3FW9A

Structure of berberine bridge enzyme in complex with (s)-scoulerine
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoprotein
molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw9A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw9A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw9A03
2VFUA 5L6FA 3GSYA 3VTEA 2BVFA 4DNSA 1N63C 3S1DA 3TX1A 5HMRA 1DZNA 1E0YA 3NVZB 1MBBA 1N62C 2I0KA 3DQ0A 3PQBA 5AE1A 1AHZA 4ML8A 4BCAA 5K8EA 2QPMA 4ZOHB 4JB1A 2VFVA 2VFTA 5ADZA 1DIIA 3AM9A 2W55A 3RJAA 4PZFA 1WVEA 2W54A 4UD8A 1UXYA 3JS8A 2WDWA 2QKNA 3S1EA 1FO4A 2MBRA 1ZXIC 1FFUC 2W3SA 1W1RA 5FXEA 4PYTA 1N5XA 4PVJA 1DIQA 4O95A 5I1VA 2VFSA 2AXRA 3W8ZA 3S1FA 1JROA 4PVKA 4PWCA 3AN1A 1T3QC 4XLOA 1I19A 1N61C 4PVHA 1W1OA 3EUB3 2BVHA 2VFRA 1QLTA 3NRZB 1HSKA 1N60C 1FFVC 3W8XA 1E8GA 5I1WA 1N5WC 3RJ8A 3ETRB 4PVEA 2VAOA 3PM9A 4MLAA 2EXRA 1MBTA 2Y08A 3D2HA 1W1KA 3FWAA 3I99A 5D79A 3C0PA 1AHVA 4PWBA 3SR6B 1V97A 4EC3A 2Y4GA 1QLUA 5FXDA 1W1SA 2Y3SA 5AWVA 2Q4WA 1W1QA 1E8FA 3W8WA 4BC7A 3POPA 3BW7A 1WVFA 3NS1B 3D2JA 3D2DA 3B9JB 3TSHA 1W1JA 4OALA 2IPIA 5AE2A 5HQXA 2GQTA 3FW8A 2BVGA 1WYGA 4BBYA 2Q85A 5L6GA 1F0XA 3TSJA 1VAOA 5FXPA 5AE3A 2GQUA 2E3TA 3KJMA 3FW7A 1E8HA 1AHUA 3S1CA 1W1LA 4BC9A 1ZR6A 1FIQB 3FW9A 5HHZA 2W3RA 3HSUA 1W1MA 4JAYA 5FXFA 1VDVA 3AMZA 2Y3RA
chains in the Genus database with same CATH superfamily
2VFUA 5L6FA 3HRDC 3GSYA 3VTEA 2BVFA 2PLSA 4DNSA 3NVWB 1N63C 5G5HB 3S1DA 3TX1A 5HMRA 1DZNA 1E0YA 3NVZB 1MBBA 1N62C 2I0KA 3DQ0A 2O3GA 5AE1A 3PQBA 1AHZA 4ML8A 4BCAA 1JRPA 5K8EA 2P4PA 3EJDB 2QPMA 3NVYB 4ZOHB 4JB1A 3LAEA 2VFVA 2VFTA 5ADZA 1DIIA 3AM9A 2W55A 2YVSA 3RJAA 4PZFA 2OAIA 2UUUA 1WVEA 2R2ZA 2W54A 3NVVB 4UD8A 1UXYA 3JS8A 2WDWA 2QKNA 3S1EA 1FO4A 2MBRA 1ZXIC 1FFUC 2W3SA 2R8DA 1W1RA 5FXEA 4PYTA 1N5XA 4PVJA 1DIQA 1RM6B 4O95A 5I1VA 2VFSA 2AXRA 3W8ZA 3S1FA 1JROA 4PVKA 4PWCA 2NQWA 3AN1A 1T3QC 4XLOA 1I19A 1N61C 4PVHA 1W1OA 3EUB3 2BVHA 2VFRA 1QLTA 3NRZB 1HSKA 1N60C 2UUVA 2P13A 1FFVC 3W8XA 1E8GA 5I1WA 1N5WC 3RJ8A 3ETRB 4PVEA 2VAOA 3PM9A 4MLAA 2EXRA 1MBTA 2Y08A 3D2HA 1W1KA 3FWAA 3I99A 5D79A 2PLIA 3C0PA 1AHVA 5G5GB 4PWBA 3SR6B 1V97A 4EC3A 2Y4GA 1QLUA 5FXDA 2RK5A 1W1SA 2Y3SA 5AWVA 2Q4WA 1W1QA 1E8FA 3W8WA 4BC7A 3POPA 3BW7A 1WVFA 3LLBA 3NS1B 3D2JA 3EJEB 3D2DA 3B9JB 3TSHA 1W1JA 4OALA 2IPIA 5AE2A 5HQXA 2GQTA 3FW8A 2BVGA 1WYGA 3EJBB 4BBYA 2P3HA 2Q85A 5L6GA 1F0XA 3TSJA 1VAOA 5FXPA 5AE3A 2GQUA 2E3TA 3KJMA 3FW7A 1E8HA 1AHUA 3S1CA 4HG0A 1W1LA 4BC9A 3DEDA 1ZR6A 1FIQB 3FW9A 5HHZA 2W3RA 3HSUA 1SB3B 1W1MA 4JAYA 5FXFA 1VDVA 3AMZA 2Y3RA
chains in the Genus database with same CATH topology
2VFUA 5L6FA 3HRDC 3GSYA 3VTEA 2BVFA 2PLSA 4DNSA 3NVWB 1N63C 5G5HB 3S1DA 3TX1A 5HMRA 1DZNA 1E0YA 3NVZB 1MBBA 1N62C 2I0KA 3DQ0A 2O3GA 5AE1A 3PQBA 1AHZA 4ML8A 4BCAA 1JRPA 5K8EA 2P4PA 3NVYB 2QPMA 4ZOHB 4JB1A 3LAEA 2VFVA 2VFTA 5ADZA 1DIIA 3AM9A 2W55A 2YVSA 3RJAA 4PZFA 2OAIA 2UUUA 1WVEA 2R2ZA 2W54A 3NVVB 4UD8A 1UXYA 3JS8A 2WDWA 2QKNA 3S1EA 1FO4A 2MBRA 1ZXIC 1FFUC 2W3SA 2R8DA 1W1RA 5FXEA 4PYTA 1N5XA 4PVJA 1DIQA 1RM6B 4O95A 5I1VA 2VFSA 2AXRA 3W8ZA 3S1FA 1JROA 4PVKA 4PWCA 2NQWA 3AN1A 1T3QC 4XLOA 1I19A 1N61C 4PVHA 1W1OA 3EUB3 2BVHA 2VFRA 1QLTA 3NRZB 1HSKA 1N60C 2UUVA 2P13A 1FFVC 3W8XA 1E8GA 5I1WA 1N5WC 3RJ8A 3ETRB 4PVEA 2VAOA 3PM9A 4MLAA 2EXRA 1MBTA 2Y08A 3D2HA 1W1KA 3FWAA 3I99A 5D79A 2PLIA 3C0PA 1AHVA 5G5GB 4PWBA 3SR6B 1V97A 4EC3A 2Y4GA 1QLUA 5FXDA 2RK5A 1W1SA 2Y3SA 5AWVA 2Q4WA 1W1QA 1E8FA 3W8WA 4BC7A 3POPA 3BW7A 1WVFA 3LLBA 3NS1B 3D2JA 3D2DA 3B9JB 3TSHA 1W1JA 4OALA 2IPIA 5AE2A 5HQXA 2GQTA 3FW8A 2BVGA 1WYGA 4BBYA 2P3HA 2Q85A 5L6GA 1F0XA 3TSJA 1VAOA 5FXPA 5AE3A 2GQUA 2E3TA 3KJMA 3FW7A 1E8HA 1AHUA 3S1CA 4HG0A 1W1LA 4BC9A 3DEDA 1ZR6A 1FIQB 3FW9A 5HHZA 2W3RA 3HSUA 1SB3B 1W1MA 4JAYA 5FXFA 1VDVA 3AMZA 2Y3RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFU A;  5L6F A;  3GSY A;  3VTE A;  2BVF A;  4DNS A;  1N63 C;  3S1D A;  3TX1 A;  5HMR A;  1DZN A;  1E0Y A;  3NVZ B;  1MBB A;  1N62 C;  2I0K A;  3DQ0 A;  3PQB A;  5AE1 A;  1AHZ A;  4ML8 A;  4BCA A;  5K8E A;  2QPM A;  4ZOH B;  4JB1 A;  2VFV A;  2VFT A;  5ADZ A;  1DII A;  3AM9 A;  2W55 A;  3RJA A;  4PZF A;  1WVE A;  2W54 A;  4UD8 A;  1UXY A;  3JS8 A;  2WDW A;  2QKN A;  3S1E A;  1FO4 A;  2MBR A;  1ZXI C;  1FFU C;  2W3S A;  1W1R A;  5FXE A;  4PYT A;  1N5X A;  4PVJ A;  1DIQ A;  4O95 A;  5I1V A;  2VFS A;  2AXR A;  3W8Z A;  3S1F A;  1JRO A;  4PVK A;  4PWC A;  3AN1 A;  1T3Q C;  4XLO A;  1I19 A;  1N61 C;  4PVH A;  1W1O A;  3EUB 3;  2BVH A;  2VFR A;  1QLT A;  3NRZ B;  1HSK A;  1N60 C;  1FFV C;  3W8X A;  1E8G A;  5I1W A;  1N5W C;  3RJ8 A;  3ETR B;  4PVE A;  2VAO A;  3PM9 A;  4MLA A;  2EXR A;  1MBT A;  2Y08 A;  3D2H A;  1W1K A;  3FWA A;  3I99 A;  5D79 A;  3C0P A;  1AHV A;  4PWB A;  3SR6 B;  1V97 A;  4EC3 A;  2Y4G A;  1QLU A;  5FXD A;  1W1S A;  2Y3S A;  5AWV A;  2Q4W A;  1W1Q A;  1E8F A;  3W8W A;  4BC7 A;  3POP A;  3BW7 A;  1WVF A;  3NS1 B;  3D2J A;  3D2D A;  3B9J B;  3TSH A;  1W1J A;  4OAL A;  2IPI A;  5AE2 A;  5HQX A;  2GQT A;  3FW8 A;  2BVG A;  1WYG A;  4BBY A;  2Q85 A;  5L6G A;  1F0X A;  3TSJ A;  1VAO A;  5FXP A;  5AE3 A;  2GQU A;  2E3T A;  3KJM A;  3FW7 A;  1E8H A;  1AHU A;  3S1C A;  1W1L A;  4BC9 A;  1ZR6 A;  1FIQ B;  3FW9 A;  5HHZ A;  2W3R A;  3HSU A;  1W1M A;  4JAY A;  5FXF A;  1VDV A;  3AMZ A;  2Y3R A; 
#chains in the Genus database with same CATH topology
 2VFU A;  5L6F A;  3HRD C;  3GSY A;  3VTE A;  2BVF A;  2PLS A;  4DNS A;  3NVW B;  1N63 C;  5G5H B;  3S1D A;  3TX1 A;  5HMR A;  1DZN A;  1E0Y A;  3NVZ B;  1MBB A;  1N62 C;  2I0K A;  3DQ0 A;  2O3G A;  5AE1 A;  3PQB A;  1AHZ A;  4ML8 A;  4BCA A;  1JRP A;  5K8E A;  2P4P A;  3EJD B;  2QPM A;  3NVY B;  4ZOH B;  4JB1 A;  3LAE A;  2VFV A;  2VFT A;  5ADZ A;  1DII A;  3AM9 A;  2W55 A;  2YVS A;  3RJA A;  4PZF A;  2OAI A;  2UUU A;  1WVE A;  2R2Z A;  2W54 A;  3NVV B;  4UD8 A;  1UXY A;  3JS8 A;  2WDW A;  2QKN A;  3S1E A;  1FO4 A;  2MBR A;  1ZXI C;  1FFU C;  2W3S A;  2R8D A;  1W1R A;  5FXE A;  4PYT A;  1N5X A;  4PVJ A;  1DIQ A;  1RM6 B;  4O95 A;  5I1V A;  2VFS A;  2AXR A;  3W8Z A;  3S1F A;  1JRO A;  4PVK A;  4PWC A;  2NQW A;  3AN1 A;  1T3Q C;  4XLO A;  1I19 A;  1N61 C;  4PVH A;  1W1O A;  3EUB 3;  2BVH A;  2VFR A;  1QLT A;  3NRZ B;  1HSK A;  1N60 C;  2UUV A;  2P13 A;  1FFV C;  3W8X A;  1E8G A;  5I1W A;  1N5W C;  3RJ8 A;  3ETR B;  4PVE A;  2VAO A;  3PM9 A;  4MLA A;  2EXR A;  1MBT A;  2Y08 A;  3D2H A;  1W1K A;  3FWA A;  3I99 A;  5D79 A;  2PLI A;  3C0P A;  1AHV A;  5G5G B;  4PWB A;  3SR6 B;  1V97 A;  4EC3 A;  2Y4G A;  1QLU A;  5FXD A;  2RK5 A;  1W1S A;  2Y3S A;  5AWV A;  2Q4W A;  1W1Q A;  1E8F A;  3W8W A;  4BC7 A;  3POP A;  3BW7 A;  1WVF A;  3LLB A;  3NS1 B;  3D2J A;  3EJE B;  3D2D A;  3B9J B;  3TSH A;  1W1J A;  4OAL A;  2IPI A;  5AE2 A;  5HQX A;  2GQT A;  3FW8 A;  2BVG A;  1WYG A;  3EJB B;  4BBY A;  2P3H A;  2Q85 A;  5L6G A;  1F0X A;  3TSJ A;  1VAO A;  5FXP A;  5AE3 A;  2GQU A;  2E3T A;  3KJM A;  3FW7 A;  1E8H A;  1AHU A;  3S1C A;  4HG0 A;  1W1L A;  4BC9 A;  3DED A;  1ZR6 A;  1FIQ B;  3FW9 A;  5HHZ A;  2W3R A;  3HSU A;  1SB3 B;  1W1M A;  4JAY A;  5FXF A;  1VDV A;  3AMZ A;  2Y3R A; 
#chains in the Genus database with same CATH homology
 2VFU A;  5L6F A;  3HRD C;  3GSY A;  3VTE A;  2BVF A;  2PLS A;  4DNS A;  3NVW B;  1N63 C;  5G5H B;  3S1D A;  3TX1 A;  5HMR A;  1DZN A;  1E0Y A;  3NVZ B;  1MBB A;  1N62 C;  2I0K A;  3DQ0 A;  2O3G A;  5AE1 A;  3PQB A;  1AHZ A;  4ML8 A;  4BCA A;  1JRP A;  5K8E A;  2P4P A;  3NVY B;  2QPM A;  4ZOH B;  4JB1 A;  3LAE A;  2VFV A;  2VFT A;  5ADZ A;  1DII A;  3AM9 A;  2W55 A;  2YVS A;  3RJA A;  4PZF A;  2OAI A;  2UUU A;  1WVE A;  2R2Z A;  2W54 A;  3NVV B;  4UD8 A;  1UXY A;  3JS8 A;  2WDW A;  2QKN A;  3S1E A;  1FO4 A;  2MBR A;  1ZXI C;  1FFU C;  2W3S A;  2R8D A;  1W1R A;  5FXE A;  4PYT A;  1N5X A;  4PVJ A;  1DIQ A;  1RM6 B;  4O95 A;  5I1V A;  2VFS A;  2AXR A;  3W8Z A;  3S1F A;  1JRO A;  4PVK A;  4PWC A;  2NQW A;  3AN1 A;  1T3Q C;  4XLO A;  1I19 A;  1N61 C;  4PVH A;  1W1O A;  3EUB 3;  2BVH A;  2VFR A;  1QLT A;  3NRZ B;  1HSK A;  1N60 C;  2UUV A;  2P13 A;  1FFV C;  3W8X A;  1E8G A;  5I1W A;  1N5W C;  3RJ8 A;  3ETR B;  4PVE A;  2VAO A;  3PM9 A;  4MLA A;  2EXR A;  1MBT A;  2Y08 A;  3D2H A;  1W1K A;  3FWA A;  3I99 A;  5D79 A;  2PLI A;  3C0P A;  1AHV A;  5G5G B;  4PWB A;  3SR6 B;  1V97 A;  4EC3 A;  2Y4G A;  1QLU A;  5FXD A;  2RK5 A;  1W1S A;  2Y3S A;  5AWV A;  2Q4W A;  1W1Q A;  1E8F A;  3W8W A;  4BC7 A;  3POP A;  3BW7 A;  1WVF A;  3LLB A;  3NS1 B;  3D2J A;  3D2D A;  3B9J B;  3TSH A;  1W1J A;  4OAL A;  2IPI A;  5AE2 A;  5HQX A;  2GQT A;  3FW8 A;  2BVG A;  1WYG A;  4BBY A;  2P3H A;  2Q85 A;  5L6G A;  1F0X A;  3TSJ A;  1VAO A;  5FXP A;  5AE3 A;  2GQU A;  2E3T A;  3KJM A;  3FW7 A;  1E8H A;  1AHU A;  3S1C A;  4HG0 A;  1W1L A;  4BC9 A;  3DED A;  1ZR6 A;  1FIQ B;  3FW9 A;  5HHZ A;  2W3R A;  3HSU A;  1SB3 B;  1W1M A;  4JAY A;  5FXF A;  1VDV A;  3AMZ A;  2Y3R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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