3W8WA

The crystal structure of encm
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
460
structure length
460
Chain Sequence
QFPQLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Putative FAD-dependent oxygenase EncM
publication title Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
pubmed doi rcsb
source organism Streptomyces maritimus
total genus 138
structure length 460
sequence length 460
chains with identical sequence B
ec nomenclature ec 1.13.12.-:
pdb deposition date 2013-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3w8wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3w8wA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3w8wA03
3NVWB 3NS1B 2VFTA 2YVSA 1DIQA 4JB1A 3AN1A 1HSKA 4HG0A 1W1OA 1MBTA 3S1EA 1W1MA 1AHUA 4PVJA 3KJMA 1MBBA 3FWAA 3HSUA 4ML8A 2R2ZA 3DEDA 3TX1A 1ZXIC 3AM9A 4BC9A 5D79A 3W8WA 3LAEA 4MLAA 1DZNA 4PVHA 3BW7A 2QPMA 1E8GA 4PWCA 2W54A 1W1QA 4OALA 1AHVA 1WVFA 3POPA 2Q85A 3RJAA 3SR6B 1VDVA 4PYTA 5AWVA 1JRPA 1DIIA 4PVEA 1N5WC 3S1CA 5AE1A 2IPIA 2VFUA 2EXRA 3VTEA 2W3SA 3S1DA 2RK5A 1ZR6A 1W1LA 1W1SA 2VAOA 1E8HA 5AE2A 1F0XA 5G5HB 5I1VA 5AE3A 2OAIA 1E0YA 5G5GB 3ETRB 1N62C 3D2JA 1WYGA 4JAYA 3RJ8A 1FFVC 2PLSA 1AHZA 5HMRA 2W3RA 1N61C 4O95A 4DNSA 2PLIA 2R8DA 3LLBA 5FXFA 1QLUA 5K8EA 3TSJA 4EC3A 3NVVB 2VFVA 2AXRA 2BVFA 1V97A 2MBRA 3W8ZA 5HQXA 3EUB3 2P3HA 3C0PA 3FW8A 3NVZB 1I19A 2Y3RA 5L6FA 5FXDA 2QKNA 1WVEA 3S1FA 2P13A 2W55A 4ZOHB 5L6GA 1JROA 2GQTA 2GQUA 5FXPA 3FW7A 2BVHA 3TSHA 1UXYA 2Y4GA 4XLOA 4BC7A 2WDWA 3B9JB 4BBYA 3NVYB 2VFSA 2BVGA 3AMZA 3JS8A 1W1RA 1FFUC 3PQBA 5HHZA 3FW9A 2Y3SA 1E8FA 4PWBA 3GSYA 4UD8A 1VAOA 2O3GA 1W1KA 2P4PA 2NQWA 2VFRA 4PZFA 1N60C 1FIQB 5I1WA 1W1JA 1QLTA 1N63C 1FO4A 3DQ0A 3D2DA 2I0KA 5FXEA 3HRDC 4BCAA 1SB3B 2Y08A 3PM9A 4PVKA 2Q4WA 3I99A 5ADZA 1T3QC 3W8XA 2E3TA 3D2HA 1RM6B 1N5XA 3NRZB
chains in the Genus database with same CATH superfamily
3NVWB 3NS1B 2VFTA 2YVSA 1DIQA 4JB1A 3AN1A 1HSKA 4HG0A 1W1OA 1MBTA 3S1EA 1W1MA 1AHUA 4PVJA 3KJMA 1MBBA 3FWAA 2UUVA 3HSUA 4ML8A 2R2ZA 3DEDA 3TX1A 1ZXIC 3AM9A 3EJBB 4BC9A 5D79A 3W8WA 3LAEA 4MLAA 1DZNA 4PVHA 3BW7A 2QPMA 1E8GA 4PWCA 2W54A 1W1QA 4OALA 1AHVA 1WVFA 3POPA 2Q85A 3RJAA 3SR6B 1VDVA 4PYTA 5AWVA 1JRPA 1DIIA 4PVEA 1N5WC 3S1CA 5AE1A 2IPIA 2VFUA 2EXRA 3VTEA 2W3SA 3S1DA 2RK5A 1ZR6A 1W1LA 1W1SA 2VAOA 1E8HA 5AE2A 1F0XA 5G5HB 5I1VA 5AE3A 2OAIA 1E0YA 5G5GB 3ETRB 1N62C 3D2JA 1WYGA 4JAYA 3RJ8A 1FFVC 2PLSA 1AHZA 5HMRA 2W3RA 1N61C 4O95A 4DNSA 2PLIA 2R8DA 3LLBA 5FXFA 1QLUA 5K8EA 3TSJA 3NVVB 4EC3A 2VFVA 2AXRA 2BVFA 1V97A 2MBRA 3W8ZA 5HQXA 3EUB3 2P3HA 3C0PA 3FW8A 3NVZB 1I19A 2UUUA 2Y3RA 5L6FA 5FXDA 2QKNA 1WVEA 3S1FA 2P13A 2W55A 4ZOHB 3EJEB 5L6GA 1JROA 3EJDB 2GQTA 2GQUA 5FXPA 3FW7A 2BVHA 3TSHA 1UXYA 2Y4GA 4XLOA 4BC7A 2WDWA 3B9JB 3NVYB 4BBYA 2VFSA 2BVGA 3AMZA 3JS8A 1W1RA 1FFUC 3PQBA 5HHZA 3FW9A 2Y3SA 1E8FA 4PWBA 3GSYA 4UD8A 1VAOA 2O3GA 1W1KA 2P4PA 2NQWA 2VFRA 4PZFA 1N60C 1FIQB 5I1WA 1W1JA 1QLTA 1N63C 1FO4A 3DQ0A 3D2DA 2I0KA 5FXEA 3HRDC 4BCAA 1SB3B 2Y08A 3PM9A 4PVKA 2Q4WA 3I99A 5ADZA 1T3QC 3W8XA 2E3TA 3D2HA 1RM6B 1N5XA 3NRZB
chains in the Genus database with same CATH topology
3NVWB 3NS1B 2VFTA 2YVSA 1DIQA 4JB1A 3AN1A 1HSKA 4HG0A 1W1OA 1MBTA 3S1EA 1W1MA 1AHUA 4PVJA 3KJMA 1MBBA 3FWAA 2UUVA 3HSUA 4ML8A 2R2ZA 3DEDA 3TX1A 1ZXIC 3AM9A 4BC9A 5D79A 3W8WA 3LAEA 4MLAA 1DZNA 4PVHA 3BW7A 2QPMA 1E8GA 4PWCA 2W54A 1W1QA 4OALA 1AHVA 1WVFA 3POPA 2Q85A 3RJAA 3SR6B 1VDVA 4PYTA 5AWVA 1JRPA 1DIIA 4PVEA 1N5WC 3S1CA 5AE1A 2IPIA 2VFUA 2EXRA 3VTEA 2W3SA 3S1DA 2RK5A 1ZR6A 1W1LA 1W1SA 2VAOA 1E8HA 5AE2A 1F0XA 5G5HB 5I1VA 5AE3A 2OAIA 1E0YA 5G5GB 3ETRB 1N62C 3D2JA 1WYGA 4JAYA 3RJ8A 1FFVC 2PLSA 1AHZA 5HMRA 2W3RA 1N61C 4O95A 4DNSA 2PLIA 2R8DA 3LLBA 5FXFA 1QLUA 5K8EA 3TSJA 4EC3A 3NVVB 2VFVA 2AXRA 2BVFA 1V97A 2MBRA 3W8ZA 5HQXA 3EUB3 2P3HA 3C0PA 3FW8A 3NVZB 1I19A 2UUUA 2Y3RA 5L6FA 5FXDA 2QKNA 1WVEA 3S1FA 2P13A 2W55A 4ZOHB 5L6GA 1JROA 2GQTA 2GQUA 5FXPA 3FW7A 2BVHA 3TSHA 1UXYA 2Y4GA 4XLOA 4BC7A 2WDWA 3B9JB 4BBYA 3NVYB 2VFSA 2BVGA 3AMZA 3JS8A 1W1RA 1FFUC 3PQBA 5HHZA 3FW9A 2Y3SA 1E8FA 4PWBA 3GSYA 4UD8A 1VAOA 2O3GA 1W1KA 2P4PA 2NQWA 2VFRA 4PZFA 1N60C 1FIQB 5I1WA 1W1JA 1QLTA 1N63C 1FO4A 3DQ0A 3D2DA 2I0KA 5FXEA 3HRDC 4BCAA 1SB3B 2Y08A 3PM9A 4PVKA 2Q4WA 3I99A 5ADZA 1T3QC 3W8XA 2E3TA 3D2HA 1RM6B 1N5XA 3NRZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NVW B;  3NS1 B;  2VFT A;  2YVS A;  1DIQ A;  4JB1 A;  3AN1 A;  1HSK A;  4HG0 A;  1W1O A;  1MBT A;  3S1E A;  1W1M A;  1AHU A;  4PVJ A;  3KJM A;  1MBB A;  3FWA A;  3HSU A;  4ML8 A;  2R2Z A;  3DED A;  3TX1 A;  1ZXI C;  3AM9 A;  4BC9 A;  5D79 A;  3W8W A;  3LAE A;  4MLA A;  1DZN A;  4PVH A;  3BW7 A;  2QPM A;  1E8G A;  4PWC A;  2W54 A;  1W1Q A;  4OAL A;  1AHV A;  1WVF A;  3POP A;  2Q85 A;  3RJA A;  3SR6 B;  1VDV A;  4PYT A;  5AWV A;  1JRP A;  1DII A;  4PVE A;  1N5W C;  3S1C A;  5AE1 A;  2IPI A;  2VFU A;  2EXR A;  3VTE A;  2W3S A;  3S1D A;  2RK5 A;  1ZR6 A;  1W1L A;  1W1S A;  2VAO A;  1E8H A;  5AE2 A;  1F0X A;  5G5H B;  5I1V A;  5AE3 A;  2OAI A;  1E0Y A;  5G5G B;  3ETR B;  1N62 C;  3D2J A;  1WYG A;  4JAY A;  3RJ8 A;  1FFV C;  2PLS A;  1AHZ A;  5HMR A;  2W3R A;  1N61 C;  4O95 A;  4DNS A;  2PLI A;  2R8D A;  3LLB A;  5FXF A;  1QLU A;  5K8E A;  3TSJ A;  4EC3 A;  3NVV B;  2VFV A;  2AXR A;  2BVF A;  1V97 A;  2MBR A;  3W8Z A;  5HQX A;  3EUB 3;  2P3H A;  3C0P A;  3FW8 A;  3NVZ B;  1I19 A;  2Y3R A;  5L6F A;  5FXD A;  2QKN A;  1WVE A;  3S1F A;  2P13 A;  2W55 A;  4ZOH B;  5L6G A;  1JRO A;  2GQT A;  2GQU A;  5FXP A;  3FW7 A;  2BVH A;  3TSH A;  1UXY A;  2Y4G A;  4XLO A;  4BC7 A;  2WDW A;  3B9J B;  4BBY A;  3NVY B;  2VFS A;  2BVG A;  3AMZ A;  3JS8 A;  1W1R A;  1FFU C;  3PQB A;  5HHZ A;  3FW9 A;  2Y3S A;  1E8F A;  4PWB A;  3GSY A;  4UD8 A;  1VAO A;  2O3G A;  1W1K A;  2P4P A;  2NQW A;  2VFR A;  4PZF A;  1N60 C;  1FIQ B;  5I1W A;  1W1J A;  1QLT A;  1N63 C;  1FO4 A;  3DQ0 A;  3D2D A;  2I0K A;  5FXE A;  3HRD C;  4BCA A;  1SB3 B;  2Y08 A;  3PM9 A;  4PVK A;  2Q4W A;  3I99 A;  5ADZ A;  1T3Q C;  3W8X A;  2E3T A;  3D2H A;  1RM6 B;  1N5X A;  3NRZ B; 
#chains in the Genus database with same CATH topology
 3NVW B;  3NS1 B;  2VFT A;  2YVS A;  1DIQ A;  4JB1 A;  3AN1 A;  1HSK A;  4HG0 A;  1W1O A;  1MBT A;  3S1E A;  1W1M A;  1AHU A;  4PVJ A;  3KJM A;  1MBB A;  3FWA A;  2UUV A;  3HSU A;  4ML8 A;  2R2Z A;  3DED A;  3TX1 A;  1ZXI C;  3AM9 A;  3EJB B;  4BC9 A;  5D79 A;  3W8W A;  3LAE A;  4MLA A;  1DZN A;  4PVH A;  3BW7 A;  2QPM A;  1E8G A;  4PWC A;  2W54 A;  1W1Q A;  4OAL A;  1AHV A;  1WVF A;  3POP A;  2Q85 A;  3RJA A;  3SR6 B;  1VDV A;  4PYT A;  5AWV A;  1JRP A;  1DII A;  4PVE A;  1N5W C;  3S1C A;  5AE1 A;  2IPI A;  2VFU A;  2EXR A;  3VTE A;  2W3S A;  3S1D A;  2RK5 A;  1ZR6 A;  1W1L A;  1W1S A;  2VAO A;  1E8H A;  5AE2 A;  1F0X A;  5G5H B;  5I1V A;  5AE3 A;  2OAI A;  1E0Y A;  5G5G B;  3ETR B;  1N62 C;  3D2J A;  1WYG A;  4JAY A;  3RJ8 A;  1FFV C;  2PLS A;  1AHZ A;  5HMR A;  2W3R A;  1N61 C;  4O95 A;  4DNS A;  2PLI A;  2R8D A;  3LLB A;  5FXF A;  1QLU A;  5K8E A;  3TSJ A;  3NVV B;  4EC3 A;  2VFV A;  2AXR A;  2BVF A;  1V97 A;  2MBR A;  3W8Z A;  5HQX A;  3EUB 3;  2P3H A;  3C0P A;  3FW8 A;  3NVZ B;  1I19 A;  2UUU A;  2Y3R A;  5L6F A;  5FXD A;  2QKN A;  1WVE A;  3S1F A;  2P13 A;  2W55 A;  4ZOH B;  3EJE B;  5L6G A;  1JRO A;  3EJD B;  2GQT A;  2GQU A;  5FXP A;  3FW7 A;  2BVH A;  3TSH A;  1UXY A;  2Y4G A;  4XLO A;  4BC7 A;  2WDW A;  3B9J B;  3NVY B;  4BBY A;  2VFS A;  2BVG A;  3AMZ A;  3JS8 A;  1W1R A;  1FFU C;  3PQB A;  5HHZ A;  3FW9 A;  2Y3S A;  1E8F A;  4PWB A;  3GSY A;  4UD8 A;  1VAO A;  2O3G A;  1W1K A;  2P4P A;  2NQW A;  2VFR A;  4PZF A;  1N60 C;  1FIQ B;  5I1W A;  1W1J A;  1QLT A;  1N63 C;  1FO4 A;  3DQ0 A;  3D2D A;  2I0K A;  5FXE A;  3HRD C;  4BCA A;  1SB3 B;  2Y08 A;  3PM9 A;  4PVK A;  2Q4W A;  3I99 A;  5ADZ A;  1T3Q C;  3W8X A;  2E3T A;  3D2H A;  1RM6 B;  1N5X A;  3NRZ B; 
#chains in the Genus database with same CATH homology
 3NVW B;  3NS1 B;  2VFT A;  2YVS A;  1DIQ A;  4JB1 A;  3AN1 A;  1HSK A;  4HG0 A;  1W1O A;  1MBT A;  3S1E A;  1W1M A;  1AHU A;  4PVJ A;  3KJM A;  1MBB A;  3FWA A;  2UUV A;  3HSU A;  4ML8 A;  2R2Z A;  3DED A;  3TX1 A;  1ZXI C;  3AM9 A;  4BC9 A;  5D79 A;  3W8W A;  3LAE A;  4MLA A;  1DZN A;  4PVH A;  3BW7 A;  2QPM A;  1E8G A;  4PWC A;  2W54 A;  1W1Q A;  4OAL A;  1AHV A;  1WVF A;  3POP A;  2Q85 A;  3RJA A;  3SR6 B;  1VDV A;  4PYT A;  5AWV A;  1JRP A;  1DII A;  4PVE A;  1N5W C;  3S1C A;  5AE1 A;  2IPI A;  2VFU A;  2EXR A;  3VTE A;  2W3S A;  3S1D A;  2RK5 A;  1ZR6 A;  1W1L A;  1W1S A;  2VAO A;  1E8H A;  5AE2 A;  1F0X A;  5G5H B;  5I1V A;  5AE3 A;  2OAI A;  1E0Y A;  5G5G B;  3ETR B;  1N62 C;  3D2J A;  1WYG A;  4JAY A;  3RJ8 A;  1FFV C;  2PLS A;  1AHZ A;  5HMR A;  2W3R A;  1N61 C;  4O95 A;  4DNS A;  2PLI A;  2R8D A;  3LLB A;  5FXF A;  1QLU A;  5K8E A;  3TSJ A;  4EC3 A;  3NVV B;  2VFV A;  2AXR A;  2BVF A;  1V97 A;  2MBR A;  3W8Z A;  5HQX A;  3EUB 3;  2P3H A;  3C0P A;  3FW8 A;  3NVZ B;  1I19 A;  2UUU A;  2Y3R A;  5L6F A;  5FXD A;  2QKN A;  1WVE A;  3S1F A;  2P13 A;  2W55 A;  4ZOH B;  5L6G A;  1JRO A;  2GQT A;  2GQU A;  5FXP A;  3FW7 A;  2BVH A;  3TSH A;  1UXY A;  2Y4G A;  4XLO A;  4BC7 A;  2WDW A;  3B9J B;  4BBY A;  3NVY B;  2VFS A;  2BVG A;  3AMZ A;  3JS8 A;  1W1R A;  1FFU C;  3PQB A;  5HHZ A;  3FW9 A;  2Y3S A;  1E8F A;  4PWB A;  3GSY A;  4UD8 A;  1VAO A;  2O3G A;  1W1K A;  2P4P A;  2NQW A;  2VFR A;  4PZF A;  1N60 C;  1FIQ B;  5I1W A;  1W1J A;  1QLT A;  1N63 C;  1FO4 A;  3DQ0 A;  3D2D A;  2I0K A;  5FXE A;  3HRD C;  4BCA A;  1SB3 B;  2Y08 A;  3PM9 A;  4PVK A;  2Q4W A;  3I99 A;  5ADZ A;  1T3Q C;  3W8X A;  2E3T A;  3D2H A;  1RM6 B;  1N5X A;  3NRZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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