5L6GA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords FAD linked oxidase-like protein
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6gA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6gA02
2Y4GA 3FW8A 2BVGA 4PVJA 2Y08A 4EC3A 3PQBA 2AXRA 3TSHA 3W8XA 2Y3SA 3W8ZA 2BVFA 3FWAA 4UD8A 3RJAA 4XLOA 1ZR6A 2IPIA 5L6FA 3FW7A 5L6GA 2UUVA 4PWBA 2BVHA 5I1WA 4PWCA 3TSJA 3RJ8A 5K8EA 5D79A 4DNSA 3FW9A 4PVKA 2UUUA 3GSYA 4PVEA 5I1VA 3VTEA 4PZFA 2Y3RA 4PVHA 2WDWA 3D2JA 3W8WA 3D2HA 5AWVA 3POPA 3D2DA 3HSUA
chains in the Genus database with same CATH superfamily
2Q85A 4JB1A 4PVJA 3HRDC 2NQWA 5HQXA 1V97A 2Y3SA 3I99A 2OAIA 3W8ZA 2BVFA 5FXEA 3RJAA 1WVEA 2IPIA 3FW7A 5FXFA 1VAOA 1QLUA 2UUVA 2W3SA 2BVHA 3TSJA 2PLSA 4ML8A 1FFUC 3DEDA 4DNSA 5AE2A 3GSYA 2VFUA 1AHZA 2P4PA 1E8FA 5HHZA 3D2HA 1W1OA 4BC9A 3HSUA 4BBYA 1N62C 2Y4GA 1FFVC 3NVVB 4OALA 1W1RA 3FW8A 2BVGA 2VAOA 3BW7A 1N63C 2Y08A 3S1EA 3NVYB 4BCAA 1JRPA 1WYGA 4EC3A 3PQBA 5AE1A 3S1CA 2YVSA 4UD8A 3AM9A 2E3TA 2Q4WA 5G5GB 3AMZA 1W1KA 1VDVA 1MBBA 3AN1A 2R8DA 3RJ8A 5D79A 4PVEA 3NS1B 4MLAA 2VFVA 1DIIA 3KJMA 4PZFA 2Y3RA 4BC7A 3SR6B 3W8WA 1HSKA 1UXYA 3D2DA 3NRZB 3POPA 3JS8A 1JROA 4ZOHB 3LLBA 3B9JB 2R2ZA 1FIQB 2QKNA 2W55A 4O95A 1AHUA 5AE3A 2AXRA 3PM9A 3W8XA 2I0KA 1E0YA 4XLOA 3TX1A 2GQUA 5L6FA 5HMRA 2PLIA 1W1QA 1W1MA 4JAYA 1MBTA 1W1JA 4PWBA 4PWCA 1N5XA 3S1DA 5K8EA 2GQTA 1DZNA 1W1LA 2UUUA 3VTEA 2VFTA 5I1VA 2VFSA 1SB3B 3NVZB 1F0XA 2W54A 1E8HA 1ZXIC 3EUB3 3DQ0A 2O3GA 5AWVA 1QLTA 5FXDA 1AHVA 1N61C 1N5WC 3TSHA 1DIQA 1W1SA 3NVWB 2P3HA 1RM6B 3FWAA 1N60C 1ZR6A 3ETRB 5ADZA 4PYTA 2P13A 5FXPA 5L6GA 5I1WA 1I19A 3FW9A 4HG0A 4PVKA 2W3RA 2MBRA 3C0PA 2VFRA 4PVHA 2WDWA 1T3QC 3D2JA 3S1FA 3LAEA 2RK5A 5G5HB 1WVFA 1E8GA 2EXRA 2QPMA 1FO4A
chains in the Genus database with same CATH topology
2Q85A 4JB1A 4PVJA 3HRDC 2NQWA 5HQXA 1V97A 2Y3SA 3I99A 2OAIA 3W8ZA 2BVFA 5FXEA 3RJAA 1WVEA 2IPIA 3FW7A 5FXFA 1VAOA 1QLUA 2UUVA 2W3SA 2BVHA 3TSJA 2PLSA 4ML8A 1FFUC 3DEDA 4DNSA 5AE2A 3GSYA 2VFUA 1AHZA 2P4PA 1E8FA 5HHZA 3D2HA 1W1OA 4BC9A 3HSUA 4BBYA 1N62C 2Y4GA 1FFVC 3NVVB 4OALA 1W1RA 3FW8A 2BVGA 2VAOA 3BW7A 1N63C 2Y08A 3S1EA 3NVYB 4BCAA 1JRPA 1WYGA 4EC3A 3PQBA 5AE1A 3S1CA 2YVSA 4UD8A 3AM9A 2E3TA 2Q4WA 5G5GB 3AMZA 1W1KA 1VDVA 1MBBA 3AN1A 2R8DA 3RJ8A 5D79A 4PVEA 3NS1B 4MLAA 2VFVA 1DIIA 3KJMA 4PZFA 2Y3RA 4BC7A 3SR6B 3W8WA 1HSKA 1UXYA 3D2DA 3NRZB 3POPA 3JS8A 1JROA 4ZOHB 3LLBA 3B9JB 2R2ZA 1FIQB 2QKNA 2W55A 4O95A 1AHUA 5AE3A 2AXRA 3PM9A 3W8XA 2I0KA 1E0YA 4XLOA 3TX1A 2GQUA 5L6FA 5HMRA 2PLIA 1W1QA 1W1MA 4JAYA 1MBTA 1W1JA 4PWBA 4PWCA 1N5XA 3S1DA 5K8EA 2GQTA 1DZNA 1W1LA 2UUUA 3VTEA 2VFTA 5I1VA 2VFSA 1SB3B 3NVZB 1F0XA 2W54A 1E8HA 1ZXIC 3EUB3 3DQ0A 2O3GA 5AWVA 1QLTA 5FXDA 1AHVA 1N61C 1N5WC 3TSHA 1DIQA 1W1SA 3NVWB 2P3HA 1RM6B 3FWAA 1N60C 1ZR6A 3ETRB 5ADZA 4PYTA 2P13A 5FXPA 5L6GA 5I1WA 1I19A 3FW9A 4HG0A 4PVKA 2W3RA 2MBRA 3C0PA 2VFRA 4PVHA 2WDWA 1T3QC 3D2JA 3S1FA 3LAEA 2RK5A 5G5HB 1WVFA 1E8GA 2EXRA 2QPMA 1FO4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y4G A;  3FW8 A;  2BVG A;  4PVJ A;  2Y08 A;  4EC3 A;  3PQB A;  2AXR A;  3TSH A;  3W8X A;  2Y3S A;  3W8Z A;  2BVF A;  3FWA A;  4UD8 A;  3RJA A;  4XLO A;  1ZR6 A;  2IPI A;  5L6F A;  3FW7 A;  5L6G A;  2UUV A;  4PWB A;  2BVH A;  5I1W A;  4PWC A;  3TSJ A;  3RJ8 A;  5K8E A;  5D79 A;  4DNS A;  3FW9 A;  4PVK A;  2UUU A;  3GSY A;  4PVE A;  5I1V A;  3VTE A;  4PZF A;  2Y3R A;  4PVH A;  2WDW A;  3D2J A;  3W8W A;  3D2H A;  5AWV A;  3POP A;  3D2D A;  3HSU A; 
#chains in the Genus database with same CATH topology
 2Q85 A;  4JB1 A;  4PVJ A;  3HRD C;  2NQW A;  5HQX A;  1V97 A;  2Y3S A;  3I99 A;  2OAI A;  3W8Z A;  2BVF A;  5FXE A;  3RJA A;  1WVE A;  2IPI A;  3FW7 A;  5FXF A;  1VAO A;  1QLU A;  2UUV A;  2W3S A;  2BVH A;  3TSJ A;  2PLS A;  4ML8 A;  1FFU C;  3DED A;  4DNS A;  5AE2 A;  3GSY A;  2VFU A;  1AHZ A;  2P4P A;  1E8F A;  5HHZ A;  3D2H A;  1W1O A;  4BC9 A;  3HSU A;  4BBY A;  1N62 C;  2Y4G A;  1FFV C;  3NVV B;  4OAL A;  1W1R A;  3FW8 A;  2BVG A;  2VAO A;  3BW7 A;  1N63 C;  2Y08 A;  3S1E A;  3NVY B;  4BCA A;  1JRP A;  1WYG A;  4EC3 A;  3PQB A;  5AE1 A;  3S1C A;  2YVS A;  4UD8 A;  3AM9 A;  2E3T A;  2Q4W A;  5G5G B;  3AMZ A;  1W1K A;  1VDV A;  1MBB A;  3AN1 A;  2R8D A;  3RJ8 A;  5D79 A;  4PVE A;  3NS1 B;  4MLA A;  2VFV A;  1DII A;  3KJM A;  4PZF A;  2Y3R A;  4BC7 A;  3SR6 B;  3W8W A;  1HSK A;  1UXY A;  3D2D A;  3NRZ B;  3POP A;  3JS8 A;  1JRO A;  4ZOH B;  3LLB A;  3B9J B;  2R2Z A;  1FIQ B;  2QKN A;  2W55 A;  4O95 A;  1AHU A;  5AE3 A;  2AXR A;  3PM9 A;  3W8X A;  2I0K A;  1E0Y A;  4XLO A;  3TX1 A;  2GQU A;  5L6F A;  5HMR A;  2PLI A;  1W1Q A;  1W1M A;  4JAY A;  1MBT A;  1W1J A;  4PWB A;  4PWC A;  1N5X A;  3S1D A;  5K8E A;  2GQT A;  1DZN A;  1W1L A;  2UUU A;  3VTE A;  2VFT A;  5I1V A;  2VFS A;  1SB3 B;  3NVZ B;  1F0X A;  2W54 A;  1E8H A;  1ZXI C;  3EUB 3;  3DQ0 A;  2O3G A;  5AWV A;  1QLT A;  5FXD A;  1AHV A;  1N61 C;  1N5W C;  3TSH A;  1DIQ A;  1W1S A;  3NVW B;  2P3H A;  1RM6 B;  3FWA A;  1N60 C;  1ZR6 A;  3ETR B;  5ADZ A;  4PYT A;  2P13 A;  5FXP A;  5L6G A;  5I1W A;  1I19 A;  3FW9 A;  4HG0 A;  4PVK A;  2W3R A;  2MBR A;  3C0P A;  2VFR A;  4PVH A;  2WDW A;  1T3Q C;  3D2J A;  3S1F A;  3LAE A;  2RK5 A;  5G5H B;  1WVF A;  1E8G A;  2EXR A;  2QPM A;  1FO4 A; 
#chains in the Genus database with same CATH homology
 2Q85 A;  4JB1 A;  4PVJ A;  3HRD C;  2NQW A;  5HQX A;  1V97 A;  2Y3S A;  3I99 A;  2OAI A;  3W8Z A;  2BVF A;  5FXE A;  3RJA A;  1WVE A;  2IPI A;  3FW7 A;  5FXF A;  1VAO A;  1QLU A;  2UUV A;  2W3S A;  2BVH A;  3TSJ A;  2PLS A;  4ML8 A;  1FFU C;  3DED A;  4DNS A;  5AE2 A;  3GSY A;  2VFU A;  1AHZ A;  2P4P A;  1E8F A;  5HHZ A;  3D2H A;  1W1O A;  4BC9 A;  3HSU A;  4BBY A;  1N62 C;  2Y4G A;  1FFV C;  3NVV B;  4OAL A;  1W1R A;  3FW8 A;  2BVG A;  2VAO A;  3BW7 A;  1N63 C;  2Y08 A;  3S1E A;  3NVY B;  4BCA A;  1JRP A;  1WYG A;  4EC3 A;  3PQB A;  5AE1 A;  3S1C A;  2YVS A;  4UD8 A;  3AM9 A;  2E3T A;  2Q4W A;  5G5G B;  3AMZ A;  1W1K A;  1VDV A;  1MBB A;  3AN1 A;  2R8D A;  3RJ8 A;  5D79 A;  4PVE A;  3NS1 B;  4MLA A;  2VFV A;  1DII A;  3KJM A;  4PZF A;  2Y3R A;  4BC7 A;  3SR6 B;  3W8W A;  1HSK A;  1UXY A;  3D2D A;  3NRZ B;  3POP A;  3JS8 A;  1JRO A;  4ZOH B;  3LLB A;  3B9J B;  2R2Z A;  1FIQ B;  2QKN A;  2W55 A;  4O95 A;  1AHU A;  5AE3 A;  2AXR A;  3PM9 A;  3W8X A;  2I0K A;  1E0Y A;  4XLO A;  3TX1 A;  2GQU A;  5L6F A;  5HMR A;  2PLI A;  1W1Q A;  1W1M A;  4JAY A;  1MBT A;  1W1J A;  4PWB A;  4PWC A;  1N5X A;  3S1D A;  5K8E A;  2GQT A;  1DZN A;  1W1L A;  2UUU A;  3VTE A;  2VFT A;  5I1V A;  2VFS A;  1SB3 B;  3NVZ B;  1F0X A;  2W54 A;  1E8H A;  1ZXI C;  3EUB 3;  3DQ0 A;  2O3G A;  5AWV A;  1QLT A;  5FXD A;  1AHV A;  1N61 C;  1N5W C;  3TSH A;  1DIQ A;  1W1S A;  3NVW B;  2P3H A;  1RM6 B;  3FWA A;  1N60 C;  1ZR6 A;  3ETR B;  5ADZ A;  4PYT A;  2P13 A;  5FXP A;  5L6G A;  5I1W A;  1I19 A;  3FW9 A;  4HG0 A;  4PVK A;  2W3R A;  2MBR A;  3C0P A;  2VFR A;  4PVH A;  2WDW A;  1T3Q C;  3D2J A;  3S1F A;  3LAE A;  2RK5 A;  5G5H B;  1WVF A;  1E8G A;  2EXR A;  2QPM A;  1FO4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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