2BVFA

Crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 3 (p1)
Total Genus 145
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
453
structure length
453
Chain Sequence
KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidase
molecule keywords 6-HYDROXY-D-NICOTINE OXIDASE
publication title Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans.
pubmed doi rcsb
source organism Arthrobacter nicotinovorans
total genus 145
structure length 453
sequence length 453
chains with identical sequence B
ec nomenclature ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2bvfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2bvfA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2bvfA03
3ETRB 2PLIA 1AHUA 3NVYB 2W3RA 3NVVB 1HSKA 3NVWB 4PVEA 2W54A 1ZXIC 5HQXA 1AHVA 3S1FA 3TSHA 2NQWA 4O95A 2OAIA 5G5GB 3W8XA 2GQTA 4PWBA 1F0XA 2BVGA 3EUB3 3PM9A 3TSJA 4BC9A 2R8DA 2VFTA 1DIIA 4PVKA 3BW7A 3DEDA 2VFUA 3NRZB 3RJ8A 1E8GA 1SB3B 4PWCA 1VDVA 2Y3RA 3D2DA 2P13A 3LLBA 5FXPA 1W1SA 3AN1A 3C0PA 3PQBA 3AM9A 1N60C 1I19A 1V97A 1ZR6A 5D79A 1MBTA 1JRPA 1N61C 1VAOA 2Y4GA 1N5XA 3TX1A 3NVZB 2VAOA 5HMRA 3KJMA 1N62C 1QLUA 5AE1A 2Q85A 2O3GA 3D2HA 4PYTA 2IPIA 2BVHA 4BBYA 5K8EA 2VFVA 2I0KA 3FW9A 5I1VA 2QKNA 5I1WA 3DQ0A 3SR6B 2W55A 4JB1A 2E3TA 4DNSA 2RK5A 5L6FA 2Q4WA 3AMZA 5AWVA 2R2ZA 4BC7A 5G5HB 1UXYA 1WVEA 2WDWA 1FFVC 1T3QC 3FWAA 4BCAA 2BVFA 1JROA 3JS8A 4OALA 3FW7A 1W1JA 3S1DA 1W1QA 3GSYA 4ML8A 2MBRA 3W8ZA 5FXFA 1W1OA 1DZNA 3FW8A 5L6GA 4MLAA 1FFUC 2P3HA 3D2JA 1FO4A 2W3SA 1RM6B 4JAYA 2P4PA 3NS1B 2AXRA 2VFRA 3B9JB 4PVHA 4HG0A 3POPA 1WVFA 1DIQA 2VFSA 1E0YA 2QPMA 1MBBA 4EC3A 1W1LA 2PLSA 1E8HA 3S1EA 1AHZA 2EXRA 2Y08A 3HSUA 5AE2A 2GQUA 3LAEA 3I99A 3VTEA 3RJAA 4PVJA 5FXEA 1N63C 1W1RA 1W1KA 5AE3A 3S1CA 4PZFA 4UD8A 1FIQB 1QLTA 5FXDA 5HHZA 1E8FA 4XLOA 3HRDC 1N5WC 2Y3SA 1W1MA 2YVSA 3W8WA 4ZOHB 1WYGA 5ADZA
chains in the Genus database with same CATH superfamily
3ETRB 2PLIA 1AHUA 3NVYB 2W3RA 3NVVB 1HSKA 3NVWB 4PVEA 2W54A 1ZXIC 5HQXA 1AHVA 2UUVA 3S1FA 3TSHA 2NQWA 4O95A 2OAIA 5G5GB 3W8XA 2GQTA 4PWBA 1F0XA 2BVGA 3EUB3 3PM9A 3TSJA 4BC9A 2R8DA 2VFTA 1DIIA 4PVKA 3BW7A 3DEDA 2VFUA 3NRZB 3RJ8A 1E8GA 1SB3B 4PWCA 1VDVA 2Y3RA 3D2DA 2P13A 3LLBA 5FXPA 1W1SA 3AN1A 3C0PA 3PQBA 3AM9A 1N60C 1I19A 1V97A 1ZR6A 5D79A 1MBTA 1JRPA 1N61C 1VAOA 2Y4GA 1N5XA 3EJDB 3TX1A 3NVZB 2VAOA 5HMRA 3KJMA 1N62C 1QLUA 5AE1A 2Q85A 2O3GA 3D2HA 4PYTA 2IPIA 2BVHA 4BBYA 5K8EA 2VFVA 2I0KA 3FW9A 5I1VA 2QKNA 5I1WA 3DQ0A 3SR6B 2W55A 4JB1A 2E3TA 4DNSA 2RK5A 5L6FA 2Q4WA 3AMZA 5AWVA 2R2ZA 4BC7A 2WDWA 1UXYA 1WVEA 5G5HB 1FFVC 1T3QC 3FWAA 4BCAA 2BVFA 1JROA 3JS8A 4OALA 3FW7A 1W1JA 3S1DA 1W1QA 3EJEB 3GSYA 4ML8A 2MBRA 3W8ZA 5FXFA 1W1OA 1DZNA 3FW8A 5L6GA 4MLAA 1FFUC 2P3HA 3D2JA 1FO4A 2W3SA 1RM6B 4JAYA 2P4PA 3NS1B 2UUUA 2AXRA 2VFRA 3B9JB 4PVHA 3POPA 4HG0A 1WVFA 1DIQA 2VFSA 1E0YA 2QPMA 1MBBA 4EC3A 1W1LA 2PLSA 1E8HA 3S1EA 1AHZA 2EXRA 2Y08A 3HSUA 5AE2A 2GQUA 3LAEA 3I99A 3VTEA 3RJAA 4PVJA 5FXEA 1N63C 1W1RA 1W1KA 4ZOHB 5AE3A 3S1CA 4PZFA 4UD8A 1FIQB 1QLTA 5FXDA 5HHZA 1E8FA 4XLOA 3HRDC 1N5WC 2Y3SA 1W1MA 2YVSA 3W8WA 3EJBB 1WYGA 5ADZA
chains in the Genus database with same CATH topology
3ETRB 2PLIA 1AHUA 3NVYB 2W3RA 3NVVB 1HSKA 3NVWB 4PVEA 2W54A 1ZXIC 5HQXA 1AHVA 2UUVA 3S1FA 3TSHA 2NQWA 4O95A 2OAIA 5G5GB 3W8XA 2GQTA 4PWBA 1F0XA 2BVGA 3EUB3 3PM9A 3TSJA 4BC9A 2R8DA 2VFTA 1DIIA 4PVKA 3BW7A 3DEDA 2VFUA 3NRZB 3RJ8A 1E8GA 1SB3B 4PWCA 1VDVA 2Y3RA 3D2DA 2P13A 3LLBA 5FXPA 1W1SA 3AN1A 3C0PA 3PQBA 3AM9A 1N60C 1I19A 1V97A 1ZR6A 5D79A 1MBTA 1JRPA 1N61C 1VAOA 2Y4GA 1N5XA 3TX1A 3NVZB 2VAOA 5HMRA 3KJMA 1N62C 1QLUA 5AE1A 2Q85A 2O3GA 3D2HA 4PYTA 2IPIA 2BVHA 4BBYA 5K8EA 2VFVA 2I0KA 3FW9A 5I1VA 2QKNA 5I1WA 3DQ0A 3SR6B 2W55A 4JB1A 2E3TA 4DNSA 2RK5A 5L6FA 2Q4WA 3AMZA 5AWVA 2R2ZA 4BC7A 2WDWA 1UXYA 1WVEA 5G5HB 1FFVC 1T3QC 3FWAA 4BCAA 2BVFA 1JROA 3JS8A 4OALA 3FW7A 1W1JA 3S1DA 1W1QA 3GSYA 4ML8A 2MBRA 3W8ZA 5FXFA 1W1OA 1DZNA 3FW8A 5L6GA 4MLAA 1FFUC 2P3HA 3D2JA 1FO4A 2W3SA 1RM6B 4JAYA 2P4PA 3NS1B 2UUUA 2AXRA 2VFRA 3B9JB 4PVHA 3POPA 4HG0A 1WVFA 1DIQA 2VFSA 1E0YA 2QPMA 1MBBA 4EC3A 1W1LA 2PLSA 1E8HA 3S1EA 1AHZA 2EXRA 2Y08A 3HSUA 5AE2A 2GQUA 3LAEA 3I99A 3VTEA 3RJAA 4PVJA 5FXEA 1N63C 1W1RA 1W1KA 5AE3A 3S1CA 4PZFA 4UD8A 1FIQB 1QLTA 5FXDA 5HHZA 1E8FA 4XLOA 3HRDC 1N5WC 2Y3SA 1W1MA 2YVSA 3W8WA 4ZOHB 1WYGA 5ADZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ETR B;  2PLI A;  1AHU A;  3NVY B;  2W3R A;  3NVV B;  1HSK A;  3NVW B;  4PVE A;  2W54 A;  1ZXI C;  5HQX A;  1AHV A;  3S1F A;  3TSH A;  2NQW A;  4O95 A;  2OAI A;  5G5G B;  3W8X A;  2GQT A;  4PWB A;  1F0X A;  2BVG A;  3EUB 3;  3PM9 A;  3TSJ A;  4BC9 A;  2R8D A;  2VFT A;  1DII A;  4PVK A;  3BW7 A;  3DED A;  2VFU A;  3NRZ B;  3RJ8 A;  1E8G A;  1SB3 B;  4PWC A;  1VDV A;  2Y3R A;  3D2D A;  2P13 A;  3LLB A;  5FXP A;  1W1S A;  3AN1 A;  3C0P A;  3PQB A;  3AM9 A;  1N60 C;  1I19 A;  1V97 A;  1ZR6 A;  5D79 A;  1MBT A;  1JRP A;  1N61 C;  1VAO A;  2Y4G A;  1N5X A;  3TX1 A;  3NVZ B;  2VAO A;  5HMR A;  3KJM A;  1N62 C;  1QLU A;  5AE1 A;  2Q85 A;  2O3G A;  3D2H A;  4PYT A;  2IPI A;  2BVH A;  4BBY A;  5K8E A;  2VFV A;  2I0K A;  3FW9 A;  5I1V A;  2QKN A;  5I1W A;  3DQ0 A;  3SR6 B;  2W55 A;  4JB1 A;  2E3T A;  4DNS A;  2RK5 A;  5L6F A;  2Q4W A;  3AMZ A;  5AWV A;  2R2Z A;  4BC7 A;  5G5H B;  1UXY A;  1WVE A;  2WDW A;  1FFV C;  1T3Q C;  3FWA A;  4BCA A;  2BVF A;  1JRO A;  3JS8 A;  4OAL A;  3FW7 A;  1W1J A;  3S1D A;  1W1Q A;  3GSY A;  4ML8 A;  2MBR A;  3W8Z A;  5FXF A;  1W1O A;  1DZN A;  3FW8 A;  5L6G A;  4MLA A;  1FFU C;  2P3H A;  3D2J A;  1FO4 A;  2W3S A;  1RM6 B;  4JAY A;  2P4P A;  3NS1 B;  2AXR A;  2VFR A;  3B9J B;  4PVH A;  4HG0 A;  3POP A;  1WVF A;  1DIQ A;  2VFS A;  1E0Y A;  2QPM A;  1MBB A;  4EC3 A;  1W1L A;  2PLS A;  1E8H A;  3S1E A;  1AHZ A;  2EXR A;  2Y08 A;  3HSU A;  5AE2 A;  2GQU A;  3LAE A;  3I99 A;  3VTE A;  3RJA A;  4PVJ A;  5FXE A;  1N63 C;  1W1R A;  1W1K A;  5AE3 A;  3S1C A;  4PZF A;  4UD8 A;  1FIQ B;  1QLT A;  5FXD A;  5HHZ A;  1E8F A;  4XLO A;  3HRD C;  1N5W C;  2Y3S A;  1W1M A;  2YVS A;  3W8W A;  4ZOH B;  1WYG A;  5ADZ A; 
#chains in the Genus database with same CATH topology
 3ETR B;  2PLI A;  1AHU A;  3NVY B;  2W3R A;  3NVV B;  1HSK A;  3NVW B;  4PVE A;  2W54 A;  1ZXI C;  5HQX A;  1AHV A;  2UUV A;  3S1F A;  3TSH A;  2NQW A;  4O95 A;  2OAI A;  5G5G B;  3W8X A;  2GQT A;  4PWB A;  1F0X A;  2BVG A;  3EUB 3;  3PM9 A;  3TSJ A;  4BC9 A;  2R8D A;  2VFT A;  1DII A;  4PVK A;  3BW7 A;  3DED A;  2VFU A;  3NRZ B;  3RJ8 A;  1E8G A;  1SB3 B;  4PWC A;  1VDV A;  2Y3R A;  3D2D A;  2P13 A;  3LLB A;  5FXP A;  1W1S A;  3AN1 A;  3C0P A;  3PQB A;  3AM9 A;  1N60 C;  1I19 A;  1V97 A;  1ZR6 A;  5D79 A;  1MBT A;  1JRP A;  1N61 C;  1VAO A;  2Y4G A;  1N5X A;  3EJD B;  3TX1 A;  3NVZ B;  2VAO A;  5HMR A;  3KJM A;  1N62 C;  1QLU A;  5AE1 A;  2Q85 A;  2O3G A;  3D2H A;  4PYT A;  2IPI A;  2BVH A;  4BBY A;  5K8E A;  2VFV A;  2I0K A;  3FW9 A;  5I1V A;  2QKN A;  5I1W A;  3DQ0 A;  3SR6 B;  2W55 A;  4JB1 A;  2E3T A;  4DNS A;  2RK5 A;  5L6F A;  2Q4W A;  3AMZ A;  5AWV A;  2R2Z A;  4BC7 A;  2WDW A;  1UXY A;  1WVE A;  5G5H B;  1FFV C;  1T3Q C;  3FWA A;  4BCA A;  2BVF A;  1JRO A;  3JS8 A;  4OAL A;  3FW7 A;  1W1J A;  3S1D A;  1W1Q A;  3EJE B;  3GSY A;  4ML8 A;  2MBR A;  3W8Z A;  5FXF A;  1W1O A;  1DZN A;  3FW8 A;  5L6G A;  4MLA A;  1FFU C;  2P3H A;  3D2J A;  1FO4 A;  2W3S A;  1RM6 B;  4JAY A;  2P4P A;  3NS1 B;  2UUU A;  2AXR A;  2VFR A;  3B9J B;  4PVH A;  3POP A;  4HG0 A;  1WVF A;  1DIQ A;  2VFS A;  1E0Y A;  2QPM A;  1MBB A;  4EC3 A;  1W1L A;  2PLS A;  1E8H A;  3S1E A;  1AHZ A;  2EXR A;  2Y08 A;  3HSU A;  5AE2 A;  2GQU A;  3LAE A;  3I99 A;  3VTE A;  3RJA A;  4PVJ A;  5FXE A;  1N63 C;  1W1R A;  1W1K A;  4ZOH B;  5AE3 A;  3S1C A;  4PZF A;  4UD8 A;  1FIQ B;  1QLT A;  5FXD A;  5HHZ A;  1E8F A;  4XLO A;  3HRD C;  1N5W C;  2Y3S A;  1W1M A;  2YVS A;  3W8W A;  3EJB B;  1WYG A;  5ADZ A; 
#chains in the Genus database with same CATH homology
 3ETR B;  2PLI A;  1AHU A;  3NVY B;  2W3R A;  3NVV B;  1HSK A;  3NVW B;  4PVE A;  2W54 A;  1ZXI C;  5HQX A;  1AHV A;  2UUV A;  3S1F A;  3TSH A;  2NQW A;  4O95 A;  2OAI A;  5G5G B;  3W8X A;  2GQT A;  4PWB A;  1F0X A;  2BVG A;  3EUB 3;  3PM9 A;  3TSJ A;  4BC9 A;  2R8D A;  2VFT A;  1DII A;  4PVK A;  3BW7 A;  3DED A;  2VFU A;  3NRZ B;  3RJ8 A;  1E8G A;  1SB3 B;  4PWC A;  1VDV A;  2Y3R A;  3D2D A;  2P13 A;  3LLB A;  5FXP A;  1W1S A;  3AN1 A;  3C0P A;  3PQB A;  3AM9 A;  1N60 C;  1I19 A;  1V97 A;  1ZR6 A;  5D79 A;  1MBT A;  1JRP A;  1N61 C;  1VAO A;  2Y4G A;  1N5X A;  3TX1 A;  3NVZ B;  2VAO A;  5HMR A;  3KJM A;  1N62 C;  1QLU A;  5AE1 A;  2Q85 A;  2O3G A;  3D2H A;  4PYT A;  2IPI A;  2BVH A;  4BBY A;  5K8E A;  2VFV A;  2I0K A;  3FW9 A;  5I1V A;  2QKN A;  5I1W A;  3DQ0 A;  3SR6 B;  2W55 A;  4JB1 A;  2E3T A;  4DNS A;  2RK5 A;  5L6F A;  2Q4W A;  3AMZ A;  5AWV A;  2R2Z A;  4BC7 A;  2WDW A;  1UXY A;  1WVE A;  5G5H B;  1FFV C;  1T3Q C;  3FWA A;  4BCA A;  2BVF A;  1JRO A;  3JS8 A;  4OAL A;  3FW7 A;  1W1J A;  3S1D A;  1W1Q A;  3GSY A;  4ML8 A;  2MBR A;  3W8Z A;  5FXF A;  1W1O A;  1DZN A;  3FW8 A;  5L6G A;  4MLA A;  1FFU C;  2P3H A;  3D2J A;  1FO4 A;  2W3S A;  1RM6 B;  4JAY A;  2P4P A;  3NS1 B;  2UUU A;  2AXR A;  2VFR A;  3B9J B;  4PVH A;  3POP A;  4HG0 A;  1WVF A;  1DIQ A;  2VFS A;  1E0Y A;  2QPM A;  1MBB A;  4EC3 A;  1W1L A;  2PLS A;  1E8H A;  3S1E A;  1AHZ A;  2EXR A;  2Y08 A;  3HSU A;  5AE2 A;  2GQU A;  3LAE A;  3I99 A;  3VTE A;  3RJA A;  4PVJ A;  5FXE A;  1N63 C;  1W1R A;  1W1K A;  5AE3 A;  3S1C A;  4PZF A;  4UD8 A;  1FIQ B;  1QLT A;  5FXD A;  5HHZ A;  1E8F A;  4XLO A;  3HRD C;  1N5W C;  2Y3S A;  1W1M A;  2YVS A;  3W8W A;  4ZOH B;  1WYG A;  5ADZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...