3W8WA

The crystal structure of encm
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
460
structure length
460
Chain Sequence
QFPQLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative FAD-dependent oxygenase EncM
publication title Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
pubmed doi rcsb
source organism Streptomyces maritimus
molecule tags Oxidoreductase
total genus 138
structure length 460
sequence length 460
chains with identical sequence B
ec nomenclature ec 1.13.12.-:
pdb deposition date 2013-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3w8wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3w8wA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3w8wA03
1UXYA 2RK5A 2R8DA 1SB3B 4PVEA 3PQBA 4JAYA 4UD8A 3W8WA 3POPA 1FFVC 2E3TA 2WDWA 3NVVB 1N62C 1MBBA 1V97A 3S1DA 4PZFA 3LAEA 4XLOA 3B9JB 3FWAA 1DIQA 3TSJA 1W1RA 2NQWA 2P4PA 5L6FA 2BVFA 3ETRB 2MBRA 2BVHA 2I0KA 1W1KA 1E0YA 2VFRA 2VFUA 3VTEA 2VAOA 1N60C 3PM9A 5AE3A 3RJAA 1QLTA 5K8EA 4BBYA 2QKNA 4JB1A 1FIQB 3HSUA 3FW9A 3NS1B 4PYTA 1WVFA 2BVGA 4PWCA 2OAIA 1QLUA 5FXFA 2QPMA 2YVSA 3W8ZA 3BW7A 4DNSA 4MLAA 5FXEA 4HG0A 2Y3SA 3S1EA 5I1VA 3W8XA 1W1LA 1E8GA 3FW8A 2W3SA 1VAOA 3KJMA 3D2HA 1W1OA 2W55A 1E8HA 4ZOHB 1FFUC 3S1CA 3LLBA 3NVYB 3NVZB 1WVEA 1FO4A 2VFSA 1ZXIC 4BC7A 2AXRA 4BCAA 2VFVA 2R2ZA 5D79A 3RJ8A 2Y3RA 1HSKA 1JROA 1W1SA 5ADZA 2O3GA 2P13A 1AHZA 3TSHA 1RM6B 3GSYA 1F0XA 3DEDA 2Y08A 5FXPA 2EXRA 4O95A 3NRZB 3D2DA 1DIIA 3HRDC 3DQ0A 1W1QA 1E8FA 3D2JA 2Q4WA 1MBTA 5G5GB 2VFTA 1WYGA 5AWVA 5G5HB 4BC9A 2W54A 4OALA 2GQTA 3FW7A 1AHVA 3C0PA 5HMRA 5I1WA 5L6GA 4ML8A 1W1MA 1T3QC 3NVWB 3AM9A 3TX1A 4PWBA 2Y4GA 1I19A 2P3HA 4EC3A 4PVJA 3SR6B 1W1JA 1AHUA 4PVKA 3S1FA 1VDVA 5HHZA 1N5XA 5AE2A 3EUB3 3JS8A 5HQXA 1JRPA 2W3RA 1N5WC 2PLIA 2Q85A 1ZR6A 2PLSA 3I99A 2IPIA 1N61C 3AN1A 1DZNA 5FXDA 3AMZA 1N63C 2GQUA 5AE1A 4PVHA
chains in the Genus database with same CATH superfamily
1UXYA 2RK5A 2R8DA 1SB3B 4PVEA 3PQBA 4JAYA 4UD8A 3W8WA 3POPA 1FFVC 2E3TA 2WDWA 3NVVB 1N62C 1MBBA 1V97A 3S1DA 4PZFA 3LAEA 4XLOA 3B9JB 3FWAA 1DIQA 3TSJA 1W1RA 2NQWA 2P4PA 5L6FA 2BVFA 3ETRB 2MBRA 2BVHA 2I0KA 1W1KA 1E0YA 2VFRA 2VFUA 3VTEA 2VAOA 1N60C 3PM9A 5AE3A 3RJAA 1QLTA 5K8EA 4BBYA 2QKNA 4JB1A 1FIQB 3HSUA 3FW9A 3NS1B 4PYTA 1WVFA 2BVGA 4PWCA 2OAIA 1QLUA 5FXFA 2QPMA 2YVSA 3W8ZA 3BW7A 4DNSA 4MLAA 5FXEA 2Y3SA 4HG0A 3S1EA 5I1VA 3W8XA 1W1LA 1E8GA 3FW8A 2W3SA 1VAOA 3EJBB 3KJMA 3D2HA 1W1OA 2W55A 1E8HA 4ZOHB 1FFUC 3EJDB 3S1CA 3LLBA 3NVYB 3NVZB 1WVEA 1FO4A 2VFSA 1ZXIC 4BC7A 2AXRA 2UUUA 4BCAA 2VFVA 2R2ZA 5D79A 3RJ8A 2Y3RA 1HSKA 1JROA 1W1SA 5ADZA 2O3GA 2P13A 1AHZA 3TSHA 1RM6B 3GSYA 1F0XA 3DEDA 2Y08A 5FXPA 2EXRA 4O95A 3NRZB 3D2DA 1DIIA 3HRDC 3DQ0A 1W1QA 1E8FA 3D2JA 2Q4WA 3EJEB 1MBTA 5G5GB 2VFTA 1WYGA 5AWVA 5G5HB 4BC9A 2W54A 4OALA 2GQTA 3FW7A 1AHVA 3C0PA 5HMRA 5I1WA 5L6GA 4ML8A 1W1MA 1T3QC 3NVWB 3AM9A 3TX1A 4PWBA 2Y4GA 1I19A 2P3HA 4EC3A 4PVJA 3SR6B 1W1JA 1AHUA 4PVKA 3S1FA 1VDVA 5HHZA 1N5XA 5AE2A 3EUB3 3JS8A 5HQXA 1JRPA 2W3RA 1N5WC 2PLIA 2Q85A 1ZR6A 2PLSA 2UUVA 3I99A 2IPIA 1N61C 3AN1A 1DZNA 5FXDA 3AMZA 1N63C 2GQUA 5AE1A 4PVHA
chains in the Genus database with same CATH topology
1UXYA 2RK5A 2R8DA 1SB3B 4PVEA 3PQBA 4JAYA 4UD8A 3W8WA 3POPA 1FFVC 2E3TA 2WDWA 3NVVB 1N62C 1MBBA 1V97A 3S1DA 4PZFA 3LAEA 4XLOA 3B9JB 3FWAA 1DIQA 3TSJA 1W1RA 2NQWA 2P4PA 5L6FA 2BVFA 3ETRB 2MBRA 2BVHA 2I0KA 1W1KA 1E0YA 2VFRA 2VFUA 3VTEA 2VAOA 1N60C 3PM9A 5AE3A 3RJAA 1QLTA 5K8EA 4BBYA 2QKNA 4JB1A 1FIQB 3HSUA 3FW9A 3NS1B 4PYTA 1WVFA 2BVGA 4PWCA 2OAIA 1QLUA 5FXFA 2QPMA 2YVSA 3W8ZA 3BW7A 4DNSA 4MLAA 5FXEA 2Y3SA 4HG0A 3S1EA 5I1VA 3W8XA 1W1LA 1E8GA 3FW8A 2W3SA 1VAOA 3KJMA 3D2HA 1W1OA 2W55A 1E8HA 4ZOHB 1FFUC 3S1CA 3LLBA 3NVYB 3NVZB 1WVEA 1FO4A 2VFSA 1ZXIC 4BC7A 2AXRA 2UUUA 4BCAA 2VFVA 2R2ZA 5D79A 3RJ8A 2Y3RA 1HSKA 1JROA 1W1SA 5ADZA 2O3GA 2P13A 1AHZA 3TSHA 1RM6B 3GSYA 1F0XA 3DEDA 2Y08A 5FXPA 2EXRA 4O95A 3NRZB 3D2DA 1DIIA 3HRDC 3DQ0A 1W1QA 1E8FA 3D2JA 2Q4WA 1MBTA 5G5GB 2VFTA 1WYGA 5AWVA 5G5HB 4BC9A 2W54A 4OALA 2GQTA 3FW7A 1AHVA 3C0PA 5HMRA 5I1WA 5L6GA 4ML8A 1W1MA 1T3QC 3NVWB 3AM9A 3TX1A 4PWBA 2Y4GA 1I19A 2P3HA 4EC3A 4PVJA 3SR6B 1W1JA 1AHUA 4PVKA 3S1FA 1VDVA 5HHZA 1N5XA 5AE2A 3EUB3 3JS8A 5HQXA 1JRPA 2W3RA 1N5WC 2PLIA 2Q85A 1ZR6A 2PLSA 2UUVA 3I99A 2IPIA 1N61C 3AN1A 1DZNA 5FXDA 3AMZA 1N63C 2GQUA 5AE1A 4PVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UXY A;  2RK5 A;  2R8D A;  1SB3 B;  4PVE A;  3PQB A;  4JAY A;  4UD8 A;  3W8W A;  3POP A;  1FFV C;  2E3T A;  2WDW A;  3NVV B;  1N62 C;  1MBB A;  1V97 A;  3S1D A;  4PZF A;  3LAE A;  4XLO A;  3B9J B;  3FWA A;  1DIQ A;  3TSJ A;  1W1R A;  2NQW A;  2P4P A;  5L6F A;  2BVF A;  3ETR B;  2MBR A;  2BVH A;  2I0K A;  1W1K A;  1E0Y A;  2VFR A;  2VFU A;  3VTE A;  2VAO A;  1N60 C;  3PM9 A;  5AE3 A;  3RJA A;  1QLT A;  5K8E A;  4BBY A;  2QKN A;  4JB1 A;  1FIQ B;  3HSU A;  3FW9 A;  3NS1 B;  4PYT A;  1WVF A;  2BVG A;  4PWC A;  2OAI A;  1QLU A;  5FXF A;  2QPM A;  2YVS A;  3W8Z A;  3BW7 A;  4DNS A;  4MLA A;  5FXE A;  4HG0 A;  2Y3S A;  3S1E A;  5I1V A;  3W8X A;  1W1L A;  1E8G A;  3FW8 A;  2W3S A;  1VAO A;  3KJM A;  3D2H A;  1W1O A;  2W55 A;  1E8H A;  4ZOH B;  1FFU C;  3S1C A;  3LLB A;  3NVY B;  3NVZ B;  1WVE A;  1FO4 A;  2VFS A;  1ZXI C;  4BC7 A;  2AXR A;  4BCA A;  2VFV A;  2R2Z A;  5D79 A;  3RJ8 A;  2Y3R A;  1HSK A;  1JRO A;  1W1S A;  5ADZ A;  2O3G A;  2P13 A;  1AHZ A;  3TSH A;  1RM6 B;  3GSY A;  1F0X A;  3DED A;  2Y08 A;  5FXP A;  2EXR A;  4O95 A;  3NRZ B;  3D2D A;  1DII A;  3HRD C;  3DQ0 A;  1W1Q A;  1E8F A;  3D2J A;  2Q4W A;  1MBT A;  5G5G B;  2VFT A;  1WYG A;  5AWV A;  5G5H B;  4BC9 A;  2W54 A;  4OAL A;  2GQT A;  3FW7 A;  1AHV A;  3C0P A;  5HMR A;  5I1W A;  5L6G A;  4ML8 A;  1W1M A;  1T3Q C;  3NVW B;  3AM9 A;  3TX1 A;  4PWB A;  2Y4G A;  1I19 A;  2P3H A;  4EC3 A;  4PVJ A;  3SR6 B;  1W1J A;  1AHU A;  4PVK A;  3S1F A;  1VDV A;  5HHZ A;  1N5X A;  5AE2 A;  3EUB 3;  3JS8 A;  5HQX A;  1JRP A;  2W3R A;  1N5W C;  2PLI A;  2Q85 A;  1ZR6 A;  2PLS A;  3I99 A;  2IPI A;  1N61 C;  3AN1 A;  1DZN A;  5FXD A;  3AMZ A;  1N63 C;  2GQU A;  5AE1 A;  4PVH A; 
#chains in the Genus database with same CATH topology
 1UXY A;  2RK5 A;  2R8D A;  1SB3 B;  4PVE A;  3PQB A;  4JAY A;  4UD8 A;  3W8W A;  3POP A;  1FFV C;  2E3T A;  2WDW A;  3NVV B;  1N62 C;  1MBB A;  1V97 A;  3S1D A;  4PZF A;  3LAE A;  4XLO A;  3B9J B;  3FWA A;  1DIQ A;  3TSJ A;  1W1R A;  2NQW A;  2P4P A;  5L6F A;  2BVF A;  3ETR B;  2MBR A;  2BVH A;  2I0K A;  1W1K A;  1E0Y A;  2VFR A;  2VFU A;  3VTE A;  2VAO A;  1N60 C;  3PM9 A;  5AE3 A;  3RJA A;  1QLT A;  5K8E A;  4BBY A;  2QKN A;  4JB1 A;  1FIQ B;  3HSU A;  3FW9 A;  3NS1 B;  4PYT A;  1WVF A;  2BVG A;  4PWC A;  2OAI A;  1QLU A;  5FXF A;  2QPM A;  2YVS A;  3W8Z A;  3BW7 A;  4DNS A;  4MLA A;  5FXE A;  2Y3S A;  4HG0 A;  3S1E A;  5I1V A;  3W8X A;  1W1L A;  1E8G A;  3FW8 A;  2W3S A;  1VAO A;  3EJB B;  3KJM A;  3D2H A;  1W1O A;  2W55 A;  1E8H A;  4ZOH B;  1FFU C;  3EJD B;  3S1C A;  3LLB A;  3NVY B;  3NVZ B;  1WVE A;  1FO4 A;  2VFS A;  1ZXI C;  4BC7 A;  2AXR A;  2UUU A;  4BCA A;  2VFV A;  2R2Z A;  5D79 A;  3RJ8 A;  2Y3R A;  1HSK A;  1JRO A;  1W1S A;  5ADZ A;  2O3G A;  2P13 A;  1AHZ A;  3TSH A;  1RM6 B;  3GSY A;  1F0X A;  3DED A;  2Y08 A;  5FXP A;  2EXR A;  4O95 A;  3NRZ B;  3D2D A;  1DII A;  3HRD C;  3DQ0 A;  1W1Q A;  1E8F A;  3D2J A;  2Q4W A;  3EJE B;  1MBT A;  5G5G B;  2VFT A;  1WYG A;  5AWV A;  5G5H B;  4BC9 A;  2W54 A;  4OAL A;  2GQT A;  3FW7 A;  1AHV A;  3C0P A;  5HMR A;  5I1W A;  5L6G A;  4ML8 A;  1W1M A;  1T3Q C;  3NVW B;  3AM9 A;  3TX1 A;  4PWB A;  2Y4G A;  1I19 A;  2P3H A;  4EC3 A;  4PVJ A;  3SR6 B;  1W1J A;  1AHU A;  4PVK A;  3S1F A;  1VDV A;  5HHZ A;  1N5X A;  5AE2 A;  3EUB 3;  3JS8 A;  5HQX A;  1JRP A;  2W3R A;  1N5W C;  2PLI A;  2Q85 A;  1ZR6 A;  2PLS A;  2UUV A;  3I99 A;  2IPI A;  1N61 C;  3AN1 A;  1DZN A;  5FXD A;  3AMZ A;  1N63 C;  2GQU A;  5AE1 A;  4PVH A; 
#chains in the Genus database with same CATH homology
 1UXY A;  2RK5 A;  2R8D A;  1SB3 B;  4PVE A;  3PQB A;  4JAY A;  4UD8 A;  3W8W A;  3POP A;  1FFV C;  2E3T A;  2WDW A;  3NVV B;  1N62 C;  1MBB A;  1V97 A;  3S1D A;  4PZF A;  3LAE A;  4XLO A;  3B9J B;  3FWA A;  1DIQ A;  3TSJ A;  1W1R A;  2NQW A;  2P4P A;  5L6F A;  2BVF A;  3ETR B;  2MBR A;  2BVH A;  2I0K A;  1W1K A;  1E0Y A;  2VFR A;  2VFU A;  3VTE A;  2VAO A;  1N60 C;  3PM9 A;  5AE3 A;  3RJA A;  1QLT A;  5K8E A;  4BBY A;  2QKN A;  4JB1 A;  1FIQ B;  3HSU A;  3FW9 A;  3NS1 B;  4PYT A;  1WVF A;  2BVG A;  4PWC A;  2OAI A;  1QLU A;  5FXF A;  2QPM A;  2YVS A;  3W8Z A;  3BW7 A;  4DNS A;  4MLA A;  5FXE A;  2Y3S A;  4HG0 A;  3S1E A;  5I1V A;  3W8X A;  1W1L A;  1E8G A;  3FW8 A;  2W3S A;  1VAO A;  3KJM A;  3D2H A;  1W1O A;  2W55 A;  1E8H A;  4ZOH B;  1FFU C;  3S1C A;  3LLB A;  3NVY B;  3NVZ B;  1WVE A;  1FO4 A;  2VFS A;  1ZXI C;  4BC7 A;  2AXR A;  2UUU A;  4BCA A;  2VFV A;  2R2Z A;  5D79 A;  3RJ8 A;  2Y3R A;  1HSK A;  1JRO A;  1W1S A;  5ADZ A;  2O3G A;  2P13 A;  1AHZ A;  3TSH A;  1RM6 B;  3GSY A;  1F0X A;  3DED A;  2Y08 A;  5FXP A;  2EXR A;  4O95 A;  3NRZ B;  3D2D A;  1DII A;  3HRD C;  3DQ0 A;  1W1Q A;  1E8F A;  3D2J A;  2Q4W A;  1MBT A;  5G5G B;  2VFT A;  1WYG A;  5AWV A;  5G5H B;  4BC9 A;  2W54 A;  4OAL A;  2GQT A;  3FW7 A;  1AHV A;  3C0P A;  5HMR A;  5I1W A;  5L6G A;  4ML8 A;  1W1M A;  1T3Q C;  3NVW B;  3AM9 A;  3TX1 A;  4PWB A;  2Y4G A;  1I19 A;  2P3H A;  4EC3 A;  4PVJ A;  3SR6 B;  1W1J A;  1AHU A;  4PVK A;  3S1F A;  1VDV A;  5HHZ A;  1N5X A;  5AE2 A;  3EUB 3;  3JS8 A;  5HQX A;  1JRP A;  2W3R A;  1N5W C;  2PLI A;  2Q85 A;  1ZR6 A;  2PLS A;  2UUV A;  3I99 A;  2IPI A;  1N61 C;  3AN1 A;  1DZN A;  5FXD A;  3AMZ A;  1N63 C;  2GQU A;  5AE1 A;  4PVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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