3FW9A

Structure of berberine bridge enzyme in complex with (s)-scoulerine
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
495
structure length
495
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural roles of biocovalent flaninylation in berberine bridge enzyme
rcsb
source organism Eschscholzia californica
molecule tags Flavoprotein
molecule keywords Reticuline oxidase
total genus 169
structure length 495
sequence length 495
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3fw9A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3fw9A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3fw9A03
4BC9A 3W8WA 3TX1A 5I1VA 1QLUA 4BC7A 1W1LA 3S1FA 5FXEA 3ETRB 2WDWA 5L6GA 1FIQB 3FWAA 3AM9A 1T3QC 1WYGA 1N60C 5AWVA 1I19A 1FO4A 2EXRA 4PWBA 2BVGA 1W1SA 3FW7A 1E8FA 2MBRA 4JB1A 3EUB3 4BCAA 5AE2A 3FW9A 3FW8A 1N62C 1N5WC 3W8XA 3I99A 5I1WA 2E3TA 1MBBA 3W8ZA 1MBTA 4ML8A 3POPA 4PWCA 3D2DA 4XLOA 5HMRA 2Q85A 1V97A 5FXDA 3RJAA 2Y4GA 1E8GA 1WVFA 1WVEA 5HQXA 2QKNA 5L6FA 1QLTA 4BBYA 2QPMA 4PVEA 2BVFA 1W1MA 3AN1A 1FFUC 1AHZA 4UD8A 2AXRA 1W1JA 2VFSA 3HSUA 3RJ8A 1AHVA 1E8HA 2VFUA 1AHUA 4PVJA 2VFVA 4EC3A 1W1QA 5ADZA 1HSKA 1VAOA 5HHZA 3JS8A 2W55A 3C0PA 3SR6B 4ZOHB 3BW7A 3GSYA 2VFRA 4OALA 3PM9A 5D79A 5FXPA 4JAYA 2BVHA 2Y08A 2GQTA 3NVZB 2Y3SA 2W3SA 3D2HA 3PQBA 3D2JA 2Y3RA 1N61C 1DZNA 3B9JB 5FXFA 4O95A 1FFVC 3NS1B 3TSJA 2I0KA 1ZR6A 4PYTA 3DQ0A 4PVHA 3VTEA 1ZXIC 3KJMA 4PVKA 1W1OA 2W3RA 5AE3A 5K8EA 2VFTA 1UXYA 3AMZA 2GQUA 3S1EA 3S1CA 1DIQA 1F0XA 3S1DA 1W1KA 3TSHA 1N63C 1VDVA 1N5XA 5AE1A 4MLAA 1JROA 2VAOA 1E0YA 1W1RA 4PZFA 2IPIA 2Q4WA 1DIIA 3NRZB 4DNSA 2W54A
chains in the Genus database with same CATH superfamily
4BC9A 3W8WA 3TX1A 5G5HB 5I1VA 1QLUA 3EJEB 4BC7A 1W1LA 3S1FA 5FXEA 3ETRB 2WDWA 5L6GA 1FIQB 3FWAA 3AM9A 1T3QC 1WYGA 1N60C 5AWVA 1I19A 1FO4A 2EXRA 4PWBA 2BVGA 1W1SA 2MBRA 1E8FA 3FW7A 1SB3B 4JB1A 3EUB3 4BCAA 5AE2A 3FW9A 3FW8A 1N62C 1N5WC 3W8XA 3I99A 5I1WA 3DEDA 2E3TA 1MBBA 3NVVB 3W8ZA 1MBTA 4ML8A 2O3GA 3POPA 4PWCA 3D2DA 4XLOA 5HMRA 2Q85A 1V97A 5FXDA 3RJAA 2Y4GA 1E8GA 1WVFA 1WVEA 5HQXA 2QKNA 5L6FA 1QLTA 4BBYA 2YVSA 2QPMA 1RM6B 2PLIA 3LAEA 4PVEA 3LLBA 3EJBB 2R8DA 2BVFA 1W1MA 3AN1A 1FFUC 2P3HA 1AHZA 4UD8A 2RK5A 2AXRA 1W1JA 2VFSA 3HSUA 3RJ8A 1AHVA 1E8HA 2VFUA 2UUVA 1AHUA 4PVJA 2VFVA 4EC3A 1W1QA 5ADZA 1HSKA 1VAOA 5HHZA 3JS8A 2W55A 3C0PA 3SR6B 4ZOHB 3BW7A 3GSYA 2VFRA 4OALA 3PM9A 5D79A 5FXPA 4JAYA 2BVHA 2Y08A 2GQTA 3NVZB 3NVWB 2W3SA 3D2HA 2Y3SA 3PQBA 3D2JA 2Y3RA 3HRDC 1N61C 1DZNA 3B9JB 5FXFA 4O95A 1FFVC 3NS1B 3TSJA 2I0KA 2UUUA 2R2ZA 1ZR6A 4PYTA 3DQ0A 4PVHA 5G5GB 3VTEA 1ZXIC 3KJMA 4PVKA 2NQWA 2P4PA 1W1OA 2W3RA 3EJDB 5AE3A 2VFTA 5K8EA 1UXYA 3AMZA 2GQUA 3S1EA 3S1CA 1DIQA 1F0XA 3S1DA 1JRPA 1W1KA 3TSHA 1N63C 2OAIA 1VDVA 1N5XA 5AE1A 2PLSA 4MLAA 1JROA 2VAOA 1E0YA 1W1RA 4PZFA 2P13A 2IPIA 3NVYB 4HG0A 2Q4WA 1DIIA 3NRZB 4DNSA 2W54A
chains in the Genus database with same CATH topology
4BC9A 3W8WA 3TX1A 5G5HB 5I1VA 1QLUA 4BC7A 1W1LA 3S1FA 5FXEA 3ETRB 2WDWA 5L6GA 1FIQB 3FWAA 3AM9A 1T3QC 1WYGA 1N60C 5AWVA 1I19A 1FO4A 2EXRA 4PWBA 2BVGA 1W1SA 3FW7A 1E8FA 2MBRA 1SB3B 4JB1A 3EUB3 4BCAA 5AE2A 3FW9A 3FW8A 1N62C 1N5WC 3W8XA 3I99A 5I1WA 3DEDA 2E3TA 1MBBA 3W8ZA 3NVVB 1MBTA 4ML8A 2O3GA 3POPA 4PWCA 3D2DA 4XLOA 5HMRA 2Q85A 1V97A 5FXDA 3RJAA 2Y4GA 1E8GA 1WVFA 1WVEA 5HQXA 2QKNA 5L6FA 1QLTA 4BBYA 2YVSA 2QPMA 1RM6B 2PLIA 3LAEA 4PVEA 3LLBA 2R8DA 2BVFA 1W1MA 3AN1A 1FFUC 2P3HA 1AHZA 4UD8A 2RK5A 2AXRA 1W1JA 2VFSA 3HSUA 3RJ8A 1AHVA 1E8HA 2VFUA 2UUVA 1AHUA 4PVJA 2VFVA 4EC3A 1W1QA 5ADZA 1HSKA 1VAOA 5HHZA 3JS8A 2W55A 3C0PA 3SR6B 4ZOHB 3BW7A 3GSYA 2VFRA 4OALA 3PM9A 5D79A 5FXPA 4JAYA 2BVHA 2Y08A 2GQTA 3NVZB 2Y3SA 2W3SA 3D2HA 3NVWB 3PQBA 3D2JA 2Y3RA 3HRDC 1N61C 1DZNA 3B9JB 5FXFA 4O95A 1FFVC 3NS1B 3TSJA 2I0KA 2UUUA 2R2ZA 1ZR6A 4PYTA 3DQ0A 4PVHA 5G5GB 3VTEA 1ZXIC 3KJMA 4PVKA 2NQWA 2P4PA 1W1OA 2W3RA 5AE3A 5K8EA 2VFTA 1UXYA 3AMZA 2GQUA 3S1EA 3S1CA 1DIQA 1F0XA 3S1DA 1JRPA 1W1KA 3TSHA 1N63C 2OAIA 1VDVA 1N5XA 5AE1A 2PLSA 4MLAA 1JROA 2VAOA 1E0YA 1W1RA 4PZFA 2P13A 2IPIA 3NVYB 4HG0A 2Q4WA 1DIIA 3NRZB 4DNSA 2W54A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BC9 A;  3W8W A;  3TX1 A;  5I1V A;  1QLU A;  4BC7 A;  1W1L A;  3S1F A;  5FXE A;  3ETR B;  2WDW A;  5L6G A;  1FIQ B;  3FWA A;  3AM9 A;  1T3Q C;  1WYG A;  1N60 C;  5AWV A;  1I19 A;  1FO4 A;  2EXR A;  4PWB A;  2BVG A;  1W1S A;  3FW7 A;  1E8F A;  2MBR A;  4JB1 A;  3EUB 3;  4BCA A;  5AE2 A;  3FW9 A;  3FW8 A;  1N62 C;  1N5W C;  3W8X A;  3I99 A;  5I1W A;  2E3T A;  1MBB A;  3W8Z A;  1MBT A;  4ML8 A;  3POP A;  4PWC A;  3D2D A;  4XLO A;  5HMR A;  2Q85 A;  1V97 A;  5FXD A;  3RJA A;  2Y4G A;  1E8G A;  1WVF A;  1WVE A;  5HQX A;  2QKN A;  5L6F A;  1QLT A;  4BBY A;  2QPM A;  4PVE A;  2BVF A;  1W1M A;  3AN1 A;  1FFU C;  1AHZ A;  4UD8 A;  2AXR A;  1W1J A;  2VFS A;  3HSU A;  3RJ8 A;  1AHV A;  1E8H A;  2VFU A;  1AHU A;  4PVJ A;  2VFV A;  4EC3 A;  1W1Q A;  5ADZ A;  1HSK A;  1VAO A;  5HHZ A;  3JS8 A;  2W55 A;  3C0P A;  3SR6 B;  4ZOH B;  3BW7 A;  3GSY A;  2VFR A;  4OAL A;  3PM9 A;  5D79 A;  5FXP A;  4JAY A;  2BVH A;  2Y08 A;  2GQT A;  3NVZ B;  2Y3S A;  2W3S A;  3D2H A;  3PQB A;  3D2J A;  2Y3R A;  1N61 C;  1DZN A;  3B9J B;  5FXF A;  4O95 A;  1FFV C;  3NS1 B;  3TSJ A;  2I0K A;  1ZR6 A;  4PYT A;  3DQ0 A;  4PVH A;  3VTE A;  1ZXI C;  3KJM A;  4PVK A;  1W1O A;  2W3R A;  5AE3 A;  5K8E A;  2VFT A;  1UXY A;  3AMZ A;  2GQU A;  3S1E A;  3S1C A;  1DIQ A;  1F0X A;  3S1D A;  1W1K A;  3TSH A;  1N63 C;  1VDV A;  1N5X A;  5AE1 A;  4MLA A;  1JRO A;  2VAO A;  1E0Y A;  1W1R A;  4PZF A;  2IPI A;  2Q4W A;  1DII A;  3NRZ B;  4DNS A;  2W54 A; 
#chains in the Genus database with same CATH topology
 4BC9 A;  3W8W A;  3TX1 A;  5G5H B;  5I1V A;  1QLU A;  3EJE B;  4BC7 A;  1W1L A;  3S1F A;  5FXE A;  3ETR B;  2WDW A;  5L6G A;  1FIQ B;  3FWA A;  3AM9 A;  1T3Q C;  1WYG A;  1N60 C;  5AWV A;  1I19 A;  1FO4 A;  2EXR A;  4PWB A;  2BVG A;  1W1S A;  2MBR A;  1E8F A;  3FW7 A;  1SB3 B;  4JB1 A;  3EUB 3;  4BCA A;  5AE2 A;  3FW9 A;  3FW8 A;  1N62 C;  1N5W C;  3W8X A;  3I99 A;  5I1W A;  3DED A;  2E3T A;  1MBB A;  3NVV B;  3W8Z A;  1MBT A;  4ML8 A;  2O3G A;  3POP A;  4PWC A;  3D2D A;  4XLO A;  5HMR A;  2Q85 A;  1V97 A;  5FXD A;  3RJA A;  2Y4G A;  1E8G A;  1WVF A;  1WVE A;  5HQX A;  2QKN A;  5L6F A;  1QLT A;  4BBY A;  2YVS A;  2QPM A;  1RM6 B;  2PLI A;  3LAE A;  4PVE A;  3LLB A;  3EJB B;  2R8D A;  2BVF A;  1W1M A;  3AN1 A;  1FFU C;  2P3H A;  1AHZ A;  4UD8 A;  2RK5 A;  2AXR A;  1W1J A;  2VFS A;  3HSU A;  3RJ8 A;  1AHV A;  1E8H A;  2VFU A;  2UUV A;  1AHU A;  4PVJ A;  2VFV A;  4EC3 A;  1W1Q A;  5ADZ A;  1HSK A;  1VAO A;  5HHZ A;  3JS8 A;  2W55 A;  3C0P A;  3SR6 B;  4ZOH B;  3BW7 A;  3GSY A;  2VFR A;  4OAL A;  3PM9 A;  5D79 A;  5FXP A;  4JAY A;  2BVH A;  2Y08 A;  2GQT A;  3NVZ B;  3NVW B;  2W3S A;  3D2H A;  2Y3S A;  3PQB A;  3D2J A;  2Y3R A;  3HRD C;  1N61 C;  1DZN A;  3B9J B;  5FXF A;  4O95 A;  1FFV C;  3NS1 B;  3TSJ A;  2I0K A;  2UUU A;  2R2Z A;  1ZR6 A;  4PYT A;  3DQ0 A;  4PVH A;  5G5G B;  3VTE A;  1ZXI C;  3KJM A;  4PVK A;  2NQW A;  2P4P A;  1W1O A;  2W3R A;  3EJD B;  5AE3 A;  2VFT A;  5K8E A;  1UXY A;  3AMZ A;  2GQU A;  3S1E A;  3S1C A;  1DIQ A;  1F0X A;  3S1D A;  1JRP A;  1W1K A;  3TSH A;  1N63 C;  2OAI A;  1VDV A;  1N5X A;  5AE1 A;  2PLS A;  4MLA A;  1JRO A;  2VAO A;  1E0Y A;  1W1R A;  4PZF A;  2P13 A;  2IPI A;  3NVY B;  4HG0 A;  2Q4W A;  1DII A;  3NRZ B;  4DNS A;  2W54 A; 
#chains in the Genus database with same CATH homology
 4BC9 A;  3W8W A;  3TX1 A;  5G5H B;  5I1V A;  1QLU A;  4BC7 A;  1W1L A;  3S1F A;  5FXE A;  3ETR B;  2WDW A;  5L6G A;  1FIQ B;  3FWA A;  3AM9 A;  1T3Q C;  1WYG A;  1N60 C;  5AWV A;  1I19 A;  1FO4 A;  2EXR A;  4PWB A;  2BVG A;  1W1S A;  3FW7 A;  1E8F A;  2MBR A;  1SB3 B;  4JB1 A;  3EUB 3;  4BCA A;  5AE2 A;  3FW9 A;  3FW8 A;  1N62 C;  1N5W C;  3W8X A;  3I99 A;  5I1W A;  3DED A;  2E3T A;  1MBB A;  3W8Z A;  3NVV B;  1MBT A;  4ML8 A;  2O3G A;  3POP A;  4PWC A;  3D2D A;  4XLO A;  5HMR A;  2Q85 A;  1V97 A;  5FXD A;  3RJA A;  2Y4G A;  1E8G A;  1WVF A;  1WVE A;  5HQX A;  2QKN A;  5L6F A;  1QLT A;  4BBY A;  2YVS A;  2QPM A;  1RM6 B;  2PLI A;  3LAE A;  4PVE A;  3LLB A;  2R8D A;  2BVF A;  1W1M A;  3AN1 A;  1FFU C;  2P3H A;  1AHZ A;  4UD8 A;  2RK5 A;  2AXR A;  1W1J A;  2VFS A;  3HSU A;  3RJ8 A;  1AHV A;  1E8H A;  2VFU A;  2UUV A;  1AHU A;  4PVJ A;  2VFV A;  4EC3 A;  1W1Q A;  5ADZ A;  1HSK A;  1VAO A;  5HHZ A;  3JS8 A;  2W55 A;  3C0P A;  3SR6 B;  4ZOH B;  3BW7 A;  3GSY A;  2VFR A;  4OAL A;  3PM9 A;  5D79 A;  5FXP A;  4JAY A;  2BVH A;  2Y08 A;  2GQT A;  3NVZ B;  2Y3S A;  2W3S A;  3D2H A;  3NVW B;  3PQB A;  3D2J A;  2Y3R A;  3HRD C;  1N61 C;  1DZN A;  3B9J B;  5FXF A;  4O95 A;  1FFV C;  3NS1 B;  3TSJ A;  2I0K A;  2UUU A;  2R2Z A;  1ZR6 A;  4PYT A;  3DQ0 A;  4PVH A;  5G5G B;  3VTE A;  1ZXI C;  3KJM A;  4PVK A;  2NQW A;  2P4P A;  1W1O A;  2W3R A;  5AE3 A;  5K8E A;  2VFT A;  1UXY A;  3AMZ A;  2GQU A;  3S1E A;  3S1C A;  1DIQ A;  1F0X A;  3S1D A;  1JRP A;  1W1K A;  3TSH A;  1N63 C;  2OAI A;  1VDV A;  1N5X A;  5AE1 A;  2PLS A;  4MLA A;  1JRO A;  2VAO A;  1E0Y A;  1W1R A;  4PZF A;  2P13 A;  2IPI A;  3NVY B;  4HG0 A;  2Q4W A;  1DII A;  3NRZ B;  4DNS A;  2W54 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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