3I99A

The crystal structure of the udp-n-acetylenolpyruvoylglucosamine reductase from the vibrio cholerae o1 biovar tor
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
340
structure length
340
Chain Sequence
TTMQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCHYTGMIVVNRLNGIEHQQDDDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTVKRLTMEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRMEKLPDPAVMGNAGSFFKNPVISQQAFARLQIEHPDVVAYPAEQGVKVAAGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLMLAADIQQRVFNCYGIELEHEVRFIGESEETN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of the UDP-N-acetylenolpyruvoylglucosamine reductase from the Vibrio cholerae O1 biovar Tor
rcsb
molecule tags Oxidoreductase
source organism Vibrio cholerae
molecule keywords UDP-N-acetylenolpyruvoylglucosamine reductase
total genus 90
structure length 340
sequence length 340
ec nomenclature ec 1.3.1.98: UDP-N-acetylmuramate dehydrogenase.
pdb deposition date 2009-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3i99A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3i99A02
3.90.78.10 Alpha Beta Alpha-Beta Complex Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 3i99A03
4ZOHB 1W1JA 4XLOA 3KJMA 4PVKA 2VFUA 1FFUC 2I0KA 1F0XA 3W8WA 4EC3A 3D2HA 1N5WC 5HMRA 4PVJA 5HHZA 3S1DA 1E0YA 2GQTA 1ZXIC 2W3SA 5G5HB 3LLBA 3NVVB 2GQUA 2P13A 3W8ZA 1W1OA 3D2DA 3I99A 1FFVC 1N61C 4JB1A 4BC9A 2EXRA 2BVGA 3C0PA 4PVEA 3TSJA 2OAIA 3SR6B 5D79A 5ADZA 1W1QA 1N63C 3AMZA 4ML8A 1T3QC 3GSYA 3HRDC 1QLUA 3EUB3 3NRZB 2P3HA 2VAOA 1FO4A 1W1RA 1AHVA 4JAYA 2PLIA 3S1FA 1WYGA 4BC7A 1RM6B 3DEDA 5FXFA 3S1EA 4PVHA 3S1CA 2VFRA 1DIQA 3TX1A 2BVFA 2Q4WA 1AHZA 4PYTA 4HG0A 3JS8A 1VAOA 1VDVA 1MBBA 3BW7A 1JROA 1E8HA 2MBRA 2W3RA 4DNSA 2W55A 1HSKA 4BBYA 1UXYA 3FWAA 2W54A 1QLTA 4PZFA 2R2ZA 3DQ0A 5AE2A 2R8DA 5G5GB 1W1MA 2AXRA 5FXEA 2VFVA 3D2JA 1V97A 2BVHA 1N60C 4UD8A 3FW7A 2P4PA 2QKNA 3LAEA 1DZNA 1SB3B 1W1LA 3FW8A 1WVFA 2YVSA 2E3TA 1WVEA 1FIQB 1I19A 3PM9A 3AM9A 3NS1B 2Q85A 3TSHA 3NVYB 3FW9A 4BCAA 3AN1A 1JRPA 3W8XA 2PLSA 1N5XA 2VFSA 1MBTA 1AHUA 1E8FA 4PWBA 1W1KA 4MLAA 2O3GA 2RK5A 3B9JB 5HQXA 5AE1A 4OALA 4PWCA 1E8GA 3ETRB 2NQWA 1N62C 3NVWB 5AE3A 3VTEA 4O95A 1ZR6A 3NVZB 2VFTA 1W1SA 2QPMA 5FXDA 1DIIA 5FXPA
chains in the Genus database with same CATH superfamily
4ZOHB 5I1VA 1W1JA 5K8EA 4XLOA 3KJMA 4PVKA 2VFUA 1FFUC 2I0KA 1F0XA 3W8WA 4EC3A 3D2HA 1N5WC 5HMRA 4PVJA 5HHZA 3S1DA 1E0YA 2GQTA 1ZXIC 2W3SA 5G5HB 3NVVB 3LLBA 2GQUA 2P13A 3W8ZA 1W1OA 3D2DA 3EJDB 3I99A 1FFVC 1N61C 4JB1A 4BC9A 2EXRA 2BVGA 3C0PA 4PVEA 3HSUA 5L6FA 2Y3SA 3TSJA 2OAIA 3SR6B 2Y3RA 5D79A 5ADZA 1W1QA 1N63C 3AMZA 4ML8A 1T3QC 3GSYA 3EJEB 3HRDC 1QLUA 3EUB3 2UUUA 3EJBB 3NRZB 2P3HA 2VAOA 1FO4A 1W1RA 1AHVA 4JAYA 2PLIA 3S1FA 1WYGA 4BC7A 1RM6B 3RJAA 3DEDA 5FXFA 3S1EA 4PVHA 3S1CA 2VFRA 1DIQA 3TX1A 2BVFA 2Q4WA 1AHZA 4PYTA 4HG0A 3JS8A 1VAOA 1VDVA 2Y4GA 1MBBA 3BW7A 1JROA 1E8HA 2MBRA 2W3RA 4DNSA 3PQBA 2W55A 5I1WA 2IPIA 1HSKA 4BBYA 1UXYA 3FWAA 2UUVA 2W54A 5L6GA 1QLTA 2Y08A 4PZFA 2R2ZA 3DQ0A 5AE2A 2R8DA 5G5GB 3POPA 1W1MA 2AXRA 5FXEA 2VFVA 3D2JA 1V97A 2BVHA 1N60C 4UD8A 3FW7A 2WDWA 2P4PA 2QKNA 3LAEA 1DZNA 1SB3B 1W1LA 3FW8A 1WVFA 2YVSA 2E3TA 5AWVA 1WVEA 1FIQB 1I19A 3PM9A 3AM9A 3NS1B 2Q85A 3TSHA 3NVYB 3FW9A 4BCAA 3AN1A 1JRPA 3W8XA 2PLSA 1N5XA 2VFSA 1MBTA 1AHUA 1E8FA 4PWBA 1W1KA 4MLAA 2O3GA 2RK5A 3B9JB 5HQXA 5AE1A 4OALA 4PWCA 1E8GA 3ETRB 2NQWA 1N62C 3NVWB 5AE3A 3VTEA 4O95A 1ZR6A 3NVZB 2VFTA 1W1SA 2QPMA 5FXDA 1DIIA 3RJ8A 5FXPA
chains in the Genus database with same CATH topology
4ZOHB 5I1VA 1W1JA 5K8EA 4XLOA 3KJMA 4PVKA 2VFUA 1FFUC 2I0KA 1F0XA 3W8WA 4EC3A 3D2HA 1N5WC 5HMRA 4PVJA 5HHZA 3S1DA 1E0YA 2GQTA 1ZXIC 2W3SA 5G5HB 3LLBA 3NVVB 2GQUA 2P13A 3W8ZA 1W1OA 3D2DA 3I99A 1FFVC 1N61C 4JB1A 4BC9A 2EXRA 2BVGA 3C0PA 4PVEA 3HSUA 5L6FA 2Y3SA 3TSJA 2OAIA 3SR6B 2Y3RA 5D79A 5ADZA 1W1QA 1N63C 3AMZA 4ML8A 1T3QC 3GSYA 3HRDC 1QLUA 3EUB3 2UUUA 3NRZB 2P3HA 2VAOA 1FO4A 1W1RA 1AHVA 4JAYA 2PLIA 3S1FA 1WYGA 4BC7A 1RM6B 3RJAA 3DEDA 5FXFA 3S1EA 4PVHA 3S1CA 2VFRA 1DIQA 3TX1A 2BVFA 2Q4WA 1AHZA 4PYTA 4HG0A 3JS8A 1VAOA 1VDVA 2Y4GA 1MBBA 3BW7A 1JROA 1E8HA 2MBRA 2W3RA 4DNSA 3PQBA 2W55A 5I1WA 2IPIA 1HSKA 4BBYA 1UXYA 3FWAA 2UUVA 2W54A 5L6GA 1QLTA 2Y08A 4PZFA 2R2ZA 3DQ0A 5AE2A 2R8DA 5G5GB 3POPA 1W1MA 2AXRA 5FXEA 2VFVA 3D2JA 1V97A 2BVHA 1N60C 4UD8A 3FW7A 2WDWA 2P4PA 2QKNA 3LAEA 1DZNA 1SB3B 1W1LA 3FW8A 1WVFA 2YVSA 2E3TA 5AWVA 1WVEA 1FIQB 1I19A 3PM9A 3AM9A 3NS1B 2Q85A 3TSHA 3NVYB 3FW9A 4BCAA 3AN1A 1JRPA 3W8XA 2PLSA 1N5XA 2VFSA 1MBTA 1AHUA 1E8FA 4PWBA 1W1KA 4MLAA 2O3GA 2RK5A 3B9JB 5HQXA 5AE1A 4OALA 4PWCA 1E8GA 3ETRB 2NQWA 1N62C 3NVWB 5AE3A 3VTEA 4O95A 1ZR6A 3NVZB 2VFTA 1W1SA 2QPMA 5FXDA 1DIIA 3RJ8A 5FXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZOH B;  1W1J A;  4XLO A;  3KJM A;  4PVK A;  2VFU A;  1FFU C;  2I0K A;  1F0X A;  3W8W A;  4EC3 A;  3D2H A;  1N5W C;  5HMR A;  4PVJ A;  5HHZ A;  3S1D A;  1E0Y A;  2GQT A;  1ZXI C;  2W3S A;  5G5H B;  3LLB A;  3NVV B;  2GQU A;  2P13 A;  3W8Z A;  1W1O A;  3D2D A;  3I99 A;  1FFV C;  1N61 C;  4JB1 A;  4BC9 A;  2EXR A;  2BVG A;  3C0P A;  4PVE A;  3TSJ A;  2OAI A;  3SR6 B;  5D79 A;  5ADZ A;  1W1Q A;  1N63 C;  3AMZ A;  4ML8 A;  1T3Q C;  3GSY A;  3HRD C;  1QLU A;  3EUB 3;  3NRZ B;  2P3H A;  2VAO A;  1FO4 A;  1W1R A;  1AHV A;  4JAY A;  2PLI A;  3S1F A;  1WYG A;  4BC7 A;  1RM6 B;  3DED A;  5FXF A;  3S1E A;  4PVH A;  3S1C A;  2VFR A;  1DIQ A;  3TX1 A;  2BVF A;  2Q4W A;  1AHZ A;  4PYT A;  4HG0 A;  3JS8 A;  1VAO A;  1VDV A;  1MBB A;  3BW7 A;  1JRO A;  1E8H A;  2MBR A;  2W3R A;  4DNS A;  2W55 A;  1HSK A;  4BBY A;  1UXY A;  3FWA A;  2W54 A;  1QLT A;  4PZF A;  2R2Z A;  3DQ0 A;  5AE2 A;  2R8D A;  5G5G B;  1W1M A;  2AXR A;  5FXE A;  2VFV A;  3D2J A;  1V97 A;  2BVH A;  1N60 C;  4UD8 A;  3FW7 A;  2P4P A;  2QKN A;  3LAE A;  1DZN A;  1SB3 B;  1W1L A;  3FW8 A;  1WVF A;  2YVS A;  2E3T A;  1WVE A;  1FIQ B;  1I19 A;  3PM9 A;  3AM9 A;  3NS1 B;  2Q85 A;  3TSH A;  3NVY B;  3FW9 A;  4BCA A;  3AN1 A;  1JRP A;  3W8X A;  2PLS A;  1N5X A;  2VFS A;  1MBT A;  1AHU A;  1E8F A;  4PWB A;  1W1K A;  4MLA A;  2O3G A;  2RK5 A;  3B9J B;  5HQX A;  5AE1 A;  4OAL A;  4PWC A;  1E8G A;  3ETR B;  2NQW A;  1N62 C;  3NVW B;  5AE3 A;  3VTE A;  4O95 A;  1ZR6 A;  3NVZ B;  2VFT A;  1W1S A;  2QPM A;  5FXD A;  1DII A;  5FXP A; 
#chains in the Genus database with same CATH topology
 4ZOH B;  5I1V A;  1W1J A;  5K8E A;  4XLO A;  3KJM A;  4PVK A;  2VFU A;  1FFU C;  2I0K A;  1F0X A;  3W8W A;  4EC3 A;  3D2H A;  1N5W C;  5HMR A;  4PVJ A;  5HHZ A;  3S1D A;  1E0Y A;  2GQT A;  1ZXI C;  2W3S A;  5G5H B;  3NVV B;  3LLB A;  2GQU A;  2P13 A;  3W8Z A;  1W1O A;  3D2D A;  3EJD B;  3I99 A;  1FFV C;  1N61 C;  4JB1 A;  4BC9 A;  2EXR A;  2BVG A;  3C0P A;  4PVE A;  3HSU A;  5L6F A;  2Y3S A;  3TSJ A;  2OAI A;  3SR6 B;  2Y3R A;  5D79 A;  5ADZ A;  1W1Q A;  1N63 C;  3AMZ A;  4ML8 A;  1T3Q C;  3GSY A;  3EJE B;  3HRD C;  1QLU A;  3EUB 3;  2UUU A;  3EJB B;  3NRZ B;  2P3H A;  2VAO A;  1FO4 A;  1W1R A;  1AHV A;  4JAY A;  2PLI A;  3S1F A;  1WYG A;  4BC7 A;  1RM6 B;  3RJA A;  3DED A;  5FXF A;  3S1E A;  4PVH A;  3S1C A;  2VFR A;  1DIQ A;  3TX1 A;  2BVF A;  2Q4W A;  1AHZ A;  4PYT A;  4HG0 A;  3JS8 A;  1VAO A;  1VDV A;  2Y4G A;  1MBB A;  3BW7 A;  1JRO A;  1E8H A;  2MBR A;  2W3R A;  4DNS A;  3PQB A;  2W55 A;  5I1W A;  2IPI A;  1HSK A;  4BBY A;  1UXY A;  3FWA A;  2UUV A;  2W54 A;  5L6G A;  1QLT A;  2Y08 A;  4PZF A;  2R2Z A;  3DQ0 A;  5AE2 A;  2R8D A;  5G5G B;  3POP A;  1W1M A;  2AXR A;  5FXE A;  2VFV A;  3D2J A;  1V97 A;  2BVH A;  1N60 C;  4UD8 A;  3FW7 A;  2WDW A;  2P4P A;  2QKN A;  3LAE A;  1DZN A;  1SB3 B;  1W1L A;  3FW8 A;  1WVF A;  2YVS A;  2E3T A;  5AWV A;  1WVE A;  1FIQ B;  1I19 A;  3PM9 A;  3AM9 A;  3NS1 B;  2Q85 A;  3TSH A;  3NVY B;  3FW9 A;  4BCA A;  3AN1 A;  1JRP A;  3W8X A;  2PLS A;  1N5X A;  2VFS A;  1MBT A;  1AHU A;  1E8F A;  4PWB A;  1W1K A;  4MLA A;  2O3G A;  2RK5 A;  3B9J B;  5HQX A;  5AE1 A;  4OAL A;  4PWC A;  1E8G A;  3ETR B;  2NQW A;  1N62 C;  3NVW B;  5AE3 A;  3VTE A;  4O95 A;  1ZR6 A;  3NVZ B;  2VFT A;  1W1S A;  2QPM A;  5FXD A;  1DII A;  3RJ8 A;  5FXP A; 
#chains in the Genus database with same CATH homology
 4ZOH B;  5I1V A;  1W1J A;  5K8E A;  4XLO A;  3KJM A;  4PVK A;  2VFU A;  1FFU C;  2I0K A;  1F0X A;  3W8W A;  4EC3 A;  3D2H A;  1N5W C;  5HMR A;  4PVJ A;  5HHZ A;  3S1D A;  1E0Y A;  2GQT A;  1ZXI C;  2W3S A;  5G5H B;  3LLB A;  3NVV B;  2GQU A;  2P13 A;  3W8Z A;  1W1O A;  3D2D A;  3I99 A;  1FFV C;  1N61 C;  4JB1 A;  4BC9 A;  2EXR A;  2BVG A;  3C0P A;  4PVE A;  3HSU A;  5L6F A;  2Y3S A;  3TSJ A;  2OAI A;  3SR6 B;  2Y3R A;  5D79 A;  5ADZ A;  1W1Q A;  1N63 C;  3AMZ A;  4ML8 A;  1T3Q C;  3GSY A;  3HRD C;  1QLU A;  3EUB 3;  2UUU A;  3NRZ B;  2P3H A;  2VAO A;  1FO4 A;  1W1R A;  1AHV A;  4JAY A;  2PLI A;  3S1F A;  1WYG A;  4BC7 A;  1RM6 B;  3RJA A;  3DED A;  5FXF A;  3S1E A;  4PVH A;  3S1C A;  2VFR A;  1DIQ A;  3TX1 A;  2BVF A;  2Q4W A;  1AHZ A;  4PYT A;  4HG0 A;  3JS8 A;  1VAO A;  1VDV A;  2Y4G A;  1MBB A;  3BW7 A;  1JRO A;  1E8H A;  2MBR A;  2W3R A;  4DNS A;  3PQB A;  2W55 A;  5I1W A;  2IPI A;  1HSK A;  4BBY A;  1UXY A;  3FWA A;  2UUV A;  2W54 A;  5L6G A;  1QLT A;  2Y08 A;  4PZF A;  2R2Z A;  3DQ0 A;  5AE2 A;  2R8D A;  5G5G B;  3POP A;  1W1M A;  2AXR A;  5FXE A;  2VFV A;  3D2J A;  1V97 A;  2BVH A;  1N60 C;  4UD8 A;  3FW7 A;  2WDW A;  2P4P A;  2QKN A;  3LAE A;  1DZN A;  1SB3 B;  1W1L A;  3FW8 A;  1WVF A;  2YVS A;  2E3T A;  5AWV A;  1WVE A;  1FIQ B;  1I19 A;  3PM9 A;  3AM9 A;  3NS1 B;  2Q85 A;  3TSH A;  3NVY B;  3FW9 A;  4BCA A;  3AN1 A;  1JRP A;  3W8X A;  2PLS A;  1N5X A;  2VFS A;  1MBT A;  1AHU A;  1E8F A;  4PWB A;  1W1K A;  4MLA A;  2O3G A;  2RK5 A;  3B9J B;  5HQX A;  5AE1 A;  4OAL A;  4PWC A;  1E8G A;  3ETR B;  2NQW A;  1N62 C;  3NVW B;  5AE3 A;  3VTE A;  4O95 A;  1ZR6 A;  3NVZ B;  2VFT A;  1W1S A;  2QPM A;  5FXD A;  1DII A;  3RJ8 A;  5FXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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