3C0PA

Maize cytokinin oxidase/dehydrogenase complexed with the allenic cytokinin analog ha-8
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 1
publication title Mechanism-based inhibitors of cytokinin oxidase/dehydrogenase attack FAD cofactor
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 167
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3c0pA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3c0pA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3c0pA03
5G5HB 1E8GA 3W8WA 2BVGA 2VAOA 2OAIA 1W1MA 1W1KA 4JAYA 3W8ZA 1FIQB 3LAEA 4PWBA 3BW7A 2P4PA 2MBRA 1E8FA 5FXPA 1VAOA 3TSJA 1QLUA 2VFSA 3NRZB 3GSYA 4PVKA 4PVEA 4BCAA 5FXFA 2BVHA 2VFVA 1JRPA 1N62C 2PLIA 3NS1B 5FXEA 5G5GB 3C0PA 3S1CA 2P13A 3FW8A 5HQXA 3AM9A 3JS8A 4PYTA 4BBYA 1AHUA 4UD8A 3I99A 1FFVC 1N60C 2GQUA 2W55A 1E0YA 4BC9A 2Q4WA 1W1QA 4HG0A 4ZOHB 2NQWA 2BVFA 2W3SA 3FWAA 2R2ZA 3NVWB 5D79A 5HHZA 3AMZA 2I0KA 3EUB3 5AE1A 3VTEA 2R8DA 2P3HA 1MBBA 1DIIA 1W1OA 2VFUA 1RM6B 1I19A 4JB1A 4PZFA 3DQ0A 5AE2A 3TSHA 1WVEA 3PM9A 1QLTA 3NVYB 4XLOA 1ZR6A 2RK5A 3DEDA 2QKNA 4O95A 2GQTA 4MLAA 1FFUC 3S1EA 1E8HA 1T3QC 1F0XA 1W1RA 2PLSA 1AHVA 2EXRA 3FW9A 5ADZA 1N5XA 4PWCA 2Q85A 4ML8A 3D2DA 5AE3A 1HSKA 3NVVB 5HMRA 3SR6B 1FO4A 3AN1A 2VFRA 4EC3A 2AXRA 1N5WC 3TX1A 3D2HA 4OALA 3W8XA 4PVHA 1ZXIC 3D2JA 3NVZB 2W3RA 4DNSA 1UXYA 3FW7A 1VDVA 2E3TA 5FXDA 1DZNA 1W1JA 1V97A 2QPMA 3S1DA 3ETRB 1N61C 3B9JB 2VFTA 2YVSA 1AHZA 1MBTA 1WVFA 1W1LA 4PVJA 4BC7A 3S1FA 1WYGA 1DIQA 3KJMA 1SB3B 3HRDC 3LLBA 2W54A 2O3GA 1N63C 1W1SA 1JROA
chains in the Genus database with same CATH superfamily
2Y08A 2Y3RA 1E8GA 3W8WA 5G5HB 2BVGA 2VAOA 2OAIA 1W1MA 1W1KA 4JAYA 3W8ZA 2UUUA 1FIQB 3LAEA 4PWBA 3BW7A 2P4PA 2MBRA 1E8FA 5FXPA 1VAOA 3TSJA 1QLUA 2VFSA 3NRZB 3GSYA 4PVKA 4PVEA 4BCAA 5FXFA 2BVHA 2VFVA 1JRPA 1N62C 2PLIA 5I1WA 3NS1B 5FXEA 5G5GB 3C0PA 3S1CA 2P13A 3FW8A 5HQXA 3AM9A 3JS8A 4PYTA 4BBYA 1AHUA 4UD8A 3I99A 1FFVC 1N60C 2GQUA 2W55A 1E0YA 4BC9A 2Q4WA 1W1QA 4HG0A 4ZOHB 2NQWA 5L6FA 2BVFA 2W3SA 3FWAA 3NVWB 2R2ZA 5D79A 5HHZA 3AMZA 2I0KA 3EUB3 5AE1A 3VTEA 5L6GA 2R8DA 2P3HA 1MBBA 1DIIA 1W1OA 2VFUA 1RM6B 1I19A 4JB1A 4PZFA 3DQ0A 5AE2A 3TSHA 1WVEA 3PM9A 1QLTA 3NVYB 3RJAA 4XLOA 1ZR6A 2RK5A 3DEDA 2QKNA 4O95A 2IPIA 3EJEB 2GQTA 4MLAA 1FFUC 3S1EA 1E8HA 1T3QC 1F0XA 2UUVA 5AWVA 1W1RA 2PLSA 1AHVA 2EXRA 3FW9A 5ADZA 1N5XA 2Y4GA 4PWCA 2Q85A 4ML8A 3D2DA 5K8EA 5AE3A 1HSKA 3NVVB 5HMRA 3SR6B 1FO4A 3AN1A 3POPA 2VFRA 4EC3A 2AXRA 3RJ8A 1N5WC 3TX1A 3D2HA 4OALA 3W8XA 3EJBB 4PVHA 1ZXIC 3D2JA 3HSUA 3NVZB 2Y3SA 2W3RA 4DNSA 1UXYA 3FW7A 1VDVA 2E3TA 5FXDA 3PQBA 1DZNA 1W1JA 1V97A 2QPMA 3EJDB 3S1DA 5I1VA 3ETRB 1N61C 3B9JB 2VFTA 2YVSA 1AHZA 1MBTA 1WVFA 1W1LA 2WDWA 4PVJA 4BC7A 3S1FA 1WYGA 1DIQA 3KJMA 1SB3B 3HRDC 3LLBA 2W54A 2O3GA 1N63C 1W1SA 1JROA
chains in the Genus database with same CATH topology
2Y08A 2Y3RA 1E8GA 3W8WA 5G5HB 2BVGA 2VAOA 2OAIA 1W1MA 1W1KA 4JAYA 3W8ZA 2UUUA 1FIQB 3LAEA 4PWBA 3BW7A 2P4PA 2MBRA 1E8FA 5FXPA 1VAOA 3TSJA 1QLUA 2VFSA 3NRZB 3GSYA 4PVKA 4PVEA 4BCAA 5FXFA 2BVHA 2VFVA 1JRPA 1N62C 2PLIA 5I1WA 3NS1B 5FXEA 5G5GB 3C0PA 3S1CA 2P13A 3FW8A 5HQXA 3AM9A 3JS8A 4PYTA 4BBYA 1AHUA 4UD8A 3I99A 1FFVC 1N60C 2GQUA 2W55A 1E0YA 4BC9A 2Q4WA 1W1QA 4HG0A 4ZOHB 2NQWA 5L6FA 2BVFA 2W3SA 3FWAA 2R2ZA 3NVWB 5D79A 5HHZA 3AMZA 2I0KA 3EUB3 5AE1A 3VTEA 5L6GA 2R8DA 2P3HA 1MBBA 1DIIA 1W1OA 2VFUA 1RM6B 1I19A 4JB1A 4PZFA 3DQ0A 5AE2A 3TSHA 1WVEA 3PM9A 1QLTA 3NVYB 3RJAA 4XLOA 1ZR6A 2RK5A 3DEDA 2QKNA 4O95A 2IPIA 2GQTA 4MLAA 1FFUC 3S1EA 1E8HA 1T3QC 1F0XA 2UUVA 5AWVA 1W1RA 2PLSA 1AHVA 2EXRA 3FW9A 5ADZA 1N5XA 2Y4GA 4PWCA 2Q85A 4ML8A 3D2DA 5K8EA 5AE3A 1HSKA 3NVVB 5HMRA 3SR6B 1FO4A 3AN1A 3POPA 2VFRA 4EC3A 2AXRA 3RJ8A 1N5WC 3TX1A 3D2HA 4OALA 3W8XA 4PVHA 1ZXIC 3D2JA 3HSUA 3NVZB 2Y3SA 2W3RA 4DNSA 1UXYA 3FW7A 1VDVA 2E3TA 5FXDA 3PQBA 1DZNA 1W1JA 1V97A 2QPMA 3S1DA 5I1VA 3ETRB 1N61C 3B9JB 2VFTA 2YVSA 1AHZA 1MBTA 1WVFA 1W1LA 2WDWA 4PVJA 4BC7A 3S1FA 1WYGA 1DIQA 3KJMA 1SB3B 3HRDC 3LLBA 2W54A 2O3GA 1N63C 1W1SA 1JROA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G5H B;  1E8G A;  3W8W A;  2BVG A;  2VAO A;  2OAI A;  1W1M A;  1W1K A;  4JAY A;  3W8Z A;  1FIQ B;  3LAE A;  4PWB A;  3BW7 A;  2P4P A;  2MBR A;  1E8F A;  5FXP A;  1VAO A;  3TSJ A;  1QLU A;  2VFS A;  3NRZ B;  3GSY A;  4PVK A;  4PVE A;  4BCA A;  5FXF A;  2BVH A;  2VFV A;  1JRP A;  1N62 C;  2PLI A;  3NS1 B;  5FXE A;  5G5G B;  3C0P A;  3S1C A;  2P13 A;  3FW8 A;  5HQX A;  3AM9 A;  3JS8 A;  4PYT A;  4BBY A;  1AHU A;  4UD8 A;  3I99 A;  1FFV C;  1N60 C;  2GQU A;  2W55 A;  1E0Y A;  4BC9 A;  2Q4W A;  1W1Q A;  4HG0 A;  4ZOH B;  2NQW A;  2BVF A;  2W3S A;  3FWA A;  2R2Z A;  3NVW B;  5D79 A;  5HHZ A;  3AMZ A;  2I0K A;  3EUB 3;  5AE1 A;  3VTE A;  2R8D A;  2P3H A;  1MBB A;  1DII A;  1W1O A;  2VFU A;  1RM6 B;  1I19 A;  4JB1 A;  4PZF A;  3DQ0 A;  5AE2 A;  3TSH A;  1WVE A;  3PM9 A;  1QLT A;  3NVY B;  4XLO A;  1ZR6 A;  2RK5 A;  3DED A;  2QKN A;  4O95 A;  2GQT A;  4MLA A;  1FFU C;  3S1E A;  1E8H A;  1T3Q C;  1F0X A;  1W1R A;  2PLS A;  1AHV A;  2EXR A;  3FW9 A;  5ADZ A;  1N5X A;  4PWC A;  2Q85 A;  4ML8 A;  3D2D A;  5AE3 A;  1HSK A;  3NVV B;  5HMR A;  3SR6 B;  1FO4 A;  3AN1 A;  2VFR A;  4EC3 A;  2AXR A;  1N5W C;  3TX1 A;  3D2H A;  4OAL A;  3W8X A;  4PVH A;  1ZXI C;  3D2J A;  3NVZ B;  2W3R A;  4DNS A;  1UXY A;  3FW7 A;  1VDV A;  2E3T A;  5FXD A;  1DZN A;  1W1J A;  1V97 A;  2QPM A;  3S1D A;  3ETR B;  1N61 C;  3B9J B;  2VFT A;  2YVS A;  1AHZ A;  1MBT A;  1WVF A;  1W1L A;  4PVJ A;  4BC7 A;  3S1F A;  1WYG A;  1DIQ A;  3KJM A;  1SB3 B;  3HRD C;  3LLB A;  2W54 A;  2O3G A;  1N63 C;  1W1S A;  1JRO A; 
#chains in the Genus database with same CATH topology
 2Y08 A;  2Y3R A;  1E8G A;  3W8W A;  5G5H B;  2BVG A;  2VAO A;  2OAI A;  1W1M A;  1W1K A;  4JAY A;  3W8Z A;  2UUU A;  1FIQ B;  3LAE A;  4PWB A;  3BW7 A;  2P4P A;  2MBR A;  1E8F A;  5FXP A;  1VAO A;  3TSJ A;  1QLU A;  2VFS A;  3NRZ B;  3GSY A;  4PVK A;  4PVE A;  4BCA A;  5FXF A;  2BVH A;  2VFV A;  1JRP A;  1N62 C;  2PLI A;  5I1W A;  3NS1 B;  5FXE A;  5G5G B;  3C0P A;  3S1C A;  2P13 A;  3FW8 A;  5HQX A;  3AM9 A;  3JS8 A;  4PYT A;  4BBY A;  1AHU A;  4UD8 A;  3I99 A;  1FFV C;  1N60 C;  2GQU A;  2W55 A;  1E0Y A;  4BC9 A;  2Q4W A;  1W1Q A;  4HG0 A;  4ZOH B;  2NQW A;  5L6F A;  2BVF A;  2W3S A;  3FWA A;  3NVW B;  2R2Z A;  5D79 A;  5HHZ A;  3AMZ A;  2I0K A;  3EUB 3;  5AE1 A;  3VTE A;  5L6G A;  2R8D A;  2P3H A;  1MBB A;  1DII A;  1W1O A;  2VFU A;  1RM6 B;  1I19 A;  4JB1 A;  4PZF A;  3DQ0 A;  5AE2 A;  3TSH A;  1WVE A;  3PM9 A;  1QLT A;  3NVY B;  3RJA A;  4XLO A;  1ZR6 A;  2RK5 A;  3DED A;  2QKN A;  4O95 A;  2IPI A;  3EJE B;  2GQT A;  4MLA A;  1FFU C;  3S1E A;  1E8H A;  1T3Q C;  1F0X A;  2UUV A;  5AWV A;  1W1R A;  2PLS A;  1AHV A;  2EXR A;  3FW9 A;  5ADZ A;  1N5X A;  2Y4G A;  4PWC A;  2Q85 A;  4ML8 A;  3D2D A;  5K8E A;  5AE3 A;  1HSK A;  3NVV B;  5HMR A;  3SR6 B;  1FO4 A;  3AN1 A;  3POP A;  2VFR A;  4EC3 A;  2AXR A;  3RJ8 A;  1N5W C;  3TX1 A;  3D2H A;  4OAL A;  3W8X A;  3EJB B;  4PVH A;  1ZXI C;  3D2J A;  3HSU A;  3NVZ B;  2Y3S A;  2W3R A;  4DNS A;  1UXY A;  3FW7 A;  1VDV A;  2E3T A;  5FXD A;  3PQB A;  1DZN A;  1W1J A;  1V97 A;  2QPM A;  3EJD B;  3S1D A;  5I1V A;  3ETR B;  1N61 C;  3B9J B;  2VFT A;  2YVS A;  1AHZ A;  1MBT A;  1WVF A;  1W1L A;  2WDW A;  4PVJ A;  4BC7 A;  3S1F A;  1WYG A;  1DIQ A;  3KJM A;  1SB3 B;  3HRD C;  3LLB A;  2W54 A;  2O3G A;  1N63 C;  1W1S A;  1JRO A; 
#chains in the Genus database with same CATH homology
 2Y08 A;  2Y3R A;  1E8G A;  3W8W A;  5G5H B;  2BVG A;  2VAO A;  2OAI A;  1W1M A;  1W1K A;  4JAY A;  3W8Z A;  2UUU A;  1FIQ B;  3LAE A;  4PWB A;  3BW7 A;  2P4P A;  2MBR A;  1E8F A;  5FXP A;  1VAO A;  3TSJ A;  1QLU A;  2VFS A;  3NRZ B;  3GSY A;  4PVK A;  4PVE A;  4BCA A;  5FXF A;  2BVH A;  2VFV A;  1JRP A;  1N62 C;  2PLI A;  5I1W A;  3NS1 B;  5FXE A;  5G5G B;  3C0P A;  3S1C A;  2P13 A;  3FW8 A;  5HQX A;  3AM9 A;  3JS8 A;  4PYT A;  4BBY A;  1AHU A;  4UD8 A;  3I99 A;  1FFV C;  1N60 C;  2GQU A;  2W55 A;  1E0Y A;  4BC9 A;  2Q4W A;  1W1Q A;  4HG0 A;  4ZOH B;  2NQW A;  5L6F A;  2BVF A;  2W3S A;  3FWA A;  2R2Z A;  3NVW B;  5D79 A;  5HHZ A;  3AMZ A;  2I0K A;  3EUB 3;  5AE1 A;  3VTE A;  5L6G A;  2R8D A;  2P3H A;  1MBB A;  1DII A;  1W1O A;  2VFU A;  1RM6 B;  1I19 A;  4JB1 A;  4PZF A;  3DQ0 A;  5AE2 A;  3TSH A;  1WVE A;  3PM9 A;  1QLT A;  3NVY B;  3RJA A;  4XLO A;  1ZR6 A;  2RK5 A;  3DED A;  2QKN A;  4O95 A;  2IPI A;  2GQT A;  4MLA A;  1FFU C;  3S1E A;  1E8H A;  1T3Q C;  1F0X A;  2UUV A;  5AWV A;  1W1R A;  2PLS A;  1AHV A;  2EXR A;  3FW9 A;  5ADZ A;  1N5X A;  2Y4G A;  4PWC A;  2Q85 A;  4ML8 A;  3D2D A;  5K8E A;  5AE3 A;  1HSK A;  3NVV B;  5HMR A;  3SR6 B;  1FO4 A;  3AN1 A;  3POP A;  2VFR A;  4EC3 A;  2AXR A;  3RJ8 A;  1N5W C;  3TX1 A;  3D2H A;  4OAL A;  3W8X A;  4PVH A;  1ZXI C;  3D2J A;  3HSU A;  3NVZ B;  2Y3S A;  2W3R A;  4DNS A;  1UXY A;  3FW7 A;  1VDV A;  2E3T A;  5FXD A;  3PQB A;  1DZN A;  1W1J A;  1V97 A;  2QPM A;  3S1D A;  5I1V A;  3ETR B;  1N61 C;  3B9J B;  2VFT A;  2YVS A;  1AHZ A;  1MBT A;  1WVF A;  1W1L A;  2WDW A;  4PVJ A;  4BC7 A;  3S1F A;  1WYG A;  1DIQ A;  3KJM A;  1SB3 B;  3HRD C;  3LLB A;  2W54 A;  2O3G A;  1N63 C;  1W1S A;  1JRO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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