1I19A

Crystal structure of cholesterol oxidase from b.sterolicum
Total Genus 179
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
557
structure length
541
Chain Sequence
VAPLPTPPNFPNDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMHGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFAPKGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVSPSLVGKPPQAREVSGPYNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITKLGLAATNANDIWGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDATFRPEWSKGWAFGPDPYTDNDIVTNKMRATYIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLLP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CHOLESTEROL OXIDASE
publication title Oxygen access to the active site of cholesterol oxidase through a narrow channel is gated by an Arg-Glu pair.
pubmed doi rcsb
source organism Brevibacterium sterolicum
molecule tags Oxidoreductase
total genus 179
structure length 541
sequence length 557
chains with identical sequence B
ec nomenclature ec 1.1.3.6: Cholesterol oxidase.
pdb deposition date 2001-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09129 Chol_subst-bind Cholesterol oxidase, substrate-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1i19A04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1i19A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1i19A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1i19A03
4BCAA 1N5XA 2P4PA 3DEDA 4BBYA 3I99A 3DQ0A 3EUB3 1FO4A 2O3GA 3AMZA 2NQWA 1ZR6A 4UD8A 3TX1A 2VAOA 1MBTA 2VFTA 2QKNA 2PLIA 1VAOA 4BC7A 1N62C 2I0KA 3TSJA 1DIQA 1FFUC 3W8ZA 4PYTA 3S1CA 1W1LA 3BW7A 1WVFA 2W3SA 2Q4WA 3NVZB 3NVWB 2VFUA 2W55A 5HMRA 3TSHA 4PVEA 1E8GA 2BVGA 1AHZA 2GQUA 1DZNA 3NVVB 2R2ZA 2OAIA 1E0YA 3JS8A 1W1SA 4EC3A 1WYGA 1W1OA 4ML8A 1W1JA 3AN1A 4JB1A 5FXDA 1E8HA 2W54A 4PWCA 2PLSA 3S1DA 3D2HA 4HG0A 1T3QC 1QLUA 3PM9A 2W3RA 5AE2A 3VTEA 5AE3A 5AE1A 2Q85A 4JAYA 2GQTA 1HSKA 3S1EA 3FWAA 5G5GB 2EXRA 2BVHA 1W1RA 3FW9A 3HRDC 4MLAA 3D2JA 3W8XA 3FW7A 5HHZA 5HQXA 1SB3B 4PVKA 3B9JB 1UXYA 3NS1B 2VFRA 1FFVC 5FXEA 3S1FA 1VDVA 1AHVA 1N63C 3NVYB 4BC9A 1N61C 1I19A 3ETRB 2P13A 3W8WA 2AXRA 3KJMA 1W1KA 1DIIA 4ZOHB 3D2DA 1JRPA 3LLBA 1MBBA 4PVHA 3NRZB 2YVSA 5FXFA 2R8DA 3C0PA 4OALA 1W1MA 1FIQB 2BVFA 4DNSA 1V97A 3FW8A 2P3HA 2E3TA 4XLOA 3SR6B 4PWBA 1AHUA 5D79A 2RK5A 2VFVA 1RM6B 1N60C 1E8FA 1WVEA 5FXPA 3AM9A 2VFSA 1QLTA 5G5HB 3GSYA 2QPMA 1F0XA 4O95A 1ZXIC 3LAEA 1W1QA 4PZFA 5ADZA 4PVJA 1JROA 1N5WC 2MBRA
chains in the Genus database with same CATH superfamily
4BCAA 1N5XA 2P4PA 3DEDA 4BBYA 3I99A 3DQ0A 3EUB3 1FO4A 2Y3RA 2O3GA 3AMZA 2NQWA 1ZR6A 4UD8A 3TX1A 2VAOA 1MBTA 2UUUA 5K8EA 2VFTA 2QKNA 2PLIA 1VAOA 4BC7A 1N62C 2I0KA 3TSJA 1DIQA 1FFUC 3EJEB 4PYTA 3W8ZA 3S1CA 1W1LA 3BW7A 3RJ8A 1WVFA 3EJBB 2W3SA 2Q4WA 3NVZB 5L6FA 3NVWB 2VFUA 2W55A 5HMRA 3TSHA 2Y08A 4PVEA 1E8GA 2BVGA 1AHZA 2GQUA 1DZNA 2IPIA 3NVVB 2R2ZA 2OAIA 1E0YA 5AWVA 3JS8A 1W1SA 4EC3A 1WYGA 1W1OA 4ML8A 1W1JA 3AN1A 4JB1A 5FXDA 1E8HA 2W54A 3EJDB 4PWCA 3S1DA 3D2HA 2PLSA 4HG0A 1T3QC 1QLUA 3PM9A 2W3RA 5AE2A 3VTEA 5AE3A 5AE1A 2Q85A 4JAYA 5L6GA 2GQTA 1HSKA 2UUVA 3S1EA 5I1WA 3FWAA 5G5GB 2EXRA 2BVHA 1W1RA 3FW9A 3HRDC 4MLAA 3HSUA 3D2JA 3W8XA 3FW7A 5HHZA 5HQXA 1SB3B 4PVKA 3B9JB 1UXYA 3NS1B 2VFRA 1FFVC 5FXEA 3S1FA 1VDVA 1AHVA 1N63C 3NVYB 4BC9A 1N61C 1I19A 3ETRB 2P13A 3RJAA 3W8WA 2AXRA 3KJMA 1W1KA 1DIIA 4ZOHB 3D2DA 3POPA 1JRPA 3LLBA 1MBBA 4PVHA 3NRZB 2YVSA 5FXFA 2R8DA 3C0PA 4OALA 1W1MA 1FIQB 2BVFA 4DNSA 5I1VA 1V97A 3FW8A 2P3HA 2E3TA 4XLOA 3SR6B 4PWBA 3PQBA 1AHUA 5D79A 2RK5A 2VFVA 1RM6B 1N60C 1E8FA 1WVEA 5FXPA 3AM9A 2VFSA 1QLTA 5G5HB 3GSYA 2WDWA 2QPMA 1F0XA 4O95A 1ZXIC 3LAEA 2Y4GA 1W1QA 4PZFA 5ADZA 2Y3SA 4PVJA 1JROA 1N5WC 2MBRA
chains in the Genus database with same CATH topology
4BCAA 1N5XA 2P4PA 3DEDA 4BBYA 3I99A 3DQ0A 3EUB3 1FO4A 2Y3RA 2O3GA 3AMZA 2NQWA 1ZR6A 4UD8A 3TX1A 2VAOA 1MBTA 2UUUA 5K8EA 2VFTA 2QKNA 2PLIA 1VAOA 4BC7A 1N62C 2I0KA 3TSJA 1DIQA 1FFUC 3W8ZA 4PYTA 3S1CA 1W1LA 3BW7A 3RJ8A 1WVFA 2W3SA 2Q4WA 3NVZB 5L6FA 3NVWB 2VFUA 2W55A 5HMRA 3TSHA 2Y08A 4PVEA 1E8GA 2BVGA 1AHZA 2GQUA 1DZNA 2IPIA 3NVVB 2R2ZA 2OAIA 1E0YA 5AWVA 3JS8A 1W1SA 4EC3A 1WYGA 1W1OA 4ML8A 1W1JA 3AN1A 4JB1A 5FXDA 1E8HA 2W54A 4PWCA 2PLSA 3S1DA 3D2HA 4HG0A 1T3QC 1QLUA 3PM9A 2W3RA 5AE2A 3VTEA 5AE3A 5AE1A 2Q85A 4JAYA 5L6GA 2GQTA 1HSKA 2UUVA 3S1EA 5I1WA 3FWAA 5G5GB 2EXRA 2BVHA 1W1RA 3FW9A 3HRDC 4MLAA 3HSUA 3D2JA 3W8XA 3FW7A 5HHZA 5HQXA 1SB3B 4PVKA 3B9JB 1UXYA 3NS1B 2VFRA 1FFVC 5FXEA 3S1FA 1VDVA 1AHVA 1N63C 3NVYB 4BC9A 1N61C 1I19A 3ETRB 2P13A 3RJAA 3W8WA 2AXRA 3KJMA 1W1KA 1DIIA 4ZOHB 3D2DA 3POPA 1JRPA 3LLBA 1MBBA 4PVHA 3NRZB 2YVSA 5FXFA 2R8DA 3C0PA 4OALA 1W1MA 1FIQB 2BVFA 4DNSA 5I1VA 1V97A 3FW8A 2P3HA 2E3TA 4XLOA 3SR6B 4PWBA 3PQBA 1AHUA 5D79A 2RK5A 2VFVA 1RM6B 1N60C 1E8FA 1WVEA 5FXPA 3AM9A 2VFSA 1QLTA 5G5HB 3GSYA 2WDWA 2QPMA 1F0XA 4O95A 1ZXIC 3LAEA 2Y4GA 1W1QA 4PZFA 5ADZA 2Y3SA 4PVJA 1JROA 1N5WC 2MBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BCA A;  1N5X A;  2P4P A;  3DED A;  4BBY A;  3I99 A;  3DQ0 A;  3EUB 3;  1FO4 A;  2O3G A;  3AMZ A;  2NQW A;  1ZR6 A;  4UD8 A;  3TX1 A;  2VAO A;  1MBT A;  2VFT A;  2QKN A;  2PLI A;  1VAO A;  4BC7 A;  1N62 C;  2I0K A;  3TSJ A;  1DIQ A;  1FFU C;  3W8Z A;  4PYT A;  3S1C A;  1W1L A;  3BW7 A;  1WVF A;  2W3S A;  2Q4W A;  3NVZ B;  3NVW B;  2VFU A;  2W55 A;  5HMR A;  3TSH A;  4PVE A;  1E8G A;  2BVG A;  1AHZ A;  2GQU A;  1DZN A;  3NVV B;  2R2Z A;  2OAI A;  1E0Y A;  3JS8 A;  1W1S A;  4EC3 A;  1WYG A;  1W1O A;  4ML8 A;  1W1J A;  3AN1 A;  4JB1 A;  5FXD A;  1E8H A;  2W54 A;  4PWC A;  2PLS A;  3S1D A;  3D2H A;  4HG0 A;  1T3Q C;  1QLU A;  3PM9 A;  2W3R A;  5AE2 A;  3VTE A;  5AE3 A;  5AE1 A;  2Q85 A;  4JAY A;  2GQT A;  1HSK A;  3S1E A;  3FWA A;  5G5G B;  2EXR A;  2BVH A;  1W1R A;  3FW9 A;  3HRD C;  4MLA A;  3D2J A;  3W8X A;  3FW7 A;  5HHZ A;  5HQX A;  1SB3 B;  4PVK A;  3B9J B;  1UXY A;  3NS1 B;  2VFR A;  1FFV C;  5FXE A;  3S1F A;  1VDV A;  1AHV A;  1N63 C;  3NVY B;  4BC9 A;  1N61 C;  1I19 A;  3ETR B;  2P13 A;  3W8W A;  2AXR A;  3KJM A;  1W1K A;  1DII A;  4ZOH B;  3D2D A;  1JRP A;  3LLB A;  1MBB A;  4PVH A;  3NRZ B;  2YVS A;  5FXF A;  2R8D A;  3C0P A;  4OAL A;  1W1M A;  1FIQ B;  2BVF A;  4DNS A;  1V97 A;  3FW8 A;  2P3H A;  2E3T A;  4XLO A;  3SR6 B;  4PWB A;  1AHU A;  5D79 A;  2RK5 A;  2VFV A;  1RM6 B;  1N60 C;  1E8F A;  1WVE A;  5FXP A;  3AM9 A;  2VFS A;  1QLT A;  5G5H B;  3GSY A;  2QPM A;  1F0X A;  4O95 A;  1ZXI C;  3LAE A;  1W1Q A;  4PZF A;  5ADZ A;  4PVJ A;  1JRO A;  1N5W C;  2MBR A; 
#chains in the Genus database with same CATH topology
 4BCA A;  1N5X A;  2P4P A;  3DED A;  4BBY A;  3I99 A;  3DQ0 A;  3EUB 3;  1FO4 A;  2Y3R A;  2O3G A;  3AMZ A;  2NQW A;  1ZR6 A;  4UD8 A;  3TX1 A;  2VAO A;  1MBT A;  2UUU A;  5K8E A;  2VFT A;  2QKN A;  2PLI A;  1VAO A;  4BC7 A;  1N62 C;  2I0K A;  3TSJ A;  1DIQ A;  1FFU C;  3EJE B;  4PYT A;  3W8Z A;  3S1C A;  1W1L A;  3BW7 A;  3RJ8 A;  1WVF A;  3EJB B;  2W3S A;  2Q4W A;  3NVZ B;  5L6F A;  3NVW B;  2VFU A;  2W55 A;  5HMR A;  3TSH A;  2Y08 A;  4PVE A;  1E8G A;  2BVG A;  1AHZ A;  2GQU A;  1DZN A;  2IPI A;  3NVV B;  2R2Z A;  2OAI A;  1E0Y A;  5AWV A;  3JS8 A;  1W1S A;  4EC3 A;  1WYG A;  1W1O A;  4ML8 A;  1W1J A;  3AN1 A;  4JB1 A;  5FXD A;  1E8H A;  2W54 A;  3EJD B;  4PWC A;  3S1D A;  3D2H A;  2PLS A;  4HG0 A;  1T3Q C;  1QLU A;  3PM9 A;  2W3R A;  5AE2 A;  3VTE A;  5AE3 A;  5AE1 A;  2Q85 A;  4JAY A;  5L6G A;  2GQT A;  1HSK A;  2UUV A;  3S1E A;  5I1W A;  3FWA A;  5G5G B;  2EXR A;  2BVH A;  1W1R A;  3FW9 A;  3HRD C;  4MLA A;  3HSU A;  3D2J A;  3W8X A;  3FW7 A;  5HHZ A;  5HQX A;  1SB3 B;  4PVK A;  3B9J B;  1UXY A;  3NS1 B;  2VFR A;  1FFV C;  5FXE A;  3S1F A;  1VDV A;  1AHV A;  1N63 C;  3NVY B;  4BC9 A;  1N61 C;  1I19 A;  3ETR B;  2P13 A;  3RJA A;  3W8W A;  2AXR A;  3KJM A;  1W1K A;  1DII A;  4ZOH B;  3D2D A;  3POP A;  1JRP A;  3LLB A;  1MBB A;  4PVH A;  3NRZ B;  2YVS A;  5FXF A;  2R8D A;  3C0P A;  4OAL A;  1W1M A;  1FIQ B;  2BVF A;  4DNS A;  5I1V A;  1V97 A;  3FW8 A;  2P3H A;  2E3T A;  4XLO A;  3SR6 B;  4PWB A;  3PQB A;  1AHU A;  5D79 A;  2RK5 A;  2VFV A;  1RM6 B;  1N60 C;  1E8F A;  1WVE A;  5FXP A;  3AM9 A;  2VFS A;  1QLT A;  5G5H B;  3GSY A;  2WDW A;  2QPM A;  1F0X A;  4O95 A;  1ZXI C;  3LAE A;  2Y4G A;  1W1Q A;  4PZF A;  5ADZ A;  2Y3S A;  4PVJ A;  1JRO A;  1N5W C;  2MBR A; 
#chains in the Genus database with same CATH homology
 4BCA A;  1N5X A;  2P4P A;  3DED A;  4BBY A;  3I99 A;  3DQ0 A;  3EUB 3;  1FO4 A;  2Y3R A;  2O3G A;  3AMZ A;  2NQW A;  1ZR6 A;  4UD8 A;  3TX1 A;  2VAO A;  1MBT A;  2UUU A;  5K8E A;  2VFT A;  2QKN A;  2PLI A;  1VAO A;  4BC7 A;  1N62 C;  2I0K A;  3TSJ A;  1DIQ A;  1FFU C;  3W8Z A;  4PYT A;  3S1C A;  1W1L A;  3BW7 A;  3RJ8 A;  1WVF A;  2W3S A;  2Q4W A;  3NVZ B;  5L6F A;  3NVW B;  2VFU A;  2W55 A;  5HMR A;  3TSH A;  2Y08 A;  4PVE A;  1E8G A;  2BVG A;  1AHZ A;  2GQU A;  1DZN A;  2IPI A;  3NVV B;  2R2Z A;  2OAI A;  1E0Y A;  5AWV A;  3JS8 A;  1W1S A;  4EC3 A;  1WYG A;  1W1O A;  4ML8 A;  1W1J A;  3AN1 A;  4JB1 A;  5FXD A;  1E8H A;  2W54 A;  4PWC A;  2PLS A;  3S1D A;  3D2H A;  4HG0 A;  1T3Q C;  1QLU A;  3PM9 A;  2W3R A;  5AE2 A;  3VTE A;  5AE3 A;  5AE1 A;  2Q85 A;  4JAY A;  5L6G A;  2GQT A;  1HSK A;  2UUV A;  3S1E A;  5I1W A;  3FWA A;  5G5G B;  2EXR A;  2BVH A;  1W1R A;  3FW9 A;  3HRD C;  4MLA A;  3HSU A;  3D2J A;  3W8X A;  3FW7 A;  5HHZ A;  5HQX A;  1SB3 B;  4PVK A;  3B9J B;  1UXY A;  3NS1 B;  2VFR A;  1FFV C;  5FXE A;  3S1F A;  1VDV A;  1AHV A;  1N63 C;  3NVY B;  4BC9 A;  1N61 C;  1I19 A;  3ETR B;  2P13 A;  3RJA A;  3W8W A;  2AXR A;  3KJM A;  1W1K A;  1DII A;  4ZOH B;  3D2D A;  3POP A;  1JRP A;  3LLB A;  1MBB A;  4PVH A;  3NRZ B;  2YVS A;  5FXF A;  2R8D A;  3C0P A;  4OAL A;  1W1M A;  1FIQ B;  2BVF A;  4DNS A;  5I1V A;  1V97 A;  3FW8 A;  2P3H A;  2E3T A;  4XLO A;  3SR6 B;  4PWB A;  3PQB A;  1AHU A;  5D79 A;  2RK5 A;  2VFV A;  1RM6 B;  1N60 C;  1E8F A;  1WVE A;  5FXP A;  3AM9 A;  2VFS A;  1QLT A;  5G5H B;  3GSY A;  2WDW A;  2QPM A;  1F0X A;  4O95 A;  1ZXI C;  3LAE A;  2Y4G A;  1W1Q A;  4PZF A;  5ADZ A;  2Y3S A;  4PVJ A;  1JRO A;  1N5W C;  2MBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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