2BVFA

Crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 3 (p1)
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
453
structure length
453
Chain Sequence
KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidase
molecule keywords 6-HYDROXY-D-NICOTINE OXIDASE
publication title Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans.
pubmed doi rcsb
source organism Arthrobacter nicotinovorans
total genus 145
structure length 453
sequence length 453
chains with identical sequence B
ec nomenclature ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2bvfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2bvfA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2bvfA03
2VFTA 5HMRA 2IPIA 3SR6B 1N5XA 3S1DA 2VFUA 1DIQA 1N5WC 1W1LA 3NVWB 3TSHA 1RM6B 3LLBA 2R8DA 1W1JA 2PLIA 1DZNA 4BC9A 3NVVB 2VAOA 1W1MA 3D2HA 3D2JA 3NS1B 5FXDA 4DNSA 3NVZB 4BBYA 3DQ0A 1ZXIC 1E8GA 4ML8A 5AWVA 3DEDA 3RJ8A 5HHZA 3FW7A 1FFUC 2MBRA 3EUB3 3S1EA 5AE2A 4PWCA 4PZFA 4PVKA 2W3SA 2OAIA 4UD8A 3VTEA 2W55A 2YVSA 3RJAA 3AN1A 1VAOA 1AHVA 2BVHA 2P3HA 4JB1A 4PVEA 2GQUA 2W54A 1JRPA 5G5HB 1MBBA 2Q85A 1WVEA 5FXPA 1T3QC 1W1SA 2QKNA 3TX1A 2BVFA 2WDWA 4PYTA 2O3GA 4PWBA 2E3TA 3NRZB 3FWAA 3GSYA 4BCAA 3AMZA 3FW8A 5D79A 1FFVC 1AHZA 2PLSA 4JAYA 3HRDC 5I1VA 5HQXA 1ZR6A 5FXFA 1FO4A 1VDVA 1QLTA 3HSUA 1MBTA 2W3RA 3S1FA 1V97A 1UXYA 1N61C 3TSJA 1W1QA 3W8ZA 3C0PA 3POPA 1FIQB 2GQTA 3JS8A 2P4PA 3S1CA 5I1WA 1W1OA 4PVJA 5AE3A 2VFRA 1N60C 3FW9A 4O95A 2Y4GA 5L6GA 3PM9A 5K8EA 5FXEA 4OALA 3NVYB 1I19A 5G5GB 1SB3B 1E8HA 1QLUA 5AE1A 3W8WA 2RK5A 3LAEA 1N62C 2QPMA 2BVGA 3KJMA 2R2ZA 5L6FA 3PQBA 4ZOHB 3BW7A 2Y08A 4PVHA 2VFSA 1F0XA 3D2DA 1W1RA 2P13A 3B9JB 1AHUA 5ADZA 1JROA 4XLOA 2VFVA 2Y3RA 4HG0A 4BC7A 3W8XA 2Y3SA 2NQWA 3I99A 1E8FA 1E0YA 2Q4WA 1DIIA 2EXRA 2I0KA 1HSKA 4EC3A 3AM9A 2AXRA 4MLAA 1N63C 1WYGA 3ETRB 1WVFA 1W1KA
chains in the Genus database with same CATH superfamily
2VFTA 5HMRA 2IPIA 3SR6B 1N5XA 3S1DA 2VFUA 1DIQA 1N5WC 1W1LA 3NVWB 3TSHA 1RM6B 3LLBA 2R8DA 1W1JA 2PLIA 1DZNA 4BC9A 3NVVB 2VAOA 1W1MA 3D2HA 3D2JA 3NS1B 5FXDA 4DNSA 3NVZB 4BBYA 3DQ0A 1ZXIC 1E8GA 4ML8A 5AWVA 3DEDA 3RJ8A 5HHZA 3FW7A 1FFUC 2MBRA 3EUB3 3S1EA 5AE2A 4PWCA 4PZFA 4PVKA 2W3SA 2OAIA 4UD8A 3VTEA 2W55A 2YVSA 3RJAA 3AN1A 1VAOA 1AHVA 2BVHA 2P3HA 4JB1A 4PVEA 2GQUA 2W54A 1JRPA 5G5HB 1MBBA 2Q85A 1WVEA 5FXPA 1T3QC 1W1SA 2QKNA 3TX1A 2BVFA 2WDWA 4PYTA 2O3GA 4PWBA 2E3TA 3NRZB 3FWAA 2UUUA 3GSYA 4BCAA 3AMZA 3FW8A 5D79A 1FFVC 1AHZA 2PLSA 4JAYA 3HRDC 5I1VA 5HQXA 1ZR6A 5FXFA 1FO4A 1VDVA 1QLTA 3HSUA 1MBTA 2W3RA 3S1FA 1V97A 1UXYA 1N61C 3TSJA 1W1QA 2UUVA 3EJEB 3W8ZA 3C0PA 3POPA 1FIQB 2GQTA 3JS8A 2P4PA 3S1CA 5I1WA 1W1OA 4PVJA 5AE3A 2VFRA 1N60C 3FW9A 4O95A 2Y4GA 5L6GA 3EJDB 3PM9A 5K8EA 5FXEA 4OALA 3NVYB 1I19A 5G5GB 1SB3B 1E8HA 1QLUA 5AE1A 3W8WA 2RK5A 3LAEA 1N62C 2QPMA 2BVGA 3KJMA 2R2ZA 3EJBB 5L6FA 3PQBA 4ZOHB 3BW7A 2Y08A 4PVHA 2VFSA 1F0XA 3D2DA 1W1RA 2P13A 3B9JB 1AHUA 5ADZA 1JROA 4XLOA 2VFVA 2Y3RA 4HG0A 4BC7A 3W8XA 2Y3SA 2NQWA 3I99A 1E8FA 1E0YA 2Q4WA 1DIIA 2EXRA 2I0KA 1HSKA 4EC3A 3AM9A 2AXRA 4MLAA 1N63C 1WYGA 3ETRB 1WVFA 1W1KA
chains in the Genus database with same CATH topology
2VFTA 5HMRA 2IPIA 3SR6B 1N5XA 3S1DA 2VFUA 1DIQA 1N5WC 1W1LA 3NVWB 3TSHA 1RM6B 3LLBA 2R8DA 1W1JA 2PLIA 1DZNA 4BC9A 3NVVB 2VAOA 1W1MA 3D2HA 3D2JA 3NS1B 5FXDA 4DNSA 3NVZB 4BBYA 3DQ0A 1ZXIC 1E8GA 4ML8A 5AWVA 3DEDA 3RJ8A 5HHZA 3FW7A 1FFUC 2MBRA 3EUB3 3S1EA 5AE2A 4PWCA 4PZFA 4PVKA 2W3SA 2OAIA 4UD8A 3VTEA 2W55A 2YVSA 3RJAA 3AN1A 1VAOA 1AHVA 2BVHA 2P3HA 4JB1A 4PVEA 2GQUA 2W54A 1JRPA 5G5HB 1MBBA 2Q85A 1WVEA 5FXPA 1T3QC 1W1SA 2QKNA 3TX1A 2BVFA 2WDWA 4PYTA 2O3GA 4PWBA 2E3TA 3NRZB 3FWAA 2UUUA 3GSYA 4BCAA 3AMZA 3FW8A 5D79A 1FFVC 1AHZA 2PLSA 4JAYA 3HRDC 5I1VA 5HQXA 1ZR6A 5FXFA 1FO4A 1VDVA 1QLTA 3HSUA 1MBTA 2W3RA 3S1FA 1V97A 1UXYA 1N61C 3TSJA 1W1QA 2UUVA 3W8ZA 3C0PA 3POPA 1FIQB 2GQTA 3JS8A 2P4PA 3S1CA 5I1WA 1W1OA 4PVJA 5AE3A 2VFRA 1N60C 3FW9A 4O95A 2Y4GA 5L6GA 3PM9A 5K8EA 5FXEA 4OALA 3NVYB 1I19A 5G5GB 1SB3B 1E8HA 1QLUA 5AE1A 3W8WA 2RK5A 3LAEA 1N62C 2QPMA 2BVGA 3KJMA 2R2ZA 5L6FA 3PQBA 4ZOHB 3BW7A 2Y08A 4PVHA 2VFSA 1F0XA 3D2DA 1W1RA 2P13A 3B9JB 1AHUA 5ADZA 1JROA 4XLOA 2VFVA 2Y3RA 4HG0A 4BC7A 3W8XA 2Y3SA 2NQWA 3I99A 1E8FA 1E0YA 2Q4WA 1DIIA 2EXRA 2I0KA 1HSKA 4EC3A 3AM9A 2AXRA 4MLAA 1N63C 1WYGA 3ETRB 1WVFA 1W1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFT A;  5HMR A;  2IPI A;  3SR6 B;  1N5X A;  3S1D A;  2VFU A;  1DIQ A;  1N5W C;  1W1L A;  3NVW B;  3TSH A;  1RM6 B;  3LLB A;  2R8D A;  1W1J A;  2PLI A;  1DZN A;  4BC9 A;  3NVV B;  2VAO A;  1W1M A;  3D2H A;  3D2J A;  3NS1 B;  5FXD A;  4DNS A;  3NVZ B;  4BBY A;  3DQ0 A;  1ZXI C;  1E8G A;  4ML8 A;  5AWV A;  3DED A;  3RJ8 A;  5HHZ A;  3FW7 A;  1FFU C;  2MBR A;  3EUB 3;  3S1E A;  5AE2 A;  4PWC A;  4PZF A;  4PVK A;  2W3S A;  2OAI A;  4UD8 A;  3VTE A;  2W55 A;  2YVS A;  3RJA A;  3AN1 A;  1VAO A;  1AHV A;  2BVH A;  2P3H A;  4JB1 A;  4PVE A;  2GQU A;  2W54 A;  1JRP A;  5G5H B;  1MBB A;  2Q85 A;  1WVE A;  5FXP A;  1T3Q C;  1W1S A;  2QKN A;  3TX1 A;  2BVF A;  2WDW A;  4PYT A;  2O3G A;  4PWB A;  2E3T A;  3NRZ B;  3FWA A;  3GSY A;  4BCA A;  3AMZ A;  3FW8 A;  5D79 A;  1FFV C;  1AHZ A;  2PLS A;  4JAY A;  3HRD C;  5I1V A;  5HQX A;  1ZR6 A;  5FXF A;  1FO4 A;  1VDV A;  1QLT A;  3HSU A;  1MBT A;  2W3R A;  3S1F A;  1V97 A;  1UXY A;  1N61 C;  3TSJ A;  1W1Q A;  3W8Z A;  3C0P A;  3POP A;  1FIQ B;  2GQT A;  3JS8 A;  2P4P A;  3S1C A;  5I1W A;  1W1O A;  4PVJ A;  5AE3 A;  2VFR A;  1N60 C;  3FW9 A;  4O95 A;  2Y4G A;  5L6G A;  3PM9 A;  5K8E A;  5FXE A;  4OAL A;  3NVY B;  1I19 A;  5G5G B;  1SB3 B;  1E8H A;  1QLU A;  5AE1 A;  3W8W A;  2RK5 A;  3LAE A;  1N62 C;  2QPM A;  2BVG A;  3KJM A;  2R2Z A;  5L6F A;  3PQB A;  4ZOH B;  3BW7 A;  2Y08 A;  4PVH A;  2VFS A;  1F0X A;  3D2D A;  1W1R A;  2P13 A;  3B9J B;  1AHU A;  5ADZ A;  1JRO A;  4XLO A;  2VFV A;  2Y3R A;  4HG0 A;  4BC7 A;  3W8X A;  2Y3S A;  2NQW A;  3I99 A;  1E8F A;  1E0Y A;  2Q4W A;  1DII A;  2EXR A;  2I0K A;  1HSK A;  4EC3 A;  3AM9 A;  2AXR A;  4MLA A;  1N63 C;  1WYG A;  3ETR B;  1WVF A;  1W1K A; 
#chains in the Genus database with same CATH topology
 2VFT A;  5HMR A;  2IPI A;  3SR6 B;  1N5X A;  3S1D A;  2VFU A;  1DIQ A;  1N5W C;  1W1L A;  3NVW B;  3TSH A;  1RM6 B;  3LLB A;  2R8D A;  1W1J A;  2PLI A;  1DZN A;  4BC9 A;  3NVV B;  2VAO A;  1W1M A;  3D2H A;  3D2J A;  3NS1 B;  5FXD A;  4DNS A;  3NVZ B;  4BBY A;  3DQ0 A;  1ZXI C;  1E8G A;  4ML8 A;  5AWV A;  3DED A;  3RJ8 A;  5HHZ A;  3FW7 A;  1FFU C;  2MBR A;  3EUB 3;  3S1E A;  5AE2 A;  4PWC A;  4PZF A;  4PVK A;  2W3S A;  2OAI A;  4UD8 A;  3VTE A;  2W55 A;  2YVS A;  3RJA A;  3AN1 A;  1VAO A;  1AHV A;  2BVH A;  2P3H A;  4JB1 A;  4PVE A;  2GQU A;  2W54 A;  1JRP A;  5G5H B;  1MBB A;  2Q85 A;  1WVE A;  5FXP A;  1T3Q C;  1W1S A;  2QKN A;  3TX1 A;  2BVF A;  2WDW A;  4PYT A;  2O3G A;  4PWB A;  2E3T A;  3NRZ B;  3FWA A;  2UUU A;  3GSY A;  4BCA A;  3AMZ A;  3FW8 A;  5D79 A;  1FFV C;  1AHZ A;  2PLS A;  4JAY A;  3HRD C;  5I1V A;  5HQX A;  1ZR6 A;  5FXF A;  1FO4 A;  1VDV A;  1QLT A;  3HSU A;  1MBT A;  2W3R A;  3S1F A;  1V97 A;  1UXY A;  1N61 C;  3TSJ A;  1W1Q A;  2UUV A;  3EJE B;  3W8Z A;  3C0P A;  3POP A;  1FIQ B;  2GQT A;  3JS8 A;  2P4P A;  3S1C A;  5I1W A;  1W1O A;  4PVJ A;  5AE3 A;  2VFR A;  1N60 C;  3FW9 A;  4O95 A;  2Y4G A;  5L6G A;  3EJD B;  3PM9 A;  5K8E A;  5FXE A;  4OAL A;  3NVY B;  1I19 A;  5G5G B;  1SB3 B;  1E8H A;  1QLU A;  5AE1 A;  3W8W A;  2RK5 A;  3LAE A;  1N62 C;  2QPM A;  2BVG A;  3KJM A;  2R2Z A;  3EJB B;  5L6F A;  3PQB A;  4ZOH B;  3BW7 A;  2Y08 A;  4PVH A;  2VFS A;  1F0X A;  3D2D A;  1W1R A;  2P13 A;  3B9J B;  1AHU A;  5ADZ A;  1JRO A;  4XLO A;  2VFV A;  2Y3R A;  4HG0 A;  4BC7 A;  3W8X A;  2Y3S A;  2NQW A;  3I99 A;  1E8F A;  1E0Y A;  2Q4W A;  1DII A;  2EXR A;  2I0K A;  1HSK A;  4EC3 A;  3AM9 A;  2AXR A;  4MLA A;  1N63 C;  1WYG A;  3ETR B;  1WVF A;  1W1K A; 
#chains in the Genus database with same CATH homology
 2VFT A;  5HMR A;  2IPI A;  3SR6 B;  1N5X A;  3S1D A;  2VFU A;  1DIQ A;  1N5W C;  1W1L A;  3NVW B;  3TSH A;  1RM6 B;  3LLB A;  2R8D A;  1W1J A;  2PLI A;  1DZN A;  4BC9 A;  3NVV B;  2VAO A;  1W1M A;  3D2H A;  3D2J A;  3NS1 B;  5FXD A;  4DNS A;  3NVZ B;  4BBY A;  3DQ0 A;  1ZXI C;  1E8G A;  4ML8 A;  5AWV A;  3DED A;  3RJ8 A;  5HHZ A;  3FW7 A;  1FFU C;  2MBR A;  3EUB 3;  3S1E A;  5AE2 A;  4PWC A;  4PZF A;  4PVK A;  2W3S A;  2OAI A;  4UD8 A;  3VTE A;  2W55 A;  2YVS A;  3RJA A;  3AN1 A;  1VAO A;  1AHV A;  2BVH A;  2P3H A;  4JB1 A;  4PVE A;  2GQU A;  2W54 A;  1JRP A;  5G5H B;  1MBB A;  2Q85 A;  1WVE A;  5FXP A;  1T3Q C;  1W1S A;  2QKN A;  3TX1 A;  2BVF A;  2WDW A;  4PYT A;  2O3G A;  4PWB A;  2E3T A;  3NRZ B;  3FWA A;  2UUU A;  3GSY A;  4BCA A;  3AMZ A;  3FW8 A;  5D79 A;  1FFV C;  1AHZ A;  2PLS A;  4JAY A;  3HRD C;  5I1V A;  5HQX A;  1ZR6 A;  5FXF A;  1FO4 A;  1VDV A;  1QLT A;  3HSU A;  1MBT A;  2W3R A;  3S1F A;  1V97 A;  1UXY A;  1N61 C;  3TSJ A;  1W1Q A;  2UUV A;  3W8Z A;  3C0P A;  3POP A;  1FIQ B;  2GQT A;  3JS8 A;  2P4P A;  3S1C A;  5I1W A;  1W1O A;  4PVJ A;  5AE3 A;  2VFR A;  1N60 C;  3FW9 A;  4O95 A;  2Y4G A;  5L6G A;  3PM9 A;  5K8E A;  5FXE A;  4OAL A;  3NVY B;  1I19 A;  5G5G B;  1SB3 B;  1E8H A;  1QLU A;  5AE1 A;  3W8W A;  2RK5 A;  3LAE A;  1N62 C;  2QPM A;  2BVG A;  3KJM A;  2R2Z A;  5L6F A;  3PQB A;  4ZOH B;  3BW7 A;  2Y08 A;  4PVH A;  2VFS A;  1F0X A;  3D2D A;  1W1R A;  2P13 A;  3B9J B;  1AHU A;  5ADZ A;  1JRO A;  4XLO A;  2VFV A;  2Y3R A;  4HG0 A;  4BC7 A;  3W8X A;  2Y3S A;  2NQW A;  3I99 A;  1E8F A;  1E0Y A;  2Q4W A;  1DII A;  2EXR A;  2I0K A;  1HSK A;  4EC3 A;  3AM9 A;  2AXR A;  4MLA A;  1N63 C;  1WYG A;  3ETR B;  1WVF A;  1W1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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