2BVFA

Crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 3 (p1)
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
453
structure length
453
Chain Sequence
KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 6-HYDROXY-D-NICOTINE OXIDASE
publication title Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans.
pubmed doi rcsb
source organism Arthrobacter nicotinovorans
molecule tags Oxidase
total genus 145
structure length 453
sequence length 453
chains with identical sequence B
ec nomenclature ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2bvfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2bvfA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2bvfA03
3FWAA 1RM6B 5AE1A 3W8XA 1E8FA 2P3HA 5AWVA 2GQTA 3LLBA 4XLOA 2VAOA 4BC7A 2NQWA 3TX1A 2Y3SA 4JB1A 4PWBA 1W1MA 3TSJA 1F0XA 1AHVA 3RJAA 3W8WA 1W1SA 3LAEA 5G5HB 5L6GA 1UXYA 3FW9A 2YVSA 3NVWB 2AXRA 1JRPA 5I1WA 3S1EA 3ETRB 3SR6B 2Q85A 4PWCA 1FO4A 2VFUA 1N60C 5FXDA 1HSKA 2MBRA 2VFTA 3D2DA 4BBYA 3JS8A 4BC9A 1E0YA 2EXRA 5AE3A 2PLSA 4PZFA 2P4PA 3S1DA 5HHZA 5ADZA 2R8DA 5L6FA 4UD8A 4PVKA 4HG0A 3DEDA 2VFRA 1ZXIC 1DZNA 3HSUA 5HMRA 1QLTA 1W1KA 4ZOHB 4EC3A 2QPMA 2IPIA 5AE2A 5D79A 4DNSA 1T3QC 2GQUA 1N62C 1N5WC 1W1RA 2Y08A 3GSYA 1QLUA 3FW7A 4ML8A 3NVVB 1N61C 3PM9A 2BVGA 1N63C 1JROA 3PQBA 1VDVA 2W3RA 1VAOA 1MBTA 5I1VA 3AM9A 3KJMA 3NVZB 2BVHA 3NRZB 3AMZA 3BW7A 1MBBA 3D2HA 3W8ZA 2E3TA 5HQXA 2VFSA 2PLIA 3RJ8A 1DIQA 1E8HA 1N5XA 2BVFA 1AHUA 1E8GA 1I19A 2I0KA 1ZR6A 5FXEA 1W1JA 2W3SA 3C0PA 5FXPA 3S1FA 1WVFA 3I99A 2W54A 2WDWA 2W55A 1WVEA 1FFUC 4MLAA 1AHZA 4PYTA 3NS1B 2Y4GA 5K8EA 2Y3RA 2O3GA 4PVHA 2Q4WA 3S1CA 1FIQB 2VFVA 3TSHA 1SB3B 4JAYA 1WYGA 3AN1A 3FW8A 3DQ0A 3EUB3 2R2ZA 5G5GB 1DIIA 4PVEA 4O95A 3POPA 4OALA 1W1OA 2OAIA 1W1QA 2P13A 1FFVC 5FXFA 3NVYB 3VTEA 3HRDC 2QKNA 4BCAA 1W1LA 2RK5A 3D2JA 1V97A 3B9JB 4PVJA
chains in the Genus database with same CATH superfamily
3FWAA 1RM6B 5AE1A 3W8XA 1E8FA 2P3HA 5AWVA 2GQTA 3LLBA 4XLOA 2VAOA 4BC7A 2NQWA 3TX1A 2Y3SA 2UUUA 4JB1A 4PWBA 1W1MA 3TSJA 1F0XA 1AHVA 3RJAA 3W8WA 1W1SA 3LAEA 5G5HB 5L6GA 1UXYA 3FW9A 3NVWB 2YVSA 2AXRA 1JRPA 5I1WA 3S1EA 3ETRB 3SR6B 2Q85A 4PWCA 1FO4A 2VFUA 1N60C 5FXDA 1HSKA 2MBRA 2VFTA 3D2DA 3EJBB 3JS8A 4BC9A 1E0YA 2EXRA 4BBYA 5AE3A 2PLSA 4PZFA 2P4PA 3S1DA 5HHZA 5ADZA 2R8DA 5L6FA 4UD8A 4PVKA 4HG0A 3DEDA 2VFRA 1ZXIC 1DZNA 3HSUA 5HMRA 1QLTA 1W1KA 4ZOHB 4EC3A 2QPMA 2IPIA 5AE2A 5D79A 4DNSA 1T3QC 2GQUA 1N62C 1N5WC 1W1RA 2Y08A 3GSYA 1QLUA 3FW7A 3NVVB 4ML8A 1N61C 3PM9A 2BVGA 1N63C 1JROA 3PQBA 1VDVA 2W3RA 1VAOA 1MBTA 5I1VA 3AM9A 3KJMA 3NVZB 2BVHA 3EJEB 3NRZB 3AMZA 3BW7A 1MBBA 3D2HA 3W8ZA 2E3TA 5HQXA 2VFSA 2PLIA 3RJ8A 1DIQA 1E8HA 1N5XA 2BVFA 1AHUA 1E8GA 1I19A 2I0KA 1ZR6A 5FXEA 1W1JA 2W3SA 3C0PA 5FXPA 3S1FA 1WVFA 3I99A 2W54A 2WDWA 2W55A 1WVEA 1FFUC 3EJDB 1AHZA 4MLAA 4PYTA 3NS1B 2Y4GA 5K8EA 2Y3RA 2O3GA 4PVHA 2Q4WA 3S1CA 1FIQB 2VFVA 3TSHA 1SB3B 4JAYA 1WYGA 3AN1A 3FW8A 3DQ0A 3EUB3 2R2ZA 5G5GB 1DIIA 4PVEA 4O95A 3POPA 4OALA 1W1OA 2OAIA 1W1QA 2P13A 1FFVC 5FXFA 3NVYB 3VTEA 3HRDC 2QKNA 4BCAA 1W1LA 2RK5A 3D2JA 1V97A 3B9JB 4PVJA 2UUVA
chains in the Genus database with same CATH topology
3FWAA 1RM6B 5AE1A 3W8XA 1E8FA 2P3HA 5AWVA 2GQTA 3LLBA 4XLOA 2VAOA 4BC7A 2NQWA 3TX1A 2Y3SA 2UUUA 4JB1A 4PWBA 1W1MA 3TSJA 1F0XA 1AHVA 3RJAA 3W8WA 1W1SA 3LAEA 5G5HB 5L6GA 1UXYA 3FW9A 2YVSA 3NVWB 2AXRA 1JRPA 5I1WA 3S1EA 3ETRB 3SR6B 2Q85A 4PWCA 1FO4A 2VFUA 1N60C 5FXDA 1HSKA 2MBRA 2VFTA 3D2DA 4BBYA 3JS8A 4BC9A 1E0YA 2EXRA 5AE3A 2PLSA 4PZFA 2P4PA 3S1DA 5HHZA 5ADZA 2R8DA 5L6FA 4UD8A 4PVKA 4HG0A 3DEDA 2VFRA 1ZXIC 1DZNA 3HSUA 5HMRA 1QLTA 1W1KA 4ZOHB 4EC3A 2QPMA 2IPIA 5AE2A 5D79A 4DNSA 1T3QC 2GQUA 1N62C 1N5WC 1W1RA 2Y08A 3GSYA 1QLUA 3FW7A 4ML8A 3NVVB 1N61C 3PM9A 2BVGA 1N63C 1JROA 3PQBA 1VDVA 2W3RA 1VAOA 1MBTA 5I1VA 3AM9A 3KJMA 3NVZB 2BVHA 3NRZB 3AMZA 3BW7A 1MBBA 3D2HA 3W8ZA 2E3TA 5HQXA 2VFSA 2PLIA 3RJ8A 1DIQA 1E8HA 1N5XA 2BVFA 1AHUA 1E8GA 1I19A 2I0KA 1ZR6A 5FXEA 1W1JA 2W3SA 3C0PA 5FXPA 3S1FA 1WVFA 3I99A 2W54A 2WDWA 2W55A 1WVEA 1FFUC 4MLAA 1AHZA 4PYTA 3NS1B 2Y4GA 5K8EA 2Y3RA 2O3GA 4PVHA 2Q4WA 3S1CA 1FIQB 2VFVA 3TSHA 1SB3B 4JAYA 1WYGA 3AN1A 3FW8A 3DQ0A 3EUB3 2R2ZA 5G5GB 1DIIA 4PVEA 4O95A 3POPA 4OALA 1W1OA 2OAIA 1W1QA 2P13A 1FFVC 5FXFA 3NVYB 3VTEA 3HRDC 2QKNA 4BCAA 1W1LA 2RK5A 3D2JA 1V97A 3B9JB 4PVJA 2UUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FWA A;  1RM6 B;  5AE1 A;  3W8X A;  1E8F A;  2P3H A;  5AWV A;  2GQT A;  3LLB A;  4XLO A;  2VAO A;  4BC7 A;  2NQW A;  3TX1 A;  2Y3S A;  4JB1 A;  4PWB A;  1W1M A;  3TSJ A;  1F0X A;  1AHV A;  3RJA A;  3W8W A;  1W1S A;  3LAE A;  5G5H B;  5L6G A;  1UXY A;  3FW9 A;  2YVS A;  3NVW B;  2AXR A;  1JRP A;  5I1W A;  3S1E A;  3ETR B;  3SR6 B;  2Q85 A;  4PWC A;  1FO4 A;  2VFU A;  1N60 C;  5FXD A;  1HSK A;  2MBR A;  2VFT A;  3D2D A;  4BBY A;  3JS8 A;  4BC9 A;  1E0Y A;  2EXR A;  5AE3 A;  2PLS A;  4PZF A;  2P4P A;  3S1D A;  5HHZ A;  5ADZ A;  2R8D A;  5L6F A;  4UD8 A;  4PVK A;  4HG0 A;  3DED A;  2VFR A;  1ZXI C;  1DZN A;  3HSU A;  5HMR A;  1QLT A;  1W1K A;  4ZOH B;  4EC3 A;  2QPM A;  2IPI A;  5AE2 A;  5D79 A;  4DNS A;  1T3Q C;  2GQU A;  1N62 C;  1N5W C;  1W1R A;  2Y08 A;  3GSY A;  1QLU A;  3FW7 A;  4ML8 A;  3NVV B;  1N61 C;  3PM9 A;  2BVG A;  1N63 C;  1JRO A;  3PQB A;  1VDV A;  2W3R A;  1VAO A;  1MBT A;  5I1V A;  3AM9 A;  3KJM A;  3NVZ B;  2BVH A;  3NRZ B;  3AMZ A;  3BW7 A;  1MBB A;  3D2H A;  3W8Z A;  2E3T A;  5HQX A;  2VFS A;  2PLI A;  3RJ8 A;  1DIQ A;  1E8H A;  1N5X A;  2BVF A;  1AHU A;  1E8G A;  1I19 A;  2I0K A;  1ZR6 A;  5FXE A;  1W1J A;  2W3S A;  3C0P A;  5FXP A;  3S1F A;  1WVF A;  3I99 A;  2W54 A;  2WDW A;  2W55 A;  1WVE A;  1FFU C;  4MLA A;  1AHZ A;  4PYT A;  3NS1 B;  2Y4G A;  5K8E A;  2Y3R A;  2O3G A;  4PVH A;  2Q4W A;  3S1C A;  1FIQ B;  2VFV A;  3TSH A;  1SB3 B;  4JAY A;  1WYG A;  3AN1 A;  3FW8 A;  3DQ0 A;  3EUB 3;  2R2Z A;  5G5G B;  1DII A;  4PVE A;  4O95 A;  3POP A;  4OAL A;  1W1O A;  2OAI A;  1W1Q A;  2P13 A;  1FFV C;  5FXF A;  3NVY B;  3VTE A;  3HRD C;  2QKN A;  4BCA A;  1W1L A;  2RK5 A;  3D2J A;  1V97 A;  3B9J B;  4PVJ A; 
#chains in the Genus database with same CATH topology
 3FWA A;  1RM6 B;  5AE1 A;  3W8X A;  1E8F A;  2P3H A;  5AWV A;  2GQT A;  3LLB A;  4XLO A;  2VAO A;  4BC7 A;  2NQW A;  3TX1 A;  2Y3S A;  2UUU A;  4JB1 A;  4PWB A;  1W1M A;  3TSJ A;  1F0X A;  1AHV A;  3RJA A;  3W8W A;  1W1S A;  3LAE A;  5G5H B;  5L6G A;  1UXY A;  3FW9 A;  3NVW B;  2YVS A;  2AXR A;  1JRP A;  5I1W A;  3S1E A;  3ETR B;  3SR6 B;  2Q85 A;  4PWC A;  1FO4 A;  2VFU A;  1N60 C;  5FXD A;  1HSK A;  2MBR A;  2VFT A;  3D2D A;  3EJB B;  3JS8 A;  4BC9 A;  1E0Y A;  2EXR A;  4BBY A;  5AE3 A;  2PLS A;  4PZF A;  2P4P A;  3S1D A;  5HHZ A;  5ADZ A;  2R8D A;  5L6F A;  4UD8 A;  4PVK A;  4HG0 A;  3DED A;  2VFR A;  1ZXI C;  1DZN A;  3HSU A;  5HMR A;  1QLT A;  1W1K A;  4ZOH B;  4EC3 A;  2QPM A;  2IPI A;  5AE2 A;  5D79 A;  4DNS A;  1T3Q C;  2GQU A;  1N62 C;  1N5W C;  1W1R A;  2Y08 A;  3GSY A;  1QLU A;  3FW7 A;  3NVV B;  4ML8 A;  1N61 C;  3PM9 A;  2BVG A;  1N63 C;  1JRO A;  3PQB A;  1VDV A;  2W3R A;  1VAO A;  1MBT A;  5I1V A;  3AM9 A;  3KJM A;  3NVZ B;  2BVH A;  3EJE B;  3NRZ B;  3AMZ A;  3BW7 A;  1MBB A;  3D2H A;  3W8Z A;  2E3T A;  5HQX A;  2VFS A;  2PLI A;  3RJ8 A;  1DIQ A;  1E8H A;  1N5X A;  2BVF A;  1AHU A;  1E8G A;  1I19 A;  2I0K A;  1ZR6 A;  5FXE A;  1W1J A;  2W3S A;  3C0P A;  5FXP A;  3S1F A;  1WVF A;  3I99 A;  2W54 A;  2WDW A;  2W55 A;  1WVE A;  1FFU C;  3EJD B;  1AHZ A;  4MLA A;  4PYT A;  3NS1 B;  2Y4G A;  5K8E A;  2Y3R A;  2O3G A;  4PVH A;  2Q4W A;  3S1C A;  1FIQ B;  2VFV A;  3TSH A;  1SB3 B;  4JAY A;  1WYG A;  3AN1 A;  3FW8 A;  3DQ0 A;  3EUB 3;  2R2Z A;  5G5G B;  1DII A;  4PVE A;  4O95 A;  3POP A;  4OAL A;  1W1O A;  2OAI A;  1W1Q A;  2P13 A;  1FFV C;  5FXF A;  3NVY B;  3VTE A;  3HRD C;  2QKN A;  4BCA A;  1W1L A;  2RK5 A;  3D2J A;  1V97 A;  3B9J B;  4PVJ A;  2UUV A; 
#chains in the Genus database with same CATH homology
 3FWA A;  1RM6 B;  5AE1 A;  3W8X A;  1E8F A;  2P3H A;  5AWV A;  2GQT A;  3LLB A;  4XLO A;  2VAO A;  4BC7 A;  2NQW A;  3TX1 A;  2Y3S A;  2UUU A;  4JB1 A;  4PWB A;  1W1M A;  3TSJ A;  1F0X A;  1AHV A;  3RJA A;  3W8W A;  1W1S A;  3LAE A;  5G5H B;  5L6G A;  1UXY A;  3FW9 A;  2YVS A;  3NVW B;  2AXR A;  1JRP A;  5I1W A;  3S1E A;  3ETR B;  3SR6 B;  2Q85 A;  4PWC A;  1FO4 A;  2VFU A;  1N60 C;  5FXD A;  1HSK A;  2MBR A;  2VFT A;  3D2D A;  4BBY A;  3JS8 A;  4BC9 A;  1E0Y A;  2EXR A;  5AE3 A;  2PLS A;  4PZF A;  2P4P A;  3S1D A;  5HHZ A;  5ADZ A;  2R8D A;  5L6F A;  4UD8 A;  4PVK A;  4HG0 A;  3DED A;  2VFR A;  1ZXI C;  1DZN A;  3HSU A;  5HMR A;  1QLT A;  1W1K A;  4ZOH B;  4EC3 A;  2QPM A;  2IPI A;  5AE2 A;  5D79 A;  4DNS A;  1T3Q C;  2GQU A;  1N62 C;  1N5W C;  1W1R A;  2Y08 A;  3GSY A;  1QLU A;  3FW7 A;  4ML8 A;  3NVV B;  1N61 C;  3PM9 A;  2BVG A;  1N63 C;  1JRO A;  3PQB A;  1VDV A;  2W3R A;  1VAO A;  1MBT A;  5I1V A;  3AM9 A;  3KJM A;  3NVZ B;  2BVH A;  3NRZ B;  3AMZ A;  3BW7 A;  1MBB A;  3D2H A;  3W8Z A;  2E3T A;  5HQX A;  2VFS A;  2PLI A;  3RJ8 A;  1DIQ A;  1E8H A;  1N5X A;  2BVF A;  1AHU A;  1E8G A;  1I19 A;  2I0K A;  1ZR6 A;  5FXE A;  1W1J A;  2W3S A;  3C0P A;  5FXP A;  3S1F A;  1WVF A;  3I99 A;  2W54 A;  2WDW A;  2W55 A;  1WVE A;  1FFU C;  4MLA A;  1AHZ A;  4PYT A;  3NS1 B;  2Y4G A;  5K8E A;  2Y3R A;  2O3G A;  4PVH A;  2Q4W A;  3S1C A;  1FIQ B;  2VFV A;  3TSH A;  1SB3 B;  4JAY A;  1WYG A;  3AN1 A;  3FW8 A;  3DQ0 A;  3EUB 3;  2R2Z A;  5G5G B;  1DII A;  4PVE A;  4O95 A;  3POP A;  4OAL A;  1W1O A;  2OAI A;  1W1Q A;  2P13 A;  1FFV C;  5FXF A;  3NVY B;  3VTE A;  3HRD C;  2QKN A;  4BCA A;  1W1L A;  2RK5 A;  3D2J A;  1V97 A;  3B9J B;  4PVJ A;  2UUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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