5L6GA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6gA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6gA02
5L6GA 5L6FA 3W8ZA 2WDWA 5AWVA 3RJ8A 2BVGA 4PZFA 2Y08A 4EC3A 2BVHA 3TSJA 3W8XA 3PQBA 5D79A 3D2JA 5I1VA 3VTEA 5I1WA 2UUUA 2AXRA 4UD8A 2Y3RA 3POPA 2UUVA 3FW7A 4PVHA 4PVJA 3TSHA 4DNSA 3RJAA 4PWCA 3FWAA 3D2HA 4XLOA 3W8WA 3FW9A 3HSUA 4PWBA 2Y4GA 5K8EA 3D2DA 4PVEA 4PVKA 2Y3SA 1ZR6A 2IPIA 2BVFA 3GSYA 3FW8A
chains in the Genus database with same CATH superfamily
5AE3A 1QLTA 2GQUA 4ZOHB 1W1MA 1N61C 5AWVA 1VAOA 4PZFA 1WVEA 1DZNA 3TX1A 4EC3A 5FXPA 3JS8A 1N60C 1HSKA 1V97A 1W1OA 1QLUA 2AXRA 1JRPA 1JROA 1I19A 1AHZA 2Q4WA 2YVSA 1E0YA 4PVJA 1N5XA 3NVYB 3B9JB 3S1FA 2VFVA 3BW7A 1W1LA 4MLAA 3NVZB 3D2HA 4XLOA 3NVVB 2GQTA 2O3GA 3AM9A 1N5WC 2Y4GA 2E3TA 4PVEA 1E8FA 2Y3SA 5AE2A 5HMRA 3S1DA 3PM9A 4PVKA 2MBRA 2P3HA 2VAOA 1DIIA 1UXYA 3S1EA 3PQBA 5FXDA 3D2JA 1N63C 3VTEA 1DIQA 2R2ZA 3KJMA 1SB3B 2VFUA 3DEDA 3HRDC 4HG0A 3POPA 2UUVA 4PYTA 4DNSA 2W3SA 3RJAA 1WVFA 2VFSA 4PWCA 2W54A 2EXRA 3FW9A 3HSUA 1FFUC 3D2DA 3AN1A 1W1KA 3SR6B 2BVFA 2IPIA 3NVWB 3W8ZA 3RJ8A 2Q85A 1FO4A 3EUB3 4JAYA 3TSJA 3I99A 5I1VA 5I1WA 5FXEA 2UUUA 3LAEA 5AE1A 1E8GA 2R8DA 4ML8A 2P13A 4JB1A 3TSHA 1W1SA 3AMZA 2QKNA 4BC9A 2W3RA 4BC7A 4OALA 1AHVA 5ADZA 5G5HB 5K8EA 3C0PA 1MBBA 1ZXIC 3ETRB 1ZR6A 1RM6B 2NQWA 3FW8A 2QPMA 5L6FA 5L6GA 2WDWA 2PLIA 2BVGA 3DQ0A 2RK5A 2Y08A 2BVHA 1MBTA 2OAIA 2VFRA 5D79A 1AHUA 3W8XA 3NRZB 4BCAA 2PLSA 4O95A 4UD8A 1W1QA 2Y3RA 1T3QC 3FW7A 4PVHA 1N62C 1WYGA 4BBYA 1VDVA 3S1CA 1FFVC 3NS1B 2VFTA 3LLBA 1W1RA 2W55A 3FWAA 3W8WA 5G5GB 5HHZA 2P4PA 1F0XA 5FXFA 1FIQB 1E8HA 4PWBA 1W1JA 2I0KA 3GSYA 5HQXA
chains in the Genus database with same CATH topology
5AE3A 1QLTA 2GQUA 4ZOHB 1W1MA 1N61C 5AWVA 1VAOA 4PZFA 1WVEA 1DZNA 3TX1A 4EC3A 5FXPA 3JS8A 1N60C 1HSKA 1V97A 1W1OA 1QLUA 2AXRA 1JRPA 1JROA 1I19A 1AHZA 2Q4WA 2YVSA 1E0YA 4PVJA 1N5XA 3NVYB 3B9JB 3S1FA 2VFVA 3BW7A 1W1LA 4MLAA 3NVZB 3D2HA 4XLOA 3NVVB 2GQTA 2O3GA 3AM9A 1N5WC 2Y4GA 2E3TA 4PVEA 1E8FA 2Y3SA 5AE2A 5HMRA 3S1DA 3PM9A 4PVKA 2MBRA 2P3HA 2VAOA 1DIIA 1UXYA 3S1EA 3PQBA 5FXDA 3D2JA 1N63C 3VTEA 1DIQA 2R2ZA 3KJMA 1SB3B 2VFUA 3DEDA 3HRDC 4HG0A 3POPA 2UUVA 4PYTA 4DNSA 2W3SA 3RJAA 1WVFA 2VFSA 4PWCA 2W54A 2EXRA 3FW9A 3HSUA 1FFUC 3D2DA 3AN1A 1W1KA 3SR6B 2BVFA 2IPIA 3NVWB 3W8ZA 3RJ8A 2Q85A 1FO4A 3EUB3 4JAYA 3TSJA 3I99A 5I1VA 5I1WA 5FXEA 2UUUA 3LAEA 5AE1A 1E8GA 2R8DA 4ML8A 2P13A 4JB1A 3TSHA 1W1SA 3AMZA 2QKNA 4BC9A 2W3RA 4BC7A 4OALA 1AHVA 5ADZA 5G5HB 5K8EA 3C0PA 1MBBA 1ZXIC 3ETRB 1ZR6A 1RM6B 2NQWA 3FW8A 2QPMA 5L6FA 5L6GA 2WDWA 2PLIA 2BVGA 3DQ0A 2RK5A 2Y08A 2BVHA 1MBTA 2OAIA 2VFRA 5D79A 1AHUA 3W8XA 3NRZB 4BCAA 2PLSA 4O95A 4UD8A 1W1QA 2Y3RA 1T3QC 3FW7A 4PVHA 1N62C 1WYGA 4BBYA 1VDVA 3S1CA 1FFVC 3NS1B 2VFTA 3LLBA 1W1RA 2W55A 3FWAA 3W8WA 5G5GB 5HHZA 2P4PA 1F0XA 5FXFA 1FIQB 1E8HA 4PWBA 1W1JA 2I0KA 3GSYA 5HQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6G A;  5L6F A;  3W8Z A;  2WDW A;  5AWV A;  3RJ8 A;  2BVG A;  4PZF A;  2Y08 A;  4EC3 A;  2BVH A;  3TSJ A;  3W8X A;  3PQB A;  5D79 A;  3D2J A;  5I1V A;  3VTE A;  5I1W A;  2UUU A;  2AXR A;  4UD8 A;  2Y3R A;  3POP A;  2UUV A;  3FW7 A;  4PVH A;  4PVJ A;  3TSH A;  4DNS A;  3RJA A;  4PWC A;  3FWA A;  3D2H A;  4XLO A;  3W8W A;  3FW9 A;  3HSU A;  4PWB A;  2Y4G A;  5K8E A;  3D2D A;  4PVE A;  4PVK A;  2Y3S A;  1ZR6 A;  2IPI A;  2BVF A;  3GSY A;  3FW8 A; 
#chains in the Genus database with same CATH topology
 5AE3 A;  1QLT A;  2GQU A;  4ZOH B;  1W1M A;  1N61 C;  5AWV A;  1VAO A;  4PZF A;  1WVE A;  1DZN A;  3TX1 A;  4EC3 A;  5FXP A;  3JS8 A;  1N60 C;  1HSK A;  1V97 A;  1W1O A;  1QLU A;  2AXR A;  1JRP A;  1JRO A;  1I19 A;  1AHZ A;  2Q4W A;  2YVS A;  1E0Y A;  4PVJ A;  1N5X A;  3NVY B;  3B9J B;  3S1F A;  2VFV A;  3BW7 A;  1W1L A;  4MLA A;  3NVZ B;  3D2H A;  4XLO A;  3NVV B;  2GQT A;  2O3G A;  3AM9 A;  1N5W C;  2Y4G A;  2E3T A;  4PVE A;  1E8F A;  2Y3S A;  5AE2 A;  5HMR A;  3S1D A;  3PM9 A;  4PVK A;  2MBR A;  2P3H A;  2VAO A;  1DII A;  1UXY A;  3S1E A;  3PQB A;  5FXD A;  3D2J A;  1N63 C;  3VTE A;  1DIQ A;  2R2Z A;  3KJM A;  1SB3 B;  2VFU A;  3DED A;  3HRD C;  4HG0 A;  3POP A;  2UUV A;  4PYT A;  4DNS A;  2W3S A;  3RJA A;  1WVF A;  2VFS A;  4PWC A;  2W54 A;  2EXR A;  3FW9 A;  3HSU A;  1FFU C;  3D2D A;  3AN1 A;  1W1K A;  3SR6 B;  2BVF A;  2IPI A;  3NVW B;  3W8Z A;  3RJ8 A;  2Q85 A;  1FO4 A;  3EUB 3;  4JAY A;  3TSJ A;  3I99 A;  5I1V A;  5I1W A;  5FXE A;  2UUU A;  3LAE A;  5AE1 A;  1E8G A;  2R8D A;  4ML8 A;  2P13 A;  4JB1 A;  3TSH A;  1W1S A;  3AMZ A;  2QKN A;  4BC9 A;  2W3R A;  4BC7 A;  4OAL A;  1AHV A;  5ADZ A;  5G5H B;  5K8E A;  3C0P A;  1MBB A;  1ZXI C;  3ETR B;  1ZR6 A;  1RM6 B;  2NQW A;  3FW8 A;  2QPM A;  5L6F A;  5L6G A;  2WDW A;  2PLI A;  2BVG A;  3DQ0 A;  2RK5 A;  2Y08 A;  2BVH A;  1MBT A;  2OAI A;  2VFR A;  5D79 A;  1AHU A;  3W8X A;  3NRZ B;  4BCA A;  2PLS A;  4O95 A;  4UD8 A;  1W1Q A;  2Y3R A;  1T3Q C;  3FW7 A;  4PVH A;  1N62 C;  1WYG A;  4BBY A;  1VDV A;  3S1C A;  1FFV C;  3NS1 B;  2VFT A;  3LLB A;  1W1R A;  2W55 A;  3FWA A;  3W8W A;  5G5G B;  5HHZ A;  2P4P A;  1F0X A;  5FXF A;  1FIQ B;  1E8H A;  4PWB A;  1W1J A;  2I0K A;  3GSY A;  5HQX A; 
#chains in the Genus database with same CATH homology
 5AE3 A;  1QLT A;  2GQU A;  4ZOH B;  1W1M A;  1N61 C;  5AWV A;  1VAO A;  4PZF A;  1WVE A;  1DZN A;  3TX1 A;  4EC3 A;  5FXP A;  3JS8 A;  1N60 C;  1HSK A;  1V97 A;  1W1O A;  1QLU A;  2AXR A;  1JRP A;  1JRO A;  1I19 A;  1AHZ A;  2Q4W A;  2YVS A;  1E0Y A;  4PVJ A;  1N5X A;  3NVY B;  3B9J B;  3S1F A;  2VFV A;  3BW7 A;  1W1L A;  4MLA A;  3NVZ B;  3D2H A;  4XLO A;  3NVV B;  2GQT A;  2O3G A;  3AM9 A;  1N5W C;  2Y4G A;  2E3T A;  4PVE A;  1E8F A;  2Y3S A;  5AE2 A;  5HMR A;  3S1D A;  3PM9 A;  4PVK A;  2MBR A;  2P3H A;  2VAO A;  1DII A;  1UXY A;  3S1E A;  3PQB A;  5FXD A;  3D2J A;  1N63 C;  3VTE A;  1DIQ A;  2R2Z A;  3KJM A;  1SB3 B;  2VFU A;  3DED A;  3HRD C;  4HG0 A;  3POP A;  2UUV A;  4PYT A;  4DNS A;  2W3S A;  3RJA A;  1WVF A;  2VFS A;  4PWC A;  2W54 A;  2EXR A;  3FW9 A;  3HSU A;  1FFU C;  3D2D A;  3AN1 A;  1W1K A;  3SR6 B;  2BVF A;  2IPI A;  3NVW B;  3W8Z A;  3RJ8 A;  2Q85 A;  1FO4 A;  3EUB 3;  4JAY A;  3TSJ A;  3I99 A;  5I1V A;  5I1W A;  5FXE A;  2UUU A;  3LAE A;  5AE1 A;  1E8G A;  2R8D A;  4ML8 A;  2P13 A;  4JB1 A;  3TSH A;  1W1S A;  3AMZ A;  2QKN A;  4BC9 A;  2W3R A;  4BC7 A;  4OAL A;  1AHV A;  5ADZ A;  5G5H B;  5K8E A;  3C0P A;  1MBB A;  1ZXI C;  3ETR B;  1ZR6 A;  1RM6 B;  2NQW A;  3FW8 A;  2QPM A;  5L6F A;  5L6G A;  2WDW A;  2PLI A;  2BVG A;  3DQ0 A;  2RK5 A;  2Y08 A;  2BVH A;  1MBT A;  2OAI A;  2VFR A;  5D79 A;  1AHU A;  3W8X A;  3NRZ B;  4BCA A;  2PLS A;  4O95 A;  4UD8 A;  1W1Q A;  2Y3R A;  1T3Q C;  3FW7 A;  4PVH A;  1N62 C;  1WYG A;  4BBY A;  1VDV A;  3S1C A;  1FFV C;  3NS1 B;  2VFT A;  3LLB A;  1W1R A;  2W55 A;  3FWA A;  3W8W A;  5G5G B;  5HHZ A;  2P4P A;  1F0X A;  5FXF A;  1FIQ B;  1E8H A;  4PWB A;  1W1J A;  2I0K A;  3GSY A;  5HQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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