3W8WA

The crystal structure of encm
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
460
structure length
460
Chain Sequence
QFPQLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Putative FAD-dependent oxygenase EncM
publication title Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
pubmed doi rcsb
source organism Streptomyces maritimus
total genus 138
structure length 460
sequence length 460
chains with identical sequence B
ec nomenclature ec 1.13.12.-:
pdb deposition date 2013-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3w8wA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3w8wA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3w8wA03
1FFVC 3FWAA 3NVWB 1VDVA 4OALA 3FW9A 4PWCA 1AHZA 5L6FA 1DIIA 3S1EA 4BC7A 2VFUA 4PVJA 2W3RA 2OAIA 5FXFA 3RJAA 5AE3A 1W1MA 2Q4WA 3W8WA 2GQTA 2QPMA 3S1DA 2P4PA 1WYGA 3HRDC 1W1QA 4PVHA 2PLSA 2BVHA 2I0KA 2MBRA 3D2JA 1DZNA 3PM9A 4HG0A 1RM6B 1DIQA 4PYTA 5AE1A 2BVGA 2W55A 1AHUA 3SR6B 1UXYA 4ZOHB 3GSYA 3NS1B 4XLOA 3AMZA 1T3QC 5ADZA 1MBTA 3TX1A 1VAOA 2Y3RA 4BBYA 1N60C 1N62C 1W1RA 2Q85A 1E8GA 1HSKA 4UD8A 4BCAA 1MBBA 4JAYA 5D79A 2Y08A 3ETRB 1N63C 4PVEA 5HHZA 1WVEA 1F0XA 5I1VA 2Y3SA 3NVVB 1N5WC 3NVYB 1QLTA 2VFVA 1WVFA 3FW8A 4ML8A 1AHVA 2NQWA 3FW7A 1N61C 3AM9A 3EUB3 3TSJA 3DQ0A 5K8EA 4PZFA 3KJMA 2VAOA 4MLAA 1QLUA 5L6GA 4EC3A 3W8ZA 2VFRA 1E8FA 2PLIA 3TSHA 3I99A 3D2HA 3DEDA 5AWVA 5HMRA 1SB3B 3S1FA 5FXPA 3RJ8A 2VFTA 2P13A 3B9JB 1N5XA 3NRZB 1ZR6A 1FO4A 5HQXA 2Y4GA 5FXEA 1ZXIC 2R2ZA 2E3TA 2W3SA 2R8DA 3VTEA 3S1CA 5I1WA 5G5GB 4BC9A 4O95A 2EXRA 2IPIA 1E0YA 2O3GA 1I19A 5AE2A 2VFSA 2QKNA 2WDWA 3POPA 2AXRA 3JS8A 3W8XA 4DNSA 1FFUC 3C0PA 2YVSA 1V97A 2P3HA 3LLBA 3LAEA 3HSUA 3D2DA 2RK5A 4PVKA 4PWBA 5G5HB 1JROA 1FIQB 1W1OA 1W1LA 1W1KA 3BW7A 3NVZB 1JRPA 3PQBA 1W1JA 2GQUA 5FXDA 2W54A 2BVFA 4JB1A 1E8HA 1W1SA 3AN1A
chains in the Genus database with same CATH superfamily
1FFVC 3FWAA 3NVWB 1VDVA 4OALA 3FW9A 4PWCA 1AHZA 5L6FA 1DIIA 3S1EA 4BC7A 2UUUA 2VFUA 4PVJA 2W3RA 2OAIA 5FXFA 3RJAA 5AE3A 1W1MA 2Q4WA 3W8WA 2GQTA 2QPMA 3S1DA 2P4PA 1WYGA 3HRDC 1W1QA 4PVHA 2PLSA 2BVHA 3EJDB 2I0KA 2MBRA 3D2JA 1DZNA 3PM9A 4HG0A 1RM6B 1DIQA 4PYTA 5AE1A 2BVGA 2W55A 1AHUA 3SR6B 1UXYA 4ZOHB 3GSYA 3NS1B 4XLOA 3AMZA 1T3QC 5ADZA 1MBTA 3TX1A 1VAOA 2Y3RA 4BBYA 1N60C 1N62C 1W1RA 2Q85A 1E8GA 1HSKA 4UD8A 4BCAA 1MBBA 4JAYA 5D79A 2Y08A 3ETRB 1N63C 4PVEA 5HHZA 1WVEA 1F0XA 5I1VA 2Y3SA 3NVVB 1N5WC 3NVYB 1QLTA 2VFVA 1WVFA 3FW8A 4ML8A 1AHVA 2NQWA 3FW7A 1N61C 3AM9A 3EUB3 3TSJA 3DQ0A 5K8EA 4PZFA 3KJMA 2VAOA 4MLAA 1QLUA 5L6GA 3EJEB 4EC3A 3W8ZA 2VFRA 1E8FA 2PLIA 3TSHA 3I99A 3D2HA 3DEDA 5AWVA 5HMRA 1SB3B 3S1FA 5FXPA 3RJ8A 2VFTA 3EJBB 2P13A 3B9JB 1N5XA 3NRZB 1ZR6A 1FO4A 5HQXA 2UUVA 2Y4GA 5FXEA 1ZXIC 2R2ZA 2E3TA 2W3SA 2R8DA 3VTEA 3S1CA 5I1WA 5G5GB 4BC9A 4O95A 2EXRA 2IPIA 1E0YA 2O3GA 1I19A 5AE2A 2VFSA 2QKNA 2WDWA 3POPA 2AXRA 3JS8A 3W8XA 4DNSA 1FFUC 3C0PA 2YVSA 1V97A 2P3HA 3LLBA 3LAEA 3HSUA 3D2DA 2RK5A 4PVKA 4PWBA 5G5HB 1JROA 1FIQB 1W1OA 1W1LA 1W1KA 3BW7A 3NVZB 1JRPA 3PQBA 1W1JA 2GQUA 5FXDA 2W54A 2BVFA 4JB1A 1E8HA 1W1SA 3AN1A
chains in the Genus database with same CATH topology
1FFVC 3FWAA 3NVWB 1VDVA 4OALA 3FW9A 4PWCA 1AHZA 5L6FA 1DIIA 3S1EA 4BC7A 2UUUA 2VFUA 4PVJA 2W3RA 2OAIA 5FXFA 3RJAA 5AE3A 1W1MA 2Q4WA 3W8WA 2GQTA 2QPMA 3S1DA 2P4PA 1WYGA 3HRDC 1W1QA 4PVHA 2PLSA 2BVHA 2I0KA 2MBRA 3D2JA 1DZNA 3PM9A 4HG0A 1RM6B 1DIQA 4PYTA 5AE1A 2BVGA 2W55A 1AHUA 3SR6B 1UXYA 4ZOHB 3GSYA 3NS1B 4XLOA 3AMZA 1T3QC 5ADZA 1MBTA 3TX1A 1VAOA 2Y3RA 4BBYA 1N60C 1N62C 1W1RA 2Q85A 1E8GA 1HSKA 4UD8A 4BCAA 1MBBA 4JAYA 5D79A 2Y08A 3ETRB 1N63C 4PVEA 5HHZA 1WVEA 1F0XA 5I1VA 2Y3SA 3NVVB 1N5WC 3NVYB 1QLTA 2VFVA 1WVFA 3FW8A 4ML8A 1AHVA 2NQWA 3FW7A 1N61C 3AM9A 3EUB3 3TSJA 3DQ0A 5K8EA 4PZFA 3KJMA 2VAOA 4MLAA 1QLUA 5L6GA 4EC3A 3W8ZA 2VFRA 1E8FA 2PLIA 3TSHA 3I99A 3D2HA 3DEDA 5AWVA 5HMRA 1SB3B 3S1FA 5FXPA 3RJ8A 2VFTA 2P13A 3B9JB 1N5XA 3NRZB 1ZR6A 1FO4A 5HQXA 2UUVA 2Y4GA 5FXEA 1ZXIC 2R2ZA 2E3TA 2W3SA 2R8DA 3VTEA 3S1CA 5I1WA 5G5GB 4BC9A 4O95A 2EXRA 2IPIA 1E0YA 2O3GA 1I19A 5AE2A 2VFSA 2QKNA 2WDWA 3POPA 2AXRA 3JS8A 3W8XA 4DNSA 1FFUC 3C0PA 2YVSA 1V97A 2P3HA 3LLBA 3LAEA 3HSUA 3D2DA 2RK5A 4PVKA 4PWBA 5G5HB 1JROA 1FIQB 1W1OA 1W1LA 1W1KA 3BW7A 3NVZB 1JRPA 3PQBA 1W1JA 2GQUA 5FXDA 2W54A 2BVFA 4JB1A 1E8HA 1W1SA 3AN1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FFV C;  3FWA A;  3NVW B;  1VDV A;  4OAL A;  3FW9 A;  4PWC A;  1AHZ A;  5L6F A;  1DII A;  3S1E A;  4BC7 A;  2VFU A;  4PVJ A;  2W3R A;  2OAI A;  5FXF A;  3RJA A;  5AE3 A;  1W1M A;  2Q4W A;  3W8W A;  2GQT A;  2QPM A;  3S1D A;  2P4P A;  1WYG A;  3HRD C;  1W1Q A;  4PVH A;  2PLS A;  2BVH A;  2I0K A;  2MBR A;  3D2J A;  1DZN A;  3PM9 A;  4HG0 A;  1RM6 B;  1DIQ A;  4PYT A;  5AE1 A;  2BVG A;  2W55 A;  1AHU A;  3SR6 B;  1UXY A;  4ZOH B;  3GSY A;  3NS1 B;  4XLO A;  3AMZ A;  1T3Q C;  5ADZ A;  1MBT A;  3TX1 A;  1VAO A;  2Y3R A;  4BBY A;  1N60 C;  1N62 C;  1W1R A;  2Q85 A;  1E8G A;  1HSK A;  4UD8 A;  4BCA A;  1MBB A;  4JAY A;  5D79 A;  2Y08 A;  3ETR B;  1N63 C;  4PVE A;  5HHZ A;  1WVE A;  1F0X A;  5I1V A;  2Y3S A;  3NVV B;  1N5W C;  3NVY B;  1QLT A;  2VFV A;  1WVF A;  3FW8 A;  4ML8 A;  1AHV A;  2NQW A;  3FW7 A;  1N61 C;  3AM9 A;  3EUB 3;  3TSJ A;  3DQ0 A;  5K8E A;  4PZF A;  3KJM A;  2VAO A;  4MLA A;  1QLU A;  5L6G A;  4EC3 A;  3W8Z A;  2VFR A;  1E8F A;  2PLI A;  3TSH A;  3I99 A;  3D2H A;  3DED A;  5AWV A;  5HMR A;  1SB3 B;  3S1F A;  5FXP A;  3RJ8 A;  2VFT A;  2P13 A;  3B9J B;  1N5X A;  3NRZ B;  1ZR6 A;  1FO4 A;  5HQX A;  2Y4G A;  5FXE A;  1ZXI C;  2R2Z A;  2E3T A;  2W3S A;  2R8D A;  3VTE A;  3S1C A;  5I1W A;  5G5G B;  4BC9 A;  4O95 A;  2EXR A;  2IPI A;  1E0Y A;  2O3G A;  1I19 A;  5AE2 A;  2VFS A;  2QKN A;  2WDW A;  3POP A;  2AXR A;  3JS8 A;  3W8X A;  4DNS A;  1FFU C;  3C0P A;  2YVS A;  1V97 A;  2P3H A;  3LLB A;  3LAE A;  3HSU A;  3D2D A;  2RK5 A;  4PVK A;  4PWB A;  5G5H B;  1JRO A;  1FIQ B;  1W1O A;  1W1L A;  1W1K A;  3BW7 A;  3NVZ B;  1JRP A;  3PQB A;  1W1J A;  2GQU A;  5FXD A;  2W54 A;  2BVF A;  4JB1 A;  1E8H A;  1W1S A;  3AN1 A; 
#chains in the Genus database with same CATH topology
 1FFV C;  3FWA A;  3NVW B;  1VDV A;  4OAL A;  3FW9 A;  4PWC A;  1AHZ A;  5L6F A;  1DII A;  3S1E A;  4BC7 A;  2UUU A;  2VFU A;  4PVJ A;  2W3R A;  2OAI A;  5FXF A;  3RJA A;  5AE3 A;  1W1M A;  2Q4W A;  3W8W A;  2GQT A;  2QPM A;  3S1D A;  2P4P A;  1WYG A;  3HRD C;  1W1Q A;  4PVH A;  2PLS A;  2BVH A;  3EJD B;  2I0K A;  2MBR A;  3D2J A;  1DZN A;  3PM9 A;  4HG0 A;  1RM6 B;  1DIQ A;  4PYT A;  5AE1 A;  2BVG A;  2W55 A;  1AHU A;  3SR6 B;  1UXY A;  4ZOH B;  3GSY A;  3NS1 B;  4XLO A;  3AMZ A;  1T3Q C;  5ADZ A;  1MBT A;  3TX1 A;  1VAO A;  2Y3R A;  4BBY A;  1N60 C;  1N62 C;  1W1R A;  2Q85 A;  1E8G A;  1HSK A;  4UD8 A;  4BCA A;  1MBB A;  4JAY A;  5D79 A;  2Y08 A;  3ETR B;  1N63 C;  4PVE A;  5HHZ A;  1WVE A;  1F0X A;  5I1V A;  2Y3S A;  3NVV B;  1N5W C;  3NVY B;  1QLT A;  2VFV A;  1WVF A;  3FW8 A;  4ML8 A;  1AHV A;  2NQW A;  3FW7 A;  1N61 C;  3AM9 A;  3EUB 3;  3TSJ A;  3DQ0 A;  5K8E A;  4PZF A;  3KJM A;  2VAO A;  4MLA A;  1QLU A;  5L6G A;  3EJE B;  4EC3 A;  3W8Z A;  2VFR A;  1E8F A;  2PLI A;  3TSH A;  3I99 A;  3D2H A;  3DED A;  5AWV A;  5HMR A;  1SB3 B;  3S1F A;  5FXP A;  3RJ8 A;  2VFT A;  3EJB B;  2P13 A;  3B9J B;  1N5X A;  3NRZ B;  1ZR6 A;  1FO4 A;  5HQX A;  2UUV A;  2Y4G A;  5FXE A;  1ZXI C;  2R2Z A;  2E3T A;  2W3S A;  2R8D A;  3VTE A;  3S1C A;  5I1W A;  5G5G B;  4BC9 A;  4O95 A;  2EXR A;  2IPI A;  1E0Y A;  2O3G A;  1I19 A;  5AE2 A;  2VFS A;  2QKN A;  2WDW A;  3POP A;  2AXR A;  3JS8 A;  3W8X A;  4DNS A;  1FFU C;  3C0P A;  2YVS A;  1V97 A;  2P3H A;  3LLB A;  3LAE A;  3HSU A;  3D2D A;  2RK5 A;  4PVK A;  4PWB A;  5G5H B;  1JRO A;  1FIQ B;  1W1O A;  1W1L A;  1W1K A;  3BW7 A;  3NVZ B;  1JRP A;  3PQB A;  1W1J A;  2GQU A;  5FXD A;  2W54 A;  2BVF A;  4JB1 A;  1E8H A;  1W1S A;  3AN1 A; 
#chains in the Genus database with same CATH homology
 1FFV C;  3FWA A;  3NVW B;  1VDV A;  4OAL A;  3FW9 A;  4PWC A;  1AHZ A;  5L6F A;  1DII A;  3S1E A;  4BC7 A;  2UUU A;  2VFU A;  4PVJ A;  2W3R A;  2OAI A;  5FXF A;  3RJA A;  5AE3 A;  1W1M A;  2Q4W A;  3W8W A;  2GQT A;  2QPM A;  3S1D A;  2P4P A;  1WYG A;  3HRD C;  1W1Q A;  4PVH A;  2PLS A;  2BVH A;  2I0K A;  2MBR A;  3D2J A;  1DZN A;  3PM9 A;  4HG0 A;  1RM6 B;  1DIQ A;  4PYT A;  5AE1 A;  2BVG A;  2W55 A;  1AHU A;  3SR6 B;  1UXY A;  4ZOH B;  3GSY A;  3NS1 B;  4XLO A;  3AMZ A;  1T3Q C;  5ADZ A;  1MBT A;  3TX1 A;  1VAO A;  2Y3R A;  4BBY A;  1N60 C;  1N62 C;  1W1R A;  2Q85 A;  1E8G A;  1HSK A;  4UD8 A;  4BCA A;  1MBB A;  4JAY A;  5D79 A;  2Y08 A;  3ETR B;  1N63 C;  4PVE A;  5HHZ A;  1WVE A;  1F0X A;  5I1V A;  2Y3S A;  3NVV B;  1N5W C;  3NVY B;  1QLT A;  2VFV A;  1WVF A;  3FW8 A;  4ML8 A;  1AHV A;  2NQW A;  3FW7 A;  1N61 C;  3AM9 A;  3EUB 3;  3TSJ A;  3DQ0 A;  5K8E A;  4PZF A;  3KJM A;  2VAO A;  4MLA A;  1QLU A;  5L6G A;  4EC3 A;  3W8Z A;  2VFR A;  1E8F A;  2PLI A;  3TSH A;  3I99 A;  3D2H A;  3DED A;  5AWV A;  5HMR A;  1SB3 B;  3S1F A;  5FXP A;  3RJ8 A;  2VFT A;  2P13 A;  3B9J B;  1N5X A;  3NRZ B;  1ZR6 A;  1FO4 A;  5HQX A;  2UUV A;  2Y4G A;  5FXE A;  1ZXI C;  2R2Z A;  2E3T A;  2W3S A;  2R8D A;  3VTE A;  3S1C A;  5I1W A;  5G5G B;  4BC9 A;  4O95 A;  2EXR A;  2IPI A;  1E0Y A;  2O3G A;  1I19 A;  5AE2 A;  2VFS A;  2QKN A;  2WDW A;  3POP A;  2AXR A;  3JS8 A;  3W8X A;  4DNS A;  1FFU C;  3C0P A;  2YVS A;  1V97 A;  2P3H A;  3LLB A;  3LAE A;  3HSU A;  3D2D A;  2RK5 A;  4PVK A;  4PWB A;  5G5H B;  1JRO A;  1FIQ B;  1W1O A;  1W1L A;  1W1K A;  3BW7 A;  3NVZ B;  1JRP A;  3PQB A;  1W1J A;  2GQU A;  5FXD A;  2W54 A;  2BVF A;  4JB1 A;  1E8H A;  1W1S A;  3AN1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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