3FW9A

Structure of berberine bridge enzyme in complex with (s)-scoulerine
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoprotein
source organism Eschscholzia californica
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
molecule keywords Reticuline oxidase
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw9A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw9A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw9A03
2QPMA 3HSUA 5FXFA 3KJMA 3SR6B 2EXRA 1N62C 1JROA 2W3RA 5AE3A 3NS1B 1N5WC 3D2HA 4O95A 1W1OA 3C0PA 4BBYA 5HMRA 2W55A 4PVJA 1W1RA 4EC3A 4PVEA 3TSJA 1F0XA 2Y08A 1VAOA 4JB1A 4BC7A 2Q85A 3FWAA 5L6FA 2GQTA 2VFTA 2QKNA 1FIQB 5L6GA 1AHVA 4PYTA 4ZOHB 1WVEA 2W3SA 2BVHA 5K8EA 1MBTA 3W8WA 1DIIA 3S1CA 1N61C 3BW7A 4PWBA 4ML8A 2BVFA 1W1QA 3W8ZA 3ETRB 2IPIA 1ZR6A 5I1VA 4PZFA 1E8GA 1FO4A 3D2JA 1E8HA 3FW7A 2W54A 5HQXA 3PQBA 2VFRA 2Y4GA 4UD8A 2Q4WA 3B9JB 2AXRA 1DZNA 4JAYA 3VTEA 1UXYA 3JS8A 3S1FA 3POPA 1W1KA 5D79A 5FXPA 1E0YA 1DIQA 3AMZA 1WVFA 1HSKA 1T3QC 3EUB3 3NVZB 3FW9A 5AE1A 1VDVA 4PVKA 3PM9A 1E8FA 2I0KA 2Y3SA 3NRZB 2VFSA 2VFUA 1N5XA 1W1MA 3AM9A 3AN1A 1MBBA 4BCAA 1ZXIC 3DQ0A 3TX1A 1FFUC 5I1WA 2WDWA 1V97A 3TSHA 5HHZA 4PVHA 1I19A 3RJAA 3FW8A 2VAOA 5FXDA 3I99A 3GSYA 4BC9A 2MBRA 4MLAA 2BVGA 2GQUA 1N60C 2E3TA 3RJ8A 3W8XA 4XLOA 1AHZA 3S1EA 1QLUA 1W1SA 1WYGA 5AWVA 3S1DA 4DNSA 1N63C 4PWCA 4OALA 1QLTA 5AE2A 1W1LA 5ADZA 2VFVA 3D2DA 1AHUA 5FXEA 2Y3RA 1W1JA 1FFVC
chains in the Genus database with same CATH superfamily
2O3GA 2QPMA 2OAIA 3HSUA 5FXFA 3KJMA 3SR6B 2EXRA 1N62C 1JROA 2W3RA 5AE3A 1SB3B 3NS1B 1N5WC 3D2HA 4O95A 1W1OA 3C0PA 3EJEB 4BBYA 5HMRA 3NVWB 2W55A 4PVJA 1W1RA 4EC3A 4HG0A 4PVEA 3TSJA 2P3HA 1F0XA 2UUVA 2Y08A 1VAOA 4JB1A 4BC7A 2NQWA 2Q85A 3FWAA 5L6FA 2GQTA 2VFTA 2QKNA 1FIQB 5L6GA 1AHVA 4PYTA 4ZOHB 1WVEA 2W3SA 3DEDA 2BVHA 5K8EA 1MBTA 3W8WA 1DIIA 2RK5A 1RM6B 3S1CA 2P4PA 1N61C 3BW7A 4PWBA 4ML8A 2BVFA 1W1QA 3W8ZA 3ETRB 2IPIA 1ZR6A 5I1VA 4PZFA 1E8GA 1FO4A 3D2JA 1E8HA 3FW7A 2W54A 3NVYB 5HQXA 3PQBA 2VFRA 2Y4GA 4UD8A 2Q4WA 3B9JB 2AXRA 1JRPA 1DZNA 4JAYA 3VTEA 3NVVB 1UXYA 3JS8A 3S1FA 3POPA 1W1KA 5D79A 5FXPA 1E0YA 2R2ZA 2PLIA 1DIQA 3AMZA 2PLSA 1WVFA 1HSKA 1T3QC 3EUB3 3NVZB 3FW9A 5AE1A 1VDVA 3EJBB 4PVKA 3PM9A 1E8FA 2I0KA 3EJDB 2R8DA 3NRZB 2Y3SA 2VFSA 2VFUA 1N5XA 1W1MA 3AM9A 3AN1A 1MBBA 4BCAA 1ZXIC 3DQ0A 3TX1A 1FFUC 5I1WA 2WDWA 1V97A 3TSHA 2P13A 5HHZA 4PVHA 1I19A 5G5HB 5G5GB 3RJAA 3FW8A 2VAOA 5FXDA 3I99A 3GSYA 4BC9A 2MBRA 2UUUA 4MLAA 2BVGA 2GQUA 1N60C 2E3TA 3RJ8A 3W8XA 4XLOA 1AHZA 3S1EA 1QLUA 1W1SA 1WYGA 5AWVA 3S1DA 4DNSA 3HRDC 1N63C 4PWCA 4OALA 3LAEA 1QLTA 5AE2A 1W1LA 5ADZA 2YVSA 2VFVA 3D2DA 1AHUA 5FXEA 2Y3RA 1W1JA 3LLBA 1FFVC
chains in the Genus database with same CATH topology
2O3GA 2QPMA 2OAIA 3HSUA 5FXFA 3KJMA 3SR6B 2EXRA 1N62C 1JROA 2W3RA 5AE3A 1SB3B 3NS1B 1N5WC 3D2HA 4O95A 1W1OA 3C0PA 4BBYA 5HMRA 3NVWB 2W55A 4PVJA 1W1RA 4EC3A 4HG0A 4PVEA 3TSJA 2P3HA 1F0XA 2UUVA 2Y08A 1VAOA 4JB1A 4BC7A 2NQWA 2Q85A 3FWAA 5L6FA 2GQTA 2VFTA 2QKNA 1FIQB 5L6GA 1AHVA 4PYTA 4ZOHB 1WVEA 2W3SA 3DEDA 2BVHA 5K8EA 1MBTA 3W8WA 1DIIA 2RK5A 1RM6B 3S1CA 2P4PA 1N61C 3BW7A 4PWBA 4ML8A 2BVFA 1W1QA 3W8ZA 3ETRB 2IPIA 1ZR6A 5I1VA 4PZFA 1E8GA 1FO4A 3D2JA 1E8HA 3FW7A 2W54A 5HQXA 3NVYB 3PQBA 2VFRA 2Y4GA 4UD8A 2Q4WA 3B9JB 2AXRA 1JRPA 1DZNA 4JAYA 3VTEA 3NVVB 1UXYA 3JS8A 3S1FA 3POPA 1W1KA 5D79A 5FXPA 1E0YA 2R2ZA 2PLIA 1DIQA 3AMZA 2PLSA 1WVFA 1HSKA 1T3QC 3EUB3 3NVZB 3FW9A 5AE1A 1VDVA 4PVKA 3PM9A 1E8FA 2I0KA 2R8DA 2Y3SA 3NRZB 2VFSA 2VFUA 1N5XA 1W1MA 3AM9A 3AN1A 1MBBA 4BCAA 1ZXIC 3DQ0A 3TX1A 1FFUC 5I1WA 2WDWA 1V97A 3TSHA 2P13A 5HHZA 4PVHA 1I19A 5G5HB 5G5GB 3RJAA 3FW8A 2VAOA 5FXDA 3I99A 3GSYA 4BC9A 2MBRA 2UUUA 4MLAA 2BVGA 2GQUA 1N60C 2E3TA 3RJ8A 3W8XA 4XLOA 1AHZA 3S1EA 1QLUA 1W1SA 1WYGA 5AWVA 3S1DA 4DNSA 3HRDC 1N63C 4PWCA 4OALA 3LAEA 1QLTA 5AE2A 1W1LA 5ADZA 2YVSA 2VFVA 3D2DA 1AHUA 5FXEA 2Y3RA 1W1JA 3LLBA 1FFVC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QPM A;  3HSU A;  5FXF A;  3KJM A;  3SR6 B;  2EXR A;  1N62 C;  1JRO A;  2W3R A;  5AE3 A;  3NS1 B;  1N5W C;  3D2H A;  4O95 A;  1W1O A;  3C0P A;  4BBY A;  5HMR A;  2W55 A;  4PVJ A;  1W1R A;  4EC3 A;  4PVE A;  3TSJ A;  1F0X A;  2Y08 A;  1VAO A;  4JB1 A;  4BC7 A;  2Q85 A;  3FWA A;  5L6F A;  2GQT A;  2VFT A;  2QKN A;  1FIQ B;  5L6G A;  1AHV A;  4PYT A;  4ZOH B;  1WVE A;  2W3S A;  2BVH A;  5K8E A;  1MBT A;  3W8W A;  1DII A;  3S1C A;  1N61 C;  3BW7 A;  4PWB A;  4ML8 A;  2BVF A;  1W1Q A;  3W8Z A;  3ETR B;  2IPI A;  1ZR6 A;  5I1V A;  4PZF A;  1E8G A;  1FO4 A;  3D2J A;  1E8H A;  3FW7 A;  2W54 A;  5HQX A;  3PQB A;  2VFR A;  2Y4G A;  4UD8 A;  2Q4W A;  3B9J B;  2AXR A;  1DZN A;  4JAY A;  3VTE A;  1UXY A;  3JS8 A;  3S1F A;  3POP A;  1W1K A;  5D79 A;  5FXP A;  1E0Y A;  1DIQ A;  3AMZ A;  1WVF A;  1HSK A;  1T3Q C;  3EUB 3;  3NVZ B;  3FW9 A;  5AE1 A;  1VDV A;  4PVK A;  3PM9 A;  1E8F A;  2I0K A;  2Y3S A;  3NRZ B;  2VFS A;  2VFU A;  1N5X A;  1W1M A;  3AM9 A;  3AN1 A;  1MBB A;  4BCA A;  1ZXI C;  3DQ0 A;  3TX1 A;  1FFU C;  5I1W A;  2WDW A;  1V97 A;  3TSH A;  5HHZ A;  4PVH A;  1I19 A;  3RJA A;  3FW8 A;  2VAO A;  5FXD A;  3I99 A;  3GSY A;  4BC9 A;  2MBR A;  4MLA A;  2BVG A;  2GQU A;  1N60 C;  2E3T A;  3RJ8 A;  3W8X A;  4XLO A;  1AHZ A;  3S1E A;  1QLU A;  1W1S A;  1WYG A;  5AWV A;  3S1D A;  4DNS A;  1N63 C;  4PWC A;  4OAL A;  1QLT A;  5AE2 A;  1W1L A;  5ADZ A;  2VFV A;  3D2D A;  1AHU A;  5FXE A;  2Y3R A;  1W1J A;  1FFV C; 
#chains in the Genus database with same CATH topology
 2O3G A;  2QPM A;  2OAI A;  3HSU A;  5FXF A;  3KJM A;  3SR6 B;  2EXR A;  1N62 C;  1JRO A;  2W3R A;  5AE3 A;  1SB3 B;  3NS1 B;  1N5W C;  3D2H A;  4O95 A;  1W1O A;  3C0P A;  3EJE B;  4BBY A;  5HMR A;  3NVW B;  2W55 A;  4PVJ A;  1W1R A;  4EC3 A;  4HG0 A;  4PVE A;  3TSJ A;  2P3H A;  1F0X A;  2UUV A;  2Y08 A;  1VAO A;  4JB1 A;  4BC7 A;  2NQW A;  2Q85 A;  3FWA A;  5L6F A;  2GQT A;  2VFT A;  2QKN A;  1FIQ B;  5L6G A;  1AHV A;  4PYT A;  4ZOH B;  1WVE A;  2W3S A;  3DED A;  2BVH A;  5K8E A;  1MBT A;  3W8W A;  1DII A;  2RK5 A;  1RM6 B;  3S1C A;  2P4P A;  1N61 C;  3BW7 A;  4PWB A;  4ML8 A;  2BVF A;  1W1Q A;  3W8Z A;  3ETR B;  2IPI A;  1ZR6 A;  5I1V A;  4PZF A;  1E8G A;  1FO4 A;  3D2J A;  1E8H A;  3FW7 A;  2W54 A;  3NVY B;  5HQX A;  3PQB A;  2VFR A;  2Y4G A;  4UD8 A;  2Q4W A;  3B9J B;  2AXR A;  1JRP A;  1DZN A;  4JAY A;  3VTE A;  3NVV B;  1UXY A;  3JS8 A;  3S1F A;  3POP A;  1W1K A;  5D79 A;  5FXP A;  1E0Y A;  2R2Z A;  2PLI A;  1DIQ A;  3AMZ A;  2PLS A;  1WVF A;  1HSK A;  1T3Q C;  3EUB 3;  3NVZ B;  3FW9 A;  5AE1 A;  1VDV A;  3EJB B;  4PVK A;  3PM9 A;  1E8F A;  2I0K A;  3EJD B;  2R8D A;  3NRZ B;  2Y3S A;  2VFS A;  2VFU A;  1N5X A;  1W1M A;  3AM9 A;  3AN1 A;  1MBB A;  4BCA A;  1ZXI C;  3DQ0 A;  3TX1 A;  1FFU C;  5I1W A;  2WDW A;  1V97 A;  3TSH A;  2P13 A;  5HHZ A;  4PVH A;  1I19 A;  5G5H B;  5G5G B;  3RJA A;  3FW8 A;  2VAO A;  5FXD A;  3I99 A;  3GSY A;  4BC9 A;  2MBR A;  2UUU A;  4MLA A;  2BVG A;  2GQU A;  1N60 C;  2E3T A;  3RJ8 A;  3W8X A;  4XLO A;  1AHZ A;  3S1E A;  1QLU A;  1W1S A;  1WYG A;  5AWV A;  3S1D A;  4DNS A;  3HRD C;  1N63 C;  4PWC A;  4OAL A;  3LAE A;  1QLT A;  5AE2 A;  1W1L A;  5ADZ A;  2YVS A;  2VFV A;  3D2D A;  1AHU A;  5FXE A;  2Y3R A;  1W1J A;  3LLB A;  1FFV C; 
#chains in the Genus database with same CATH homology
 2O3G A;  2QPM A;  2OAI A;  3HSU A;  5FXF A;  3KJM A;  3SR6 B;  2EXR A;  1N62 C;  1JRO A;  2W3R A;  5AE3 A;  1SB3 B;  3NS1 B;  1N5W C;  3D2H A;  4O95 A;  1W1O A;  3C0P A;  4BBY A;  5HMR A;  3NVW B;  2W55 A;  4PVJ A;  1W1R A;  4EC3 A;  4HG0 A;  4PVE A;  3TSJ A;  2P3H A;  1F0X A;  2UUV A;  2Y08 A;  1VAO A;  4JB1 A;  4BC7 A;  2NQW A;  2Q85 A;  3FWA A;  5L6F A;  2GQT A;  2VFT A;  2QKN A;  1FIQ B;  5L6G A;  1AHV A;  4PYT A;  4ZOH B;  1WVE A;  2W3S A;  3DED A;  2BVH A;  5K8E A;  1MBT A;  3W8W A;  1DII A;  2RK5 A;  1RM6 B;  3S1C A;  2P4P A;  1N61 C;  3BW7 A;  4PWB A;  4ML8 A;  2BVF A;  1W1Q A;  3W8Z A;  3ETR B;  2IPI A;  1ZR6 A;  5I1V A;  4PZF A;  1E8G A;  1FO4 A;  3D2J A;  1E8H A;  3FW7 A;  2W54 A;  5HQX A;  3NVY B;  3PQB A;  2VFR A;  2Y4G A;  4UD8 A;  2Q4W A;  3B9J B;  2AXR A;  1JRP A;  1DZN A;  4JAY A;  3VTE A;  3NVV B;  1UXY A;  3JS8 A;  3S1F A;  3POP A;  1W1K A;  5D79 A;  5FXP A;  1E0Y A;  2R2Z A;  2PLI A;  1DIQ A;  3AMZ A;  2PLS A;  1WVF A;  1HSK A;  1T3Q C;  3EUB 3;  3NVZ B;  3FW9 A;  5AE1 A;  1VDV A;  4PVK A;  3PM9 A;  1E8F A;  2I0K A;  2R8D A;  2Y3S A;  3NRZ B;  2VFS A;  2VFU A;  1N5X A;  1W1M A;  3AM9 A;  3AN1 A;  1MBB A;  4BCA A;  1ZXI C;  3DQ0 A;  3TX1 A;  1FFU C;  5I1W A;  2WDW A;  1V97 A;  3TSH A;  2P13 A;  5HHZ A;  4PVH A;  1I19 A;  5G5H B;  5G5G B;  3RJA A;  3FW8 A;  2VAO A;  5FXD A;  3I99 A;  3GSY A;  4BC9 A;  2MBR A;  2UUU A;  4MLA A;  2BVG A;  2GQU A;  1N60 C;  2E3T A;  3RJ8 A;  3W8X A;  4XLO A;  1AHZ A;  3S1E A;  1QLU A;  1W1S A;  1WYG A;  5AWV A;  3S1D A;  4DNS A;  3HRD C;  1N63 C;  4PWC A;  4OAL A;  3LAE A;  1QLT A;  5AE2 A;  1W1L A;  5ADZ A;  2YVS A;  2VFV A;  3D2D A;  1AHU A;  5FXE A;  2Y3R A;  1W1J A;  3LLB A;  1FFV C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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