3S1CA

Maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
total genus 163
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1cA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1cA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1cA03
1WVEA 3BW7A 1W1SA 1WVFA 1ZR6A 5ADZA 2BVFA 2OAIA 2W3RA 3NVWB 1JRPA 3W8WA 3D2HA 3C0PA 3W8ZA 1AHZA 5FXEA 1DIIA 5HQXA 2W54A 3PM9A 1W1KA 3NS1B 1N5WC 2VFVA 2VFRA 3AM9A 1ZXIC 1W1RA 2Q85A 3LAEA 3TX1A 3S1EA 3HRDC 1VDVA 3AN1A 1QLTA 3TSJA 1FO4A 2BVHA 1N63C 3D2JA 1N60C 1N5XA 4PVKA 5AE2A 4PVEA 3FW7A 5FXPA 1AHUA 1QLUA 1RM6B 4ZOHB 2RK5A 3GSYA 1N62C 1F0XA 1E8FA 3FWAA 3DEDA 5FXFA 1W1MA 1FIQB 1V97A 2W55A 4JAYA 3LLBA 3NVZB 2W3SA 4XLOA 3NVYB 1W1JA 5G5GB 2I0KA 3I99A 3ETRB 2O3GA 4EC3A 2PLIA 3NRZB 1E8GA 4O95A 2P13A 2VFUA 4PVHA 3W8XA 4BC9A 1E0YA 2NQWA 4PWCA 3KJMA 5HHZA 5AE3A 2BVGA 1FFVC 3D2DA 3B9JB 4JB1A 1W1OA 4PVJA 2EXRA 4DNSA 1AHVA 1JROA 4HG0A 2R8DA 2VAOA 2Q4WA 1E8HA 3S1CA 2YVSA 1T3QC 5HMRA 4PYTA 1DIQA 2P3HA 3JS8A 1N61C 1HSKA 3VTEA 3FW9A 3FW8A 4BC7A 2MBRA 2PLSA 1DZNA 2GQTA 4ML8A 4PZFA 4MLAA 1I19A 3SR6B 1UXYA 2QKNA 3TSHA 4PWBA 3S1DA 2E3TA 2VFSA 3EUB3 1W1QA 2AXRA 4BCAA 4OALA 1MBBA 1FFUC 3AMZA 5AE1A 4UD8A 5G5HB 3S1FA 3NVVB 1WYGA 2GQUA 2QPMA 1MBTA 4BBYA 2VFTA 5FXDA 1SB3B 1VAOA 1W1LA 5D79A 2R2ZA 3DQ0A 2P4PA
chains in the Genus database with same CATH superfamily
1WVEA 3BW7A 3EJEB 1W1SA 1WVFA 1ZR6A 5ADZA 2BVFA 2OAIA 2W3RA 3NVWB 1JRPA 3W8WA 3D2HA 3C0PA 2Y4GA 3W8ZA 3EJDB 1AHZA 5FXEA 1DIIA 5HQXA 2W54A 2UUVA 3PM9A 1W1KA 3NS1B 2Y3RA 1N5WC 2VFVA 2VFRA 3AM9A 1ZXIC 5L6FA 2Y08A 1W1RA 2Q85A 2Y3SA 3LAEA 3TX1A 3S1EA 3HRDC 1VDVA 3AN1A 1QLTA 3TSJA 1FO4A 2BVHA 1N63C 3D2JA 1N60C 1N5XA 4PVKA 5AE2A 4PVEA 3FW7A 3EJBB 5FXPA 1AHUA 1QLUA 1RM6B 4ZOHB 3POPA 2RK5A 3GSYA 2UUUA 3RJAA 1N62C 1F0XA 1E8FA 3FWAA 3PQBA 3DEDA 5FXFA 1W1MA 1FIQB 1V97A 2W55A 4JAYA 3LLBA 3NVZB 2W3SA 4XLOA 5I1WA 3NVYB 1W1JA 5G5GB 2I0KA 3I99A 3ETRB 2O3GA 4EC3A 2PLIA 3NRZB 1E8GA 4O95A 2P13A 2VFUA 4PVHA 3W8XA 4BC9A 1E0YA 2NQWA 4PWCA 3KJMA 5HHZA 5AE3A 5I1VA 2BVGA 1FFVC 3D2DA 3B9JB 4JB1A 1W1OA 4PVJA 2EXRA 2IPIA 4DNSA 1AHVA 1JROA 4HG0A 2R8DA 2VAOA 2Q4WA 1E8HA 3S1CA 2YVSA 1T3QC 5HMRA 4PYTA 1DIQA 2P3HA 3HSUA 3JS8A 3RJ8A 1N61C 1HSKA 3VTEA 3FW9A 3FW8A 4BC7A 2MBRA 2PLSA 1DZNA 2GQTA 4ML8A 4PZFA 4MLAA 1I19A 3SR6B 1UXYA 2QKNA 3TSHA 4PWBA 3S1DA 2E3TA 2VFSA 3EUB3 1W1QA 2AXRA 4BCAA 4OALA 5L6GA 1MBBA 1FFUC 3AMZA 5AE1A 4UD8A 2WDWA 5G5HB 3S1FA 3NVVB 1WYGA 2GQUA 2QPMA 1MBTA 4BBYA 2VFTA 5FXDA 1SB3B 1VAOA 1W1LA 5D79A 2R2ZA 5AWVA 5K8EA 3DQ0A 2P4PA
chains in the Genus database with same CATH topology
1WVEA 3BW7A 1W1SA 1WVFA 1ZR6A 5ADZA 2BVFA 2OAIA 2W3RA 3NVWB 1JRPA 3W8WA 3D2HA 3C0PA 2Y4GA 3W8ZA 1AHZA 5FXEA 1DIIA 5HQXA 2W54A 2UUVA 3PM9A 1W1KA 3NS1B 2Y3RA 1N5WC 2VFVA 2VFRA 3AM9A 1ZXIC 5L6FA 2Y08A 1W1RA 2Q85A 2Y3SA 3LAEA 3TX1A 3S1EA 3HRDC 1VDVA 3AN1A 1QLTA 3TSJA 1FO4A 2BVHA 1N63C 3D2JA 1N60C 1N5XA 4PVKA 5AE2A 4PVEA 3FW7A 5FXPA 1AHUA 1QLUA 1RM6B 4ZOHB 3POPA 2RK5A 3GSYA 2UUUA 3RJAA 1N62C 1F0XA 1E8FA 3FWAA 3PQBA 3DEDA 5FXFA 1W1MA 1FIQB 1V97A 2W55A 4JAYA 3LLBA 3NVZB 2W3SA 4XLOA 5I1WA 3NVYB 1W1JA 5G5GB 2I0KA 3I99A 3ETRB 2O3GA 4EC3A 2PLIA 3NRZB 1E8GA 4O95A 2P13A 2VFUA 4PVHA 3W8XA 4BC9A 1E0YA 2NQWA 4PWCA 3KJMA 5HHZA 5AE3A 5I1VA 2BVGA 1FFVC 3D2DA 3B9JB 4JB1A 1W1OA 4PVJA 2EXRA 2IPIA 4DNSA 1AHVA 1JROA 4HG0A 2R8DA 2VAOA 2Q4WA 1E8HA 3S1CA 2YVSA 1T3QC 5HMRA 4PYTA 1DIQA 2P3HA 3HSUA 3JS8A 3RJ8A 1N61C 1HSKA 3VTEA 3FW9A 3FW8A 4BC7A 2MBRA 2PLSA 1DZNA 2GQTA 4ML8A 4PZFA 4MLAA 1I19A 3SR6B 1UXYA 2QKNA 3TSHA 4PWBA 3S1DA 2E3TA 2VFSA 3EUB3 1W1QA 2AXRA 4BCAA 4OALA 5L6GA 1MBBA 1FFUC 3AMZA 5AE1A 4UD8A 2WDWA 5G5HB 3S1FA 3NVVB 1WYGA 2GQUA 2QPMA 1MBTA 4BBYA 2VFTA 5FXDA 1SB3B 1VAOA 1W1LA 5D79A 2R2ZA 5AWVA 5K8EA 3DQ0A 2P4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WVE A;  3BW7 A;  1W1S A;  1WVF A;  1ZR6 A;  5ADZ A;  2BVF A;  2OAI A;  2W3R A;  3NVW B;  1JRP A;  3W8W A;  3D2H A;  3C0P A;  3W8Z A;  1AHZ A;  5FXE A;  1DII A;  5HQX A;  2W54 A;  3PM9 A;  1W1K A;  3NS1 B;  1N5W C;  2VFV A;  2VFR A;  3AM9 A;  1ZXI C;  1W1R A;  2Q85 A;  3LAE A;  3TX1 A;  3S1E A;  3HRD C;  1VDV A;  3AN1 A;  1QLT A;  3TSJ A;  1FO4 A;  2BVH A;  1N63 C;  3D2J A;  1N60 C;  1N5X A;  4PVK A;  5AE2 A;  4PVE A;  3FW7 A;  5FXP A;  1AHU A;  1QLU A;  1RM6 B;  4ZOH B;  2RK5 A;  3GSY A;  1N62 C;  1F0X A;  1E8F A;  3FWA A;  3DED A;  5FXF A;  1W1M A;  1FIQ B;  1V97 A;  2W55 A;  4JAY A;  3LLB A;  3NVZ B;  2W3S A;  4XLO A;  3NVY B;  1W1J A;  5G5G B;  2I0K A;  3I99 A;  3ETR B;  2O3G A;  4EC3 A;  2PLI A;  3NRZ B;  1E8G A;  4O95 A;  2P13 A;  2VFU A;  4PVH A;  3W8X A;  4BC9 A;  1E0Y A;  2NQW A;  4PWC A;  3KJM A;  5HHZ A;  5AE3 A;  2BVG A;  1FFV C;  3D2D A;  3B9J B;  4JB1 A;  1W1O A;  4PVJ A;  2EXR A;  4DNS A;  1AHV A;  1JRO A;  4HG0 A;  2R8D A;  2VAO A;  2Q4W A;  1E8H A;  3S1C A;  2YVS A;  1T3Q C;  5HMR A;  4PYT A;  1DIQ A;  2P3H A;  3JS8 A;  1N61 C;  1HSK A;  3VTE A;  3FW9 A;  3FW8 A;  4BC7 A;  2MBR A;  2PLS A;  1DZN A;  2GQT A;  4ML8 A;  4PZF A;  4MLA A;  1I19 A;  3SR6 B;  1UXY A;  2QKN A;  3TSH A;  4PWB A;  3S1D A;  2E3T A;  2VFS A;  3EUB 3;  1W1Q A;  2AXR A;  4BCA A;  4OAL A;  1MBB A;  1FFU C;  3AMZ A;  5AE1 A;  4UD8 A;  5G5H B;  3S1F A;  3NVV B;  1WYG A;  2GQU A;  2QPM A;  1MBT A;  4BBY A;  2VFT A;  5FXD A;  1SB3 B;  1VAO A;  1W1L A;  5D79 A;  2R2Z A;  3DQ0 A;  2P4P A; 
#chains in the Genus database with same CATH topology
 1WVE A;  3BW7 A;  3EJE B;  1W1S A;  1WVF A;  1ZR6 A;  5ADZ A;  2BVF A;  2OAI A;  2W3R A;  3NVW B;  1JRP A;  3W8W A;  3D2H A;  3C0P A;  2Y4G A;  3W8Z A;  3EJD B;  1AHZ A;  5FXE A;  1DII A;  5HQX A;  2W54 A;  2UUV A;  3PM9 A;  1W1K A;  3NS1 B;  2Y3R A;  1N5W C;  2VFV A;  2VFR A;  3AM9 A;  1ZXI C;  5L6F A;  2Y08 A;  1W1R A;  2Q85 A;  2Y3S A;  3LAE A;  3TX1 A;  3S1E A;  3HRD C;  1VDV A;  3AN1 A;  1QLT A;  3TSJ A;  1FO4 A;  2BVH A;  1N63 C;  3D2J A;  1N60 C;  1N5X A;  4PVK A;  5AE2 A;  4PVE A;  3FW7 A;  3EJB B;  5FXP A;  1AHU A;  1QLU A;  1RM6 B;  4ZOH B;  3POP A;  2RK5 A;  3GSY A;  2UUU A;  3RJA A;  1N62 C;  1F0X A;  1E8F A;  3FWA A;  3PQB A;  3DED A;  5FXF A;  1W1M A;  1FIQ B;  1V97 A;  2W55 A;  4JAY A;  3LLB A;  3NVZ B;  2W3S A;  4XLO A;  5I1W A;  3NVY B;  1W1J A;  5G5G B;  2I0K A;  3I99 A;  3ETR B;  2O3G A;  4EC3 A;  2PLI A;  3NRZ B;  1E8G A;  4O95 A;  2P13 A;  2VFU A;  4PVH A;  3W8X A;  4BC9 A;  1E0Y A;  2NQW A;  4PWC A;  3KJM A;  5HHZ A;  5AE3 A;  5I1V A;  2BVG A;  1FFV C;  3D2D A;  3B9J B;  4JB1 A;  1W1O A;  4PVJ A;  2EXR A;  2IPI A;  4DNS A;  1AHV A;  1JRO A;  4HG0 A;  2R8D A;  2VAO A;  2Q4W A;  1E8H A;  3S1C A;  2YVS A;  1T3Q C;  5HMR A;  4PYT A;  1DIQ A;  2P3H A;  3HSU A;  3JS8 A;  3RJ8 A;  1N61 C;  1HSK A;  3VTE A;  3FW9 A;  3FW8 A;  4BC7 A;  2MBR A;  2PLS A;  1DZN A;  2GQT A;  4ML8 A;  4PZF A;  4MLA A;  1I19 A;  3SR6 B;  1UXY A;  2QKN A;  3TSH A;  4PWB A;  3S1D A;  2E3T A;  2VFS A;  3EUB 3;  1W1Q A;  2AXR A;  4BCA A;  4OAL A;  5L6G A;  1MBB A;  1FFU C;  3AMZ A;  5AE1 A;  4UD8 A;  2WDW A;  5G5H B;  3S1F A;  3NVV B;  1WYG A;  2GQU A;  2QPM A;  1MBT A;  4BBY A;  2VFT A;  5FXD A;  1SB3 B;  1VAO A;  1W1L A;  5D79 A;  2R2Z A;  5AWV A;  5K8E A;  3DQ0 A;  2P4P A; 
#chains in the Genus database with same CATH homology
 1WVE A;  3BW7 A;  1W1S A;  1WVF A;  1ZR6 A;  5ADZ A;  2BVF A;  2OAI A;  2W3R A;  3NVW B;  1JRP A;  3W8W A;  3D2H A;  3C0P A;  2Y4G A;  3W8Z A;  1AHZ A;  5FXE A;  1DII A;  5HQX A;  2W54 A;  2UUV A;  3PM9 A;  1W1K A;  3NS1 B;  2Y3R A;  1N5W C;  2VFV A;  2VFR A;  3AM9 A;  1ZXI C;  5L6F A;  2Y08 A;  1W1R A;  2Q85 A;  2Y3S A;  3LAE A;  3TX1 A;  3S1E A;  3HRD C;  1VDV A;  3AN1 A;  1QLT A;  3TSJ A;  1FO4 A;  2BVH A;  1N63 C;  3D2J A;  1N60 C;  1N5X A;  4PVK A;  5AE2 A;  4PVE A;  3FW7 A;  5FXP A;  1AHU A;  1QLU A;  1RM6 B;  4ZOH B;  3POP A;  2RK5 A;  3GSY A;  2UUU A;  3RJA A;  1N62 C;  1F0X A;  1E8F A;  3FWA A;  3PQB A;  3DED A;  5FXF A;  1W1M A;  1FIQ B;  1V97 A;  2W55 A;  4JAY A;  3LLB A;  3NVZ B;  2W3S A;  4XLO A;  5I1W A;  3NVY B;  1W1J A;  5G5G B;  2I0K A;  3I99 A;  3ETR B;  2O3G A;  4EC3 A;  2PLI A;  3NRZ B;  1E8G A;  4O95 A;  2P13 A;  2VFU A;  4PVH A;  3W8X A;  4BC9 A;  1E0Y A;  2NQW A;  4PWC A;  3KJM A;  5HHZ A;  5AE3 A;  5I1V A;  2BVG A;  1FFV C;  3D2D A;  3B9J B;  4JB1 A;  1W1O A;  4PVJ A;  2EXR A;  2IPI A;  4DNS A;  1AHV A;  1JRO A;  4HG0 A;  2R8D A;  2VAO A;  2Q4W A;  1E8H A;  3S1C A;  2YVS A;  1T3Q C;  5HMR A;  4PYT A;  1DIQ A;  2P3H A;  3HSU A;  3JS8 A;  3RJ8 A;  1N61 C;  1HSK A;  3VTE A;  3FW9 A;  3FW8 A;  4BC7 A;  2MBR A;  2PLS A;  1DZN A;  2GQT A;  4ML8 A;  4PZF A;  4MLA A;  1I19 A;  3SR6 B;  1UXY A;  2QKN A;  3TSH A;  4PWB A;  3S1D A;  2E3T A;  2VFS A;  3EUB 3;  1W1Q A;  2AXR A;  4BCA A;  4OAL A;  5L6G A;  1MBB A;  1FFU C;  3AMZ A;  5AE1 A;  4UD8 A;  2WDW A;  5G5H B;  3S1F A;  3NVV B;  1WYG A;  2GQU A;  2QPM A;  1MBT A;  4BBY A;  2VFT A;  5FXD A;  1SB3 B;  1VAO A;  1W1L A;  5D79 A;  2R2Z A;  5AWV A;  5K8E A;  3DQ0 A;  2P4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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