1I19A

Crystal structure of cholesterol oxidase from b.sterolicum
Total Genus 179
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
557
structure length
541
Chain Sequence
VAPLPTPPNFPNDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMHGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFAPKGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVSPSLVGKPPQAREVSGPYNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITKLGLAATNANDIWGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDATFRPEWSKGWAFGPDPYTDNDIVTNKMRATYIEGVPTTENWDTARARYNQIDPHRVFTNGFMDKLLP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords CHOLESTEROL OXIDASE
publication title Oxygen access to the active site of cholesterol oxidase through a narrow channel is gated by an Arg-Glu pair.
pubmed doi rcsb
source organism Brevibacterium sterolicum
total genus 179
structure length 541
sequence length 557
chains with identical sequence B
ec nomenclature ec 1.1.3.6: Cholesterol oxidase.
pdb deposition date 2001-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09129 Chol_subst-bind Cholesterol oxidase, substrate-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1i19A04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1i19A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1i19A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1i19A03
4BC9A 3D2DA 2VFUA 2VAOA 3TSJA 1N61C 2GQUA 1W1MA 1E8HA 2RK5A 2EXRA 1N5WC 4BCAA 2I0KA 1RM6B 1WYGA 3BW7A 3W8XA 1MBTA 3FW9A 4PVKA 3S1DA 1VAOA 1N63C 1N5XA 4PWBA 5D79A 1QLTA 3TX1A 3SR6B 5G5GB 3PM9A 5FXPA 2QPMA 2BVFA 5HQXA 4MLAA 3KJMA 2R8DA 2PLIA 3W8WA 3LAEA 3TSHA 2W3SA 1WVEA 4PWCA 3W8ZA 5AE1A 1UXYA 5HHZA 2Q4WA 4XLOA 1AHUA 1DIIA 3DQ0A 3AMZA 3NVWB 1VDVA 4PYTA 1AHZA 2Q85A 4UD8A 1MBBA 3B9JB 5ADZA 1E0YA 1FFUC 3NVVB 3VTEA 3DEDA 1QLUA 5AE2A 1N60C 4JAYA 2R2ZA 5AE3A 4PVHA 5G5HB 3LLBA 3NS1B 1FO4A 1HSKA 2GQTA 2VFRA 2P4PA 3S1FA 3FW8A 2AXRA 4ZOHB 1ZR6A 1W1KA 1N62C 4JB1A 3GSYA 1W1SA 3D2JA 1E8GA 2BVGA 2E3TA 4DNSA 1F0XA 1ZXIC 2BVHA 2P3HA 1W1QA 2O3GA 1W1OA 1FIQB 1W1RA 1T3QC 3ETRB 2NQWA 3I99A 5HMRA 1W1JA 3EUB3 1SB3B 1JROA 3AM9A 1FFVC 5FXFA 3C0PA 5FXEA 5FXDA 3FWAA 3NVYB 3AN1A 1WVFA 2VFSA 1JRPA 2W3RA 3S1EA 4PVJA 2OAIA 2QKNA 4BBYA 1E8FA 4HG0A 3NRZB 4ML8A 2W55A 2P13A 4BC7A 2MBRA 1AHVA 4O95A 3JS8A 1I19A 1V97A 4EC3A 1W1LA 1DZNA 2VFVA 3D2HA 2VFTA 3FW7A 3NVZB 4PZFA 2W54A 4PVEA 3HRDC 1DIQA 2PLSA 3S1CA 2YVSA 4OALA
chains in the Genus database with same CATH superfamily
3RJAA 4BC9A 3D2DA 2VFUA 2VAOA 3TSJA 1N61C 2IPIA 2GQUA 1W1MA 1E8HA 2RK5A 2EXRA 1N5WC 4BCAA 2I0KA 1RM6B 1WYGA 3BW7A 3W8XA 1MBTA 3FW9A 4PVKA 3S1DA 1VAOA 1N63C 1N5XA 4PWBA 5AWVA 5I1WA 5D79A 1QLTA 3TX1A 3POPA 3SR6B 5G5GB 3PM9A 5FXPA 2QPMA 2BVFA 5HQXA 4MLAA 3KJMA 2R8DA 2PLIA 3W8WA 3LAEA 3TSHA 2W3SA 1WVEA 4PWCA 3W8ZA 3EJDB 5AE1A 1UXYA 5HHZA 2Q4WA 4XLOA 3HSUA 1AHUA 1DIIA 3DQ0A 3PQBA 3AMZA 3NVWB 1VDVA 4PYTA 1AHZA 2Q85A 4UD8A 1MBBA 3B9JB 5ADZA 1E0YA 1FFUC 3NVVB 3VTEA 3DEDA 1QLUA 5AE2A 1N60C 4JAYA 2R2ZA 5AE3A 4PVHA 5G5HB 3LLBA 3NS1B 3RJ8A 1FO4A 1HSKA 2GQTA 2VFRA 5L6FA 2P4PA 3S1FA 3FW8A 2AXRA 4ZOHB 1ZR6A 2WDWA 1W1KA 1N62C 4JB1A 3GSYA 1W1SA 3D2JA 1E8GA 2BVGA 3EJBB 2E3TA 2Y3SA 4DNSA 1F0XA 1ZXIC 2BVHA 2P3HA 2Y08A 5I1VA 1W1QA 2O3GA 1W1OA 2Y4GA 1FIQB 1W1RA 1T3QC 3ETRB 2NQWA 3I99A 5HMRA 1W1JA 3EUB3 1SB3B 1JROA 3AM9A 1FFVC 5FXFA 3C0PA 5FXEA 2Y3RA 5FXDA 3FWAA 3AN1A 1WVFA 2VFSA 1JRPA 2W3RA 3S1EA 4PVJA 2OAIA 2QKNA 4BBYA 1E8FA 4HG0A 3NRZB 5L6GA 4ML8A 2W55A 2P13A 4BC7A 2MBRA 4OALA 1AHVA 4O95A 3JS8A 1I19A 3EJEB 1V97A 4EC3A 1W1LA 1DZNA 2VFVA 3D2HA 2VFTA 3FW7A 3NVZB 4PZFA 2W54A 4PVEA 3HRDC 1DIQA 2UUUA 5K8EA 2PLSA 2UUVA 3S1CA 2YVSA 3NVYB
chains in the Genus database with same CATH topology
3RJAA 4BC9A 3D2DA 2VFUA 2VAOA 3TSJA 1N61C 2IPIA 2GQUA 1W1MA 1E8HA 2RK5A 2EXRA 1N5WC 4BCAA 2I0KA 1RM6B 1WYGA 3BW7A 3W8XA 1MBTA 3FW9A 4PVKA 3S1DA 1VAOA 1N63C 1N5XA 4PWBA 5AWVA 5I1WA 5D79A 1QLTA 3TX1A 3POPA 3SR6B 5G5GB 3PM9A 5FXPA 2QPMA 2BVFA 5HQXA 4MLAA 3KJMA 2R8DA 2PLIA 3W8WA 3LAEA 3TSHA 2W3SA 1WVEA 4PWCA 3W8ZA 5AE1A 1UXYA 5HHZA 2Q4WA 4XLOA 3HSUA 1AHUA 1DIIA 3DQ0A 3PQBA 3AMZA 3NVWB 1VDVA 4PYTA 1AHZA 2Q85A 4UD8A 1MBBA 3B9JB 5ADZA 1E0YA 1FFUC 3NVVB 3VTEA 3DEDA 1QLUA 5AE2A 1N60C 4JAYA 2R2ZA 5AE3A 4PVHA 5G5HB 3LLBA 3NS1B 3RJ8A 1FO4A 1HSKA 2GQTA 2VFRA 5L6FA 2P4PA 3S1FA 3FW8A 2AXRA 4ZOHB 1ZR6A 2WDWA 1W1KA 1N62C 4JB1A 3GSYA 1W1SA 3D2JA 1E8GA 2BVGA 2E3TA 2Y3SA 4DNSA 1F0XA 1ZXIC 2BVHA 2P3HA 2Y08A 5I1VA 1W1QA 2O3GA 1W1OA 2Y4GA 1FIQB 1W1RA 1T3QC 3ETRB 2NQWA 3I99A 5HMRA 1W1JA 3EUB3 1SB3B 1JROA 3AM9A 1FFVC 5FXFA 3C0PA 5FXEA 2Y3RA 5FXDA 3FWAA 3NVYB 3AN1A 1WVFA 2VFSA 1JRPA 2W3RA 3S1EA 4PVJA 2OAIA 2QKNA 4BBYA 1E8FA 4HG0A 3NRZB 5L6GA 4ML8A 2W55A 2P13A 4BC7A 2MBRA 1AHVA 4O95A 3JS8A 1I19A 1V97A 4EC3A 1W1LA 1DZNA 2VFVA 3D2HA 2VFTA 3FW7A 3NVZB 4PZFA 2W54A 4PVEA 3HRDC 1DIQA 2UUUA 5K8EA 2PLSA 2UUVA 3S1CA 2YVSA 4OALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BC9 A;  3D2D A;  2VFU A;  2VAO A;  3TSJ A;  1N61 C;  2GQU A;  1W1M A;  1E8H A;  2RK5 A;  2EXR A;  1N5W C;  4BCA A;  2I0K A;  1RM6 B;  1WYG A;  3BW7 A;  3W8X A;  1MBT A;  3FW9 A;  4PVK A;  3S1D A;  1VAO A;  1N63 C;  1N5X A;  4PWB A;  5D79 A;  1QLT A;  3TX1 A;  3SR6 B;  5G5G B;  3PM9 A;  5FXP A;  2QPM A;  2BVF A;  5HQX A;  4MLA A;  3KJM A;  2R8D A;  2PLI A;  3W8W A;  3LAE A;  3TSH A;  2W3S A;  1WVE A;  4PWC A;  3W8Z A;  5AE1 A;  1UXY A;  5HHZ A;  2Q4W A;  4XLO A;  1AHU A;  1DII A;  3DQ0 A;  3AMZ A;  3NVW B;  1VDV A;  4PYT A;  1AHZ A;  2Q85 A;  4UD8 A;  1MBB A;  3B9J B;  5ADZ A;  1E0Y A;  1FFU C;  3NVV B;  3VTE A;  3DED A;  1QLU A;  5AE2 A;  1N60 C;  4JAY A;  2R2Z A;  5AE3 A;  4PVH A;  5G5H B;  3LLB A;  3NS1 B;  1FO4 A;  1HSK A;  2GQT A;  2VFR A;  2P4P A;  3S1F A;  3FW8 A;  2AXR A;  4ZOH B;  1ZR6 A;  1W1K A;  1N62 C;  4JB1 A;  3GSY A;  1W1S A;  3D2J A;  1E8G A;  2BVG A;  2E3T A;  4DNS A;  1F0X A;  1ZXI C;  2BVH A;  2P3H A;  1W1Q A;  2O3G A;  1W1O A;  1FIQ B;  1W1R A;  1T3Q C;  3ETR B;  2NQW A;  3I99 A;  5HMR A;  1W1J A;  3EUB 3;  1SB3 B;  1JRO A;  3AM9 A;  1FFV C;  5FXF A;  3C0P A;  5FXE A;  5FXD A;  3FWA A;  3NVY B;  3AN1 A;  1WVF A;  2VFS A;  1JRP A;  2W3R A;  3S1E A;  4PVJ A;  2OAI A;  2QKN A;  4BBY A;  1E8F A;  4HG0 A;  3NRZ B;  4ML8 A;  2W55 A;  2P13 A;  4BC7 A;  2MBR A;  1AHV A;  4O95 A;  3JS8 A;  1I19 A;  1V97 A;  4EC3 A;  1W1L A;  1DZN A;  2VFV A;  3D2H A;  2VFT A;  3FW7 A;  3NVZ B;  4PZF A;  2W54 A;  4PVE A;  3HRD C;  1DIQ A;  2PLS A;  3S1C A;  2YVS A;  4OAL A; 
#chains in the Genus database with same CATH topology
 3RJA A;  4BC9 A;  3D2D A;  2VFU A;  2VAO A;  3TSJ A;  1N61 C;  2IPI A;  2GQU A;  1W1M A;  1E8H A;  2RK5 A;  2EXR A;  1N5W C;  4BCA A;  2I0K A;  1RM6 B;  1WYG A;  3BW7 A;  3W8X A;  1MBT A;  3FW9 A;  4PVK A;  3S1D A;  1VAO A;  1N63 C;  1N5X A;  4PWB A;  5AWV A;  5I1W A;  5D79 A;  1QLT A;  3TX1 A;  3POP A;  3SR6 B;  5G5G B;  3PM9 A;  5FXP A;  2QPM A;  2BVF A;  5HQX A;  4MLA A;  3KJM A;  2R8D A;  2PLI A;  3W8W A;  3LAE A;  3TSH A;  2W3S A;  1WVE A;  4PWC A;  3W8Z A;  3EJD B;  5AE1 A;  1UXY A;  5HHZ A;  2Q4W A;  4XLO A;  3HSU A;  1AHU A;  1DII A;  3DQ0 A;  3PQB A;  3AMZ A;  3NVW B;  1VDV A;  4PYT A;  1AHZ A;  2Q85 A;  4UD8 A;  1MBB A;  3B9J B;  5ADZ A;  1E0Y A;  1FFU C;  3NVV B;  3VTE A;  3DED A;  1QLU A;  5AE2 A;  1N60 C;  4JAY A;  2R2Z A;  5AE3 A;  4PVH A;  5G5H B;  3LLB A;  3NS1 B;  3RJ8 A;  1FO4 A;  1HSK A;  2GQT A;  2VFR A;  5L6F A;  2P4P A;  3S1F A;  3FW8 A;  2AXR A;  4ZOH B;  1ZR6 A;  2WDW A;  1W1K A;  1N62 C;  4JB1 A;  3GSY A;  1W1S A;  3D2J A;  1E8G A;  2BVG A;  3EJB B;  2E3T A;  2Y3S A;  4DNS A;  1F0X A;  1ZXI C;  2BVH A;  2P3H A;  2Y08 A;  5I1V A;  1W1Q A;  2O3G A;  1W1O A;  2Y4G A;  1FIQ B;  1W1R A;  1T3Q C;  3ETR B;  2NQW A;  3I99 A;  5HMR A;  1W1J A;  3EUB 3;  1SB3 B;  1JRO A;  3AM9 A;  1FFV C;  5FXF A;  3C0P A;  5FXE A;  2Y3R A;  5FXD A;  3FWA A;  3AN1 A;  1WVF A;  2VFS A;  1JRP A;  2W3R A;  3S1E A;  4PVJ A;  2OAI A;  2QKN A;  4BBY A;  1E8F A;  4HG0 A;  3NRZ B;  5L6G A;  4ML8 A;  2W55 A;  2P13 A;  4BC7 A;  2MBR A;  4OAL A;  1AHV A;  4O95 A;  3JS8 A;  1I19 A;  3EJE B;  1V97 A;  4EC3 A;  1W1L A;  1DZN A;  2VFV A;  3D2H A;  2VFT A;  3FW7 A;  3NVZ B;  4PZF A;  2W54 A;  4PVE A;  3HRD C;  1DIQ A;  2UUU A;  5K8E A;  2PLS A;  2UUV A;  3S1C A;  2YVS A;  3NVY B; 
#chains in the Genus database with same CATH homology
 3RJA A;  4BC9 A;  3D2D A;  2VFU A;  2VAO A;  3TSJ A;  1N61 C;  2IPI A;  2GQU A;  1W1M A;  1E8H A;  2RK5 A;  2EXR A;  1N5W C;  4BCA A;  2I0K A;  1RM6 B;  1WYG A;  3BW7 A;  3W8X A;  1MBT A;  3FW9 A;  4PVK A;  3S1D A;  1VAO A;  1N63 C;  1N5X A;  4PWB A;  5AWV A;  5I1W A;  5D79 A;  1QLT A;  3TX1 A;  3POP A;  3SR6 B;  5G5G B;  3PM9 A;  5FXP A;  2QPM A;  2BVF A;  5HQX A;  4MLA A;  3KJM A;  2R8D A;  2PLI A;  3W8W A;  3LAE A;  3TSH A;  2W3S A;  1WVE A;  4PWC A;  3W8Z A;  5AE1 A;  1UXY A;  5HHZ A;  2Q4W A;  4XLO A;  3HSU A;  1AHU A;  1DII A;  3DQ0 A;  3PQB A;  3AMZ A;  3NVW B;  1VDV A;  4PYT A;  1AHZ A;  2Q85 A;  4UD8 A;  1MBB A;  3B9J B;  5ADZ A;  1E0Y A;  1FFU C;  3NVV B;  3VTE A;  3DED A;  1QLU A;  5AE2 A;  1N60 C;  4JAY A;  2R2Z A;  5AE3 A;  4PVH A;  5G5H B;  3LLB A;  3NS1 B;  3RJ8 A;  1FO4 A;  1HSK A;  2GQT A;  2VFR A;  5L6F A;  2P4P A;  3S1F A;  3FW8 A;  2AXR A;  4ZOH B;  1ZR6 A;  2WDW A;  1W1K A;  1N62 C;  4JB1 A;  3GSY A;  1W1S A;  3D2J A;  1E8G A;  2BVG A;  2E3T A;  2Y3S A;  4DNS A;  1F0X A;  1ZXI C;  2BVH A;  2P3H A;  2Y08 A;  5I1V A;  1W1Q A;  2O3G A;  1W1O A;  2Y4G A;  1FIQ B;  1W1R A;  1T3Q C;  3ETR B;  2NQW A;  3I99 A;  5HMR A;  1W1J A;  3EUB 3;  1SB3 B;  1JRO A;  3AM9 A;  1FFV C;  5FXF A;  3C0P A;  5FXE A;  2Y3R A;  5FXD A;  3FWA A;  3NVY B;  3AN1 A;  1WVF A;  2VFS A;  1JRP A;  2W3R A;  3S1E A;  4PVJ A;  2OAI A;  2QKN A;  4BBY A;  1E8F A;  4HG0 A;  3NRZ B;  5L6G A;  4ML8 A;  2W55 A;  2P13 A;  4BC7 A;  2MBR A;  1AHV A;  4O95 A;  3JS8 A;  1I19 A;  1V97 A;  4EC3 A;  1W1L A;  1DZN A;  2VFV A;  3D2H A;  2VFT A;  3FW7 A;  3NVZ B;  4PZF A;  2W54 A;  4PVE A;  3HRD C;  1DIQ A;  2UUU A;  5K8E A;  2PLS A;  2UUV A;  3S1C A;  2YVS A;  4OAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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