3S1CA

Maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 163
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1cA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1cA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1cA03
2GQUA 2VFTA 2Q85A 1QLUA 4PVKA 3FW8A 1DIIA 1W1JA 3D2DA 3S1FA 2O3GA 2OAIA 2BVHA 2E3TA 2VFUA 3LLBA 3LAEA 2P3HA 2AXRA 5HHZA 1RM6B 4BC7A 3HRDC 3B9JB 1JROA 3NS1B 3TSHA 3AM9A 2YVSA 4DNSA 2W55A 1JRPA 3FWAA 1ZXIC 3S1DA 1DZNA 3TSJA 1ZR6A 3KJMA 3JS8A 2I0KA 1MBBA 2VAOA 1E8FA 4BCAA 2PLSA 1T3QC 5G5HB 2W54A 5AE1A 4PVEA 3C0PA 1HSKA 3I99A 4UD8A 1VAOA 1AHUA 1W1MA 5D79A 2P4PA 4PVHA 3NVWB 4JAYA 4O95A 1W1QA 4PWCA 4BC9A 1FFVC 1AHZA 1DIQA 1QLTA 4EC3A 4OALA 4PYTA 1FO4A 1VDVA 1W1LA 4ZOHB 4JB1A 1SB3B 1AHVA 3S1EA 1E8HA 2NQWA 1WVEA 5HQXA 3D2HA 5FXEA 3DQ0A 5ADZA 2RK5A 4ML8A 5HMRA 1FFUC 2BVFA 2BVGA 4PVJA 4HG0A 2R2ZA 1W1RA 3PM9A 3DEDA 4XLOA 1W1OA 2GQTA 4BBYA 3VTEA 2MBRA 3NVVB 2QPMA 3NVZB 1N60C 1E8GA 1WYGA 2W3RA 1N62C 1WVFA 2R8DA 4PWBA 5AE3A 2W3SA 3D2JA 1N5WC 5FXDA 5FXPA 2P13A 3FW9A 2Q4WA 2VFVA 3W8XA 3FW7A 3W8WA 1MBTA 2QKNA 3SR6B 3S1CA 3ETRB 2VFSA 4PZFA 1UXYA 3TX1A 1E0YA 1N61C 1W1KA 3AN1A 2PLIA 1W1SA 1V97A 3EUB3 3AMZA 1FIQB 5G5GB 3W8ZA 5AE2A 2EXRA 1F0XA 3NRZB 5FXFA 3GSYA 1I19A 4MLAA 3NVYB 3BW7A 2VFRA 1N5XA 1N63C
chains in the Genus database with same CATH superfamily
2GQUA 2VFTA 2Q85A 1QLUA 4PVKA 3FW8A 3PQBA 1DIIA 1W1JA 3D2DA 3S1FA 2O3GA 2Y3SA 5I1WA 2OAIA 2BVHA 2E3TA 2VFUA 3LLBA 3LAEA 2P3HA 2AXRA 5AWVA 5HHZA 1RM6B 5K8EA 4BC7A 3HRDC 3B9JB 1JROA 3NS1B 3TSHA 3AM9A 2YVSA 4DNSA 2W55A 1JRPA 3FWAA 1ZXIC 3S1DA 3HSUA 1DZNA 3TSJA 1ZR6A 3KJMA 3JS8A 2I0KA 1MBBA 2UUUA 2VAOA 1E8FA 4BCAA 2PLSA 1T3QC 5G5HB 2Y4GA 2W54A 5AE1A 4PVEA 3C0PA 1HSKA 2WDWA 3I99A 4UD8A 1VAOA 1AHUA 1W1MA 5D79A 2P4PA 4PVHA 5L6GA 3NVWB 4JAYA 4O95A 5L6FA 1W1QA 4PWCA 4BC9A 1FFVC 1AHZA 1DIQA 1QLTA 4EC3A 4OALA 4PYTA 1FO4A 3EJEB 1VDVA 1W1LA 4ZOHB 3EJBB 4JB1A 2UUVA 1SB3B 1AHVA 3S1EA 1E8HA 2NQWA 1WVEA 5HQXA 3D2HA 5FXEA 3DQ0A 5ADZA 2RK5A 4ML8A 5HMRA 1FFUC 2BVFA 2BVGA 4PVJA 4HG0A 2R2ZA 1W1RA 3PM9A 3DEDA 4XLOA 1W1OA 2GQTA 4BBYA 3VTEA 2MBRA 3NVVB 2QPMA 3NVZB 1N60C 1E8GA 1WYGA 2W3RA 1N62C 1WVFA 2R8DA 4PWBA 5AE3A 2W3SA 3D2JA 1N5WC 5FXDA 5FXPA 2P13A 3FW9A 2Q4WA 2VFVA 3W8XA 3FW7A 3W8WA 1MBTA 2QKNA 3SR6B 3RJAA 3S1CA 3ETRB 2VFSA 4PZFA 1UXYA 3TX1A 5I1VA 2Y08A 1E0YA 2IPIA 1N61C 1W1KA 3AN1A 2PLIA 1W1SA 1V97A 3EUB3 3POPA 3AMZA 1FIQB 2Y3RA 5G5GB 3W8ZA 5AE2A 2EXRA 1F0XA 3NRZB 5FXFA 3GSYA 3EJDB 1I19A 4MLAA 3NVYB 3BW7A 3RJ8A 2VFRA 1N5XA 1N63C
chains in the Genus database with same CATH topology
2GQUA 2VFTA 2Q85A 1QLUA 4PVKA 3FW8A 3PQBA 1DIIA 1W1JA 3D2DA 3S1FA 2O3GA 2Y3SA 5I1WA 2OAIA 2BVHA 2E3TA 2VFUA 3LLBA 3LAEA 2P3HA 2AXRA 5AWVA 5HHZA 1RM6B 5K8EA 4BC7A 3HRDC 3B9JB 1JROA 3NS1B 3TSHA 3AM9A 2YVSA 4DNSA 2W55A 1JRPA 3FWAA 1ZXIC 3S1DA 3HSUA 1DZNA 3TSJA 1ZR6A 3KJMA 3JS8A 2I0KA 1MBBA 2UUUA 2VAOA 1E8FA 4BCAA 2PLSA 1T3QC 5G5HB 2Y4GA 2W54A 5AE1A 4PVEA 3C0PA 1HSKA 2WDWA 3I99A 4UD8A 1VAOA 1AHUA 1W1MA 5D79A 2P4PA 4PVHA 5L6GA 3NVWB 4JAYA 4O95A 5L6FA 1W1QA 4PWCA 4BC9A 1FFVC 1AHZA 1DIQA 1QLTA 4EC3A 4OALA 4PYTA 1FO4A 1VDVA 1W1LA 4ZOHB 4JB1A 2UUVA 1SB3B 1AHVA 3S1EA 1E8HA 2NQWA 1WVEA 5HQXA 3D2HA 5FXEA 3DQ0A 5ADZA 2RK5A 4ML8A 5HMRA 1FFUC 2BVFA 2BVGA 4PVJA 4HG0A 2R2ZA 1W1RA 3PM9A 3DEDA 4XLOA 1W1OA 2GQTA 4BBYA 3VTEA 2MBRA 3NVVB 2QPMA 3NVZB 1N60C 1E8GA 1WYGA 2W3RA 1N62C 1WVFA 2R8DA 4PWBA 5AE3A 2W3SA 3D2JA 1N5WC 5FXDA 5FXPA 2P13A 3FW9A 2Q4WA 2VFVA 3W8XA 3FW7A 3W8WA 1MBTA 2QKNA 3SR6B 3RJAA 3S1CA 3ETRB 2VFSA 4PZFA 1UXYA 3TX1A 5I1VA 2Y08A 1E0YA 2IPIA 1N61C 1W1KA 3AN1A 2PLIA 1W1SA 1V97A 3EUB3 3POPA 3AMZA 1FIQB 2Y3RA 5G5GB 3W8ZA 5AE2A 2EXRA 1F0XA 3NRZB 5FXFA 3GSYA 1I19A 4MLAA 3NVYB 3BW7A 3RJ8A 2VFRA 1N5XA 1N63C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GQU A;  2VFT A;  2Q85 A;  1QLU A;  4PVK A;  3FW8 A;  1DII A;  1W1J A;  3D2D A;  3S1F A;  2O3G A;  2OAI A;  2BVH A;  2E3T A;  2VFU A;  3LLB A;  3LAE A;  2P3H A;  2AXR A;  5HHZ A;  1RM6 B;  4BC7 A;  3HRD C;  3B9J B;  1JRO A;  3NS1 B;  3TSH A;  3AM9 A;  2YVS A;  4DNS A;  2W55 A;  1JRP A;  3FWA A;  1ZXI C;  3S1D A;  1DZN A;  3TSJ A;  1ZR6 A;  3KJM A;  3JS8 A;  2I0K A;  1MBB A;  2VAO A;  1E8F A;  4BCA A;  2PLS A;  1T3Q C;  5G5H B;  2W54 A;  5AE1 A;  4PVE A;  3C0P A;  1HSK A;  3I99 A;  4UD8 A;  1VAO A;  1AHU A;  1W1M A;  5D79 A;  2P4P A;  4PVH A;  3NVW B;  4JAY A;  4O95 A;  1W1Q A;  4PWC A;  4BC9 A;  1FFV C;  1AHZ A;  1DIQ A;  1QLT A;  4EC3 A;  4OAL A;  4PYT A;  1FO4 A;  1VDV A;  1W1L A;  4ZOH B;  4JB1 A;  1SB3 B;  1AHV A;  3S1E A;  1E8H A;  2NQW A;  1WVE A;  5HQX A;  3D2H A;  5FXE A;  3DQ0 A;  5ADZ A;  2RK5 A;  4ML8 A;  5HMR A;  1FFU C;  2BVF A;  2BVG A;  4PVJ A;  4HG0 A;  2R2Z A;  1W1R A;  3PM9 A;  3DED A;  4XLO A;  1W1O A;  2GQT A;  4BBY A;  3VTE A;  2MBR A;  3NVV B;  2QPM A;  3NVZ B;  1N60 C;  1E8G A;  1WYG A;  2W3R A;  1N62 C;  1WVF A;  2R8D A;  4PWB A;  5AE3 A;  2W3S A;  3D2J A;  1N5W C;  5FXD A;  5FXP A;  2P13 A;  3FW9 A;  2Q4W A;  2VFV A;  3W8X A;  3FW7 A;  3W8W A;  1MBT A;  2QKN A;  3SR6 B;  3S1C A;  3ETR B;  2VFS A;  4PZF A;  1UXY A;  3TX1 A;  1E0Y A;  1N61 C;  1W1K A;  3AN1 A;  2PLI A;  1W1S A;  1V97 A;  3EUB 3;  3AMZ A;  1FIQ B;  5G5G B;  3W8Z A;  5AE2 A;  2EXR A;  1F0X A;  3NRZ B;  5FXF A;  3GSY A;  1I19 A;  4MLA A;  3NVY B;  3BW7 A;  2VFR A;  1N5X A;  1N63 C; 
#chains in the Genus database with same CATH topology
 2GQU A;  2VFT A;  2Q85 A;  1QLU A;  4PVK A;  3FW8 A;  3PQB A;  1DII A;  1W1J A;  3D2D A;  3S1F A;  2O3G A;  2Y3S A;  5I1W A;  2OAI A;  2BVH A;  2E3T A;  2VFU A;  3LLB A;  3LAE A;  2P3H A;  2AXR A;  5AWV A;  5HHZ A;  1RM6 B;  5K8E A;  4BC7 A;  3HRD C;  3B9J B;  1JRO A;  3NS1 B;  3TSH A;  3AM9 A;  2YVS A;  4DNS A;  2W55 A;  1JRP A;  3FWA A;  1ZXI C;  3S1D A;  3HSU A;  1DZN A;  3TSJ A;  1ZR6 A;  3KJM A;  3JS8 A;  2I0K A;  1MBB A;  2UUU A;  2VAO A;  1E8F A;  4BCA A;  2PLS A;  1T3Q C;  5G5H B;  2Y4G A;  2W54 A;  5AE1 A;  4PVE A;  3C0P A;  1HSK A;  2WDW A;  3I99 A;  4UD8 A;  1VAO A;  1AHU A;  1W1M A;  5D79 A;  2P4P A;  4PVH A;  5L6G A;  3NVW B;  4JAY A;  4O95 A;  5L6F A;  1W1Q A;  4PWC A;  4BC9 A;  1FFV C;  1AHZ A;  1DIQ A;  1QLT A;  4EC3 A;  4OAL A;  4PYT A;  1FO4 A;  3EJE B;  1VDV A;  1W1L A;  4ZOH B;  3EJB B;  4JB1 A;  2UUV A;  1SB3 B;  1AHV A;  3S1E A;  1E8H A;  2NQW A;  1WVE A;  5HQX A;  3D2H A;  5FXE A;  3DQ0 A;  5ADZ A;  2RK5 A;  4ML8 A;  5HMR A;  1FFU C;  2BVF A;  2BVG A;  4PVJ A;  4HG0 A;  2R2Z A;  1W1R A;  3PM9 A;  3DED A;  4XLO A;  1W1O A;  2GQT A;  4BBY A;  3VTE A;  2MBR A;  3NVV B;  2QPM A;  3NVZ B;  1N60 C;  1E8G A;  1WYG A;  2W3R A;  1N62 C;  1WVF A;  2R8D A;  4PWB A;  5AE3 A;  2W3S A;  3D2J A;  1N5W C;  5FXD A;  5FXP A;  2P13 A;  3FW9 A;  2Q4W A;  2VFV A;  3W8X A;  3FW7 A;  3W8W A;  1MBT A;  2QKN A;  3SR6 B;  3RJA A;  3S1C A;  3ETR B;  2VFS A;  4PZF A;  1UXY A;  3TX1 A;  5I1V A;  2Y08 A;  1E0Y A;  2IPI A;  1N61 C;  1W1K A;  3AN1 A;  2PLI A;  1W1S A;  1V97 A;  3EUB 3;  3POP A;  3AMZ A;  1FIQ B;  2Y3R A;  5G5G B;  3W8Z A;  5AE2 A;  2EXR A;  1F0X A;  3NRZ B;  5FXF A;  3GSY A;  3EJD B;  1I19 A;  4MLA A;  3NVY B;  3BW7 A;  3RJ8 A;  2VFR A;  1N5X A;  1N63 C; 
#chains in the Genus database with same CATH homology
 2GQU A;  2VFT A;  2Q85 A;  1QLU A;  4PVK A;  3FW8 A;  3PQB A;  1DII A;  1W1J A;  3D2D A;  3S1F A;  2O3G A;  2Y3S A;  5I1W A;  2OAI A;  2BVH A;  2E3T A;  2VFU A;  3LLB A;  3LAE A;  2P3H A;  2AXR A;  5AWV A;  5HHZ A;  1RM6 B;  5K8E A;  4BC7 A;  3HRD C;  3B9J B;  1JRO A;  3NS1 B;  3TSH A;  3AM9 A;  2YVS A;  4DNS A;  2W55 A;  1JRP A;  3FWA A;  1ZXI C;  3S1D A;  3HSU A;  1DZN A;  3TSJ A;  1ZR6 A;  3KJM A;  3JS8 A;  2I0K A;  1MBB A;  2UUU A;  2VAO A;  1E8F A;  4BCA A;  2PLS A;  1T3Q C;  5G5H B;  2Y4G A;  2W54 A;  5AE1 A;  4PVE A;  3C0P A;  1HSK A;  2WDW A;  3I99 A;  4UD8 A;  1VAO A;  1AHU A;  1W1M A;  5D79 A;  2P4P A;  4PVH A;  5L6G A;  3NVW B;  4JAY A;  4O95 A;  5L6F A;  1W1Q A;  4PWC A;  4BC9 A;  1FFV C;  1AHZ A;  1DIQ A;  1QLT A;  4EC3 A;  4OAL A;  4PYT A;  1FO4 A;  1VDV A;  1W1L A;  4ZOH B;  4JB1 A;  2UUV A;  1SB3 B;  1AHV A;  3S1E A;  1E8H A;  2NQW A;  1WVE A;  5HQX A;  3D2H A;  5FXE A;  3DQ0 A;  5ADZ A;  2RK5 A;  4ML8 A;  5HMR A;  1FFU C;  2BVF A;  2BVG A;  4PVJ A;  4HG0 A;  2R2Z A;  1W1R A;  3PM9 A;  3DED A;  4XLO A;  1W1O A;  2GQT A;  4BBY A;  3VTE A;  2MBR A;  3NVV B;  2QPM A;  3NVZ B;  1N60 C;  1E8G A;  1WYG A;  2W3R A;  1N62 C;  1WVF A;  2R8D A;  4PWB A;  5AE3 A;  2W3S A;  3D2J A;  1N5W C;  5FXD A;  5FXP A;  2P13 A;  3FW9 A;  2Q4W A;  2VFV A;  3W8X A;  3FW7 A;  3W8W A;  1MBT A;  2QKN A;  3SR6 B;  3RJA A;  3S1C A;  3ETR B;  2VFS A;  4PZF A;  1UXY A;  3TX1 A;  5I1V A;  2Y08 A;  1E0Y A;  2IPI A;  1N61 C;  1W1K A;  3AN1 A;  2PLI A;  1W1S A;  1V97 A;  3EUB 3;  3POP A;  3AMZ A;  1FIQ B;  2Y3R A;  5G5G B;  3W8Z A;  5AE2 A;  2EXR A;  1F0X A;  3NRZ B;  5FXF A;  3GSY A;  1I19 A;  4MLA A;  3NVY B;  3BW7 A;  3RJ8 A;  2VFR A;  1N5X A;  1N63 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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