2Y08A

Structure of the substrate-free fad-dependent tirandamycin oxidase taml
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
498
structure length
498
Chain Sequence
HIDSVAPGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPGGACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRLPWLHSTRWPGIAGDGDMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRDSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords TAML
publication title Tirandamycin Biosynthesis is Mediated by Co-Dependent Oxidative Enzymes
pubmed doi rcsb
source organism Streptomyces sp. 307-9
total genus 157
structure length 498
sequence length 498
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2y08A01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2y08A02
4PVEA 1ZR6A 2Y08A 3POPA 4PWCA 5AWVA 3FW8A 3FW9A 4DNSA 3HSUA 2IPIA 3FW7A 3TSJA 2BVFA 4PZFA 4PVJA 3RJAA 3GSYA 2UUUA 4PVHA 5I1WA 2Y4GA 5I1VA 3D2JA 3W8WA 2Y3SA 3RJ8A 3PQBA 5D79A 4PWBA 2UUVA 3TSHA 2BVGA 2Y3RA 5K8EA 3D2DA 3D2HA 4EC3A 3VTEA 5L6GA 4UD8A 2BVHA 5L6FA 4XLOA 2AXRA 3W8XA 3W8ZA 4PVKA 2WDWA 3FWAA
chains in the Genus database with same CATH superfamily
1W1MA 1ZR6A 2Y08A 5FXDA 1MBTA 2VFSA 4PWCA 5HMRA 3FW8A 3FW9A 1I19A 2IPIA 4PVJA 5HQXA 1FFUC 4PVHA 2Y4GA 3RJ8A 5D79A 2RK5A 3NVZB 3PQBA 4PWBA 5ADZA 3EUB3 5G5HB 1ZXIC 2YVSA 3S1CA 2P13A 2E3TA 3B9JB 3S1FA 2Q4WA 5L6GA 1N62C 2R2ZA 2GQUA 4JB1A 5HHZA 1DIIA 1W1JA 4BC7A 1AHUA 3POPA 5AWVA 1FFVC 2OAIA 3DEDA 3HSUA 2PLSA 3FW7A 5FXFA 2BVFA 3TSJA 1W1QA 1E8FA 2W54A 2QKNA 5I1WA 3D2JA 3W8WA 1N61C 1DIQA 1QLUA 1WVEA 3JS8A 2UUVA 3TSHA 4JAYA 1SB3B 3SR6B 4BC9A 5K8EA 2Q85A 3LLBA 1FIQB 2GQTA 1AHVA 1VDVA 2VAOA 4O95A 1WVFA 1F0XA 1T3QC 3S1DA 1JROA 3NVYB 1VAOA 3W8XA 1W1LA 2MBRA 2WDWA 3HRDC 3W8ZA 1E8GA 4ML8A 2VFVA 3NRZB 2EXRA 4PVEA 2VFTA 3AN1A 1FO4A 5FXPA 1N5XA 4PVKA 2P3HA 2VFRA 1JRPA 4PZFA 4PYTA 3RJAA 1V97A 2UUUA 5AE3A 4MLAA 3LAEA 1DZNA 1E8HA 2I0KA 3NVWB 5I1VA 1W1SA 3DQ0A 2BVGA 2NQWA 2Y3RA 1HSKA 2W3RA 3KJMA 3ETRB 5FXEA 3S1EA 4BBYA 3BW7A 4UD8A 2BVHA 4XLOA 5L6FA 2AXRA 3NS1B 4HG0A 1RM6B 5AE1A 1WYGA 3FWAA 1N5WC 3PM9A 5AE2A 1AHZA 1QLTA 3I99A 3AMZA 4DNSA 5G5GB 3AM9A 3GSYA 3TX1A 1W1KA 2Y3SA 1N63C 4ZOHB 2W3SA 2P4PA 2W55A 1W1RA 2O3GA 3C0PA 1UXYA 3D2DA 3D2HA 4EC3A 2R8DA 1MBBA 1E0YA 4OALA 3VTEA 3NVVB 2PLIA 1N60C 2VFUA 4BCAA 1W1OA 2QPMA
chains in the Genus database with same CATH topology
1W1MA 1ZR6A 2Y08A 5FXDA 1MBTA 2VFSA 4PWCA 5HMRA 3FW8A 3FW9A 1I19A 2IPIA 4PVJA 5HQXA 1FFUC 4PVHA 2Y4GA 3RJ8A 5D79A 2RK5A 3NVZB 3PQBA 4PWBA 5ADZA 3EUB3 5G5HB 1ZXIC 2YVSA 3S1CA 2P13A 2E3TA 3B9JB 3S1FA 2Q4WA 5L6GA 1N62C 2R2ZA 2GQUA 4JB1A 5HHZA 1DIIA 1W1JA 4BC7A 1AHUA 3POPA 5AWVA 1FFVC 2OAIA 3DEDA 3HSUA 2PLSA 3FW7A 5FXFA 2BVFA 3TSJA 1W1QA 1E8FA 2W54A 2QKNA 5I1WA 3D2JA 3W8WA 1N61C 1DIQA 1QLUA 1WVEA 3JS8A 2UUVA 3TSHA 4JAYA 1SB3B 3SR6B 4BC9A 5K8EA 2Q85A 3LLBA 1FIQB 2GQTA 1AHVA 1VDVA 2VAOA 4O95A 1WVFA 1F0XA 1T3QC 3S1DA 1JROA 3NVYB 1VAOA 3W8XA 1W1LA 2MBRA 2WDWA 3HRDC 3W8ZA 1E8GA 4ML8A 2VFVA 3NRZB 2EXRA 4PVEA 2VFTA 3AN1A 1FO4A 5FXPA 1N5XA 4PVKA 2P3HA 2VFRA 1JRPA 4PZFA 4PYTA 3RJAA 1V97A 2UUUA 5AE3A 4MLAA 3LAEA 1DZNA 1E8HA 2I0KA 3NVWB 5I1VA 1W1SA 3DQ0A 2BVGA 2NQWA 2Y3RA 1HSKA 2W3RA 3KJMA 3ETRB 5FXEA 3S1EA 4BBYA 3BW7A 4UD8A 2BVHA 4XLOA 5L6FA 2AXRA 3NS1B 4HG0A 1RM6B 5AE1A 1WYGA 3FWAA 1N5WC 3PM9A 5AE2A 1AHZA 1QLTA 3I99A 3AMZA 4DNSA 5G5GB 3AM9A 3GSYA 3TX1A 1W1KA 2Y3SA 1N63C 4ZOHB 2W3SA 2P4PA 2W55A 1W1RA 2O3GA 3C0PA 1UXYA 3D2DA 3D2HA 4EC3A 2R8DA 1MBBA 1E0YA 4OALA 3VTEA 3NVVB 2PLIA 1N60C 2VFUA 4BCAA 1W1OA 2QPMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVE A;  1ZR6 A;  2Y08 A;  3POP A;  4PWC A;  5AWV A;  3FW8 A;  3FW9 A;  4DNS A;  3HSU A;  2IPI A;  3FW7 A;  3TSJ A;  2BVF A;  4PZF A;  4PVJ A;  3RJA A;  3GSY A;  2UUU A;  4PVH A;  5I1W A;  2Y4G A;  5I1V A;  3D2J A;  3W8W A;  2Y3S A;  3RJ8 A;  3PQB A;  5D79 A;  4PWB A;  2UUV A;  3TSH A;  2BVG A;  2Y3R A;  5K8E A;  3D2D A;  3D2H A;  4EC3 A;  3VTE A;  5L6G A;  4UD8 A;  2BVH A;  5L6F A;  4XLO A;  2AXR A;  3W8X A;  3W8Z A;  4PVK A;  2WDW A;  3FWA A; 
#chains in the Genus database with same CATH topology
 1W1M A;  1ZR6 A;  2Y08 A;  5FXD A;  1MBT A;  2VFS A;  4PWC A;  5HMR A;  3FW8 A;  3FW9 A;  1I19 A;  2IPI A;  4PVJ A;  5HQX A;  1FFU C;  4PVH A;  2Y4G A;  3RJ8 A;  5D79 A;  2RK5 A;  3NVZ B;  3PQB A;  4PWB A;  5ADZ A;  3EUB 3;  5G5H B;  1ZXI C;  2YVS A;  3S1C A;  2P13 A;  2E3T A;  3B9J B;  3S1F A;  2Q4W A;  5L6G A;  1N62 C;  2R2Z A;  2GQU A;  4JB1 A;  5HHZ A;  1DII A;  1W1J A;  4BC7 A;  1AHU A;  3POP A;  5AWV A;  1FFV C;  2OAI A;  3DED A;  3HSU A;  2PLS A;  3FW7 A;  5FXF A;  2BVF A;  3TSJ A;  1W1Q A;  1E8F A;  2W54 A;  2QKN A;  5I1W A;  3D2J A;  3W8W A;  1N61 C;  1DIQ A;  1QLU A;  1WVE A;  3JS8 A;  2UUV A;  3TSH A;  4JAY A;  1SB3 B;  3SR6 B;  4BC9 A;  5K8E A;  2Q85 A;  3LLB A;  1FIQ B;  2GQT A;  1AHV A;  1VDV A;  2VAO A;  4O95 A;  1WVF A;  1F0X A;  1T3Q C;  3S1D A;  1JRO A;  3NVY B;  1VAO A;  3W8X A;  1W1L A;  2MBR A;  2WDW A;  3HRD C;  3W8Z A;  1E8G A;  4ML8 A;  2VFV A;  3NRZ B;  2EXR A;  4PVE A;  2VFT A;  3AN1 A;  1FO4 A;  5FXP A;  1N5X A;  4PVK A;  2P3H A;  2VFR A;  1JRP A;  4PZF A;  4PYT A;  3RJA A;  1V97 A;  2UUU A;  5AE3 A;  4MLA A;  3LAE A;  1DZN A;  1E8H A;  2I0K A;  3NVW B;  5I1V A;  1W1S A;  3DQ0 A;  2BVG A;  2NQW A;  2Y3R A;  1HSK A;  2W3R A;  3KJM A;  3ETR B;  5FXE A;  3S1E A;  4BBY A;  3BW7 A;  4UD8 A;  2BVH A;  4XLO A;  5L6F A;  2AXR A;  3NS1 B;  4HG0 A;  1RM6 B;  5AE1 A;  1WYG A;  3FWA A;  1N5W C;  3PM9 A;  5AE2 A;  1AHZ A;  1QLT A;  3I99 A;  3AMZ A;  4DNS A;  5G5G B;  3AM9 A;  3GSY A;  3TX1 A;  1W1K A;  2Y3S A;  1N63 C;  4ZOH B;  2W3S A;  2P4P A;  2W55 A;  1W1R A;  2O3G A;  3C0P A;  1UXY A;  3D2D A;  3D2H A;  4EC3 A;  2R8D A;  1MBB A;  1E0Y A;  4OAL A;  3VTE A;  3NVV B;  2PLI A;  1N60 C;  2VFU A;  4BCA A;  1W1O A;  2QPM A; 
#chains in the Genus database with same CATH homology
 1W1M A;  1ZR6 A;  2Y08 A;  5FXD A;  1MBT A;  2VFS A;  4PWC A;  5HMR A;  3FW8 A;  3FW9 A;  1I19 A;  2IPI A;  4PVJ A;  5HQX A;  1FFU C;  4PVH A;  2Y4G A;  3RJ8 A;  5D79 A;  2RK5 A;  3NVZ B;  3PQB A;  4PWB A;  5ADZ A;  3EUB 3;  5G5H B;  1ZXI C;  2YVS A;  3S1C A;  2P13 A;  2E3T A;  3B9J B;  3S1F A;  2Q4W A;  5L6G A;  1N62 C;  2R2Z A;  2GQU A;  4JB1 A;  5HHZ A;  1DII A;  1W1J A;  4BC7 A;  1AHU A;  3POP A;  5AWV A;  1FFV C;  2OAI A;  3DED A;  3HSU A;  2PLS A;  3FW7 A;  5FXF A;  2BVF A;  3TSJ A;  1W1Q A;  1E8F A;  2W54 A;  2QKN A;  5I1W A;  3D2J A;  3W8W A;  1N61 C;  1DIQ A;  1QLU A;  1WVE A;  3JS8 A;  2UUV A;  3TSH A;  4JAY A;  1SB3 B;  3SR6 B;  4BC9 A;  5K8E A;  2Q85 A;  3LLB A;  1FIQ B;  2GQT A;  1AHV A;  1VDV A;  2VAO A;  4O95 A;  1WVF A;  1F0X A;  1T3Q C;  3S1D A;  1JRO A;  3NVY B;  1VAO A;  3W8X A;  1W1L A;  2MBR A;  2WDW A;  3HRD C;  3W8Z A;  1E8G A;  4ML8 A;  2VFV A;  3NRZ B;  2EXR A;  4PVE A;  2VFT A;  3AN1 A;  1FO4 A;  5FXP A;  1N5X A;  4PVK A;  2P3H A;  2VFR A;  1JRP A;  4PZF A;  4PYT A;  3RJA A;  1V97 A;  2UUU A;  5AE3 A;  4MLA A;  3LAE A;  1DZN A;  1E8H A;  2I0K A;  3NVW B;  5I1V A;  1W1S A;  3DQ0 A;  2BVG A;  2NQW A;  2Y3R A;  1HSK A;  2W3R A;  3KJM A;  3ETR B;  5FXE A;  3S1E A;  4BBY A;  3BW7 A;  4UD8 A;  2BVH A;  4XLO A;  5L6F A;  2AXR A;  3NS1 B;  4HG0 A;  1RM6 B;  5AE1 A;  1WYG A;  3FWA A;  1N5W C;  3PM9 A;  5AE2 A;  1AHZ A;  1QLT A;  3I99 A;  3AMZ A;  4DNS A;  5G5G B;  3AM9 A;  3GSY A;  3TX1 A;  1W1K A;  2Y3S A;  1N63 C;  4ZOH B;  2W3S A;  2P4P A;  2W55 A;  1W1R A;  2O3G A;  3C0P A;  1UXY A;  3D2D A;  3D2H A;  4EC3 A;  2R8D A;  1MBB A;  1E0Y A;  4OAL A;  3VTE A;  3NVV B;  2PLI A;  1N60 C;  2VFU A;  4BCA A;  1W1O A;  2QPM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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