3FW9A

Structure of berberine bridge enzyme in complex with (s)-scoulerine
Total Genus 169
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoprotein
molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw9A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw9A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw9A03
4BBYA 1W1MA 5I1VA 1N5WC 2VAOA 4ML8A 4BCAA 4BC7A 1WYGA 2WDWA 2VFSA 1QLTA 5FXFA 3RJ8A 5L6GA 5AE3A 3AM9A 2Y3SA 3B9JB 3AMZA 2GQTA 3KJMA 4JAYA 2BVHA 2QPMA 1W1OA 2AXRA 1N5XA 1E8HA 1W1SA 3NVZB 3PQBA 1FFVC 4PZFA 3HSUA 1VDVA 2W54A 3W8WA 2VFTA 3D2HA 3FW8A 3BW7A 3TX1A 5HQXA 3AN1A 1FO4A 3EUB3 1E0YA 5AWVA 4PVEA 4PVJA 1FFUC 2Q4WA 5HMRA 3RJAA 4PVKA 1VAOA 1ZR6A 4ZOHB 3D2DA 5HHZA 3W8XA 5FXDA 5FXPA 2EXRA 4XLOA 1W1KA 2E3TA 4JB1A 4PYTA 4PWBA 2Y3RA 3SR6B 1T3QC 3JS8A 1N63C 1MBBA 3TSJA 1HSKA 2VFRA 3D2JA 4UD8A 2MBRA 1DIIA 2W3SA 1W1LA 3PM9A 3S1DA 2Y4GA 3NRZB 1W1RA 1MBTA 1W1QA 2VFUA 3NS1B 5D79A 1JROA 1AHZA 3POPA 1F0XA 1WVEA 5K8EA 3FW7A 4PWCA 1ZXIC 1N62C 3I99A 3VTEA 3S1EA 2BVFA 3S1FA 1N61C 5FXEA 2QKNA 5AE2A 5ADZA 4PVHA 3DQ0A 4OALA 3C0PA 1V97A 2VFVA 2I0KA 1DIQA 2Q85A 4BC9A 5I1WA 1N60C 1UXYA 5AE1A 2IPIA 1AHUA 3ETRB 4EC3A 4DNSA 2W55A 3FW9A 3TSHA 2BVGA 3S1CA 3W8ZA 4MLAA 1DZNA 2GQUA 1FIQB 2Y08A 3FWAA 1QLUA 5L6FA 1E8FA 2W3RA 1I19A 1W1JA 4O95A 1E8GA 3GSYA 1AHVA 1WVFA
chains in the Genus database with same CATH superfamily
4BBYA 1W1MA 5I1VA 1N5WC 2VAOA 4ML8A 4BCAA 4BC7A 1WYGA 2WDWA 2VFSA 1QLTA 5FXFA 3RJ8A 5L6GA 5AE3A 3AM9A 2Y3SA 3B9JB 3AMZA 2GQTA 3KJMA 4JAYA 2BVHA 2PLSA 2QPMA 1W1OA 2P13A 2AXRA 1N5XA 1E8HA 1W1SA 3HRDC 3NVZB 3PQBA 1FFVC 4PZFA 3HSUA 3NVWB 1VDVA 2W54A 3W8WA 2UUVA 2VFTA 3D2HA 3FW8A 3BW7A 3TX1A 5HQXA 3AN1A 1FO4A 3EUB3 1E0YA 5AWVA 4PVEA 4PVJA 1FFUC 2Q4WA 5HMRA 3RJAA 4PVKA 1VAOA 1ZR6A 3EJBB 4ZOHB 3D2DA 5HHZA 3W8XA 5FXDA 3EJDB 5FXPA 2EXRA 4XLOA 1W1KA 2E3TA 4JB1A 1RM6B 4PYTA 4PWBA 2Y3RA 3SR6B 1T3QC 3JS8A 1N63C 1MBBA 3TSJA 1HSKA 2VFRA 3D2JA 2R2ZA 4UD8A 2MBRA 1DIIA 2W3SA 3LAEA 1W1LA 3PM9A 3EJEB 3S1DA 2Y4GA 3NRZB 1W1RA 1MBTA 1W1QA 2VFUA 3NS1B 2RK5A 5D79A 1JROA 1AHZA 3POPA 1F0XA 1WVEA 5K8EA 3FW7A 4PWCA 1ZXIC 1N62C 3I99A 3VTEA 3S1EA 2BVFA 2OAIA 3S1FA 1N61C 2PLIA 5FXEA 2QKNA 5AE2A 5ADZA 2R8DA 4PVHA 3NVVB 4HG0A 3DQ0A 3DEDA 4OALA 3C0PA 2P4PA 1V97A 2VFVA 1JRPA 2I0KA 5G5HB 1DIQA 2Q85A 4BC9A 2UUUA 5I1WA 1N60C 3LLBA 2YVSA 1UXYA 5G5GB 5AE1A 2P3HA 2IPIA 1AHUA 3ETRB 4EC3A 2O3GA 4DNSA 2W55A 3FW9A 3TSHA 2BVGA 3S1CA 3W8ZA 4MLAA 1DZNA 2GQUA 1FIQB 2Y08A 3FWAA 1QLUA 5L6FA 3NVYB 1E8FA 1SB3B 2W3RA 1I19A 2NQWA 1W1JA 4O95A 1E8GA 3GSYA 1AHVA 1WVFA
chains in the Genus database with same CATH topology
4BBYA 1W1MA 5I1VA 1N5WC 2VAOA 4ML8A 4BCAA 4BC7A 1WYGA 2WDWA 2VFSA 1QLTA 5FXFA 3RJ8A 5L6GA 5AE3A 3AM9A 2Y3SA 3B9JB 3AMZA 2GQTA 3KJMA 4JAYA 2BVHA 2PLSA 2QPMA 1W1OA 2P13A 2AXRA 1N5XA 1E8HA 1W1SA 3HRDC 3NVZB 3PQBA 1FFVC 4PZFA 3HSUA 3NVWB 1VDVA 2W54A 3W8WA 2UUVA 2VFTA 3D2HA 3FW8A 3BW7A 3TX1A 5HQXA 3AN1A 1FO4A 3EUB3 1E0YA 5AWVA 4PVEA 4PVJA 1FFUC 2Q4WA 5HMRA 3RJAA 4PVKA 1VAOA 1ZR6A 4ZOHB 3D2DA 5HHZA 3W8XA 5FXDA 5FXPA 2EXRA 4XLOA 1W1KA 2E3TA 4JB1A 1RM6B 4PYTA 4PWBA 2Y3RA 3SR6B 1T3QC 3JS8A 1N63C 1MBBA 3TSJA 1HSKA 2VFRA 3D2JA 2R2ZA 4UD8A 2MBRA 1DIIA 2W3SA 3LAEA 1W1LA 3PM9A 3S1DA 2Y4GA 3NRZB 1W1RA 1MBTA 1W1QA 2VFUA 3NS1B 2RK5A 5D79A 1JROA 1AHZA 3POPA 1F0XA 1WVEA 5K8EA 3FW7A 4PWCA 1ZXIC 1N62C 3I99A 3VTEA 3S1EA 2BVFA 2OAIA 3S1FA 1N61C 2PLIA 5FXEA 2QKNA 5AE2A 5ADZA 2R8DA 4PVHA 3NVVB 4HG0A 3DQ0A 3DEDA 4OALA 3C0PA 2P4PA 1V97A 2VFVA 1JRPA 2I0KA 5G5HB 1DIQA 2Q85A 4BC9A 2UUUA 5I1WA 1N60C 3LLBA 2YVSA 1UXYA 5G5GB 5AE1A 2P3HA 2IPIA 1AHUA 3ETRB 4EC3A 2O3GA 4DNSA 2W55A 3FW9A 3TSHA 2BVGA 3S1CA 3W8ZA 4MLAA 1DZNA 2GQUA 1FIQB 2Y08A 3FWAA 1QLUA 5L6FA 3NVYB 1E8FA 1SB3B 2W3RA 1I19A 2NQWA 1W1JA 4O95A 1E8GA 3GSYA 1AHVA 1WVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBY A;  1W1M A;  5I1V A;  1N5W C;  2VAO A;  4ML8 A;  4BCA A;  4BC7 A;  1WYG A;  2WDW A;  2VFS A;  1QLT A;  5FXF A;  3RJ8 A;  5L6G A;  5AE3 A;  3AM9 A;  2Y3S A;  3B9J B;  3AMZ A;  2GQT A;  3KJM A;  4JAY A;  2BVH A;  2QPM A;  1W1O A;  2AXR A;  1N5X A;  1E8H A;  1W1S A;  3NVZ B;  3PQB A;  1FFV C;  4PZF A;  3HSU A;  1VDV A;  2W54 A;  3W8W A;  2VFT A;  3D2H A;  3FW8 A;  3BW7 A;  3TX1 A;  5HQX A;  3AN1 A;  1FO4 A;  3EUB 3;  1E0Y A;  5AWV A;  4PVE A;  4PVJ A;  1FFU C;  2Q4W A;  5HMR A;  3RJA A;  4PVK A;  1VAO A;  1ZR6 A;  4ZOH B;  3D2D A;  5HHZ A;  3W8X A;  5FXD A;  5FXP A;  2EXR A;  4XLO A;  1W1K A;  2E3T A;  4JB1 A;  4PYT A;  4PWB A;  2Y3R A;  3SR6 B;  1T3Q C;  3JS8 A;  1N63 C;  1MBB A;  3TSJ A;  1HSK A;  2VFR A;  3D2J A;  4UD8 A;  2MBR A;  1DII A;  2W3S A;  1W1L A;  3PM9 A;  3S1D A;  2Y4G A;  3NRZ B;  1W1R A;  1MBT A;  1W1Q A;  2VFU A;  3NS1 B;  5D79 A;  1JRO A;  1AHZ A;  3POP A;  1F0X A;  1WVE A;  5K8E A;  3FW7 A;  4PWC A;  1ZXI C;  1N62 C;  3I99 A;  3VTE A;  3S1E A;  2BVF A;  3S1F A;  1N61 C;  5FXE A;  2QKN A;  5AE2 A;  5ADZ A;  4PVH A;  3DQ0 A;  4OAL A;  3C0P A;  1V97 A;  2VFV A;  2I0K A;  1DIQ A;  2Q85 A;  4BC9 A;  5I1W A;  1N60 C;  1UXY A;  5AE1 A;  2IPI A;  1AHU A;  3ETR B;  4EC3 A;  4DNS A;  2W55 A;  3FW9 A;  3TSH A;  2BVG A;  3S1C A;  3W8Z A;  4MLA A;  1DZN A;  2GQU A;  1FIQ B;  2Y08 A;  3FWA A;  1QLU A;  5L6F A;  1E8F A;  2W3R A;  1I19 A;  1W1J A;  4O95 A;  1E8G A;  3GSY A;  1AHV A;  1WVF A; 
#chains in the Genus database with same CATH topology
 4BBY A;  1W1M A;  5I1V A;  1N5W C;  2VAO A;  4ML8 A;  4BCA A;  4BC7 A;  1WYG A;  2WDW A;  2VFS A;  1QLT A;  5FXF A;  3RJ8 A;  5L6G A;  5AE3 A;  3AM9 A;  2Y3S A;  3B9J B;  3AMZ A;  2GQT A;  3KJM A;  4JAY A;  2BVH A;  2PLS A;  2QPM A;  1W1O A;  2P13 A;  2AXR A;  1N5X A;  1E8H A;  1W1S A;  3HRD C;  3NVZ B;  3PQB A;  1FFV C;  4PZF A;  3HSU A;  3NVW B;  1VDV A;  2W54 A;  3W8W A;  2UUV A;  2VFT A;  3D2H A;  3FW8 A;  3BW7 A;  3TX1 A;  5HQX A;  3AN1 A;  1FO4 A;  3EUB 3;  1E0Y A;  5AWV A;  4PVE A;  4PVJ A;  1FFU C;  2Q4W A;  5HMR A;  3RJA A;  4PVK A;  1VAO A;  1ZR6 A;  3EJB B;  4ZOH B;  3D2D A;  5HHZ A;  3W8X A;  5FXD A;  3EJD B;  5FXP A;  2EXR A;  4XLO A;  1W1K A;  2E3T A;  4JB1 A;  1RM6 B;  4PYT A;  4PWB A;  2Y3R A;  3SR6 B;  1T3Q C;  3JS8 A;  1N63 C;  1MBB A;  3TSJ A;  1HSK A;  2VFR A;  3D2J A;  2R2Z A;  4UD8 A;  2MBR A;  1DII A;  2W3S A;  3LAE A;  1W1L A;  3PM9 A;  3EJE B;  3S1D A;  2Y4G A;  3NRZ B;  1W1R A;  1MBT A;  1W1Q A;  2VFU A;  3NS1 B;  2RK5 A;  5D79 A;  1JRO A;  1AHZ A;  3POP A;  1F0X A;  1WVE A;  5K8E A;  3FW7 A;  4PWC A;  1ZXI C;  1N62 C;  3I99 A;  3VTE A;  3S1E A;  2BVF A;  2OAI A;  3S1F A;  1N61 C;  2PLI A;  5FXE A;  2QKN A;  5AE2 A;  5ADZ A;  2R8D A;  4PVH A;  3NVV B;  4HG0 A;  3DQ0 A;  3DED A;  4OAL A;  3C0P A;  2P4P A;  1V97 A;  2VFV A;  1JRP A;  2I0K A;  5G5H B;  1DIQ A;  2Q85 A;  4BC9 A;  2UUU A;  5I1W A;  1N60 C;  3LLB A;  2YVS A;  1UXY A;  5G5G B;  5AE1 A;  2P3H A;  2IPI A;  1AHU A;  3ETR B;  4EC3 A;  2O3G A;  4DNS A;  2W55 A;  3FW9 A;  3TSH A;  2BVG A;  3S1C A;  3W8Z A;  4MLA A;  1DZN A;  2GQU A;  1FIQ B;  2Y08 A;  3FWA A;  1QLU A;  5L6F A;  3NVY B;  1E8F A;  1SB3 B;  2W3R A;  1I19 A;  2NQW A;  1W1J A;  4O95 A;  1E8G A;  3GSY A;  1AHV A;  1WVF A; 
#chains in the Genus database with same CATH homology
 4BBY A;  1W1M A;  5I1V A;  1N5W C;  2VAO A;  4ML8 A;  4BCA A;  4BC7 A;  1WYG A;  2WDW A;  2VFS A;  1QLT A;  5FXF A;  3RJ8 A;  5L6G A;  5AE3 A;  3AM9 A;  2Y3S A;  3B9J B;  3AMZ A;  2GQT A;  3KJM A;  4JAY A;  2BVH A;  2PLS A;  2QPM A;  1W1O A;  2P13 A;  2AXR A;  1N5X A;  1E8H A;  1W1S A;  3HRD C;  3NVZ B;  3PQB A;  1FFV C;  4PZF A;  3HSU A;  3NVW B;  1VDV A;  2W54 A;  3W8W A;  2UUV A;  2VFT A;  3D2H A;  3FW8 A;  3BW7 A;  3TX1 A;  5HQX A;  3AN1 A;  1FO4 A;  3EUB 3;  1E0Y A;  5AWV A;  4PVE A;  4PVJ A;  1FFU C;  2Q4W A;  5HMR A;  3RJA A;  4PVK A;  1VAO A;  1ZR6 A;  4ZOH B;  3D2D A;  5HHZ A;  3W8X A;  5FXD A;  5FXP A;  2EXR A;  4XLO A;  1W1K A;  2E3T A;  4JB1 A;  1RM6 B;  4PYT A;  4PWB A;  2Y3R A;  3SR6 B;  1T3Q C;  3JS8 A;  1N63 C;  1MBB A;  3TSJ A;  1HSK A;  2VFR A;  3D2J A;  2R2Z A;  4UD8 A;  2MBR A;  1DII A;  2W3S A;  3LAE A;  1W1L A;  3PM9 A;  3S1D A;  2Y4G A;  3NRZ B;  1W1R A;  1MBT A;  1W1Q A;  2VFU A;  3NS1 B;  2RK5 A;  5D79 A;  1JRO A;  1AHZ A;  3POP A;  1F0X A;  1WVE A;  5K8E A;  3FW7 A;  4PWC A;  1ZXI C;  1N62 C;  3I99 A;  3VTE A;  3S1E A;  2BVF A;  2OAI A;  3S1F A;  1N61 C;  2PLI A;  5FXE A;  2QKN A;  5AE2 A;  5ADZ A;  2R8D A;  4PVH A;  3NVV B;  4HG0 A;  3DQ0 A;  3DED A;  4OAL A;  3C0P A;  2P4P A;  1V97 A;  2VFV A;  1JRP A;  2I0K A;  5G5H B;  1DIQ A;  2Q85 A;  4BC9 A;  2UUU A;  5I1W A;  1N60 C;  3LLB A;  2YVS A;  1UXY A;  5G5G B;  5AE1 A;  2P3H A;  2IPI A;  1AHU A;  3ETR B;  4EC3 A;  2O3G A;  4DNS A;  2W55 A;  3FW9 A;  3TSH A;  2BVG A;  3S1C A;  3W8Z A;  4MLA A;  1DZN A;  2GQU A;  1FIQ B;  2Y08 A;  3FWA A;  1QLU A;  5L6F A;  3NVY B;  1E8F A;  1SB3 B;  2W3R A;  1I19 A;  2NQW A;  1W1J A;  4O95 A;  1E8G A;  3GSY A;  1AHV A;  1WVF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...