1W1SA

Plant cytokinin dehydrogenase in complex with benzylaminopurine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CYTOKININ DEHYDROGENASE
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 170
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1sA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1sA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1sA03
2RK5A 5D79A 2VFUA 3S1CA 3LLBA 1AHUA 3W8WA 3I99A 2PLIA 1N62C 1VDVA 4O95A 3LAEA 3S1DA 3AN1A 1I19A 4EC3A 1FO4A 1MBTA 1T3QC 3D2DA 1W1OA 1FIQB 4PVEA 2O3GA 4DNSA 3AMZA 5AE2A 1WYGA 4JB1A 4PVHA 2W3RA 4JAYA 3GSYA 3NRZB 4PWBA 3ETRB 1MBBA 4BCAA 1DIIA 2PLSA 2E3TA 3NVZB 2W55A 1QLTA 1DIQA 3FWAA 4BC9A 1W1LA 1WVFA 1W1SA 4OALA 1ZXIC 3FW8A 1WVEA 3S1FA 3PM9A 3NVVB 3FW7A 4PYTA 1W1RA 1N60C 3VTEA 2YVSA 3NS1B 3TSJA 4BBYA 2P13A 3S1EA 5FXDA 1W1QA 4PZFA 2P3HA 1FFUC 4ZOHB 1N5XA 4BC7A 4PWCA 5AE3A 1F0XA 2R8DA 4PVJA 3DEDA 2NQWA 2W3SA 3NVWB 2GQTA 2VFSA 1JRPA 1E8GA 1W1MA 3EUB3 1JROA 1AHVA 3HRDC 1AHZA 5FXPA 2BVHA 1N61C 2MBRA 3D2JA 5AE1A 2OAIA 3SR6B 5HHZA 1E8HA 5FXEA 1QLUA 3C0PA 5HQXA 4ML8A 1UXYA 3AM9A 2QKNA 1RM6B 4PVKA 1W1KA 3DQ0A 3BW7A 2R2ZA 2BVGA 1FFVC 3TX1A 5ADZA 4UD8A 2P4PA 2AXRA 5G5GB 1E8FA 3KJMA 3W8ZA 2VFVA 1W1JA 1DZNA 3JS8A 4MLAA 3D2HA 1E0YA 1SB3B 2EXRA 2VFTA 2W54A 4XLOA 3W8XA 4HG0A 2I0KA 5FXFA 2Q85A 5HMRA 1VAOA 1ZR6A 1HSKA 3TSHA 3FW9A 2VAOA 2GQUA 2QPMA 5G5HB 1V97A 2VFRA 3B9JB 1N5WC 2Q4WA 2BVFA 3NVYB 1N63C
chains in the Genus database with same CATH superfamily
2RK5A 2WDWA 5L6GA 5D79A 2VFUA 3S1CA 3LLBA 1AHUA 3HSUA 2Y3RA 3W8WA 3I99A 2PLIA 1N62C 1VDVA 3EJBB 4O95A 2UUUA 3LAEA 5L6FA 3S1DA 3AN1A 1I19A 4EC3A 1FO4A 1MBTA 1T3QC 3D2DA 1W1OA 1FIQB 4PVEA 2O3GA 4DNSA 3AMZA 5AE2A 1WYGA 4JB1A 4PVHA 2W3RA 4JAYA 3GSYA 3NRZB 4PWBA 3ETRB 1MBBA 4BCAA 3EJEB 1DIIA 2Y08A 2PLSA 2E3TA 3NVZB 2Y3SA 3PQBA 2W55A 2UUVA 1QLTA 1DIQA 3FWAA 4BC9A 1W1LA 1WVFA 1W1SA 4OALA 1ZXIC 3FW8A 5I1VA 1WVEA 3S1FA 3PM9A 3NVVB 3FW7A 4PYTA 1W1RA 1N60C 3VTEA 2YVSA 3NS1B 3TSJA 4BBYA 5K8EA 5I1WA 2P13A 3S1EA 5FXDA 1W1QA 4PZFA 2P3HA 1FFUC 4ZOHB 1N5XA 4BC7A 4PWCA 5AE3A 1F0XA 2R8DA 4PVJA 3DEDA 3NVWB 2W3SA 2NQWA 2GQTA 2VFSA 1JRPA 1E8GA 1W1MA 3RJAA 3EUB3 1JROA 1AHVA 3HRDC 1AHZA 5FXPA 2BVHA 1N61C 2MBRA 3D2JA 5AE1A 2OAIA 3EJDB 3SR6B 5HHZA 1E8HA 5FXEA 1QLUA 3C0PA 5HQXA 4ML8A 1UXYA 3AM9A 2QKNA 1RM6B 4PVKA 2IPIA 1W1KA 3DQ0A 3BW7A 2R2ZA 2BVGA 1FFVC 3TX1A 5ADZA 4UD8A 2P4PA 5AWVA 2AXRA 5G5GB 1E8FA 3KJMA 3W8ZA 2VFVA 1W1JA 1DZNA 3JS8A 4MLAA 3D2HA 1E0YA 1SB3B 2EXRA 2VFTA 2W54A 4XLOA 3W8XA 4HG0A 2I0KA 5FXFA 2Q85A 5HMRA 1VAOA 1ZR6A 1HSKA 3TSHA 3FW9A 2VAOA 2GQUA 3POPA 2QPMA 2Y4GA 5G5HB 1V97A 2VFRA 3RJ8A 3B9JB 1N5WC 2Q4WA 2BVFA 3NVYB 1N63C
chains in the Genus database with same CATH topology
2RK5A 2WDWA 5L6GA 5D79A 2VFUA 3S1CA 3LLBA 1AHUA 3HSUA 2Y3RA 3W8WA 3I99A 2PLIA 1N62C 1VDVA 4O95A 2UUUA 3LAEA 5L6FA 3S1DA 3AN1A 1I19A 4EC3A 1FO4A 1MBTA 1T3QC 3D2DA 1W1OA 1FIQB 4PVEA 2O3GA 4DNSA 3AMZA 5AE2A 1WYGA 4JB1A 4PVHA 2W3RA 4JAYA 3GSYA 3NRZB 4PWBA 3ETRB 1MBBA 4BCAA 1DIIA 2Y08A 2PLSA 2E3TA 3NVZB 2Y3SA 3PQBA 2W55A 2UUVA 1QLTA 1DIQA 3FWAA 4BC9A 1W1LA 1WVFA 1W1SA 4OALA 1ZXIC 3FW8A 5I1VA 1WVEA 3S1FA 3PM9A 3NVVB 3FW7A 4PYTA 1W1RA 1N60C 3VTEA 2YVSA 3NS1B 3TSJA 4BBYA 5K8EA 5I1WA 2P13A 3S1EA 5FXDA 1W1QA 4PZFA 2P3HA 1FFUC 4ZOHB 1N5XA 4BC7A 4PWCA 5AE3A 1F0XA 2R8DA 4PVJA 3DEDA 2NQWA 2W3SA 3NVWB 2GQTA 2VFSA 1JRPA 1E8GA 1W1MA 3RJAA 3EUB3 1JROA 1AHVA 3HRDC 1AHZA 5FXPA 2BVHA 1N61C 2MBRA 3D2JA 5AE1A 2OAIA 3SR6B 5HHZA 1E8HA 5FXEA 1QLUA 3C0PA 5HQXA 4ML8A 1UXYA 3AM9A 2QKNA 1RM6B 4PVKA 2IPIA 1W1KA 3DQ0A 3BW7A 2R2ZA 2BVGA 1FFVC 3TX1A 5ADZA 4UD8A 2P4PA 5AWVA 2AXRA 5G5GB 1E8FA 3KJMA 3W8ZA 2VFVA 1W1JA 1DZNA 3JS8A 4MLAA 3D2HA 1E0YA 1SB3B 2EXRA 2VFTA 2W54A 4XLOA 3W8XA 4HG0A 2I0KA 5FXFA 2Q85A 5HMRA 1VAOA 1ZR6A 1HSKA 3TSHA 3FW9A 2VAOA 2GQUA 3POPA 2QPMA 2Y4GA 5G5HB 1V97A 2VFRA 3RJ8A 3B9JB 1N5WC 2Q4WA 2BVFA 3NVYB 1N63C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RK5 A;  5D79 A;  2VFU A;  3S1C A;  3LLB A;  1AHU A;  3W8W A;  3I99 A;  2PLI A;  1N62 C;  1VDV A;  4O95 A;  3LAE A;  3S1D A;  3AN1 A;  1I19 A;  4EC3 A;  1FO4 A;  1MBT A;  1T3Q C;  3D2D A;  1W1O A;  1FIQ B;  4PVE A;  2O3G A;  4DNS A;  3AMZ A;  5AE2 A;  1WYG A;  4JB1 A;  4PVH A;  2W3R A;  4JAY A;  3GSY A;  3NRZ B;  4PWB A;  3ETR B;  1MBB A;  4BCA A;  1DII A;  2PLS A;  2E3T A;  3NVZ B;  2W55 A;  1QLT A;  1DIQ A;  3FWA A;  4BC9 A;  1W1L A;  1WVF A;  1W1S A;  4OAL A;  1ZXI C;  3FW8 A;  1WVE A;  3S1F A;  3PM9 A;  3NVV B;  3FW7 A;  4PYT A;  1W1R A;  1N60 C;  3VTE A;  2YVS A;  3NS1 B;  3TSJ A;  4BBY A;  2P13 A;  3S1E A;  5FXD A;  1W1Q A;  4PZF A;  2P3H A;  1FFU C;  4ZOH B;  1N5X A;  4BC7 A;  4PWC A;  5AE3 A;  1F0X A;  2R8D A;  4PVJ A;  3DED A;  2NQW A;  2W3S A;  3NVW B;  2GQT A;  2VFS A;  1JRP A;  1E8G A;  1W1M A;  3EUB 3;  1JRO A;  1AHV A;  3HRD C;  1AHZ A;  5FXP A;  2BVH A;  1N61 C;  2MBR A;  3D2J A;  5AE1 A;  2OAI A;  3SR6 B;  5HHZ A;  1E8H A;  5FXE A;  1QLU A;  3C0P A;  5HQX A;  4ML8 A;  1UXY A;  3AM9 A;  2QKN A;  1RM6 B;  4PVK A;  1W1K A;  3DQ0 A;  3BW7 A;  2R2Z A;  2BVG A;  1FFV C;  3TX1 A;  5ADZ A;  4UD8 A;  2P4P A;  2AXR A;  5G5G B;  1E8F A;  3KJM A;  3W8Z A;  2VFV A;  1W1J A;  1DZN A;  3JS8 A;  4MLA A;  3D2H A;  1E0Y A;  1SB3 B;  2EXR A;  2VFT A;  2W54 A;  4XLO A;  3W8X A;  4HG0 A;  2I0K A;  5FXF A;  2Q85 A;  5HMR A;  1VAO A;  1ZR6 A;  1HSK A;  3TSH A;  3FW9 A;  2VAO A;  2GQU A;  2QPM A;  5G5H B;  1V97 A;  2VFR A;  3B9J B;  1N5W C;  2Q4W A;  2BVF A;  3NVY B;  1N63 C; 
#chains in the Genus database with same CATH topology
 2RK5 A;  2WDW A;  5L6G A;  5D79 A;  2VFU A;  3S1C A;  3LLB A;  1AHU A;  3HSU A;  2Y3R A;  3W8W A;  3I99 A;  2PLI A;  1N62 C;  1VDV A;  3EJB B;  4O95 A;  2UUU A;  3LAE A;  5L6F A;  3S1D A;  3AN1 A;  1I19 A;  4EC3 A;  1FO4 A;  1MBT A;  1T3Q C;  3D2D A;  1W1O A;  1FIQ B;  4PVE A;  2O3G A;  4DNS A;  3AMZ A;  5AE2 A;  1WYG A;  4JB1 A;  4PVH A;  2W3R A;  4JAY A;  3GSY A;  3NRZ B;  4PWB A;  3ETR B;  1MBB A;  4BCA A;  3EJE B;  1DII A;  2Y08 A;  2PLS A;  2E3T A;  3NVZ B;  2Y3S A;  3PQB A;  2W55 A;  2UUV A;  1QLT A;  1DIQ A;  3FWA A;  4BC9 A;  1W1L A;  1WVF A;  1W1S A;  4OAL A;  1ZXI C;  3FW8 A;  5I1V A;  1WVE A;  3S1F A;  3PM9 A;  3NVV B;  3FW7 A;  4PYT A;  1W1R A;  1N60 C;  3VTE A;  2YVS A;  3NS1 B;  3TSJ A;  4BBY A;  5K8E A;  5I1W A;  2P13 A;  3S1E A;  5FXD A;  1W1Q A;  4PZF A;  2P3H A;  1FFU C;  4ZOH B;  1N5X A;  4BC7 A;  4PWC A;  5AE3 A;  1F0X A;  2R8D A;  4PVJ A;  3DED A;  3NVW B;  2W3S A;  2NQW A;  2GQT A;  2VFS A;  1JRP A;  1E8G A;  1W1M A;  3RJA A;  3EUB 3;  1JRO A;  1AHV A;  3HRD C;  1AHZ A;  5FXP A;  2BVH A;  1N61 C;  2MBR A;  3D2J A;  5AE1 A;  2OAI A;  3EJD B;  3SR6 B;  5HHZ A;  1E8H A;  5FXE A;  1QLU A;  3C0P A;  5HQX A;  4ML8 A;  1UXY A;  3AM9 A;  2QKN A;  1RM6 B;  4PVK A;  2IPI A;  1W1K A;  3DQ0 A;  3BW7 A;  2R2Z A;  2BVG A;  1FFV C;  3TX1 A;  5ADZ A;  4UD8 A;  2P4P A;  5AWV A;  2AXR A;  5G5G B;  1E8F A;  3KJM A;  3W8Z A;  2VFV A;  1W1J A;  1DZN A;  3JS8 A;  4MLA A;  3D2H A;  1E0Y A;  1SB3 B;  2EXR A;  2VFT A;  2W54 A;  4XLO A;  3W8X A;  4HG0 A;  2I0K A;  5FXF A;  2Q85 A;  5HMR A;  1VAO A;  1ZR6 A;  1HSK A;  3TSH A;  3FW9 A;  2VAO A;  2GQU A;  3POP A;  2QPM A;  2Y4G A;  5G5H B;  1V97 A;  2VFR A;  3RJ8 A;  3B9J B;  1N5W C;  2Q4W A;  2BVF A;  3NVY B;  1N63 C; 
#chains in the Genus database with same CATH homology
 2RK5 A;  2WDW A;  5L6G A;  5D79 A;  2VFU A;  3S1C A;  3LLB A;  1AHU A;  3HSU A;  2Y3R A;  3W8W A;  3I99 A;  2PLI A;  1N62 C;  1VDV A;  4O95 A;  2UUU A;  3LAE A;  5L6F A;  3S1D A;  3AN1 A;  1I19 A;  4EC3 A;  1FO4 A;  1MBT A;  1T3Q C;  3D2D A;  1W1O A;  1FIQ B;  4PVE A;  2O3G A;  4DNS A;  3AMZ A;  5AE2 A;  1WYG A;  4JB1 A;  4PVH A;  2W3R A;  4JAY A;  3GSY A;  3NRZ B;  4PWB A;  3ETR B;  1MBB A;  4BCA A;  1DII A;  2Y08 A;  2PLS A;  2E3T A;  3NVZ B;  2Y3S A;  3PQB A;  2W55 A;  2UUV A;  1QLT A;  1DIQ A;  3FWA A;  4BC9 A;  1W1L A;  1WVF A;  1W1S A;  4OAL A;  1ZXI C;  3FW8 A;  5I1V A;  1WVE A;  3S1F A;  3PM9 A;  3NVV B;  3FW7 A;  4PYT A;  1W1R A;  1N60 C;  3VTE A;  2YVS A;  3NS1 B;  3TSJ A;  4BBY A;  5K8E A;  5I1W A;  2P13 A;  3S1E A;  5FXD A;  1W1Q A;  4PZF A;  2P3H A;  1FFU C;  4ZOH B;  1N5X A;  4BC7 A;  4PWC A;  5AE3 A;  1F0X A;  2R8D A;  4PVJ A;  3DED A;  2NQW A;  2W3S A;  3NVW B;  2GQT A;  2VFS A;  1JRP A;  1E8G A;  1W1M A;  3RJA A;  3EUB 3;  1JRO A;  1AHV A;  3HRD C;  1AHZ A;  5FXP A;  2BVH A;  1N61 C;  2MBR A;  3D2J A;  5AE1 A;  2OAI A;  3SR6 B;  5HHZ A;  1E8H A;  5FXE A;  1QLU A;  3C0P A;  5HQX A;  4ML8 A;  1UXY A;  3AM9 A;  2QKN A;  1RM6 B;  4PVK A;  2IPI A;  1W1K A;  3DQ0 A;  3BW7 A;  2R2Z A;  2BVG A;  1FFV C;  3TX1 A;  5ADZ A;  4UD8 A;  2P4P A;  5AWV A;  2AXR A;  5G5G B;  1E8F A;  3KJM A;  3W8Z A;  2VFV A;  1W1J A;  1DZN A;  3JS8 A;  4MLA A;  3D2H A;  1E0Y A;  1SB3 B;  2EXR A;  2VFT A;  2W54 A;  4XLO A;  3W8X A;  4HG0 A;  2I0K A;  5FXF A;  2Q85 A;  5HMR A;  1VAO A;  1ZR6 A;  1HSK A;  3TSH A;  3FW9 A;  2VAO A;  2GQU A;  3POP A;  2QPM A;  2Y4G A;  5G5H B;  1V97 A;  2VFR A;  3RJ8 A;  3B9J B;  1N5W C;  2Q4W A;  2BVF A;  3NVY B;  1N63 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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