3FW9A

Structure of berberine bridge enzyme in complex with (s)-scoulerine
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
b'DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Reticuline oxidase
publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw9A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw9A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw9A03
2VFUA 1MBTA 3D2HA 1N61C 5K8EA 1ZR6A 3NS1B 4PVJA 3AMZA 1VDVA 1E8FA 1N5XA 1ZXIC 2MBRA 4EC3A 1UXYA 5AE3A 1T3QC 1E8HA 1FO4A 5AE2A 2IPIA 1N5WC 1W1LA 2WDWA 5I1VA 4BBYA 5HQXA 5AWVA 1JROA 1N63C 5HHZA 3GSYA 4ML8A 1W1OA 3BW7A 2VFSA 2Y3RA 5AE1A 5ADZA 5D79A 4O95A 1VAOA 1W1SA 1WYGA 5I1WA 4JB1A 1WVFA 2VFTA 3JS8A 4PYTA 4XLOA 5HMRA 2W3RA 3I99A 5FXEA 3TX1A 2Y3SA 3KJMA 5FXPA 1FFUC 1N60C 3TSJA 1HSKA 1E8GA 3D2DA 3S1FA 3FW7A 2EXRA 3TSHA 1QLTA 2Y08A 2W54A 3ETRB 4DNSA 2Q85A 4BCAA 4PVHA 3W8WA 3PQBA 1W1QA 2BVGA 2E3TA 2I0KA 2VFRA 3D2JA 3S1EA 3PM9A 4PVEA 4PWBA 2QKNA 4BC7A 1W1MA 3SR6B 1E0YA 3S1CA 2Q4WA 3POPA 3AM9A 4ZOHB 3FW8A 3RJAA 3AN1A 1DIQA 2VFVA 2GQTA 1WVEA 2AXRA 3FW9A 1W1RA 1V97A 1AHUA 3C0PA 3FWAA 3VTEA 3W8XA 1FFVC 2GQUA 2QPMA 1F0XA 1MBBA 3HSUA 4JAYA 5L6FA 2BVHA 4PZFA 2Y4GA 2W55A 3W8ZA 5L6GA 2VAOA 1QLUA 4UD8A 1DIIA 4PWCA 1I19A 4OALA 3S1DA 3DQ0A 3RJ8A 1FIQB 4PVKA 1W1JA 1W1KA 3NRZB 4BC9A 1DZNA 1AHVA 2W3SA 5FXDA 1N62C 4MLAA 3B9JB 3NVZB 5FXFA 2BVFA 1AHZA 3EUB3
chains in the Genus database with same CATH superfamily
2VFUA 1MBTA 3D2HA 1N61C 5K8EA 5G5GB 1ZR6A 3NS1B 2O3GA 4PVJA 2PLSA 3AMZA 1VDVA 1E8FA 1N5XA 1ZXIC 3EJDB 2MBRA 4EC3A 1UXYA 5AE3A 1T3QC 1E8HA 1FO4A 5AE2A 2IPIA 1N5WC 1W1LA 2WDWA 5I1VA 4BBYA 4HG0A 5HQXA 5AWVA 1JROA 1N63C 5HHZA 2YVSA 3LAEA 3GSYA 4ML8A 3NVVB 1W1OA 3BW7A 2VFSA 2UUVA 2Y3RA 5AE1A 5ADZA 2P3HA 5D79A 4O95A 2P13A 1VAOA 1W1SA 1WYGA 5I1WA 4JB1A 3LLBA 1WVFA 2VFTA 3JS8A 4PYTA 4XLOA 5HMRA 2W3RA 3I99A 5FXEA 3NVYB 3TX1A 2Y3SA 3KJMA 5FXPA 1FFUC 1N60C 3TSJA 1HSKA 1E8GA 3D2DA 3S1FA 3FW7A 2EXRA 3TSHA 1QLTA 2PLIA 2Y08A 3EJBB 2W54A 3ETRB 4DNSA 2Q85A 4BCAA 4PVHA 3W8WA 3DEDA 3PQBA 1W1QA 2BVGA 2E3TA 2I0KA 2VFRA 3D2JA 3S1EA 3PM9A 4PVEA 2P4PA 4PWBA 2QKNA 4BC7A 1W1MA 3SR6B 1E0YA 3S1CA 2Q4WA 3POPA 3AM9A 4ZOHB 3FW8A 3RJAA 3AN1A 1DIQA 2VFVA 2OAIA 2GQTA 1WVEA 2AXRA 3FW9A 1W1RA 1V97A 1AHUA 2UUUA 3C0PA 3FWAA 3VTEA 3W8XA 1FFVC 2R8DA 2GQUA 2QPMA 1F0XA 1MBBA 3HSUA 4JAYA 5L6FA 2BVHA 4PZFA 2Y4GA 2W55A 3W8ZA 5L6GA 2VAOA 2NQWA 1SB3B 1QLUA 2R2ZA 4UD8A 1DIIA 4PWCA 1I19A 3NVWB 4OALA 2RK5A 3S1DA 1JRPA 3DQ0A 3EJEB 3RJ8A 1FIQB 4PVKA 1W1JA 1W1KA 3NRZB 3HRDC 4BC9A 1DZNA 1AHVA 2W3SA 5G5HB 5FXDA 1N62C 4MLAA 1RM6B 3B9JB 3NVZB 5FXFA 2BVFA 1AHZA 3EUB3
chains in the Genus database with same CATH topology
2VFUA 1MBTA 3D2HA 1N61C 5K8EA 5G5GB 1ZR6A 3NS1B 2O3GA 4PVJA 2PLSA 3AMZA 1VDVA 1E8FA 1N5XA 1ZXIC 2MBRA 4EC3A 1UXYA 5AE3A 1T3QC 1E8HA 1FO4A 5AE2A 2IPIA 1N5WC 1W1LA 2WDWA 5I1VA 4BBYA 4HG0A 5HQXA 5AWVA 1JROA 1N63C 5HHZA 2YVSA 3LAEA 3GSYA 4ML8A 3NVVB 1W1OA 3BW7A 2VFSA 2UUVA 2Y3RA 5AE1A 5ADZA 2P3HA 5D79A 4O95A 2P13A 1VAOA 1W1SA 1WYGA 5I1WA 4JB1A 3LLBA 1WVFA 2VFTA 3JS8A 4PYTA 4XLOA 5HMRA 2W3RA 3I99A 5FXEA 3NVYB 3TX1A 2Y3SA 3KJMA 5FXPA 1FFUC 1N60C 3TSJA 1HSKA 1E8GA 3D2DA 3S1FA 3FW7A 2EXRA 3TSHA 1QLTA 2PLIA 2Y08A 2W54A 3ETRB 4DNSA 2Q85A 4BCAA 4PVHA 3W8WA 3DEDA 3PQBA 1W1QA 2BVGA 2E3TA 2I0KA 2VFRA 3D2JA 3S1EA 3PM9A 4PVEA 2P4PA 4PWBA 2QKNA 4BC7A 1W1MA 3SR6B 1E0YA 3S1CA 2Q4WA 3POPA 3AM9A 4ZOHB 3FW8A 3RJAA 3AN1A 1DIQA 2VFVA 2OAIA 2GQTA 1WVEA 2AXRA 3FW9A 1W1RA 1V97A 1AHUA 2UUUA 3C0PA 3FWAA 3VTEA 3W8XA 1FFVC 2R8DA 2GQUA 2QPMA 1F0XA 1MBBA 3HSUA 4JAYA 5L6FA 2BVHA 4PZFA 2Y4GA 2W55A 3W8ZA 5L6GA 2VAOA 2NQWA 1SB3B 1QLUA 2R2ZA 4UD8A 1DIIA 4PWCA 1I19A 3NVWB 4OALA 2RK5A 3S1DA 1JRPA 3DQ0A 3RJ8A 1FIQB 4PVKA 1W1JA 1W1KA 3NRZB 3HRDC 4BC9A 1DZNA 1AHVA 2W3SA 5G5HB 5FXDA 1N62C 4MLAA 1RM6B 3B9JB 3NVZB 5FXFA 2BVFA 1AHZA 3EUB3
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFU A;  1MBT A;  3D2H A;  1N61 C;  5K8E A;  1ZR6 A;  3NS1 B;  4PVJ A;  3AMZ A;  1VDV A;  1E8F A;  1N5X A;  1ZXI C;  2MBR A;  4EC3 A;  1UXY A;  5AE3 A;  1T3Q C;  1E8H A;  1FO4 A;  5AE2 A;  2IPI A;  1N5W C;  1W1L A;  2WDW A;  5I1V A;  4BBY A;  5HQX A;  5AWV A;  1JRO A;  1N63 C;  5HHZ A;  3GSY A;  4ML8 A;  1W1O A;  3BW7 A;  2VFS A;  2Y3R A;  5AE1 A;  5ADZ A;  5D79 A;  4O95 A;  1VAO A;  1W1S A;  1WYG A;  5I1W A;  4JB1 A;  1WVF A;  2VFT A;  3JS8 A;  4PYT A;  4XLO A;  5HMR A;  2W3R A;  3I99 A;  5FXE A;  3TX1 A;  2Y3S A;  3KJM A;  5FXP A;  1FFU C;  1N60 C;  3TSJ A;  1HSK A;  1E8G A;  3D2D A;  3S1F A;  3FW7 A;  2EXR A;  3TSH A;  1QLT A;  2Y08 A;  2W54 A;  3ETR B;  4DNS A;  2Q85 A;  4BCA A;  4PVH A;  3W8W A;  3PQB A;  1W1Q A;  2BVG A;  2E3T A;  2I0K A;  2VFR A;  3D2J A;  3S1E A;  3PM9 A;  4PVE A;  4PWB A;  2QKN A;  4BC7 A;  1W1M A;  3SR6 B;  1E0Y A;  3S1C A;  2Q4W A;  3POP A;  3AM9 A;  4ZOH B;  3FW8 A;  3RJA A;  3AN1 A;  1DIQ A;  2VFV A;  2GQT A;  1WVE A;  2AXR A;  3FW9 A;  1W1R A;  1V97 A;  1AHU A;  3C0P A;  3FWA A;  3VTE A;  3W8X A;  1FFV C;  2GQU A;  2QPM A;  1F0X A;  1MBB A;  3HSU A;  4JAY A;  5L6F A;  2BVH A;  4PZF A;  2Y4G A;  2W55 A;  3W8Z A;  5L6G A;  2VAO A;  1QLU A;  4UD8 A;  1DII A;  4PWC A;  1I19 A;  4OAL A;  3S1D A;  3DQ0 A;  3RJ8 A;  1FIQ B;  4PVK A;  1W1J A;  1W1K A;  3NRZ B;  4BC9 A;  1DZN A;  1AHV A;  2W3S A;  5FXD A;  1N62 C;  4MLA A;  3B9J B;  3NVZ B;  5FXF A;  2BVF A;  1AHZ A;  3EUB 3; 
#chains in the Genus database with same CATH topology
 2VFU A;  1MBT A;  3D2H A;  1N61 C;  5K8E A;  5G5G B;  1ZR6 A;  3NS1 B;  2O3G A;  4PVJ A;  2PLS A;  3AMZ A;  1VDV A;  1E8F A;  1N5X A;  1ZXI C;  3EJD B;  2MBR A;  4EC3 A;  1UXY A;  5AE3 A;  1T3Q C;  1E8H A;  1FO4 A;  5AE2 A;  2IPI A;  1N5W C;  1W1L A;  2WDW A;  5I1V A;  4BBY A;  4HG0 A;  5HQX A;  5AWV A;  1JRO A;  1N63 C;  5HHZ A;  2YVS A;  3LAE A;  3GSY A;  4ML8 A;  3NVV B;  1W1O A;  3BW7 A;  2VFS A;  2UUV A;  2Y3R A;  5AE1 A;  5ADZ A;  2P3H A;  5D79 A;  4O95 A;  2P13 A;  1VAO A;  1W1S A;  1WYG A;  5I1W A;  4JB1 A;  3LLB A;  1WVF A;  2VFT A;  3JS8 A;  4PYT A;  4XLO A;  5HMR A;  2W3R A;  3I99 A;  5FXE A;  3NVY B;  3TX1 A;  2Y3S A;  3KJM A;  5FXP A;  1FFU C;  1N60 C;  3TSJ A;  1HSK A;  1E8G A;  3D2D A;  3S1F A;  3FW7 A;  2EXR A;  3TSH A;  1QLT A;  2PLI A;  2Y08 A;  3EJB B;  2W54 A;  3ETR B;  4DNS A;  2Q85 A;  4BCA A;  4PVH A;  3W8W A;  3DED A;  3PQB A;  1W1Q A;  2BVG A;  2E3T A;  2I0K A;  2VFR A;  3D2J A;  3S1E A;  3PM9 A;  4PVE A;  2P4P A;  4PWB A;  2QKN A;  4BC7 A;  1W1M A;  3SR6 B;  1E0Y A;  3S1C A;  2Q4W A;  3POP A;  3AM9 A;  4ZOH B;  3FW8 A;  3RJA A;  3AN1 A;  1DIQ A;  2VFV A;  2OAI A;  2GQT A;  1WVE A;  2AXR A;  3FW9 A;  1W1R A;  1V97 A;  1AHU A;  2UUU A;  3C0P A;  3FWA A;  3VTE A;  3W8X A;  1FFV C;  2R8D A;  2GQU A;  2QPM A;  1F0X A;  1MBB A;  3HSU A;  4JAY A;  5L6F A;  2BVH A;  4PZF A;  2Y4G A;  2W55 A;  3W8Z A;  5L6G A;  2VAO A;  2NQW A;  1SB3 B;  1QLU A;  2R2Z A;  4UD8 A;  1DII A;  4PWC A;  1I19 A;  3NVW B;  4OAL A;  2RK5 A;  3S1D A;  1JRP A;  3DQ0 A;  3EJE B;  3RJ8 A;  1FIQ B;  4PVK A;  1W1J A;  1W1K A;  3NRZ B;  3HRD C;  4BC9 A;  1DZN A;  1AHV A;  2W3S A;  5G5H B;  5FXD A;  1N62 C;  4MLA A;  1RM6 B;  3B9J B;  3NVZ B;  5FXF A;  2BVF A;  1AHZ A;  3EUB 3; 
#chains in the Genus database with same CATH homology
 2VFU A;  1MBT A;  3D2H A;  1N61 C;  5K8E A;  5G5G B;  1ZR6 A;  3NS1 B;  2O3G A;  4PVJ A;  2PLS A;  3AMZ A;  1VDV A;  1E8F A;  1N5X A;  1ZXI C;  2MBR A;  4EC3 A;  1UXY A;  5AE3 A;  1T3Q C;  1E8H A;  1FO4 A;  5AE2 A;  2IPI A;  1N5W C;  1W1L A;  2WDW A;  5I1V A;  4BBY A;  4HG0 A;  5HQX A;  5AWV A;  1JRO A;  1N63 C;  5HHZ A;  2YVS A;  3LAE A;  3GSY A;  4ML8 A;  3NVV B;  1W1O A;  3BW7 A;  2VFS A;  2UUV A;  2Y3R A;  5AE1 A;  5ADZ A;  2P3H A;  5D79 A;  4O95 A;  2P13 A;  1VAO A;  1W1S A;  1WYG A;  5I1W A;  4JB1 A;  3LLB A;  1WVF A;  2VFT A;  3JS8 A;  4PYT A;  4XLO A;  5HMR A;  2W3R A;  3I99 A;  5FXE A;  3NVY B;  3TX1 A;  2Y3S A;  3KJM A;  5FXP A;  1FFU C;  1N60 C;  3TSJ A;  1HSK A;  1E8G A;  3D2D A;  3S1F A;  3FW7 A;  2EXR A;  3TSH A;  1QLT A;  2PLI A;  2Y08 A;  2W54 A;  3ETR B;  4DNS A;  2Q85 A;  4BCA A;  4PVH A;  3W8W A;  3DED A;  3PQB A;  1W1Q A;  2BVG A;  2E3T A;  2I0K A;  2VFR A;  3D2J A;  3S1E A;  3PM9 A;  4PVE A;  2P4P A;  4PWB A;  2QKN A;  4BC7 A;  1W1M A;  3SR6 B;  1E0Y A;  3S1C A;  2Q4W A;  3POP A;  3AM9 A;  4ZOH B;  3FW8 A;  3RJA A;  3AN1 A;  1DIQ A;  2VFV A;  2OAI A;  2GQT A;  1WVE A;  2AXR A;  3FW9 A;  1W1R A;  1V97 A;  1AHU A;  2UUU A;  3C0P A;  3FWA A;  3VTE A;  3W8X A;  1FFV C;  2R8D A;  2GQU A;  2QPM A;  1F0X A;  1MBB A;  3HSU A;  4JAY A;  5L6F A;  2BVH A;  4PZF A;  2Y4G A;  2W55 A;  3W8Z A;  5L6G A;  2VAO A;  2NQW A;  1SB3 B;  1QLU A;  2R2Z A;  4UD8 A;  1DII A;  4PWC A;  1I19 A;  3NVW B;  4OAL A;  2RK5 A;  3S1D A;  1JRP A;  3DQ0 A;  3RJ8 A;  1FIQ B;  4PVK A;  1W1J A;  1W1K A;  3NRZ B;  3HRD C;  4BC9 A;  1DZN A;  1AHV A;  2W3S A;  5G5H B;  5FXD A;  1N62 C;  4MLA A;  1RM6 B;  3B9J B;  3NVZ B;  5FXF A;  2BVF A;  1AHZ A;  3EUB 3; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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