1AHVA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase in complex with 2-nitro-p-cresol
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
555
structure length
555
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
pubmed doi rcsb
total genus 165
structure length 555
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1997-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1ahvA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1ahvA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1ahvA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1ahvA03
1F0XA 4O95A 2P3HA 4BCAA 5G5HB 1N61C 1V97A 1AHUA 4PWCA 1DIIA 5AE1A 3NVWB 2VFRA 4PYTA 4JB1A 2E3TA 5D79A 3VTEA 5G5GB 2R2ZA 2VFSA 2VFTA 2Q4WA 3AMZA 4JAYA 3DQ0A 5HMRA 1AHZA 1W1QA 1E8HA 1N60C 3BW7A 3TSJA 2VFUA 4PVKA 5FXEA 2VAOA 3D2JA 3LLBA 1E0YA 3D2HA 4PWBA 4PZFA 4MLAA 3W8XA 2BVGA 3NS1B 3FWAA 3KJMA 3SR6B 2RK5A 1W1OA 2I0KA 4DNSA 1VAOA 3S1EA 1SB3B 3B9JB 1JRPA 4BC7A 1FFVC 2R8DA 3FW8A 5HQXA 3I99A 4PVEA 3W8WA 1JROA 3NRZB 1W1KA 2W54A 2QPMA 5AE3A 4BBYA 1AHVA 5HHZA 2YVSA 1N5WC 1W1SA 3HRDC 5FXFA 3C0PA 3S1DA 2EXRA 5FXDA 1W1RA 1WYGA 2W3RA 4UD8A 2W55A 2BVHA 2QKNA 2GQUA 3TSHA 1W1JA 4ZOHB 3S1CA 2W3SA 2OAIA 1I19A 1W1MA 3DEDA 3LAEA 4EC3A 1W1LA 1ZXIC 4ML8A 3NVYB 1QLUA 3S1FA 1DIQA 4PVHA 1WVEA 2P13A 5FXPA 3AM9A 2BVFA 3FW7A 1VDVA 2O3GA 3FW9A 1MBBA 1T3QC 3ETRB 1DZNA 3PM9A 1MBTA 3NVZB 1RM6B 1FO4A 1HSKA 2VFVA 3EUB3 3W8ZA 1FIQB 5AE2A 1FFUC 4BC9A 2MBRA 3JS8A 1WVFA 3TX1A 2AXRA 2PLIA 3GSYA 4PVJA 1ZR6A 2NQWA 1E8GA 2PLSA 1N63C 1UXYA 2GQTA 4OALA 2Q85A 4HG0A 1N62C 3NVVB 1QLTA 5ADZA 1N5XA 2P4PA 4XLOA 3AN1A 1E8FA 3D2DA
chains in the Genus database with same CATH superfamily
1F0XA 4O95A 2P3HA 4BCAA 5G5HB 1N61C 3POPA 1V97A 1AHUA 4PWCA 1DIIA 2UUVA 5AE1A 3EJBB 3NVWB 5K8EA 2VFRA 4PYTA 4JB1A 3EJEB 2E3TA 5D79A 3VTEA 5G5GB 2R2ZA 2VFSA 2VFTA 2Q4WA 3AMZA 4JAYA 3DQ0A 5HMRA 1AHZA 1W1QA 1E8HA 1N60C 3BW7A 3RJAA 3TSJA 2VFUA 4PVKA 5FXEA 5I1WA 2VAOA 3D2JA 3LLBA 1E0YA 3D2HA 4PWBA 4PZFA 4MLAA 3W8XA 2BVGA 3NS1B 3FWAA 2WDWA 3KJMA 3SR6B 2RK5A 1W1OA 2I0KA 4DNSA 1VAOA 3S1EA 1SB3B 3B9JB 1JRPA 4BC7A 1FFVC 2R8DA 3FW8A 5HQXA 3I99A 4PVEA 3W8WA 1JROA 3NRZB 1W1KA 2W54A 2QPMA 5AE3A 4BBYA 1AHVA 5HHZA 2YVSA 1N5WC 1W1SA 3HRDC 5FXFA 3C0PA 3S1DA 2Y3RA 2EXRA 5FXDA 1W1RA 1WYGA 2W3RA 4UD8A 2W55A 2BVHA 2QKNA 2GQUA 3TSHA 2Y4GA 1W1JA 4ZOHB 3S1CA 2W3SA 2OAIA 2Y3SA 1I19A 1W1MA 3DEDA 3LAEA 4EC3A 1W1LA 3RJ8A 1ZXIC 4ML8A 3NVYB 1QLUA 3S1FA 1DIQA 4PVHA 1WVEA 2P13A 5FXPA 3PQBA 3AM9A 2BVFA 3FW7A 3HSUA 1VDVA 3EJDB 2O3GA 3FW9A 2UUUA 1MBBA 1T3QC 3ETRB 1DZNA 3PM9A 1MBTA 3NVZB 1RM6B 1FO4A 1HSKA 2VFVA 3EUB3 3W8ZA 1FIQB 5AE2A 1FFUC 4BC9A 5I1VA 2MBRA 3JS8A 1WVFA 3TX1A 2AXRA 5AWVA 2PLIA 3GSYA 4PVJA 5L6FA 5L6GA 1ZR6A 2NQWA 1E8GA 2Y08A 2PLSA 1N63C 1UXYA 2GQTA 4OALA 2Q85A 4HG0A 1N62C 2IPIA 3NVVB 1QLTA 5ADZA 1N5XA 2P4PA 4XLOA 3AN1A 1E8FA 3D2DA
chains in the Genus database with same CATH topology
1F0XA 4O95A 2P3HA 4BCAA 5G5HB 1N61C 3POPA 1V97A 1AHUA 4PWCA 1DIIA 2UUVA 5AE1A 3NVWB 5K8EA 2VFRA 4PYTA 4JB1A 2E3TA 5D79A 3VTEA 5G5GB 2R2ZA 2VFSA 2VFTA 2Q4WA 3AMZA 4JAYA 3DQ0A 5HMRA 1AHZA 1W1QA 1E8HA 1N60C 3BW7A 3RJAA 3TSJA 2VFUA 4PVKA 5FXEA 5I1WA 2VAOA 3D2JA 3LLBA 1E0YA 3D2HA 4PWBA 4PZFA 4MLAA 3W8XA 2BVGA 3NS1B 3FWAA 2WDWA 3KJMA 3SR6B 2RK5A 1W1OA 2I0KA 4DNSA 1VAOA 3S1EA 1SB3B 3B9JB 1JRPA 4BC7A 1FFVC 2R8DA 3FW8A 5HQXA 3I99A 4PVEA 3W8WA 1JROA 3NRZB 1W1KA 2W54A 2QPMA 5AE3A 4BBYA 1AHVA 5HHZA 2YVSA 1N5WC 1W1SA 3HRDC 5FXFA 3C0PA 3S1DA 2Y3RA 2EXRA 5FXDA 1W1RA 1WYGA 2W3RA 4UD8A 2W55A 2BVHA 2QKNA 2GQUA 3TSHA 2Y4GA 1W1JA 4ZOHB 3S1CA 2W3SA 2OAIA 2Y3SA 1I19A 1W1MA 3DEDA 3LAEA 4EC3A 1W1LA 3RJ8A 1ZXIC 4ML8A 3NVYB 1QLUA 3S1FA 1DIQA 4PVHA 1WVEA 2P13A 5FXPA 3PQBA 3AM9A 2BVFA 3FW7A 3HSUA 1VDVA 2O3GA 3FW9A 2UUUA 1MBBA 1T3QC 3ETRB 1DZNA 3PM9A 1MBTA 3NVZB 1RM6B 1FO4A 1HSKA 2VFVA 3EUB3 3W8ZA 1FIQB 5AE2A 1FFUC 4BC9A 5I1VA 2MBRA 3JS8A 1WVFA 3TX1A 2AXRA 5AWVA 2PLIA 3GSYA 4PVJA 5L6FA 5L6GA 1ZR6A 2NQWA 1E8GA 2Y08A 2PLSA 1N63C 1UXYA 2GQTA 4OALA 2Q85A 4HG0A 1N62C 2IPIA 3NVVB 1QLTA 5ADZA 1N5XA 2P4PA 4XLOA 3AN1A 1E8FA 3D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F0X A;  4O95 A;  2P3H A;  4BCA A;  5G5H B;  1N61 C;  1V97 A;  1AHU A;  4PWC A;  1DII A;  5AE1 A;  3NVW B;  2VFR A;  4PYT A;  4JB1 A;  2E3T A;  5D79 A;  3VTE A;  5G5G B;  2R2Z A;  2VFS A;  2VFT A;  2Q4W A;  3AMZ A;  4JAY A;  3DQ0 A;  5HMR A;  1AHZ A;  1W1Q A;  1E8H A;  1N60 C;  3BW7 A;  3TSJ A;  2VFU A;  4PVK A;  5FXE A;  2VAO A;  3D2J A;  3LLB A;  1E0Y A;  3D2H A;  4PWB A;  4PZF A;  4MLA A;  3W8X A;  2BVG A;  3NS1 B;  3FWA A;  3KJM A;  3SR6 B;  2RK5 A;  1W1O A;  2I0K A;  4DNS A;  1VAO A;  3S1E A;  1SB3 B;  3B9J B;  1JRP A;  4BC7 A;  1FFV C;  2R8D A;  3FW8 A;  5HQX A;  3I99 A;  4PVE A;  3W8W A;  1JRO A;  3NRZ B;  1W1K A;  2W54 A;  2QPM A;  5AE3 A;  4BBY A;  1AHV A;  5HHZ A;  2YVS A;  1N5W C;  1W1S A;  3HRD C;  5FXF A;  3C0P A;  3S1D A;  2EXR A;  5FXD A;  1W1R A;  1WYG A;  2W3R A;  4UD8 A;  2W55 A;  2BVH A;  2QKN A;  2GQU A;  3TSH A;  1W1J A;  4ZOH B;  3S1C A;  2W3S A;  2OAI A;  1I19 A;  1W1M A;  3DED A;  3LAE A;  4EC3 A;  1W1L A;  1ZXI C;  4ML8 A;  3NVY B;  1QLU A;  3S1F A;  1DIQ A;  4PVH A;  1WVE A;  2P13 A;  5FXP A;  3AM9 A;  2BVF A;  3FW7 A;  1VDV A;  2O3G A;  3FW9 A;  1MBB A;  1T3Q C;  3ETR B;  1DZN A;  3PM9 A;  1MBT A;  3NVZ B;  1RM6 B;  1FO4 A;  1HSK A;  2VFV A;  3EUB 3;  3W8Z A;  1FIQ B;  5AE2 A;  1FFU C;  4BC9 A;  2MBR A;  3JS8 A;  1WVF A;  3TX1 A;  2AXR A;  2PLI A;  3GSY A;  4PVJ A;  1ZR6 A;  2NQW A;  1E8G A;  2PLS A;  1N63 C;  1UXY A;  2GQT A;  4OAL A;  2Q85 A;  4HG0 A;  1N62 C;  3NVV B;  1QLT A;  5ADZ A;  1N5X A;  2P4P A;  4XLO A;  3AN1 A;  1E8F A;  3D2D A; 
#chains in the Genus database with same CATH topology
 1F0X A;  4O95 A;  2P3H A;  4BCA A;  5G5H B;  1N61 C;  3POP A;  1V97 A;  1AHU A;  4PWC A;  1DII A;  2UUV A;  5AE1 A;  3EJB B;  3NVW B;  5K8E A;  2VFR A;  4PYT A;  4JB1 A;  3EJE B;  2E3T A;  5D79 A;  3VTE A;  5G5G B;  2R2Z A;  2VFS A;  2VFT A;  2Q4W A;  3AMZ A;  4JAY A;  3DQ0 A;  5HMR A;  1AHZ A;  1W1Q A;  1E8H A;  1N60 C;  3BW7 A;  3RJA A;  3TSJ A;  2VFU A;  4PVK A;  5FXE A;  5I1W A;  2VAO A;  3D2J A;  3LLB A;  1E0Y A;  3D2H A;  4PWB A;  4PZF A;  4MLA A;  3W8X A;  2BVG A;  3NS1 B;  3FWA A;  2WDW A;  3KJM A;  3SR6 B;  2RK5 A;  1W1O A;  2I0K A;  4DNS A;  1VAO A;  3S1E A;  1SB3 B;  3B9J B;  1JRP A;  4BC7 A;  1FFV C;  2R8D A;  3FW8 A;  5HQX A;  3I99 A;  4PVE A;  3W8W A;  1JRO A;  3NRZ B;  1W1K A;  2W54 A;  2QPM A;  5AE3 A;  4BBY A;  1AHV A;  5HHZ A;  2YVS A;  1N5W C;  1W1S A;  3HRD C;  5FXF A;  3C0P A;  3S1D A;  2Y3R A;  2EXR A;  5FXD A;  1W1R A;  1WYG A;  2W3R A;  4UD8 A;  2W55 A;  2BVH A;  2QKN A;  2GQU A;  3TSH A;  2Y4G A;  1W1J A;  4ZOH B;  3S1C A;  2W3S A;  2OAI A;  2Y3S A;  1I19 A;  1W1M A;  3DED A;  3LAE A;  4EC3 A;  1W1L A;  3RJ8 A;  1ZXI C;  4ML8 A;  3NVY B;  1QLU A;  3S1F A;  1DIQ A;  4PVH A;  1WVE A;  2P13 A;  5FXP A;  3PQB A;  3AM9 A;  2BVF A;  3FW7 A;  3HSU A;  1VDV A;  3EJD B;  2O3G A;  3FW9 A;  2UUU A;  1MBB A;  1T3Q C;  3ETR B;  1DZN A;  3PM9 A;  1MBT A;  3NVZ B;  1RM6 B;  1FO4 A;  1HSK A;  2VFV A;  3EUB 3;  3W8Z A;  1FIQ B;  5AE2 A;  1FFU C;  4BC9 A;  5I1V A;  2MBR A;  3JS8 A;  1WVF A;  3TX1 A;  2AXR A;  5AWV A;  2PLI A;  3GSY A;  4PVJ A;  5L6F A;  5L6G A;  1ZR6 A;  2NQW A;  1E8G A;  2Y08 A;  2PLS A;  1N63 C;  1UXY A;  2GQT A;  4OAL A;  2Q85 A;  4HG0 A;  1N62 C;  2IPI A;  3NVV B;  1QLT A;  5ADZ A;  1N5X A;  2P4P A;  4XLO A;  3AN1 A;  1E8F A;  3D2D A; 
#chains in the Genus database with same CATH homology
 1F0X A;  4O95 A;  2P3H A;  4BCA A;  5G5H B;  1N61 C;  3POP A;  1V97 A;  1AHU A;  4PWC A;  1DII A;  2UUV A;  5AE1 A;  3NVW B;  5K8E A;  2VFR A;  4PYT A;  4JB1 A;  2E3T A;  5D79 A;  3VTE A;  5G5G B;  2R2Z A;  2VFS A;  2VFT A;  2Q4W A;  3AMZ A;  4JAY A;  3DQ0 A;  5HMR A;  1AHZ A;  1W1Q A;  1E8H A;  1N60 C;  3BW7 A;  3RJA A;  3TSJ A;  2VFU A;  4PVK A;  5FXE A;  5I1W A;  2VAO A;  3D2J A;  3LLB A;  1E0Y A;  3D2H A;  4PWB A;  4PZF A;  4MLA A;  3W8X A;  2BVG A;  3NS1 B;  3FWA A;  2WDW A;  3KJM A;  3SR6 B;  2RK5 A;  1W1O A;  2I0K A;  4DNS A;  1VAO A;  3S1E A;  1SB3 B;  3B9J B;  1JRP A;  4BC7 A;  1FFV C;  2R8D A;  3FW8 A;  5HQX A;  3I99 A;  4PVE A;  3W8W A;  1JRO A;  3NRZ B;  1W1K A;  2W54 A;  2QPM A;  5AE3 A;  4BBY A;  1AHV A;  5HHZ A;  2YVS A;  1N5W C;  1W1S A;  3HRD C;  5FXF A;  3C0P A;  3S1D A;  2Y3R A;  2EXR A;  5FXD A;  1W1R A;  1WYG A;  2W3R A;  4UD8 A;  2W55 A;  2BVH A;  2QKN A;  2GQU A;  3TSH A;  2Y4G A;  1W1J A;  4ZOH B;  3S1C A;  2W3S A;  2OAI A;  2Y3S A;  1I19 A;  1W1M A;  3DED A;  3LAE A;  4EC3 A;  1W1L A;  3RJ8 A;  1ZXI C;  4ML8 A;  3NVY B;  1QLU A;  3S1F A;  1DIQ A;  4PVH A;  1WVE A;  2P13 A;  5FXP A;  3PQB A;  3AM9 A;  2BVF A;  3FW7 A;  3HSU A;  1VDV A;  2O3G A;  3FW9 A;  2UUU A;  1MBB A;  1T3Q C;  3ETR B;  1DZN A;  3PM9 A;  1MBT A;  3NVZ B;  1RM6 B;  1FO4 A;  1HSK A;  2VFV A;  3EUB 3;  3W8Z A;  1FIQ B;  5AE2 A;  1FFU C;  4BC9 A;  5I1V A;  2MBR A;  3JS8 A;  1WVF A;  3TX1 A;  2AXR A;  5AWV A;  2PLI A;  3GSY A;  4PVJ A;  5L6F A;  5L6G A;  1ZR6 A;  2NQW A;  1E8G A;  2Y08 A;  2PLS A;  1N63 C;  1UXY A;  2GQT A;  4OAL A;  2Q85 A;  4HG0 A;  1N62 C;  2IPI A;  3NVV B;  1QLT A;  5ADZ A;  1N5X A;  2P4P A;  4XLO A;  3AN1 A;  1E8F A;  3D2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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