1W1SA

Plant cytokinin dehydrogenase in complex with benzylaminopurine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords CYTOKININ DEHYDROGENASE
total genus 170
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1sA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1sA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1sA03
2VFVA 1AHUA 3HRDC 5HMRA 4PYTA 3PM9A 5AE2A 1VDVA 2NQWA 3VTEA 3FW9A 1AHVA 1MBBA 4PVJA 1WVFA 4DNSA 4O95A 1N62C 4EC3A 4UD8A 2W3RA 3LLBA 2GQUA 1DZNA 1WYGA 4JB1A 3TX1A 2R2ZA 5G5GB 2QPMA 1QLUA 2BVGA 3S1DA 3D2JA 2W55A 5FXEA 3DEDA 5FXPA 4PZFA 3FW7A 3NVYB 3TSJA 4BC9A 4BCAA 1W1RA 4BC7A 2MBRA 1ZR6A 2RK5A 1W1JA 3EUB3 1W1SA 1QLTA 2Q4WA 3AN1A 2P13A 5AE1A 4PVHA 2GQTA 1WVEA 1V97A 5FXDA 2QKNA 4ZOHB 5FXFA 3NVZB 3D2HA 1FO4A 3AM9A 3FWAA 1HSKA 2BVHA 1W1QA 4HG0A 1DIQA 1FFVC 1E8FA 1N5XA 2PLSA 4PVKA 4JAYA 1N63C 2VFRA 3SR6B 2P4PA 4ML8A 3LAEA 1JROA 1FFUC 3W8XA 3D2DA 3TSHA 1VAOA 1E8GA 4PVEA 2OAIA 2VFUA 2PLIA 4BBYA 2AXRA 4PWCA 1N60C 3NVWB 1UXYA 5HHZA 1W1OA 3KJMA 1W1MA 5ADZA 5G5HB 5HQXA 3JS8A 3BW7A 2YVSA 2BVFA 3S1CA 1I19A 2VAOA 3NS1B 2VFTA 3NVVB 2O3GA 1E8HA 1E0YA 2EXRA 3NRZB 3W8ZA 1N61C 1W1KA 1T3QC 5D79A 4OALA 3B9JB 1DIIA 2W54A 1MBTA 2W3SA 3S1FA 3AMZA 1AHZA 5AE3A 2VFSA 3W8WA 1F0XA 3C0PA 1FIQB 2R8DA 3FW8A 2Q85A 3I99A 1RM6B 3ETRB 2P3HA 4XLOA 4MLAA 3S1EA 1N5WC 3GSYA 1SB3B 3DQ0A 1W1LA 4PWBA 1JRPA 1ZXIC 2E3TA 2I0KA
chains in the Genus database with same CATH superfamily
2VFVA 1AHUA 3HRDC 5HMRA 4PYTA 3PM9A 5AE2A 1VDVA 3RJAA 2NQWA 3VTEA 3FW9A 1AHVA 1MBBA 4PVJA 1WVFA 4DNSA 4O95A 1N62C 4EC3A 4UD8A 2W3RA 3LLBA 2GQUA 3POPA 1DZNA 1WYGA 4JB1A 3TX1A 2R2ZA 5G5GB 2QPMA 1QLUA 2BVGA 3S1DA 3D2JA 2W55A 5FXEA 3DEDA 5FXPA 4PZFA 3FW7A 3NVYB 2UUUA 3TSJA 4BC9A 4BCAA 1W1RA 4BC7A 2MBRA 5I1VA 1ZR6A 2RK5A 1W1JA 3EUB3 1W1SA 3PQBA 1QLTA 2Q4WA 3AN1A 3EJBB 2P13A 5AE1A 4PVHA 2GQTA 5K8EA 1WVEA 1V97A 5FXDA 2QKNA 4ZOHB 5FXFA 3NVZB 3D2HA 1FO4A 3AM9A 3FWAA 1HSKA 2BVHA 1W1QA 4HG0A 5I1WA 1DIQA 1FFVC 1E8FA 1N5XA 3EJDB 2PLSA 2Y3RA 4PVKA 4JAYA 1N63C 2VFRA 3SR6B 2P4PA 4ML8A 3LAEA 1JROA 1FFUC 3W8XA 2IPIA 3D2DA 3TSHA 1VAOA 1E8GA 4PVEA 2OAIA 2VFUA 3HSUA 2PLIA 4BBYA 2AXRA 4PWCA 1N60C 3NVWB 1UXYA 5HHZA 1W1OA 3KJMA 1W1MA 2WDWA 5ADZA 5G5HB 5HQXA 3JS8A 3BW7A 2YVSA 2BVFA 3S1CA 1I19A 2VAOA 3NS1B 2VFTA 3NVVB 2O3GA 1E8HA 1E0YA 2EXRA 3NRZB 3W8ZA 5L6FA 1N61C 1W1KA 1T3QC 5D79A 4OALA 3B9JB 1DIIA 2W54A 1MBTA 2Y3SA 2W3SA 2Y08A 3S1FA 3AMZA 1AHZA 5AE3A 3RJ8A 2VFSA 5AWVA 3W8WA 1F0XA 3C0PA 1FIQB 2R8DA 3FW8A 2Q85A 3I99A 2UUVA 1RM6B 3ETRB 2P3HA 4XLOA 3EJEB 4MLAA 3S1EA 1N5WC 5L6GA 3GSYA 1SB3B 3DQ0A 1W1LA 4PWBA 1JRPA 1ZXIC 2E3TA 2Y4GA 2I0KA
chains in the Genus database with same CATH topology
2VFVA 1AHUA 3HRDC 5HMRA 4PYTA 3PM9A 5AE2A 1VDVA 3RJAA 2NQWA 3VTEA 3FW9A 1AHVA 1MBBA 4PVJA 1WVFA 4DNSA 4O95A 1N62C 4EC3A 4UD8A 2W3RA 3LLBA 2GQUA 3POPA 1DZNA 1WYGA 4JB1A 3TX1A 2R2ZA 5G5GB 2QPMA 1QLUA 2BVGA 3S1DA 3D2JA 2W55A 5FXEA 3DEDA 5FXPA 4PZFA 3FW7A 3NVYB 2UUUA 3TSJA 4BC9A 4BCAA 1W1RA 4BC7A 2MBRA 5I1VA 1ZR6A 2RK5A 1W1JA 3EUB3 1W1SA 3PQBA 1QLTA 2Q4WA 3AN1A 2P13A 5AE1A 4PVHA 2GQTA 5K8EA 1WVEA 1V97A 5FXDA 2QKNA 4ZOHB 5FXFA 3NVZB 3D2HA 1FO4A 3AM9A 3FWAA 1HSKA 2BVHA 1W1QA 4HG0A 5I1WA 1DIQA 1FFVC 1E8FA 1N5XA 2PLSA 2Y3RA 4PVKA 4JAYA 1N63C 2VFRA 3SR6B 2P4PA 4ML8A 3LAEA 1JROA 1FFUC 3W8XA 2IPIA 3D2DA 3TSHA 1VAOA 1E8GA 4PVEA 2OAIA 2VFUA 3HSUA 2PLIA 4BBYA 2AXRA 4PWCA 1N60C 3NVWB 1UXYA 5HHZA 1W1OA 3KJMA 1W1MA 2WDWA 5ADZA 5G5HB 5HQXA 3JS8A 3BW7A 2YVSA 2BVFA 3S1CA 1I19A 2VAOA 3NS1B 2VFTA 3NVVB 2O3GA 1E8HA 1E0YA 2EXRA 3NRZB 3W8ZA 5L6FA 1N61C 1W1KA 1T3QC 5D79A 4OALA 3B9JB 1DIIA 2W54A 1MBTA 2Y3SA 2W3SA 2Y08A 3S1FA 3AMZA 1AHZA 5AE3A 3RJ8A 2VFSA 5AWVA 3W8WA 1F0XA 3C0PA 1FIQB 2R8DA 3FW8A 2Q85A 3I99A 2UUVA 1RM6B 3ETRB 2P3HA 4XLOA 4MLAA 3S1EA 1N5WC 5L6GA 3GSYA 1SB3B 3DQ0A 1W1LA 4PWBA 1JRPA 1ZXIC 2E3TA 2Y4GA 2I0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFV A;  1AHU A;  3HRD C;  5HMR A;  4PYT A;  3PM9 A;  5AE2 A;  1VDV A;  2NQW A;  3VTE A;  3FW9 A;  1AHV A;  1MBB A;  4PVJ A;  1WVF A;  4DNS A;  4O95 A;  1N62 C;  4EC3 A;  4UD8 A;  2W3R A;  3LLB A;  2GQU A;  1DZN A;  1WYG A;  4JB1 A;  3TX1 A;  2R2Z A;  5G5G B;  2QPM A;  1QLU A;  2BVG A;  3S1D A;  3D2J A;  2W55 A;  5FXE A;  3DED A;  5FXP A;  4PZF A;  3FW7 A;  3NVY B;  3TSJ A;  4BC9 A;  4BCA A;  1W1R A;  4BC7 A;  2MBR A;  1ZR6 A;  2RK5 A;  1W1J A;  3EUB 3;  1W1S A;  1QLT A;  2Q4W A;  3AN1 A;  2P13 A;  5AE1 A;  4PVH A;  2GQT A;  1WVE A;  1V97 A;  5FXD A;  2QKN A;  4ZOH B;  5FXF A;  3NVZ B;  3D2H A;  1FO4 A;  3AM9 A;  3FWA A;  1HSK A;  2BVH A;  1W1Q A;  4HG0 A;  1DIQ A;  1FFV C;  1E8F A;  1N5X A;  2PLS A;  4PVK A;  4JAY A;  1N63 C;  2VFR A;  3SR6 B;  2P4P A;  4ML8 A;  3LAE A;  1JRO A;  1FFU C;  3W8X A;  3D2D A;  3TSH A;  1VAO A;  1E8G A;  4PVE A;  2OAI A;  2VFU A;  2PLI A;  4BBY A;  2AXR A;  4PWC A;  1N60 C;  3NVW B;  1UXY A;  5HHZ A;  1W1O A;  3KJM A;  1W1M A;  5ADZ A;  5G5H B;  5HQX A;  3JS8 A;  3BW7 A;  2YVS A;  2BVF A;  3S1C A;  1I19 A;  2VAO A;  3NS1 B;  2VFT A;  3NVV B;  2O3G A;  1E8H A;  1E0Y A;  2EXR A;  3NRZ B;  3W8Z A;  1N61 C;  1W1K A;  1T3Q C;  5D79 A;  4OAL A;  3B9J B;  1DII A;  2W54 A;  1MBT A;  2W3S A;  3S1F A;  3AMZ A;  1AHZ A;  5AE3 A;  2VFS A;  3W8W A;  1F0X A;  3C0P A;  1FIQ B;  2R8D A;  3FW8 A;  2Q85 A;  3I99 A;  1RM6 B;  3ETR B;  2P3H A;  4XLO A;  4MLA A;  3S1E A;  1N5W C;  3GSY A;  1SB3 B;  3DQ0 A;  1W1L A;  4PWB A;  1JRP A;  1ZXI C;  2E3T A;  2I0K A; 
#chains in the Genus database with same CATH topology
 2VFV A;  1AHU A;  3HRD C;  5HMR A;  4PYT A;  3PM9 A;  5AE2 A;  1VDV A;  3RJA A;  2NQW A;  3VTE A;  3FW9 A;  1AHV A;  1MBB A;  4PVJ A;  1WVF A;  4DNS A;  4O95 A;  1N62 C;  4EC3 A;  4UD8 A;  2W3R A;  3LLB A;  2GQU A;  3POP A;  1DZN A;  1WYG A;  4JB1 A;  3TX1 A;  2R2Z A;  5G5G B;  2QPM A;  1QLU A;  2BVG A;  3S1D A;  3D2J A;  2W55 A;  5FXE A;  3DED A;  5FXP A;  4PZF A;  3FW7 A;  3NVY B;  2UUU A;  3TSJ A;  4BC9 A;  4BCA A;  1W1R A;  4BC7 A;  2MBR A;  5I1V A;  1ZR6 A;  2RK5 A;  1W1J A;  3EUB 3;  1W1S A;  3PQB A;  1QLT A;  2Q4W A;  3AN1 A;  3EJB B;  2P13 A;  5AE1 A;  4PVH A;  2GQT A;  5K8E A;  1WVE A;  1V97 A;  5FXD A;  2QKN A;  4ZOH B;  5FXF A;  3NVZ B;  3D2H A;  1FO4 A;  3AM9 A;  3FWA A;  1HSK A;  2BVH A;  1W1Q A;  4HG0 A;  5I1W A;  1DIQ A;  1FFV C;  1E8F A;  1N5X A;  3EJD B;  2PLS A;  2Y3R A;  4PVK A;  4JAY A;  1N63 C;  2VFR A;  3SR6 B;  2P4P A;  4ML8 A;  3LAE A;  1JRO A;  1FFU C;  3W8X A;  2IPI A;  3D2D A;  3TSH A;  1VAO A;  1E8G A;  4PVE A;  2OAI A;  2VFU A;  3HSU A;  2PLI A;  4BBY A;  2AXR A;  4PWC A;  1N60 C;  3NVW B;  1UXY A;  5HHZ A;  1W1O A;  3KJM A;  1W1M A;  2WDW A;  5ADZ A;  5G5H B;  5HQX A;  3JS8 A;  3BW7 A;  2YVS A;  2BVF A;  3S1C A;  1I19 A;  2VAO A;  3NS1 B;  2VFT A;  3NVV B;  2O3G A;  1E8H A;  1E0Y A;  2EXR A;  3NRZ B;  3W8Z A;  5L6F A;  1N61 C;  1W1K A;  1T3Q C;  5D79 A;  4OAL A;  3B9J B;  1DII A;  2W54 A;  1MBT A;  2Y3S A;  2W3S A;  2Y08 A;  3S1F A;  3AMZ A;  1AHZ A;  5AE3 A;  3RJ8 A;  2VFS A;  5AWV A;  3W8W A;  1F0X A;  3C0P A;  1FIQ B;  2R8D A;  3FW8 A;  2Q85 A;  3I99 A;  2UUV A;  1RM6 B;  3ETR B;  2P3H A;  4XLO A;  3EJE B;  4MLA A;  3S1E A;  1N5W C;  5L6G A;  3GSY A;  1SB3 B;  3DQ0 A;  1W1L A;  4PWB A;  1JRP A;  1ZXI C;  2E3T A;  2Y4G A;  2I0K A; 
#chains in the Genus database with same CATH homology
 2VFV A;  1AHU A;  3HRD C;  5HMR A;  4PYT A;  3PM9 A;  5AE2 A;  1VDV A;  3RJA A;  2NQW A;  3VTE A;  3FW9 A;  1AHV A;  1MBB A;  4PVJ A;  1WVF A;  4DNS A;  4O95 A;  1N62 C;  4EC3 A;  4UD8 A;  2W3R A;  3LLB A;  2GQU A;  3POP A;  1DZN A;  1WYG A;  4JB1 A;  3TX1 A;  2R2Z A;  5G5G B;  2QPM A;  1QLU A;  2BVG A;  3S1D A;  3D2J A;  2W55 A;  5FXE A;  3DED A;  5FXP A;  4PZF A;  3FW7 A;  3NVY B;  2UUU A;  3TSJ A;  4BC9 A;  4BCA A;  1W1R A;  4BC7 A;  2MBR A;  5I1V A;  1ZR6 A;  2RK5 A;  1W1J A;  3EUB 3;  1W1S A;  3PQB A;  1QLT A;  2Q4W A;  3AN1 A;  2P13 A;  5AE1 A;  4PVH A;  2GQT A;  5K8E A;  1WVE A;  1V97 A;  5FXD A;  2QKN A;  4ZOH B;  5FXF A;  3NVZ B;  3D2H A;  1FO4 A;  3AM9 A;  3FWA A;  1HSK A;  2BVH A;  1W1Q A;  4HG0 A;  5I1W A;  1DIQ A;  1FFV C;  1E8F A;  1N5X A;  2PLS A;  2Y3R A;  4PVK A;  4JAY A;  1N63 C;  2VFR A;  3SR6 B;  2P4P A;  4ML8 A;  3LAE A;  1JRO A;  1FFU C;  3W8X A;  2IPI A;  3D2D A;  3TSH A;  1VAO A;  1E8G A;  4PVE A;  2OAI A;  2VFU A;  3HSU A;  2PLI A;  4BBY A;  2AXR A;  4PWC A;  1N60 C;  3NVW B;  1UXY A;  5HHZ A;  1W1O A;  3KJM A;  1W1M A;  2WDW A;  5ADZ A;  5G5H B;  5HQX A;  3JS8 A;  3BW7 A;  2YVS A;  2BVF A;  3S1C A;  1I19 A;  2VAO A;  3NS1 B;  2VFT A;  3NVV B;  2O3G A;  1E8H A;  1E0Y A;  2EXR A;  3NRZ B;  3W8Z A;  5L6F A;  1N61 C;  1W1K A;  1T3Q C;  5D79 A;  4OAL A;  3B9J B;  1DII A;  2W54 A;  1MBT A;  2Y3S A;  2W3S A;  2Y08 A;  3S1F A;  3AMZ A;  1AHZ A;  5AE3 A;  3RJ8 A;  2VFS A;  5AWV A;  3W8W A;  1F0X A;  3C0P A;  1FIQ B;  2R8D A;  3FW8 A;  2Q85 A;  3I99 A;  2UUV A;  1RM6 B;  3ETR B;  2P3H A;  4XLO A;  4MLA A;  3S1E A;  1N5W C;  5L6G A;  3GSY A;  1SB3 B;  3DQ0 A;  1W1L A;  4PWB A;  1JRP A;  1ZXI C;  2E3T A;  2Y4G A;  2I0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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