA 5D79A 3POPA 3JS8A 3AMZA 3EUB3 3HRDC 4ML8A 2P4PA 2E3TA 5G5GB 1WVFA 2PLSA 5FXDA 3W8WA 4PWBA 3SR6B 5HMRA 4EC3A 4BCAA 2VFUA 5I1VA 1DZNA 4PVKA 3NRZB 2P13A 3D2HA 4BC7A 2AXRA 2Y3RA 3BW7A 3S1FA 2UUVA 1E0YA 2W3SA 1MBBA 5L6FA 1W1JA 3LLBA 2EXRA 3FW7A 2QKNA 1W1QA 3TX1A 3C0PA 3DEDA 1SB3B 2BVFA 2VFTA 1E8FA 3EJBB 3TSHA 1W1LA 1W1MA 2BVHA 1W1KA 2GQUA 1V97A 3AN1A 2W54A 3VTEA 1RM6B 2PLIA 5FXPA 3NVYB 1T3QC 3KJMA 2UUUA 1N60C 2IPIA 5AWVA 2NQWA 4PVHA 1UXYA 3D2DA 4O95A 1DIIA 5K8EA 3NVZB 2P3HA 4PVEA 2R2ZA 5AE1A 1AHUA 1WYGA 2Y4GA 1N62C 2R8DA 3DQ0A 3EJDB 2VFVA 1ZXIC 3AM9A 4HG0A 1DIQA 1FIQB 3I99A 3NVWB 3S1EA 1F0XA 4PVJA 3EJEB 5AE2A
chains in the Genus database with same CATH topology
1FFVC 1MBTA 1E8GA 4UD8A 1QLTA 3ETRB 2VFSA 1W1SA 4BC9A 2Y08A 1W1OA 2I0KA 4PZFA 1E8HA 1FFUC 3FWAA 1I19A 2MBRA 3PM9A 4PYTA 1JRPA 2W55A 2OAIA 1N61C 5HQXA 2Q85A 4DNSA 3FW8A 3FW9A 4BBYA 3NS1B 3TSJA 2QPMA 1VDVA 5AE3A 3W8ZA 5FXEA 5FXFA 3NVVB 5G5HB 3D2JA 2RK5A 5L6GA 4MLAA 3RJAA 1AHZA 3W8XA 3B9JB 1HSKA 2Q4WA 4JB1A 3LAEA 4OALA 3HSUA 1WVEA 1JROA 1N5XA 2BVGA 3PQBA 1FO4A 2YVSA 2GQTA 1N63C 1VAOA 1QLUA 3RJ8A 4ZOHB 5I1WA 2VAOA 4PWCA 3S1DA 1ZR6A 1N5WC 1AHVA 4XLOA 1W1RA 2O3GA 2WDWA 5ADZA 2VFRA 2Y3SA 3GSYA 3S1CA 5HHZA 2W3RA 4JAYA 5D79A 3POPA 3JS8A 3AMZA 3EUB3 3HRDC 4ML8A 2P4PA 2E3TA 5G5GB 1WVFA 2PLSA 5FXDA 3W8WA 4PWBA 3SR6B 5HMRA 4EC3A 4BCAA 2VFUA 5I1VA 1DZNA 4PVKA 3NRZB 2P13A 3D2HA 4BC7A 2AXRA 2Y3RA 3BW7A 3S1FA 2UUVA 1E0YA 2W3SA 1MBBA 5L6FA 1W1JA 3LLBA 2EXRA 3FW7A 2QKNA 1W1QA 3TX1A 3C0PA 3DEDA 1SB3B 2BVFA 2VFTA 1E8FA 3TSHA 1W1LA 1W1MA 2BVHA 1W1KA 2GQUA 1V97A 3AN1A 2W54A 3VTEA 1RM6B 2PLIA 5FXPA 3NVYB 1T3QC 3KJMA 2UUUA 1N60C 2IPIA 5AWVA 2NQWA 4PVHA 1UXYA 3D2DA 4O95A 1DIIA 5K8EA 3NVZB 2P3HA 4PVEA 2R2ZA 5AE1A 1AHUA 1WYGA 2Y4GA 1N62C 2R8DA 3DQ0A 2VFVA 1ZXIC 3AM9A 4HG0A 1DIQA 1FIQB 3I99A 3NVWB 3S1EA 1F0XA 4PVJA 5AE2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FFV C;  1MBT A;  1E8G A;  4UD8 A;  1QLT A;  3ETR B;  2VFS A;  1W1S A;  4BC9 A;  1W1O A;  2I0K A;  4PZF A;  1E8H A;  1FFU C;  3FWA A;  1I19 A;  2MBR A;  3PM9 A;  4PYT A;  1JRP A;  2W55 A;  2OAI A;  1N61 C;  5HQX A;  2Q85 A;  4DNS A;  3FW8 A;  3FW9 A;  4BBY A;  3NS1 B;  3TSJ A;  2QPM A;  1VDV A;  5AE3 A;  3W8Z A;  5FXE A;  5FXF A;  3NVV B;  5G5H B;  3D2J A;  2RK5 A;  4MLA A;  1AHZ A;  3W8X A;  3B9J B;  1HSK A;  2Q4W A;  4JB1 A;  3LAE A;  4OAL A;  1WVE A;  1JRO A;  1N5X A;  2BVG A;  1FO4 A;  2YVS A;  2GQT A;  1N63 C;  1VAO A;  1QLU A;  4ZOH B;  2VAO A;  4PWC A;  3S1D A;  1ZR6 A;  1N5W C;  1AHV A;  4XLO A;  1W1R A;  2O3G A;  5ADZ A;  2VFR A;  3GSY A;  3S1C A;  5HHZ A;  2W3R A;  4JAY A;  5D79 A;  3JS8 A;  3AMZ A;  3EUB 3;  3HRD C;  4ML8 A;  2P4P A;  2E3T A;  5G5G B;  1WVF A;  2PLS A;  5FXD A;  3W8W A;  4PWB A;  3SR6 B;  5HMR A;  4EC3 A;  4BCA A;  2VFU A;  1DZN A;  4PVK A;  3NRZ B;  2P13 A;  3D2H A;  4BC7 A;  2AXR A;  3BW7 A;  3S1F A;  1E0Y A;  2W3S A;  1MBB A;  1W1J A;  3LLB A;  2EXR A;  3FW7 A;  2QKN A;  1W1Q A;  3TX1 A;  3C0P A;  3DED A;  1SB3 B;  2BVF A;  2VFT A;  1E8F A;  3TSH A;  1W1L A;  1W1M A;  2BVH A;  1W1K A;  2GQU A;  1V97 A;  3AN1 A;  2W54 A;  3VTE A;  1RM6 B;  2PLI A;  5FXP A;  3NVY B;  1T3Q C;  3KJM A;  1N60 C;  2NQW A;  4PVH A;  1UXY A;  3D2D A;  4O95 A;  1DII A;  3NVZ B;  2P3H A;  4PVE A;  2R2Z A;  5AE1 A;  1AHU A;  1WYG A;  1N62 C;  2R8D A;  3DQ0 A;  2VFV A;  1ZXI C;  3AM9 A;  4HG0 A;  1DIQ A;  1FIQ B;  3I99 A;  3NVW B;  3S1E A;  1F0X A;  4PVJ A;  5AE2 A; 
#chains in the Genus database with same CATH topology
 1FFV C;  1MBT A;  1E8G A;  4UD8 A;  1QLT A;  3ETR B;  2VFS A;  1W1S A;  4BC9 A;  2Y08 A;  1W1O A;  2I0K A;  4PZF A;  1E8H A;  1FFU C;  3FWA A;  1I19 A;  2MBR A;  3PM9 A;  4PYT A;  1JRP A;  2W55 A;  2OAI A;  1N61 C;  5HQX A;  2Q85 A;  4DNS A;  3FW8 A;  3FW9 A;  4BBY A;  3NS1 B;  3TSJ A;  2QPM A;  1VDV A;  5AE3 A;  3W8Z A;  5FXE A;  5FXF A;  3NVV B;  5G5H B;  3D2J A;  2RK5 A;  5L6G A;  4MLA A;  3RJA A;  1AHZ A;  3W8X A;  3B9J B;  1HSK A;  2Q4W A;  4JB1 A;  3LAE A;  4OAL A;  3HSU A;  1WVE A;  1JRO A;  1N5X A;  2BVG A;  3PQB A;  1FO4 A;  2YVS A;  2GQT A;  1N63 C;  1VAO A;  1QLU A;  3RJ8 A;  4ZOH B;  5I1W A;  2VAO A;  4PWC A;  3S1D A;  1ZR6 A;  1N5W C;  1AHV A;  4XLO A;  1W1R A;  2O3G A;  2WDW A;  5ADZ A;  2VFR A;  2Y3S A;  3GSY A;  3S1C A;  5HHZ A;  2W3R A;  4JAY A;  5D79 A;  3POP A;  3JS8 A;  3AMZ A;  3EUB 3;  3HRD C;  4ML8 A;  2P4P A;  2E3T A;  5G5G B;  1WVF A;  2PLS A;  5FXD A;  3W8W A;  4PWB A;  3SR6 B;  5HMR A;  4EC3 A;  4BCA A;  2VFU A;  5I1V A;  1DZN A;  4PVK A;  3NRZ B;  2P13 A;  3D2H A;  4BC7 A;  2AXR A;  2Y3R A;  3BW7 A;  3S1F A;  2UUV A;  1E0Y A;  2W3S A;  1MBB A;  5L6F A;  1W1J A;  3LLB A;  2EXR A;  3FW7 A;  2QKN A;  1W1Q A;  3TX1 A;  3C0P A;  3DED A;  1SB3 B;  2BVF A;  2VFT A;  1E8F A;  3EJB B;  3TSH A;  1W1L A;  1W1M A;  2BVH A;  1W1K A;  2GQU A;  1V97 A;  3AN1 A;  2W54 A;  3VTE A;  1RM6 B;  2PLI A;  5FXP A;  3NVY B;  1T3Q C;  3KJM A;  2UUU A;  1N60 C;  2IPI A;  5AWV A;  2NQW A;  4PVH A;  1UXY A;  3D2D A;  4O95 A;  1DII A;  5K8E A;  3NVZ B;  2P3H A;  4PVE A;  2R2Z A;  5AE1 A;  1AHU A;  1WYG A;  2Y4G A;  1N62 C;  2R8D A;  3DQ0 A;  3EJD B;  2VFV A;  1ZXI C;  3AM9 A;  4HG0 A;  1DIQ A;  1FIQ B;  3I99 A;  3NVW B;  3S1E A;  1F0X A;  4PVJ A;  3EJE B;  5AE2 A; 
#chains in the Genus database with same CATH homology
 1FFV C;  1MBT A;  1E8G A;  4UD8 A;  1QLT A;  3ETR B;  2VFS A;  1W1S A;  4BC9 A;  2Y08 A;  1W1O A;  2I0K A;  4PZF A;  1E8H A;  1FFU C;  3FWA A;  1I19 A;  2MBR A;  3PM9 A;  4PYT A;  1JRP A;  2W55 A;  2OAI A;  1N61 C;  5HQX A;  2Q85 A;  4DNS A;  3FW8 A;  3FW9 A;  4BBY A;  3NS1 B;  3TSJ A;  2QPM A;  1VDV A;  5AE3 A;  3W8Z A;  5FXE A;  5FXF A;  3NVV B;  5G5H B;  3D2J A;  2RK5 A;  5L6G A;  4MLA A;  3RJA A;  1AHZ A;  3W8X A;  3B9J B;  1HSK A;  2Q4W A;  4JB1 A;  3LAE A;  4OAL A;  3HSU A;  1WVE A;  1JRO A;  1N5X A;  2BVG A;  3PQB A;  1FO4 A;  2YVS A;  2GQT A;  1N63 C;  1VAO A;  1QLU A;  3RJ8 A;  4ZOH B;  5I1W A;  2VAO A;  4PWC A;  3S1D A;  1ZR6 A;  1N5W C;  1AHV A;  4XLO A;  1W1R A;  2O3G A;  2WDW A;  5ADZ A;  2VFR A;  2Y3S A;  3GSY A;  3S1C A;  5HHZ A;  2W3R A;  4JAY A;  5D79 A;  3POP A;  3JS8 A;  3AMZ A;  3EUB 3;  3HRD C;  4ML8 A;  2P4P A;  2E3T A;  5G5G B;  1WVF A;  2PLS A;  5FXD A;  3W8W A;  4PWB A;  3SR6 B;  5HMR A;  4EC3 A;  4BCA A;  2VFU A;  5I1V A;  1DZN A;  4PVK A;  3NRZ B;  2P13 A;  3D2H A;  4BC7 A;  2AXR A;  2Y3R A;  3BW7 A;  3S1F A;  2UUV A;  1E0Y A;  2W3S A;  1MBB A;  5L6F A;  1W1J A;  3LLB A;  2EXR A;  3FW7 A;  2QKN A;  1W1Q A;  3TX1 A;  3C0P A;  3DED A;  1SB3 B;  2BVF A;  2VFT A;  1E8F A;  3TSH A;  1W1L A;  1W1M A;  2BVH A;  1W1K A;  2GQU A;  1V97 A;  3AN1 A;  2W54 A;  3VTE A;  1RM6 B;  2PLI A;  5FXP A;  3NVY B;  1T3Q C;  3KJM A;  2UUU A;  1N60 C;  2IPI A;  5AWV A;  2NQW A;  4PVH A;  1UXY A;  3D2D A;  4O95 A;  1DII A;  5K8E A;  3NVZ B;  2P3H A;  4PVE A;  2R2Z A;  5AE1 A;  1AHU A;  1WYG A;  2Y4G A;  1N62 C;  2R8D A;  3DQ0 A;  2VFV A;  1ZXI C;  3AM9 A;  4HG0 A;  1DIQ A;  1FIQ B;  3I99 A;  3NVW B;  3S1E A;  1F0X A;  4PVJ A;  5AE2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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