2BVFA

Crystal structure of 6-hydoxy-d-nicotine oxidase from arthrobacter nicotinovorans. crystal form 3 (p1)
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
453
structure length
453
Chain Sequence
b'KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 6-HYDROXY-D-NICOTINE OXIDASE
publication title Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans.
pubmed doi rcsb
source organism Arthrobacter nicotinovorans
molecule tags Oxidase
total genus 145
structure length 453
sequence length 453
chains with identical sequence B
ec nomenclature ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2bvfA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2bvfA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2bvfA03
2E3TA 2YVSA 5ADZA 3DEDA 3AM9A 1ZXIC 3HRDC 2Y3SA 2I0KA 1V97A 1N5WC 1W1OA 3NRZB 1AHUA 3DQ0A 3LLBA 2BVGA 4PWCA 1VDVA 1QLTA 1N62C 3HSUA 5I1WA 1AHZA 3D2HA 4EC3A 1FFVC 3NVVB 2VFRA 3FWAA 3TSHA 2VFVA 5FXDA 2AXRA 4PZFA 1FIQB 3S1CA 1W1LA 3FW8A 2P3HA 2VAOA 2R8DA 1MBTA 2W54A 2Y08A 3FW9A 1FFUC 2QKNA 1SB3B 3PQBA 1E8HA 3D2DA 4JB1A 1VAOA 1E8GA 2GQTA 5HHZA 1N5XA 2R2ZA 2RK5A 1F0XA 1AHVA 3ETRB 5L6GA 1W1QA 1FO4A 5AE1A 3NVYB 5FXPA 1DZNA 2GQUA 1N63C 2NQWA 3JS8A 2WDWA 3NVWB 2OAIA 3TSJA 3NS1B 1E0YA 4PVEA 2P13A 4PVJA 3RJAA 4ML8A 5G5HB 5FXFA 2VFUA 5D79A 1WVEA 1I19A 4OALA 4DNSA 2VFTA 2PLSA 1N61C 4BBYA 3FW7A 3I99A 3EUB3 1QLUA 1WVFA 3PM9A 4O95A 3W8WA 1E8FA 3GSYA 4PVHA 1N60C 4MLAA 4UD8A 3RJ8A 4JAYA 3B9JB 2O3GA 3POPA 1JROA 2W55A 4XLOA 5G5GB 4ZOHB 2Y3RA 3BW7A 2VFSA 2PLIA 2W3RA 3S1EA 4PWBA 3S1DA 5FXEA 1ZR6A 5AE3A 4BC7A 5AE2A 2IPIA 1RM6B 3KJMA 2BVFA 2W3SA 3TX1A 3VTEA 4HG0A 5L6FA 4PYTA 2Q4WA 2Q85A 3C0PA 1HSKA 3S1FA 5K8EA 3SR6B 3W8XA 1W1SA 1MBBA 1JRPA 1DIQA 1WYGA 3AMZA 2QPMA 5HMRA 3LAEA 1W1MA 1W1KA 2EXRA 4PVKA 1W1RA 5AWVA 3NVZB 1UXYA 4BC9A 2Y4GA 1T3QC 4BCAA 2P4PA 3D2JA 1DIIA 5I1VA 1W1JA 3W8ZA 3AN1A 2MBRA 2BVHA 5HQXA
chains in the Genus database with same CATH superfamily
2E3TA 2YVSA 5ADZA 3DEDA 3AM9A 1ZXIC 3HRDC 2Y3SA 2I0KA 1V97A 1N5WC 1W1OA 3NRZB 1AHUA 3DQ0A 3LLBA 2BVGA 4PWCA 1VDVA 1QLTA 1N62C 3HSUA 5I1WA 1AHZA 3D2HA 3EJDB 1FFVC 3NVVB 2VFRA 3FWAA 3TSHA 4EC3A 3EJBB 3EJEB 2VFVA 5FXDA 2AXRA 4PZFA 1FIQB 3S1CA 1W1LA 3FW8A 2P3HA 2VAOA 2R8DA 1MBTA 2W54A 2UUUA 2Y08A 3FW9A 1FFUC 2QKNA 1SB3B 3PQBA 1E8HA 3D2DA 4JB1A 1VAOA 1E8GA 2GQTA 5HHZA 1N5XA 2R2ZA 2RK5A 1F0XA 1AHVA 3ETRB 5L6GA 1W1QA 1FO4A 5AE1A 3NVYB 5FXPA 1DZNA 2GQUA 1N63C 2NQWA 3JS8A 2WDWA 3NVWB 2OAIA 3TSJA 3NS1B 1E0YA 4PVEA 2P13A 4PVJA 3RJAA 4ML8A 5G5HB 5FXFA 2UUVA 2VFUA 5D79A 1WVEA 1I19A 4OALA 4DNSA 2VFTA 2PLSA 1N61C 4BBYA 3FW7A 3I99A 3EUB3 1QLUA 1WVFA 3PM9A 4O95A 3W8WA 1E8FA 3GSYA 4PVHA 1N60C 4MLAA 4UD8A 3RJ8A 4JAYA 3B9JB 2O3GA 3POPA 1JROA 2W55A 4XLOA 5G5GB 4ZOHB 2Y3RA 3BW7A 2VFSA 2PLIA 2W3RA 3S1EA 4PWBA 3S1DA 5FXEA 1ZR6A 5AE3A 4BC7A 5AE2A 2IPIA 1RM6B 3KJMA 2BVFA 2W3SA 3TX1A 3VTEA 4HG0A 5L6FA 4PYTA 2Q4WA 2Q85A 3C0PA 1HSKA 3S1FA 5K8EA 3SR6B 3W8XA 1W1SA 1MBBA 1JRPA 1DIQA 1WYGA 3AMZA 2QPMA 5HMRA 3LAEA 1W1MA 1W1KA 2EXRA 4PVKA 1W1RA 5AWVA 3NVZB 1UXYA 4BC9A 2Y4GA 1T3QC 4BCAA 2P4PA 3D2JA 1DIIA 5I1VA 1W1JA 3W8ZA 3AN1A 2MBRA 2BVHA 5HQXA
chains in the Genus database with same CATH topology
2E3TA 2YVSA 5ADZA 3DEDA 3AM9A 1ZXIC 3HRDC 2Y3SA 2I0KA 1V97A 1N5WC 1W1OA 3NRZB 1AHUA 3DQ0A 3LLBA 2BVGA 4PWCA 1VDVA 1QLTA 1N62C 3HSUA 5I1WA 1AHZA 3D2HA 4EC3A 1FFVC 3NVVB 2VFRA 3FWAA 3TSHA 2VFVA 5FXDA 2AXRA 4PZFA 1FIQB 3S1CA 1W1LA 3FW8A 2P3HA 2VAOA 2R8DA 1MBTA 2W54A 2UUUA 2Y08A 3FW9A 1FFUC 2QKNA 1SB3B 3PQBA 1E8HA 3D2DA 4JB1A 1VAOA 1E8GA 2GQTA 5HHZA 1N5XA 2R2ZA 2RK5A 1F0XA 1AHVA 3ETRB 5L6GA 1W1QA 1FO4A 5AE1A 3NVYB 5FXPA 1DZNA 2GQUA 1N63C 2NQWA 3JS8A 2WDWA 3NVWB 2OAIA 3TSJA 3NS1B 1E0YA 4PVEA 2P13A 4PVJA 3RJAA 4ML8A 5G5HB 5FXFA 2UUVA 2VFUA 5D79A 1WVEA 1I19A 4OALA 4DNSA 2VFTA 2PLSA 1N61C 4BBYA 3FW7A 3I99A 3EUB3 1QLUA 1WVFA 3PM9A 4O95A 3W8WA 1E8FA 3GSYA 4PVHA 1N60C 4MLAA 4UD8A 3RJ8A 4JAYA 3B9JB 2O3GA 3POPA 1JROA 2W55A 4XLOA 5G5GB 4ZOHB 2Y3RA 3BW7A 2VFSA 2PLIA 2W3RA 3S1EA 4PWBA 3S1DA 5FXEA 1ZR6A 5AE3A 4BC7A 5AE2A 2IPIA 1RM6B 3KJMA 2BVFA 2W3SA 3TX1A 3VTEA 4HG0A 5L6FA 4PYTA 2Q4WA 2Q85A 3C0PA 1HSKA 3S1FA 5K8EA 3SR6B 3W8XA 1W1SA 1MBBA 1JRPA 1DIQA 1WYGA 3AMZA 2QPMA 5HMRA 3LAEA 1W1MA 1W1KA 2EXRA 4PVKA 1W1RA 5AWVA 3NVZB 1UXYA 4BC9A 2Y4GA 1T3QC 4BCAA 2P4PA 3D2JA 1DIIA 5I1VA 1W1JA 3W8ZA 3AN1A 2MBRA 2BVHA 5HQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E3T A;  2YVS A;  5ADZ A;  3DED A;  3AM9 A;  1ZXI C;  3HRD C;  2Y3S A;  2I0K A;  1V97 A;  1N5W C;  1W1O A;  3NRZ B;  1AHU A;  3DQ0 A;  3LLB A;  2BVG A;  4PWC A;  1VDV A;  1QLT A;  1N62 C;  3HSU A;  5I1W A;  1AHZ A;  3D2H A;  4EC3 A;  1FFV C;  3NVV B;  2VFR A;  3FWA A;  3TSH A;  2VFV A;  5FXD A;  2AXR A;  4PZF A;  1FIQ B;  3S1C A;  1W1L A;  3FW8 A;  2P3H A;  2VAO A;  2R8D A;  1MBT A;  2W54 A;  2Y08 A;  3FW9 A;  1FFU C;  2QKN A;  1SB3 B;  3PQB A;  1E8H A;  3D2D A;  4JB1 A;  1VAO A;  1E8G A;  2GQT A;  5HHZ A;  1N5X A;  2R2Z A;  2RK5 A;  1F0X A;  1AHV A;  3ETR B;  5L6G A;  1W1Q A;  1FO4 A;  5AE1 A;  3NVY B;  5FXP A;  1DZN A;  2GQU A;  1N63 C;  2NQW A;  3JS8 A;  2WDW A;  3NVW B;  2OAI A;  3TSJ A;  3NS1 B;  1E0Y A;  4PVE A;  2P13 A;  4PVJ A;  3RJA A;  4ML8 A;  5G5H B;  5FXF A;  2VFU A;  5D79 A;  1WVE A;  1I19 A;  4OAL A;  4DNS A;  2VFT A;  2PLS A;  1N61 C;  4BBY A;  3FW7 A;  3I99 A;  3EUB 3;  1QLU A;  1WVF A;  3PM9 A;  4O95 A;  3W8W A;  1E8F A;  3GSY A;  4PVH A;  1N60 C;  4MLA A;  4UD8 A;  3RJ8 A;  4JAY A;  3B9J B;  2O3G A;  3POP A;  1JRO A;  2W55 A;  4XLO A;  5G5G B;  4ZOH B;  2Y3R A;  3BW7 A;  2VFS A;  2PLI A;  2W3R A;  3S1E A;  4PWB A;  3S1D A;  5FXE A;  1ZR6 A;  5AE3 A;  4BC7 A;  5AE2 A;  2IPI A;  1RM6 B;  3KJM A;  2BVF A;  2W3S A;  3TX1 A;  3VTE A;  4HG0 A;  5L6F A;  4PYT A;  2Q4W A;  2Q85 A;  3C0P A;  1HSK A;  3S1F A;  5K8E A;  3SR6 B;  3W8X A;  1W1S A;  1MBB A;  1JRP A;  1DIQ A;  1WYG A;  3AMZ A;  2QPM A;  5HMR A;  3LAE A;  1W1M A;  1W1K A;  2EXR A;  4PVK A;  1W1R A;  5AWV A;  3NVZ B;  1UXY A;  4BC9 A;  2Y4G A;  1T3Q C;  4BCA A;  2P4P A;  3D2J A;  1DII A;  5I1V A;  1W1J A;  3W8Z A;  3AN1 A;  2MBR A;  2BVH A;  5HQX A; 
#chains in the Genus database with same CATH topology
 2E3T A;  2YVS A;  5ADZ A;  3DED A;  3AM9 A;  1ZXI C;  3HRD C;  2Y3S A;  2I0K A;  1V97 A;  1N5W C;  1W1O A;  3NRZ B;  1AHU A;  3DQ0 A;  3LLB A;  2BVG A;  4PWC A;  1VDV A;  1QLT A;  1N62 C;  3HSU A;  5I1W A;  1AHZ A;  3D2H A;  3EJD B;  1FFV C;  3NVV B;  2VFR A;  3FWA A;  3TSH A;  4EC3 A;  3EJB B;  3EJE B;  2VFV A;  5FXD A;  2AXR A;  4PZF A;  1FIQ B;  3S1C A;  1W1L A;  3FW8 A;  2P3H A;  2VAO A;  2R8D A;  1MBT A;  2W54 A;  2UUU A;  2Y08 A;  3FW9 A;  1FFU C;  2QKN A;  1SB3 B;  3PQB A;  1E8H A;  3D2D A;  4JB1 A;  1VAO A;  1E8G A;  2GQT A;  5HHZ A;  1N5X A;  2R2Z A;  2RK5 A;  1F0X A;  1AHV A;  3ETR B;  5L6G A;  1W1Q A;  1FO4 A;  5AE1 A;  3NVY B;  5FXP A;  1DZN A;  2GQU A;  1N63 C;  2NQW A;  3JS8 A;  2WDW A;  3NVW B;  2OAI A;  3TSJ A;  3NS1 B;  1E0Y A;  4PVE A;  2P13 A;  4PVJ A;  3RJA A;  4ML8 A;  5G5H B;  5FXF A;  2UUV A;  2VFU A;  5D79 A;  1WVE A;  1I19 A;  4OAL A;  4DNS A;  2VFT A;  2PLS A;  1N61 C;  4BBY A;  3FW7 A;  3I99 A;  3EUB 3;  1QLU A;  1WVF A;  3PM9 A;  4O95 A;  3W8W A;  1E8F A;  3GSY A;  4PVH A;  1N60 C;  4MLA A;  4UD8 A;  3RJ8 A;  4JAY A;  3B9J B;  2O3G A;  3POP A;  1JRO A;  2W55 A;  4XLO A;  5G5G B;  4ZOH B;  2Y3R A;  3BW7 A;  2VFS A;  2PLI A;  2W3R A;  3S1E A;  4PWB A;  3S1D A;  5FXE A;  1ZR6 A;  5AE3 A;  4BC7 A;  5AE2 A;  2IPI A;  1RM6 B;  3KJM A;  2BVF A;  2W3S A;  3TX1 A;  3VTE A;  4HG0 A;  5L6F A;  4PYT A;  2Q4W A;  2Q85 A;  3C0P A;  1HSK A;  3S1F A;  5K8E A;  3SR6 B;  3W8X A;  1W1S A;  1MBB A;  1JRP A;  1DIQ A;  1WYG A;  3AMZ A;  2QPM A;  5HMR A;  3LAE A;  1W1M A;  1W1K A;  2EXR A;  4PVK A;  1W1R A;  5AWV A;  3NVZ B;  1UXY A;  4BC9 A;  2Y4G A;  1T3Q C;  4BCA A;  2P4P A;  3D2J A;  1DII A;  5I1V A;  1W1J A;  3W8Z A;  3AN1 A;  2MBR A;  2BVH A;  5HQX A; 
#chains in the Genus database with same CATH homology
 2E3T A;  2YVS A;  5ADZ A;  3DED A;  3AM9 A;  1ZXI C;  3HRD C;  2Y3S A;  2I0K A;  1V97 A;  1N5W C;  1W1O A;  3NRZ B;  1AHU A;  3DQ0 A;  3LLB A;  2BVG A;  4PWC A;  1VDV A;  1QLT A;  1N62 C;  3HSU A;  5I1W A;  1AHZ A;  3D2H A;  4EC3 A;  1FFV C;  3NVV B;  2VFR A;  3FWA A;  3TSH A;  2VFV A;  5FXD A;  2AXR A;  4PZF A;  1FIQ B;  3S1C A;  1W1L A;  3FW8 A;  2P3H A;  2VAO A;  2R8D A;  1MBT A;  2W54 A;  2UUU A;  2Y08 A;  3FW9 A;  1FFU C;  2QKN A;  1SB3 B;  3PQB A;  1E8H A;  3D2D A;  4JB1 A;  1VAO A;  1E8G A;  2GQT A;  5HHZ A;  1N5X A;  2R2Z A;  2RK5 A;  1F0X A;  1AHV A;  3ETR B;  5L6G A;  1W1Q A;  1FO4 A;  5AE1 A;  3NVY B;  5FXP A;  1DZN A;  2GQU A;  1N63 C;  2NQW A;  3JS8 A;  2WDW A;  3NVW B;  2OAI A;  3TSJ A;  3NS1 B;  1E0Y A;  4PVE A;  2P13 A;  4PVJ A;  3RJA A;  4ML8 A;  5G5H B;  5FXF A;  2UUV A;  2VFU A;  5D79 A;  1WVE A;  1I19 A;  4OAL A;  4DNS A;  2VFT A;  2PLS A;  1N61 C;  4BBY A;  3FW7 A;  3I99 A;  3EUB 3;  1QLU A;  1WVF A;  3PM9 A;  4O95 A;  3W8W A;  1E8F A;  3GSY A;  4PVH A;  1N60 C;  4MLA A;  4UD8 A;  3RJ8 A;  4JAY A;  3B9J B;  2O3G A;  3POP A;  1JRO A;  2W55 A;  4XLO A;  5G5G B;  4ZOH B;  2Y3R A;  3BW7 A;  2VFS A;  2PLI A;  2W3R A;  3S1E A;  4PWB A;  3S1D A;  5FXE A;  1ZR6 A;  5AE3 A;  4BC7 A;  5AE2 A;  2IPI A;  1RM6 B;  3KJM A;  2BVF A;  2W3S A;  3TX1 A;  3VTE A;  4HG0 A;  5L6F A;  4PYT A;  2Q4W A;  2Q85 A;  3C0P A;  1HSK A;  3S1F A;  5K8E A;  3SR6 B;  3W8X A;  1W1S A;  1MBB A;  1JRP A;  1DIQ A;  1WYG A;  3AMZ A;  2QPM A;  5HMR A;  3LAE A;  1W1M A;  1W1K A;  2EXR A;  4PVK A;  1W1R A;  5AWV A;  3NVZ B;  1UXY A;  4BC9 A;  2Y4G A;  1T3Q C;  4BCA A;  2P4P A;  3D2J A;  1DII A;  5I1V A;  1W1J A;  3W8Z A;  3AN1 A;  2MBR A;  2BVH A;  5HQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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