3C0PA

Maize cytokinin oxidase/dehydrogenase complexed with the allenic cytokinin analog ha-8
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 1
publication title Mechanism-based inhibitors of cytokinin oxidase/dehydrogenase attack FAD cofactor
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 167
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3c0pA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3c0pA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3c0pA03
3BW7A 2YVSA 1W1OA 5FXEA 2BVFA 3SR6B 4PWCA 1I19A 4O95A 3D2DA 2MBRA 3FW7A 4PVHA 3W8XA 3LAEA 1MBTA 2EXRA 3AN1A 2Q4WA 4PWBA 4BC9A 2R8DA 3S1EA 1V97A 2VFSA 1W1JA 3KJMA 2PLIA 4UD8A 2VFRA 1FFUC 1QLTA 3C0PA 4BCAA 2VFVA 4MLAA 2P13A 2BVHA 2R2ZA 1T3QC 1VAOA 3VTEA 3LLBA 1HSKA 3AMZA 1W1MA 3NVVB 1N61C 2E3TA 3GSYA 1FO4A 5G5GB 3EUB3 2QPMA 3B9JB 4PVJA 1WYGA 5AE3A 2RK5A 1N62C 1W1LA 5HHZA 3NVZB 3S1FA 4PVKA 1E8GA 2BVGA 4BBYA 3HRDC 2P3HA 4JAYA 3TSHA 1AHUA 5D79A 3JS8A 3DQ0A 1DZNA 1W1SA 1QLUA 4OALA 3ETRB 1MBBA 1ZR6A 3S1CA 1E8HA 3FW9A 2PLSA 3AM9A 4HG0A 2Q85A 5AE2A 1FIQB 1JROA 1E0YA 1F0XA 3NRZB 5HMRA 1UXYA 2VFUA 5G5HB 3PM9A 4PVEA 1AHZA 5ADZA 4JB1A 3D2JA 3W8ZA 3NVYB 1E8FA 2VFTA 3NVWB 3DEDA 3FW8A 2NQWA 1VDVA 3TSJA 5FXPA 5HQXA 1JRPA 2O3GA 1AHVA 1FFVC 1N5WC 2W55A 4ML8A 5FXDA 3I99A 3D2HA 5FXFA 1WVFA 1N60C 4ZOHB 2GQUA 1N5XA 1DIQA 3W8WA 4BC7A 1SB3B 4DNSA 1W1RA 3NS1B 2QKNA 4XLOA 2VAOA 4EC3A 1DIIA 2GQTA 2I0KA 5AE1A 2W3RA 3TX1A 1N63C 1W1KA 2W3SA 1WVEA 1W1QA 3S1DA 2P4PA 2OAIA 1ZXIC 4PYTA 2AXRA 3FWAA 4PZFA 2W54A 1RM6B
chains in the Genus database with same CATH superfamily
3BW7A 2YVSA 1W1OA 5FXEA 5L6GA 2BVFA 3SR6B 4PWCA 2UUUA 1I19A 4O95A 3D2DA 2MBRA 2Y3RA 5L6FA 3FW7A 4PVHA 3W8XA 3LAEA 1MBTA 2EXRA 3AN1A 2Q4WA 2IPIA 4PWBA 4BC9A 2R8DA 3S1EA 1V97A 2VFSA 1W1JA 3KJMA 2PLIA 4UD8A 2VFRA 1FFUC 1QLTA 3C0PA 4BCAA 2VFVA 4MLAA 2P13A 2BVHA 2R2ZA 1T3QC 1VAOA 3VTEA 2UUVA 1HSKA 3AMZA 3LLBA 1W1MA 3NVVB 5AWVA 1N61C 3PQBA 2E3TA 3GSYA 1FO4A 5G5GB 3EUB3 2QPMA 3B9JB 4PVJA 3POPA 5I1VA 1WYGA 5AE3A 2RK5A 1N62C 1W1LA 5HHZA 3NVZB 3S1FA 3EJEB 4PVKA 1E8GA 2BVGA 4BBYA 3HRDC 2P3HA 4JAYA 3TSHA 1AHUA 5I1WA 5D79A 3JS8A 3DQ0A 1DZNA 1W1SA 1QLUA 4OALA 3ETRB 1MBBA 1ZR6A 3S1CA 1E8HA 3FW9A 2PLSA 3AM9A 4HG0A 2Q85A 5AE2A 1FIQB 1JROA 1E0YA 1F0XA 3NRZB 5HMRA 1UXYA 2Y4GA 2VFUA 5G5HB 3PM9A 4PVEA 1AHZA 5ADZA 3EJDB 3RJ8A 4JB1A 5K8EA 3D2JA 3W8ZA 3NVYB 1E8FA 2VFTA 2Y3SA 3HSUA 3EJBB 3NVWB 3DEDA 3FW8A 2NQWA 1VDVA 3TSJA 5FXPA 2WDWA 5HQXA 1JRPA 2O3GA 1AHVA 1FFVC 1N5WC 2W55A 4ML8A 5FXDA 3I99A 3D2HA 5FXFA 1WVFA 1N60C 4ZOHB 2GQUA 1N5XA 1DIQA 3W8WA 4BC7A 1SB3B 4DNSA 3RJAA 1W1RA 2Y08A 3NS1B 2QKNA 4XLOA 2VAOA 4EC3A 1DIIA 2GQTA 2I0KA 5AE1A 2W3RA 3TX1A 1N63C 1W1KA 2W3SA 1WVEA 1W1QA 3S1DA 2P4PA 2OAIA 1ZXIC 4PYTA 2AXRA 3FWAA 4PZFA 2W54A 1RM6B
chains in the Genus database with same CATH topology
3BW7A 2YVSA 1W1OA 5FXEA 5L6GA 2BVFA 3SR6B 4PWCA 2UUUA 1I19A 4O95A 3D2DA 2MBRA 2Y3RA 5L6FA 3FW7A 4PVHA 3W8XA 3LAEA 1MBTA 2EXRA 3AN1A 2Q4WA 2IPIA 4PWBA 4BC9A 2R8DA 3S1EA 1V97A 2VFSA 1W1JA 3KJMA 2PLIA 4UD8A 2VFRA 1FFUC 1QLTA 3C0PA 4BCAA 2VFVA 4MLAA 2P13A 2BVHA 2R2ZA 1T3QC 1VAOA 3VTEA 2UUVA 1HSKA 3AMZA 3LLBA 1W1MA 3NVVB 5AWVA 1N61C 3PQBA 2E3TA 3GSYA 1FO4A 5G5GB 3EUB3 2QPMA 3B9JB 4PVJA 3POPA 5I1VA 1WYGA 5AE3A 2RK5A 1N62C 1W1LA 5HHZA 3NVZB 3S1FA 4PVKA 1E8GA 2BVGA 4BBYA 3HRDC 2P3HA 4JAYA 3TSHA 1AHUA 5I1WA 5D79A 3JS8A 3DQ0A 1DZNA 1W1SA 1QLUA 4OALA 3ETRB 1MBBA 1ZR6A 3S1CA 1E8HA 3FW9A 2PLSA 3AM9A 4HG0A 2Q85A 5AE2A 1FIQB 1JROA 1E0YA 1F0XA 3NRZB 5HMRA 1UXYA 2Y4GA 2VFUA 5G5HB 3PM9A 4PVEA 1AHZA 5ADZA 3RJ8A 4JB1A 5K8EA 3D2JA 3W8ZA 3NVYB 1E8FA 2VFTA 2Y3SA 3HSUA 3NVWB 3DEDA 3FW8A 2NQWA 1VDVA 3TSJA 5FXPA 2WDWA 5HQXA 1JRPA 2O3GA 1AHVA 1FFVC 1N5WC 2W55A 4ML8A 5FXDA 3I99A 3D2HA 5FXFA 1WVFA 1N60C 4ZOHB 2GQUA 1N5XA 1DIQA 3W8WA 4BC7A 1SB3B 4DNSA 3RJAA 1W1RA 2Y08A 3NS1B 2QKNA 4XLOA 2VAOA 4EC3A 1DIIA 2GQTA 2I0KA 5AE1A 2W3RA 3TX1A 1N63C 1W1KA 2W3SA 1WVEA 1W1QA 3S1DA 2P4PA 2OAIA 1ZXIC 4PYTA 2AXRA 3FWAA 4PZFA 2W54A 1RM6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BW7 A;  2YVS A;  1W1O A;  5FXE A;  2BVF A;  3SR6 B;  4PWC A;  1I19 A;  4O95 A;  3D2D A;  2MBR A;  3FW7 A;  4PVH A;  3W8X A;  3LAE A;  1MBT A;  2EXR A;  3AN1 A;  2Q4W A;  4PWB A;  4BC9 A;  2R8D A;  3S1E A;  1V97 A;  2VFS A;  1W1J A;  3KJM A;  2PLI A;  4UD8 A;  2VFR A;  1FFU C;  1QLT A;  3C0P A;  4BCA A;  2VFV A;  4MLA A;  2P13 A;  2BVH A;  2R2Z A;  1T3Q C;  1VAO A;  3VTE A;  3LLB A;  1HSK A;  3AMZ A;  1W1M A;  3NVV B;  1N61 C;  2E3T A;  3GSY A;  1FO4 A;  5G5G B;  3EUB 3;  2QPM A;  3B9J B;  4PVJ A;  1WYG A;  5AE3 A;  2RK5 A;  1N62 C;  1W1L A;  5HHZ A;  3NVZ B;  3S1F A;  4PVK A;  1E8G A;  2BVG A;  4BBY A;  3HRD C;  2P3H A;  4JAY A;  3TSH A;  1AHU A;  5D79 A;  3JS8 A;  3DQ0 A;  1DZN A;  1W1S A;  1QLU A;  4OAL A;  3ETR B;  1MBB A;  1ZR6 A;  3S1C A;  1E8H A;  3FW9 A;  2PLS A;  3AM9 A;  4HG0 A;  2Q85 A;  5AE2 A;  1FIQ B;  1JRO A;  1E0Y A;  1F0X A;  3NRZ B;  5HMR A;  1UXY A;  2VFU A;  5G5H B;  3PM9 A;  4PVE A;  1AHZ A;  5ADZ A;  4JB1 A;  3D2J A;  3W8Z A;  3NVY B;  1E8F A;  2VFT A;  3NVW B;  3DED A;  3FW8 A;  2NQW A;  1VDV A;  3TSJ A;  5FXP A;  5HQX A;  1JRP A;  2O3G A;  1AHV A;  1FFV C;  1N5W C;  2W55 A;  4ML8 A;  5FXD A;  3I99 A;  3D2H A;  5FXF A;  1WVF A;  1N60 C;  4ZOH B;  2GQU A;  1N5X A;  1DIQ A;  3W8W A;  4BC7 A;  1SB3 B;  4DNS A;  1W1R A;  3NS1 B;  2QKN A;  4XLO A;  2VAO A;  4EC3 A;  1DII A;  2GQT A;  2I0K A;  5AE1 A;  2W3R A;  3TX1 A;  1N63 C;  1W1K A;  2W3S A;  1WVE A;  1W1Q A;  3S1D A;  2P4P A;  2OAI A;  1ZXI C;  4PYT A;  2AXR A;  3FWA A;  4PZF A;  2W54 A;  1RM6 B; 
#chains in the Genus database with same CATH topology
 3BW7 A;  2YVS A;  1W1O A;  5FXE A;  5L6G A;  2BVF A;  3SR6 B;  4PWC A;  2UUU A;  1I19 A;  4O95 A;  3D2D A;  2MBR A;  2Y3R A;  5L6F A;  3FW7 A;  4PVH A;  3W8X A;  3LAE A;  1MBT A;  2EXR A;  3AN1 A;  2Q4W A;  2IPI A;  4PWB A;  4BC9 A;  2R8D A;  3S1E A;  1V97 A;  2VFS A;  1W1J A;  3KJM A;  2PLI A;  4UD8 A;  2VFR A;  1FFU C;  1QLT A;  3C0P A;  4BCA A;  2VFV A;  4MLA A;  2P13 A;  2BVH A;  2R2Z A;  1T3Q C;  1VAO A;  3VTE A;  2UUV A;  1HSK A;  3AMZ A;  3LLB A;  1W1M A;  3NVV B;  5AWV A;  1N61 C;  3PQB A;  2E3T A;  3GSY A;  1FO4 A;  5G5G B;  3EUB 3;  2QPM A;  3B9J B;  4PVJ A;  3POP A;  5I1V A;  1WYG A;  5AE3 A;  2RK5 A;  1N62 C;  1W1L A;  5HHZ A;  3NVZ B;  3S1F A;  3EJE B;  4PVK A;  1E8G A;  2BVG A;  4BBY A;  3HRD C;  2P3H A;  4JAY A;  3TSH A;  1AHU A;  5I1W A;  5D79 A;  3JS8 A;  3DQ0 A;  1DZN A;  1W1S A;  1QLU A;  4OAL A;  3ETR B;  1MBB A;  1ZR6 A;  3S1C A;  1E8H A;  3FW9 A;  2PLS A;  3AM9 A;  4HG0 A;  2Q85 A;  5AE2 A;  1FIQ B;  1JRO A;  1E0Y A;  1F0X A;  3NRZ B;  5HMR A;  1UXY A;  2Y4G A;  2VFU A;  5G5H B;  3PM9 A;  4PVE A;  1AHZ A;  5ADZ A;  3EJD B;  3RJ8 A;  4JB1 A;  5K8E A;  3D2J A;  3W8Z A;  3NVY B;  1E8F A;  2VFT A;  2Y3S A;  3HSU A;  3EJB B;  3NVW B;  3DED A;  3FW8 A;  2NQW A;  1VDV A;  3TSJ A;  5FXP A;  2WDW A;  5HQX A;  1JRP A;  2O3G A;  1AHV A;  1FFV C;  1N5W C;  2W55 A;  4ML8 A;  5FXD A;  3I99 A;  3D2H A;  5FXF A;  1WVF A;  1N60 C;  4ZOH B;  2GQU A;  1N5X A;  1DIQ A;  3W8W A;  4BC7 A;  1SB3 B;  4DNS A;  3RJA A;  1W1R A;  2Y08 A;  3NS1 B;  2QKN A;  4XLO A;  2VAO A;  4EC3 A;  1DII A;  2GQT A;  2I0K A;  5AE1 A;  2W3R A;  3TX1 A;  1N63 C;  1W1K A;  2W3S A;  1WVE A;  1W1Q A;  3S1D A;  2P4P A;  2OAI A;  1ZXI C;  4PYT A;  2AXR A;  3FWA A;  4PZF A;  2W54 A;  1RM6 B; 
#chains in the Genus database with same CATH homology
 3BW7 A;  2YVS A;  1W1O A;  5FXE A;  5L6G A;  2BVF A;  3SR6 B;  4PWC A;  2UUU A;  1I19 A;  4O95 A;  3D2D A;  2MBR A;  2Y3R A;  5L6F A;  3FW7 A;  4PVH A;  3W8X A;  3LAE A;  1MBT A;  2EXR A;  3AN1 A;  2Q4W A;  2IPI A;  4PWB A;  4BC9 A;  2R8D A;  3S1E A;  1V97 A;  2VFS A;  1W1J A;  3KJM A;  2PLI A;  4UD8 A;  2VFR A;  1FFU C;  1QLT A;  3C0P A;  4BCA A;  2VFV A;  4MLA A;  2P13 A;  2BVH A;  2R2Z A;  1T3Q C;  1VAO A;  3VTE A;  2UUV A;  1HSK A;  3AMZ A;  3LLB A;  1W1M A;  3NVV B;  5AWV A;  1N61 C;  3PQB A;  2E3T A;  3GSY A;  1FO4 A;  5G5G B;  3EUB 3;  2QPM A;  3B9J B;  4PVJ A;  3POP A;  5I1V A;  1WYG A;  5AE3 A;  2RK5 A;  1N62 C;  1W1L A;  5HHZ A;  3NVZ B;  3S1F A;  4PVK A;  1E8G A;  2BVG A;  4BBY A;  3HRD C;  2P3H A;  4JAY A;  3TSH A;  1AHU A;  5I1W A;  5D79 A;  3JS8 A;  3DQ0 A;  1DZN A;  1W1S A;  1QLU A;  4OAL A;  3ETR B;  1MBB A;  1ZR6 A;  3S1C A;  1E8H A;  3FW9 A;  2PLS A;  3AM9 A;  4HG0 A;  2Q85 A;  5AE2 A;  1FIQ B;  1JRO A;  1E0Y A;  1F0X A;  3NRZ B;  5HMR A;  1UXY A;  2Y4G A;  2VFU A;  5G5H B;  3PM9 A;  4PVE A;  1AHZ A;  5ADZ A;  3RJ8 A;  4JB1 A;  5K8E A;  3D2J A;  3W8Z A;  3NVY B;  1E8F A;  2VFT A;  2Y3S A;  3HSU A;  3NVW B;  3DED A;  3FW8 A;  2NQW A;  1VDV A;  3TSJ A;  5FXP A;  2WDW A;  5HQX A;  1JRP A;  2O3G A;  1AHV A;  1FFV C;  1N5W C;  2W55 A;  4ML8 A;  5FXD A;  3I99 A;  3D2H A;  5FXF A;  1WVF A;  1N60 C;  4ZOH B;  2GQU A;  1N5X A;  1DIQ A;  3W8W A;  4BC7 A;  1SB3 B;  4DNS A;  3RJA A;  1W1R A;  2Y08 A;  3NS1 B;  2QKN A;  4XLO A;  2VAO A;  4EC3 A;  1DII A;  2GQT A;  2I0K A;  5AE1 A;  2W3R A;  3TX1 A;  1N63 C;  1W1K A;  2W3S A;  1WVE A;  1W1Q A;  3S1D A;  2P4P A;  2OAI A;  1ZXI C;  4PYT A;  2AXR A;  3FWA A;  4PZF A;  2W54 A;  1RM6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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