3C0PA

Maize cytokinin oxidase/dehydrogenase complexed with the allenic cytokinin analog ha-8
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism-based inhibitors of cytokinin oxidase/dehydrogenase attack FAD cofactor
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 167
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3c0pA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3c0pA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3c0pA03
3JS8A 1DIQA 1F0XA 1I19A 1V97A 5AE3A 1N5WC 5HHZA 2W55A 2VFVA 3NVWB 2W3RA 4PWBA 4ZOHB 3B9JB 1ZR6A 1WYGA 2PLIA 1W1JA 4ML8A 3S1DA 2RK5A 2O3GA 3DEDA 1W1MA 3W8ZA 2W54A 3C0PA 2VFSA 1N61C 4PYTA 4PVJA 4OALA 5FXDA 3LLBA 3AM9A 3NVYB 2W3SA 1QLTA 4PWCA 3FW8A 1W1KA 3NS1B 2MBRA 4EC3A 1MBTA 2AXRA 5G5GB 3HRDC 1E8FA 2P3HA 5AE2A 3FW7A 1DIIA 1DZNA 5HQXA 1N5XA 4PVHA 2NQWA 4JB1A 3ETRB 1N60C 1JRPA 5HMRA 2R8DA 2E3TA 3PM9A 3FW9A 3TSHA 2VFRA 3D2HA 4BC9A 1WVFA 4PVKA 3GSYA 3D2JA 3W8WA 1JROA 2OAIA 5FXFA 1N63C 1AHVA 1HSKA 3LAEA 3SR6B 4BBYA 1W1OA 3FWAA 1AHZA 1E8GA 3AMZA 3BW7A 2BVGA 3AN1A 3I99A 1E0YA 1N62C 5AE1A 2R2ZA 1W1RA 1W1SA 2VFUA 1W1LA 3EUB3 3S1FA 1E8HA 5FXEA 3S1EA 2P13A 1ZXIC 2YVSA 2Q85A 4HG0A 5D79A 3VTEA 3NRZB 5G5HB 1RM6B 4O95A 2QKNA 1FO4A 2GQTA 4BC7A 5FXPA 1W1QA 1AHUA 1VAOA 3KJMA 1MBBA 3DQ0A 3NVVB 2I0KA 3NVZB 4BCAA 3S1CA 1WVEA 1FFUC 2BVHA 1FIQB 1QLUA 1T3QC 1FFVC 2BVFA 2GQUA 2Q4WA 3TX1A 4DNSA 4JAYA 2QPMA 4PVEA 2PLSA 5ADZA 2EXRA 3D2DA 3TSJA 3W8XA 2VAOA 4PZFA 4MLAA 4XLOA 1UXYA 2VFTA 2P4PA 1SB3B 4UD8A 1VDVA
chains in the Genus database with same CATH superfamily
3JS8A 1DIQA 5L6FA 1F0XA 1I19A 1V97A 5AE3A 3EJDB 1N5WC 5HHZA 2W55A 2VFVA 3NVWB 2W3RA 4PWBA 4ZOHB 3B9JB 1ZR6A 1WYGA 2Y4GA 5K8EA 2PLIA 1W1JA 2UUUA 4ML8A 3S1DA 2RK5A 2O3GA 3DEDA 5I1WA 1W1MA 3W8ZA 2W54A 3C0PA 2VFSA 1N61C 4PYTA 3PQBA 4PVJA 4OALA 5FXDA 3LLBA 3AM9A 3NVYB 2W3SA 1QLTA 3EJBB 4PWCA 3FW8A 1W1KA 3NS1B 2MBRA 3RJ8A 3EJEB 4EC3A 1MBTA 2AXRA 5G5GB 3HRDC 1E8FA 2P3HA 5AE2A 3FW7A 1DIIA 1DZNA 5HQXA 1N5XA 4PVHA 2NQWA 2Y3RA 4JB1A 2Y08A 3ETRB 1N60C 1JRPA 5HMRA 2R8DA 2E3TA 5I1VA 3PM9A 3FW9A 3TSHA 2VFRA 3D2HA 4BC9A 1WVFA 4PVKA 3GSYA 3D2JA 3W8WA 1JROA 2OAIA 5FXFA 1N63C 1AHVA 1HSKA 3LAEA 3POPA 3SR6B 4BBYA 1W1OA 3FWAA 1AHZA 1E8GA 3AMZA 3BW7A 2BVGA 3AN1A 3I99A 1E0YA 1N62C 5AE1A 2R2ZA 3RJAA 2WDWA 1W1RA 1W1SA 2VFUA 1W1LA 3EUB3 3S1FA 1E8HA 5FXEA 3S1EA 2P13A 1ZXIC 2YVSA 2Q85A 4HG0A 5D79A 3VTEA 3NRZB 5G5HB 1RM6B 4O95A 2QKNA 1FO4A 2GQTA 2Y3SA 2UUVA 4BC7A 5FXPA 1W1QA 1AHUA 1VAOA 3KJMA 1MBBA 3DQ0A 3NVVB 2I0KA 3NVZB 4BCAA 2IPIA 3S1CA 1WVEA 1FFUC 2BVHA 1FIQB 1QLUA 1T3QC 1FFVC 2BVFA 5L6GA 2GQUA 2Q4WA 3TX1A 4DNSA 5AWVA 4JAYA 3HSUA 2QPMA 4PVEA 2PLSA 5ADZA 2EXRA 3D2DA 3TSJA 3W8XA 2VAOA 4PZFA 4MLAA 4XLOA 1UXYA 2VFTA 2P4PA 1SB3B 4UD8A 1VDVA
chains in the Genus database with same CATH topology
3JS8A 1DIQA 5L6FA 1F0XA 1I19A 1V97A 5AE3A 1N5WC 5HHZA 2W55A 2VFVA 3NVWB 2W3RA 4PWBA 4ZOHB 3B9JB 1ZR6A 1WYGA 2Y4GA 5K8EA 2PLIA 1W1JA 2UUUA 4ML8A 3S1DA 2RK5A 2O3GA 3DEDA 5I1WA 1W1MA 3W8ZA 2W54A 3C0PA 2VFSA 1N61C 4PYTA 3PQBA 4PVJA 4OALA 5FXDA 3LLBA 3AM9A 3NVYB 2W3SA 1QLTA 4PWCA 3FW8A 1W1KA 3NS1B 2MBRA 3RJ8A 4EC3A 1MBTA 2AXRA 5G5GB 3HRDC 1E8FA 2P3HA 5AE2A 3FW7A 1DIIA 1DZNA 5HQXA 1N5XA 4PVHA 2NQWA 2Y3RA 4JB1A 2Y08A 3ETRB 1N60C 1JRPA 5HMRA 2R8DA 2E3TA 5I1VA 3PM9A 3FW9A 3TSHA 2VFRA 3D2HA 4BC9A 1WVFA 4PVKA 3GSYA 3D2JA 3W8WA 1JROA 2OAIA 5FXFA 1N63C 1AHVA 1HSKA 3LAEA 3POPA 3SR6B 4BBYA 1W1OA 3FWAA 1AHZA 1E8GA 3AMZA 3BW7A 2BVGA 3AN1A 3I99A 1E0YA 1N62C 5AE1A 2R2ZA 3RJAA 2WDWA 1W1RA 1W1SA 2VFUA 1W1LA 3EUB3 3S1FA 1E8HA 5FXEA 3S1EA 2P13A 1ZXIC 2YVSA 2Q85A 4HG0A 5D79A 3VTEA 3NRZB 5G5HB 1RM6B 4O95A 2QKNA 1FO4A 2GQTA 2Y3SA 2UUVA 4BC7A 5FXPA 1W1QA 1AHUA 1VAOA 3KJMA 1MBBA 3DQ0A 3NVVB 2I0KA 3NVZB 4BCAA 2IPIA 3S1CA 1WVEA 1FFUC 2BVHA 1FIQB 1QLUA 1T3QC 1FFVC 2BVFA 5L6GA 2GQUA 2Q4WA 3TX1A 4DNSA 5AWVA 4JAYA 3HSUA 2QPMA 4PVEA 2PLSA 5ADZA 2EXRA 3D2DA 3TSJA 3W8XA 2VAOA 4PZFA 4MLAA 4XLOA 1UXYA 2VFTA 2P4PA 1SB3B 4UD8A 1VDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JS8 A;  1DIQ A;  1F0X A;  1I19 A;  1V97 A;  5AE3 A;  1N5W C;  5HHZ A;  2W55 A;  2VFV A;  3NVW B;  2W3R A;  4PWB A;  4ZOH B;  3B9J B;  1ZR6 A;  1WYG A;  2PLI A;  1W1J A;  4ML8 A;  3S1D A;  2RK5 A;  2O3G A;  3DED A;  1W1M A;  3W8Z A;  2W54 A;  3C0P A;  2VFS A;  1N61 C;  4PYT A;  4PVJ A;  4OAL A;  5FXD A;  3LLB A;  3AM9 A;  3NVY B;  2W3S A;  1QLT A;  4PWC A;  3FW8 A;  1W1K A;  3NS1 B;  2MBR A;  4EC3 A;  1MBT A;  2AXR A;  5G5G B;  3HRD C;  1E8F A;  2P3H A;  5AE2 A;  3FW7 A;  1DII A;  1DZN A;  5HQX A;  1N5X A;  4PVH A;  2NQW A;  4JB1 A;  3ETR B;  1N60 C;  1JRP A;  5HMR A;  2R8D A;  2E3T A;  3PM9 A;  3FW9 A;  3TSH A;  2VFR A;  3D2H A;  4BC9 A;  1WVF A;  4PVK A;  3GSY A;  3D2J A;  3W8W A;  1JRO A;  2OAI A;  5FXF A;  1N63 C;  1AHV A;  1HSK A;  3LAE A;  3SR6 B;  4BBY A;  1W1O A;  3FWA A;  1AHZ A;  1E8G A;  3AMZ A;  3BW7 A;  2BVG A;  3AN1 A;  3I99 A;  1E0Y A;  1N62 C;  5AE1 A;  2R2Z A;  1W1R A;  1W1S A;  2VFU A;  1W1L A;  3EUB 3;  3S1F A;  1E8H A;  5FXE A;  3S1E A;  2P13 A;  1ZXI C;  2YVS A;  2Q85 A;  4HG0 A;  5D79 A;  3VTE A;  3NRZ B;  5G5H B;  1RM6 B;  4O95 A;  2QKN A;  1FO4 A;  2GQT A;  4BC7 A;  5FXP A;  1W1Q A;  1AHU A;  1VAO A;  3KJM A;  1MBB A;  3DQ0 A;  3NVV B;  2I0K A;  3NVZ B;  4BCA A;  3S1C A;  1WVE A;  1FFU C;  2BVH A;  1FIQ B;  1QLU A;  1T3Q C;  1FFV C;  2BVF A;  2GQU A;  2Q4W A;  3TX1 A;  4DNS A;  4JAY A;  2QPM A;  4PVE A;  2PLS A;  5ADZ A;  2EXR A;  3D2D A;  3TSJ A;  3W8X A;  2VAO A;  4PZF A;  4MLA A;  4XLO A;  1UXY A;  2VFT A;  2P4P A;  1SB3 B;  4UD8 A;  1VDV A; 
#chains in the Genus database with same CATH topology
 3JS8 A;  1DIQ A;  5L6F A;  1F0X A;  1I19 A;  1V97 A;  5AE3 A;  3EJD B;  1N5W C;  5HHZ A;  2W55 A;  2VFV A;  3NVW B;  2W3R A;  4PWB A;  4ZOH B;  3B9J B;  1ZR6 A;  1WYG A;  2Y4G A;  5K8E A;  2PLI A;  1W1J A;  2UUU A;  4ML8 A;  3S1D A;  2RK5 A;  2O3G A;  3DED A;  5I1W A;  1W1M A;  3W8Z A;  2W54 A;  3C0P A;  2VFS A;  1N61 C;  4PYT A;  3PQB A;  4PVJ A;  4OAL A;  5FXD A;  3LLB A;  3AM9 A;  3NVY B;  2W3S A;  1QLT A;  3EJB B;  4PWC A;  3FW8 A;  1W1K A;  3NS1 B;  2MBR A;  3RJ8 A;  3EJE B;  4EC3 A;  1MBT A;  2AXR A;  5G5G B;  3HRD C;  1E8F A;  2P3H A;  5AE2 A;  3FW7 A;  1DII A;  1DZN A;  5HQX A;  1N5X A;  4PVH A;  2NQW A;  2Y3R A;  4JB1 A;  2Y08 A;  3ETR B;  1N60 C;  1JRP A;  5HMR A;  2R8D A;  2E3T A;  5I1V A;  3PM9 A;  3FW9 A;  3TSH A;  2VFR A;  3D2H A;  4BC9 A;  1WVF A;  4PVK A;  3GSY A;  3D2J A;  3W8W A;  1JRO A;  2OAI A;  5FXF A;  1N63 C;  1AHV A;  1HSK A;  3LAE A;  3POP A;  3SR6 B;  4BBY A;  1W1O A;  3FWA A;  1AHZ A;  1E8G A;  3AMZ A;  3BW7 A;  2BVG A;  3AN1 A;  3I99 A;  1E0Y A;  1N62 C;  5AE1 A;  2R2Z A;  3RJA A;  2WDW A;  1W1R A;  1W1S A;  2VFU A;  1W1L A;  3EUB 3;  3S1F A;  1E8H A;  5FXE A;  3S1E A;  2P13 A;  1ZXI C;  2YVS A;  2Q85 A;  4HG0 A;  5D79 A;  3VTE A;  3NRZ B;  5G5H B;  1RM6 B;  4O95 A;  2QKN A;  1FO4 A;  2GQT A;  2Y3S A;  2UUV A;  4BC7 A;  5FXP A;  1W1Q A;  1AHU A;  1VAO A;  3KJM A;  1MBB A;  3DQ0 A;  3NVV B;  2I0K A;  3NVZ B;  4BCA A;  2IPI A;  3S1C A;  1WVE A;  1FFU C;  2BVH A;  1FIQ B;  1QLU A;  1T3Q C;  1FFV C;  2BVF A;  5L6G A;  2GQU A;  2Q4W A;  3TX1 A;  4DNS A;  5AWV A;  4JAY A;  3HSU A;  2QPM A;  4PVE A;  2PLS A;  5ADZ A;  2EXR A;  3D2D A;  3TSJ A;  3W8X A;  2VAO A;  4PZF A;  4MLA A;  4XLO A;  1UXY A;  2VFT A;  2P4P A;  1SB3 B;  4UD8 A;  1VDV A; 
#chains in the Genus database with same CATH homology
 3JS8 A;  1DIQ A;  5L6F A;  1F0X A;  1I19 A;  1V97 A;  5AE3 A;  1N5W C;  5HHZ A;  2W55 A;  2VFV A;  3NVW B;  2W3R A;  4PWB A;  4ZOH B;  3B9J B;  1ZR6 A;  1WYG A;  2Y4G A;  5K8E A;  2PLI A;  1W1J A;  2UUU A;  4ML8 A;  3S1D A;  2RK5 A;  2O3G A;  3DED A;  5I1W A;  1W1M A;  3W8Z A;  2W54 A;  3C0P A;  2VFS A;  1N61 C;  4PYT A;  3PQB A;  4PVJ A;  4OAL A;  5FXD A;  3LLB A;  3AM9 A;  3NVY B;  2W3S A;  1QLT A;  4PWC A;  3FW8 A;  1W1K A;  3NS1 B;  2MBR A;  3RJ8 A;  4EC3 A;  1MBT A;  2AXR A;  5G5G B;  3HRD C;  1E8F A;  2P3H A;  5AE2 A;  3FW7 A;  1DII A;  1DZN A;  5HQX A;  1N5X A;  4PVH A;  2NQW A;  2Y3R A;  4JB1 A;  2Y08 A;  3ETR B;  1N60 C;  1JRP A;  5HMR A;  2R8D A;  2E3T A;  5I1V A;  3PM9 A;  3FW9 A;  3TSH A;  2VFR A;  3D2H A;  4BC9 A;  1WVF A;  4PVK A;  3GSY A;  3D2J A;  3W8W A;  1JRO A;  2OAI A;  5FXF A;  1N63 C;  1AHV A;  1HSK A;  3LAE A;  3POP A;  3SR6 B;  4BBY A;  1W1O A;  3FWA A;  1AHZ A;  1E8G A;  3AMZ A;  3BW7 A;  2BVG A;  3AN1 A;  3I99 A;  1E0Y A;  1N62 C;  5AE1 A;  2R2Z A;  3RJA A;  2WDW A;  1W1R A;  1W1S A;  2VFU A;  1W1L A;  3EUB 3;  3S1F A;  1E8H A;  5FXE A;  3S1E A;  2P13 A;  1ZXI C;  2YVS A;  2Q85 A;  4HG0 A;  5D79 A;  3VTE A;  3NRZ B;  5G5H B;  1RM6 B;  4O95 A;  2QKN A;  1FO4 A;  2GQT A;  2Y3S A;  2UUV A;  4BC7 A;  5FXP A;  1W1Q A;  1AHU A;  1VAO A;  3KJM A;  1MBB A;  3DQ0 A;  3NVV B;  2I0K A;  3NVZ B;  4BCA A;  2IPI A;  3S1C A;  1WVE A;  1FFU C;  2BVH A;  1FIQ B;  1QLU A;  1T3Q C;  1FFV C;  2BVF A;  5L6G A;  2GQU A;  2Q4W A;  3TX1 A;  4DNS A;  5AWV A;  4JAY A;  3HSU A;  2QPM A;  4PVE A;  2PLS A;  5ADZ A;  2EXR A;  3D2D A;  3TSJ A;  3W8X A;  2VAO A;  4PZF A;  4MLA A;  4XLO A;  1UXY A;  2VFT A;  2P4P A;  1SB3 B;  4UD8 A;  1VDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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