3C0PA

Maize cytokinin oxidase/dehydrogenase complexed with the allenic cytokinin analog ha-8
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
502
structure length
496
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism-based inhibitors of cytokinin oxidase/dehydrogenase attack FAD cofactor
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 167
structure length 496
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3c0pA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3c0pA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3c0pA03
3S1CA 3NVWB 3JS8A 3W8XA 2RK5A 5HHZA 2Q4WA 1DIQA 4PWBA 5AE1A 3TSJA 2O3GA 3SR6B 1UXYA 3TSHA 4PYTA 4PVEA 2VFUA 1FFVC 2W55A 4BC7A 3NVVB 4ZOHB 1RM6B 1AHUA 4JAYA 1W1MA 4DNSA 4BCAA 5FXEA 2OAIA 2MBRA 2QKNA 3I99A 3FW8A 1WYGA 1N60C 5FXPA 3W8WA 1T3QC 2P13A 1N63C 1FIQB 1W1JA 3LLBA 3AM9A 4PVHA 3KJMA 1W1LA 1WVFA 5ADZA 4PZFA 3NVZB 2QPMA 4EC3A 2VFVA 1QLUA 1W1QA 3B9JB 1N5XA 3FW7A 1VAOA 3BW7A 2BVGA 4XLOA 2W54A 3S1FA 1QLTA 2GQUA 2YVSA 4MLAA 5HQXA 2VFSA 2P4PA 4ML8A 1ZR6A 1DIIA 1E8GA 1FO4A 3PM9A 4JB1A 3D2DA 2E3TA 3W8ZA 3EUB3 3TX1A 2VFRA 3VTEA 2EXRA 1E8FA 3FWAA 5AE2A 4BC9A 3GSYA 3LAEA 1I19A 1JRPA 5AE3A 2R2ZA 1E8HA 1FFUC 5G5HB 1WVEA 1MBTA 5D79A 1N5WC 3NS1B 2W3RA 4O95A 3S1EA 3ETRB 1AHZA 1N62C 3C0PA 1W1SA 5HMRA 2NQWA 3D2JA 4PWCA 2R8DA 4UD8A 3FW9A 1V97A 3D2HA 1W1KA 3DQ0A 1AHVA 1JROA 3NRZB 3S1DA 1W1OA 2VFTA 3DEDA 4HG0A 1N61C 2PLSA 2W3SA 1W1RA 5G5GB 3AN1A 5FXFA 1HSKA 4BBYA 2P3HA 1VDVA 5FXDA 4PVKA 2I0KA 2Q85A 3NVYB 4PVJA 1MBBA 4OALA 1DZNA 1E0YA 2GQTA 2PLIA 2BVHA 1ZXIC 1F0XA 3HRDC 3AMZA 2VAOA 1SB3B 2AXRA 2BVFA
chains in the Genus database with same CATH superfamily
3RJ8A 3NVWB 3S1CA 3JS8A 3W8XA 2RK5A 5HHZA 2Q4WA 1DIQA 4PWBA 5AE1A 3TSJA 2O3GA 3SR6B 1UXYA 3EJEB 4PYTA 3TSHA 3EJDB 2VFUA 4PVEA 1FFVC 2W55A 4BC7A 3NVVB 4ZOHB 1RM6B 1AHUA 4JAYA 5AWVA 1W1MA 4DNSA 4BCAA 5FXEA 2IPIA 2MBRA 2OAIA 2QKNA 3I99A 3FW8A 1WYGA 1N60C 5FXPA 3W8WA 1T3QC 2P13A 1N63C 1FIQB 1W1JA 2UUUA 3LLBA 3AM9A 4PVHA 3KJMA 1W1LA 1WVFA 5ADZA 4PZFA 3NVZB 2QPMA 4EC3A 2VFVA 1QLUA 1W1QA 3B9JB 1N5XA 3FW7A 1VAOA 2Y4GA 3BW7A 2BVGA 4XLOA 2W54A 3S1FA 1QLTA 2GQUA 5I1WA 2YVSA 4MLAA 5HQXA 2VFSA 2P4PA 4ML8A 1ZR6A 1DIIA 1E8GA 1FO4A 3PM9A 4JB1A 3D2DA 2E3TA 3W8ZA 3EUB3 3TX1A 2VFRA 3VTEA 2EXRA 1E8FA 3FWAA 5AE2A 4BC9A 3GSYA 3LAEA 1I19A 1JRPA 5L6FA 5AE3A 2R2ZA 1E8HA 1FFUC 5G5HB 1WVEA 1MBTA 5D79A 3POPA 1N5WC 3NS1B 2W3RA 4O95A 3S1EA 3ETRB 1AHZA 1N62C 3C0PA 1W1SA 5HMRA 2NQWA 3D2JA 4PWCA 2R8DA 5I1VA 4UD8A 3FW9A 1V97A 3D2HA 2UUVA 1W1KA 3DQ0A 3RJAA 1AHVA 1JROA 3NRZB 3S1DA 1W1OA 2VFTA 3DEDA 4HG0A 1N61C 2PLSA 2W3SA 1W1RA 5G5GB 3AN1A 5FXFA 2Y08A 1HSKA 4BBYA 2P3HA 5K8EA 1VDVA 5FXDA 4PVKA 2I0KA 2Q85A 3NVYB 4PVJA 2Y3SA 1MBBA 4OALA 3EJBB 1DZNA 3HSUA 1E0YA 2GQTA 2PLIA 2BVHA 2Y3RA 1ZXIC 1F0XA 5L6GA 3HRDC 3AMZA 3PQBA 2VAOA 1SB3B 2WDWA 2AXRA 2BVFA
chains in the Genus database with same CATH topology
3RJ8A 3S1CA 3NVWB 3JS8A 3W8XA 2RK5A 5HHZA 2Q4WA 1DIQA 4PWBA 5AE1A 3TSJA 2O3GA 3SR6B 1UXYA 3TSHA 4PYTA 4PVEA 2VFUA 1FFVC 2W55A 4BC7A 3NVVB 4ZOHB 1RM6B 1AHUA 4JAYA 5AWVA 1W1MA 4DNSA 4BCAA 5FXEA 2IPIA 2MBRA 2OAIA 2QKNA 3I99A 3FW8A 1WYGA 1N60C 5FXPA 3W8WA 1T3QC 2P13A 1N63C 1FIQB 1W1JA 2UUUA 3LLBA 3AM9A 4PVHA 3KJMA 1W1LA 1WVFA 5ADZA 4PZFA 3NVZB 2QPMA 4EC3A 2VFVA 1QLUA 1W1QA 3B9JB 1N5XA 3FW7A 1VAOA 2Y4GA 3BW7A 2BVGA 4XLOA 2W54A 3S1FA 1QLTA 2GQUA 5I1WA 2YVSA 4MLAA 5HQXA 2VFSA 2P4PA 4ML8A 1ZR6A 1DIIA 1E8GA 1FO4A 3PM9A 4JB1A 3D2DA 2E3TA 3W8ZA 3EUB3 3TX1A 2VFRA 3VTEA 2EXRA 1E8FA 3FWAA 5AE2A 4BC9A 3GSYA 3LAEA 1I19A 1JRPA 5L6FA 5AE3A 2R2ZA 1E8HA 1FFUC 5G5HB 1WVEA 1MBTA 5D79A 3POPA 1N5WC 3NS1B 2W3RA 4O95A 3S1EA 3ETRB 1AHZA 1N62C 3C0PA 1W1SA 5HMRA 2NQWA 3D2JA 4PWCA 2R8DA 5I1VA 4UD8A 3FW9A 1V97A 3D2HA 2UUVA 1W1KA 3DQ0A 3RJAA 1AHVA 1JROA 3NRZB 3S1DA 1W1OA 2VFTA 3DEDA 4HG0A 1N61C 2PLSA 2W3SA 1W1RA 5G5GB 3AN1A 5FXFA 2Y08A 1HSKA 4BBYA 2P3HA 5K8EA 1VDVA 5FXDA 4PVKA 2I0KA 2Q85A 3NVYB 4PVJA 2Y3SA 1MBBA 4OALA 1DZNA 3HSUA 1E0YA 2GQTA 2PLIA 2BVHA 2Y3RA 1ZXIC 1F0XA 5L6GA 3HRDC 3AMZA 3PQBA 2VAOA 1SB3B 2WDWA 2AXRA 2BVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S1C A;  3NVW B;  3JS8 A;  3W8X A;  2RK5 A;  5HHZ A;  2Q4W A;  1DIQ A;  4PWB A;  5AE1 A;  3TSJ A;  2O3G A;  3SR6 B;  1UXY A;  3TSH A;  4PYT A;  4PVE A;  2VFU A;  1FFV C;  2W55 A;  4BC7 A;  3NVV B;  4ZOH B;  1RM6 B;  1AHU A;  4JAY A;  1W1M A;  4DNS A;  4BCA A;  5FXE A;  2OAI A;  2MBR A;  2QKN A;  3I99 A;  3FW8 A;  1WYG A;  1N60 C;  5FXP A;  3W8W A;  1T3Q C;  2P13 A;  1N63 C;  1FIQ B;  1W1J A;  3LLB A;  3AM9 A;  4PVH A;  3KJM A;  1W1L A;  1WVF A;  5ADZ A;  4PZF A;  3NVZ B;  2QPM A;  4EC3 A;  2VFV A;  1QLU A;  1W1Q A;  3B9J B;  1N5X A;  3FW7 A;  1VAO A;  3BW7 A;  2BVG A;  4XLO A;  2W54 A;  3S1F A;  1QLT A;  2GQU A;  2YVS A;  4MLA A;  5HQX A;  2VFS A;  2P4P A;  4ML8 A;  1ZR6 A;  1DII A;  1E8G A;  1FO4 A;  3PM9 A;  4JB1 A;  3D2D A;  2E3T A;  3W8Z A;  3EUB 3;  3TX1 A;  2VFR A;  3VTE A;  2EXR A;  1E8F A;  3FWA A;  5AE2 A;  4BC9 A;  3GSY A;  3LAE A;  1I19 A;  1JRP A;  5AE3 A;  2R2Z A;  1E8H A;  1FFU C;  5G5H B;  1WVE A;  1MBT A;  5D79 A;  1N5W C;  3NS1 B;  2W3R A;  4O95 A;  3S1E A;  3ETR B;  1AHZ A;  1N62 C;  3C0P A;  1W1S A;  5HMR A;  2NQW A;  3D2J A;  4PWC A;  2R8D A;  4UD8 A;  3FW9 A;  1V97 A;  3D2H A;  1W1K A;  3DQ0 A;  1AHV A;  1JRO A;  3NRZ B;  3S1D A;  1W1O A;  2VFT A;  3DED A;  4HG0 A;  1N61 C;  2PLS A;  2W3S A;  1W1R A;  5G5G B;  3AN1 A;  5FXF A;  1HSK A;  4BBY A;  2P3H A;  1VDV A;  5FXD A;  4PVK A;  2I0K A;  2Q85 A;  3NVY B;  4PVJ A;  1MBB A;  4OAL A;  1DZN A;  1E0Y A;  2GQT A;  2PLI A;  2BVH A;  1ZXI C;  1F0X A;  3HRD C;  3AMZ A;  2VAO A;  1SB3 B;  2AXR A;  2BVF A; 
#chains in the Genus database with same CATH topology
 3RJ8 A;  3NVW B;  3S1C A;  3JS8 A;  3W8X A;  2RK5 A;  5HHZ A;  2Q4W A;  1DIQ A;  4PWB A;  5AE1 A;  3TSJ A;  2O3G A;  3SR6 B;  1UXY A;  3EJE B;  4PYT A;  3TSH A;  3EJD B;  2VFU A;  4PVE A;  1FFV C;  2W55 A;  4BC7 A;  3NVV B;  4ZOH B;  1RM6 B;  1AHU A;  4JAY A;  5AWV A;  1W1M A;  4DNS A;  4BCA A;  5FXE A;  2IPI A;  2MBR A;  2OAI A;  2QKN A;  3I99 A;  3FW8 A;  1WYG A;  1N60 C;  5FXP A;  3W8W A;  1T3Q C;  2P13 A;  1N63 C;  1FIQ B;  1W1J A;  2UUU A;  3LLB A;  3AM9 A;  4PVH A;  3KJM A;  1W1L A;  1WVF A;  5ADZ A;  4PZF A;  3NVZ B;  2QPM A;  4EC3 A;  2VFV A;  1QLU A;  1W1Q A;  3B9J B;  1N5X A;  3FW7 A;  1VAO A;  2Y4G A;  3BW7 A;  2BVG A;  4XLO A;  2W54 A;  3S1F A;  1QLT A;  2GQU A;  5I1W A;  2YVS A;  4MLA A;  5HQX A;  2VFS A;  2P4P A;  4ML8 A;  1ZR6 A;  1DII A;  1E8G A;  1FO4 A;  3PM9 A;  4JB1 A;  3D2D A;  2E3T A;  3W8Z A;  3EUB 3;  3TX1 A;  2VFR A;  3VTE A;  2EXR A;  1E8F A;  3FWA A;  5AE2 A;  4BC9 A;  3GSY A;  3LAE A;  1I19 A;  1JRP A;  5L6F A;  5AE3 A;  2R2Z A;  1E8H A;  1FFU C;  5G5H B;  1WVE A;  1MBT A;  5D79 A;  3POP A;  1N5W C;  3NS1 B;  2W3R A;  4O95 A;  3S1E A;  3ETR B;  1AHZ A;  1N62 C;  3C0P A;  1W1S A;  5HMR A;  2NQW A;  3D2J A;  4PWC A;  2R8D A;  5I1V A;  4UD8 A;  3FW9 A;  1V97 A;  3D2H A;  2UUV A;  1W1K A;  3DQ0 A;  3RJA A;  1AHV A;  1JRO A;  3NRZ B;  3S1D A;  1W1O A;  2VFT A;  3DED A;  4HG0 A;  1N61 C;  2PLS A;  2W3S A;  1W1R A;  5G5G B;  3AN1 A;  5FXF A;  2Y08 A;  1HSK A;  4BBY A;  2P3H A;  5K8E A;  1VDV A;  5FXD A;  4PVK A;  2I0K A;  2Q85 A;  3NVY B;  4PVJ A;  2Y3S A;  1MBB A;  4OAL A;  3EJB B;  1DZN A;  3HSU A;  1E0Y A;  2GQT A;  2PLI A;  2BVH A;  2Y3R A;  1ZXI C;  1F0X A;  5L6G A;  3HRD C;  3AMZ A;  3PQB A;  2VAO A;  1SB3 B;  2WDW A;  2AXR A;  2BVF A; 
#chains in the Genus database with same CATH homology
 3RJ8 A;  3S1C A;  3NVW B;  3JS8 A;  3W8X A;  2RK5 A;  5HHZ A;  2Q4W A;  1DIQ A;  4PWB A;  5AE1 A;  3TSJ A;  2O3G A;  3SR6 B;  1UXY A;  3TSH A;  4PYT A;  4PVE A;  2VFU A;  1FFV C;  2W55 A;  4BC7 A;  3NVV B;  4ZOH B;  1RM6 B;  1AHU A;  4JAY A;  5AWV A;  1W1M A;  4DNS A;  4BCA A;  5FXE A;  2IPI A;  2MBR A;  2OAI A;  2QKN A;  3I99 A;  3FW8 A;  1WYG A;  1N60 C;  5FXP A;  3W8W A;  1T3Q C;  2P13 A;  1N63 C;  1FIQ B;  1W1J A;  2UUU A;  3LLB A;  3AM9 A;  4PVH A;  3KJM A;  1W1L A;  1WVF A;  5ADZ A;  4PZF A;  3NVZ B;  2QPM A;  4EC3 A;  2VFV A;  1QLU A;  1W1Q A;  3B9J B;  1N5X A;  3FW7 A;  1VAO A;  2Y4G A;  3BW7 A;  2BVG A;  4XLO A;  2W54 A;  3S1F A;  1QLT A;  2GQU A;  5I1W A;  2YVS A;  4MLA A;  5HQX A;  2VFS A;  2P4P A;  4ML8 A;  1ZR6 A;  1DII A;  1E8G A;  1FO4 A;  3PM9 A;  4JB1 A;  3D2D A;  2E3T A;  3W8Z A;  3EUB 3;  3TX1 A;  2VFR A;  3VTE A;  2EXR A;  1E8F A;  3FWA A;  5AE2 A;  4BC9 A;  3GSY A;  3LAE A;  1I19 A;  1JRP A;  5L6F A;  5AE3 A;  2R2Z A;  1E8H A;  1FFU C;  5G5H B;  1WVE A;  1MBT A;  5D79 A;  3POP A;  1N5W C;  3NS1 B;  2W3R A;  4O95 A;  3S1E A;  3ETR B;  1AHZ A;  1N62 C;  3C0P A;  1W1S A;  5HMR A;  2NQW A;  3D2J A;  4PWC A;  2R8D A;  5I1V A;  4UD8 A;  3FW9 A;  1V97 A;  3D2H A;  2UUV A;  1W1K A;  3DQ0 A;  3RJA A;  1AHV A;  1JRO A;  3NRZ B;  3S1D A;  1W1O A;  2VFT A;  3DED A;  4HG0 A;  1N61 C;  2PLS A;  2W3S A;  1W1R A;  5G5G B;  3AN1 A;  5FXF A;  2Y08 A;  1HSK A;  4BBY A;  2P3H A;  5K8E A;  1VDV A;  5FXD A;  4PVK A;  2I0K A;  2Q85 A;  3NVY B;  4PVJ A;  2Y3S A;  1MBB A;  4OAL A;  1DZN A;  3HSU A;  1E0Y A;  2GQT A;  2PLI A;  2BVH A;  2Y3R A;  1ZXI C;  1F0X A;  5L6G A;  3HRD C;  3AMZ A;  3PQB A;  2VAO A;  1SB3 B;  2WDW A;  2AXR A;  2BVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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