5FXDA

Crystal structure of eugenol oxidase in complex with isoeugenol
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PROBABLE VANILLYL-ALCOHOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
molecule tags Oxidoreductase
total genus 181
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxdA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxdA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxdA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxdA03
4PVKA 3NVVB 3AN1A 2YVSA 3FW7A 2Q85A 1RM6B 1W1MA 1WYGA 2GQUA 2OAIA 3NS1B 3BW7A 2W54A 3FWAA 1N62C 1W1SA 3NVWB 4PYTA 5FXEA 2I0KA 3W8XA 2QPMA 1DIQA 3D2HA 2BVFA 1I19A 3LLBA 1FFUC 5HQXA 5AE2A 1HSKA 5HMRA 5ADZA 1FO4A 1W1OA 3DEDA 2VAOA 3NVZB 1N61C 4PVHA 4PVEA 1N60C 2P3HA 1AHUA 3B9JB 3LAEA 1E0YA 4XLOA 3ETRB 2BVGA 3AMZA 1N63C 3TSJA 1QLTA 4HG0A 1N5XA 1W1JA 3D2DA 1FFVC 2BVHA 2MBRA 1WVEA 3FW9A 1AHZA 1UXYA 2EXRA 4O95A 4BC9A 2VFRA 2VFTA 3PM9A 1DIIA 4BBYA 4UD8A 5D79A 2W3SA 4DNSA 3GSYA 1JRPA 2AXRA 3DQ0A 3C0PA 3KJMA 1V97A 2QKNA 4EC3A 2E3TA 3W8WA 1E8HA 1ZXIC 3VTEA 3HRDC 4PWCA 2W3RA 1W1KA 2NQWA 1W1QA 1T3QC 1VAOA 1WVFA 4JB1A 2P4PA 3TSHA 1FIQB 1W1RA 3S1FA 2RK5A 3W8ZA 5G5HB 5HHZA 1E8GA 2PLSA 2VFUA 5FXDA 3EUB3 1W1LA 2VFVA 3SR6B 4ML8A 2VFSA 1AHVA 3I99A 4JAYA 4PVJA 1F0XA 1VDVA 2R2ZA 2R8DA 3D2JA 4BCAA 3FW8A 2GQTA 1JROA 5G5GB 3S1EA 2PLIA 1MBTA 1N5WC 4ZOHB 4OALA 4PWBA 3NVYB 1QLUA 4BC7A 2P13A 3AM9A 1E8FA 5FXPA 1MBBA 4MLAA 2Q4WA 3S1DA 3S1CA 4PZFA 3NRZB 1DZNA 1SB3B 5AE3A 3TX1A 5FXFA 2W55A 3JS8A 5AE1A 2O3GA 1ZR6A
chains in the Genus database with same CATH superfamily
3NVVB 4PVKA 3AN1A 2YVSA 3FW7A 2Q85A 1RM6B 3POPA 1W1MA 1WYGA 2GQUA 2OAIA 5AWVA 3NS1B 3BW7A 2W54A 3FWAA 1N62C 1W1SA 3NVWB 4PYTA 5FXEA 2I0KA 3W8XA 2QPMA 3EJBB 1DIQA 3D2HA 2BVFA 1I19A 3LLBA 1FFUC 5HQXA 5K8EA 5AE2A 1HSKA 5HMRA 5ADZA 1FO4A 1W1OA 3DEDA 5L6FA 2VAOA 2Y3SA 3NVZB 2UUVA 1N61C 4PVHA 4PVEA 1N60C 2P3HA 1AHUA 3B9JB 3LAEA 1E0YA 4XLOA 3ETRB 2BVGA 3AMZA 2UUUA 1N63C 3TSJA 1QLTA 4HG0A 1N5XA 1W1JA 3D2DA 1FFVC 2BVHA 2MBRA 1WVEA 3FW9A 3EJDB 1AHZA 1UXYA 2EXRA 4O95A 4BC9A 2VFRA 2VFTA 3PM9A 1DIIA 3PQBA 4BBYA 4UD8A 5D79A 3RJAA 2W3SA 4DNSA 3GSYA 1JRPA 2WDWA 5I1VA 2AXRA 3DQ0A 3C0PA 3KJMA 1V97A 2Y08A 2QKNA 4EC3A 2E3TA 3W8WA 1E8HA 1ZXIC 3VTEA 2IPIA 3HRDC 4PWCA 2W3RA 1W1KA 2NQWA 1W1QA 1T3QC 2Y4GA 1VAOA 1WVFA 4JB1A 3EJEB 2P4PA 3TSHA 1FIQB 1W1RA 3HSUA 3S1FA 2RK5A 3W8ZA 5G5HB 5HHZA 1E8GA 2PLSA 2VFUA 5FXDA 3EUB3 1W1LA 2VFVA 5I1WA 3SR6B 4ML8A 2VFSA 1AHVA 2Y3RA 3I99A 4JAYA 4PVJA 1F0XA 1VDVA 2R2ZA 2R8DA 3D2JA 4BCAA 3FW8A 2GQTA 1JROA 5G5GB 3S1EA 3RJ8A 2PLIA 1MBTA 1N5WC 4ZOHB 4OALA 4PWBA 3NVYB 1QLUA 4BC7A 2P13A 3AM9A 1E8FA 5FXPA 1MBBA 4MLAA 2Q4WA 3S1DA 3S1CA 4PZFA 3NRZB 1DZNA 1SB3B 5AE3A 3TX1A 5FXFA 2W55A 5L6GA 3JS8A 5AE1A 2O3GA 1ZR6A
chains in the Genus database with same CATH topology
4PVKA 3NVVB 3AN1A 2YVSA 3FW7A 2Q85A 1RM6B 3POPA 1W1MA 1WYGA 2GQUA 2OAIA 5AWVA 3NS1B 3BW7A 2W54A 3FWAA 1N62C 1W1SA 3NVWB 4PYTA 5FXEA 2I0KA 3W8XA 2QPMA 1DIQA 3D2HA 2BVFA 1I19A 3LLBA 1FFUC 5HQXA 5K8EA 5AE2A 1HSKA 5HMRA 5ADZA 1FO4A 1W1OA 3DEDA 5L6FA 2VAOA 2Y3SA 3NVZB 2UUVA 1N61C 4PVHA 4PVEA 1N60C 2P3HA 1AHUA 3B9JB 3LAEA 1E0YA 4XLOA 3ETRB 2BVGA 3AMZA 2UUUA 1N63C 3TSJA 1QLTA 4HG0A 1N5XA 1W1JA 3D2DA 1FFVC 2BVHA 2MBRA 1WVEA 3FW9A 1AHZA 1UXYA 2EXRA 4O95A 4BC9A 2VFRA 2VFTA 3PM9A 1DIIA 3PQBA 4BBYA 4UD8A 5D79A 3RJAA 2W3SA 4DNSA 3GSYA 1JRPA 2WDWA 5I1VA 2AXRA 3DQ0A 3C0PA 3KJMA 1V97A 2Y08A 2QKNA 4EC3A 2E3TA 3W8WA 1E8HA 1ZXIC 3VTEA 2IPIA 3HRDC 4PWCA 2W3RA 1W1KA 2NQWA 1W1QA 1T3QC 2Y4GA 1VAOA 1WVFA 4JB1A 2P4PA 3TSHA 1FIQB 1W1RA 3HSUA 3S1FA 2RK5A 3W8ZA 5G5HB 5HHZA 1E8GA 2PLSA 2VFUA 5FXDA 3EUB3 1W1LA 2VFVA 5I1WA 3SR6B 4ML8A 2VFSA 1AHVA 2Y3RA 3I99A 4JAYA 4PVJA 1F0XA 1VDVA 2R2ZA 2R8DA 3D2JA 4BCAA 3FW8A 2GQTA 1JROA 5G5GB 3S1EA 3RJ8A 2PLIA 1MBTA 1N5WC 4ZOHB 4OALA 4PWBA 3NVYB 1QLUA 4BC7A 2P13A 3AM9A 1E8FA 5FXPA 1MBBA 4MLAA 2Q4WA 3S1DA 3S1CA 4PZFA 3NRZB 1DZNA 1SB3B 5AE3A 3TX1A 5FXFA 2W55A 5L6GA 3JS8A 5AE1A 2O3GA 1ZR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVK A;  3NVV B;  3AN1 A;  2YVS A;  3FW7 A;  2Q85 A;  1RM6 B;  1W1M A;  1WYG A;  2GQU A;  2OAI A;  3NS1 B;  3BW7 A;  2W54 A;  3FWA A;  1N62 C;  1W1S A;  3NVW B;  4PYT A;  5FXE A;  2I0K A;  3W8X A;  2QPM A;  1DIQ A;  3D2H A;  2BVF A;  1I19 A;  3LLB A;  1FFU C;  5HQX A;  5AE2 A;  1HSK A;  5HMR A;  5ADZ A;  1FO4 A;  1W1O A;  3DED A;  2VAO A;  3NVZ B;  1N61 C;  4PVH A;  4PVE A;  1N60 C;  2P3H A;  1AHU A;  3B9J B;  3LAE A;  1E0Y A;  4XLO A;  3ETR B;  2BVG A;  3AMZ A;  1N63 C;  3TSJ A;  1QLT A;  4HG0 A;  1N5X A;  1W1J A;  3D2D A;  1FFV C;  2BVH A;  2MBR A;  1WVE A;  3FW9 A;  1AHZ A;  1UXY A;  2EXR A;  4O95 A;  4BC9 A;  2VFR A;  2VFT A;  3PM9 A;  1DII A;  4BBY A;  4UD8 A;  5D79 A;  2W3S A;  4DNS A;  3GSY A;  1JRP A;  2AXR A;  3DQ0 A;  3C0P A;  3KJM A;  1V97 A;  2QKN A;  4EC3 A;  2E3T A;  3W8W A;  1E8H A;  1ZXI C;  3VTE A;  3HRD C;  4PWC A;  2W3R A;  1W1K A;  2NQW A;  1W1Q A;  1T3Q C;  1VAO A;  1WVF A;  4JB1 A;  2P4P A;  3TSH A;  1FIQ B;  1W1R A;  3S1F A;  2RK5 A;  3W8Z A;  5G5H B;  5HHZ A;  1E8G A;  2PLS A;  2VFU A;  5FXD A;  3EUB 3;  1W1L A;  2VFV A;  3SR6 B;  4ML8 A;  2VFS A;  1AHV A;  3I99 A;  4JAY A;  4PVJ A;  1F0X A;  1VDV A;  2R2Z A;  2R8D A;  3D2J A;  4BCA A;  3FW8 A;  2GQT A;  1JRO A;  5G5G B;  3S1E A;  2PLI A;  1MBT A;  1N5W C;  4ZOH B;  4OAL A;  4PWB A;  3NVY B;  1QLU A;  4BC7 A;  2P13 A;  3AM9 A;  1E8F A;  5FXP A;  1MBB A;  4MLA A;  2Q4W A;  3S1D A;  3S1C A;  4PZF A;  3NRZ B;  1DZN A;  1SB3 B;  5AE3 A;  3TX1 A;  5FXF A;  2W55 A;  3JS8 A;  5AE1 A;  2O3G A;  1ZR6 A; 
#chains in the Genus database with same CATH topology
 3NVV B;  4PVK A;  3AN1 A;  2YVS A;  3FW7 A;  2Q85 A;  1RM6 B;  3POP A;  1W1M A;  1WYG A;  2GQU A;  2OAI A;  5AWV A;  3NS1 B;  3BW7 A;  2W54 A;  3FWA A;  1N62 C;  1W1S A;  3NVW B;  4PYT A;  5FXE A;  2I0K A;  3W8X A;  2QPM A;  3EJB B;  1DIQ A;  3D2H A;  2BVF A;  1I19 A;  3LLB A;  1FFU C;  5HQX A;  5K8E A;  5AE2 A;  1HSK A;  5HMR A;  5ADZ A;  1FO4 A;  1W1O A;  3DED A;  5L6F A;  2VAO A;  2Y3S A;  3NVZ B;  2UUV A;  1N61 C;  4PVH A;  4PVE A;  1N60 C;  2P3H A;  1AHU A;  3B9J B;  3LAE A;  1E0Y A;  4XLO A;  3ETR B;  2BVG A;  3AMZ A;  2UUU A;  1N63 C;  3TSJ A;  1QLT A;  4HG0 A;  1N5X A;  1W1J A;  3D2D A;  1FFV C;  2BVH A;  2MBR A;  1WVE A;  3FW9 A;  3EJD B;  1AHZ A;  1UXY A;  2EXR A;  4O95 A;  4BC9 A;  2VFR A;  2VFT A;  3PM9 A;  1DII A;  3PQB A;  4BBY A;  4UD8 A;  5D79 A;  3RJA A;  2W3S A;  4DNS A;  3GSY A;  1JRP A;  2WDW A;  5I1V A;  2AXR A;  3DQ0 A;  3C0P A;  3KJM A;  1V97 A;  2Y08 A;  2QKN A;  4EC3 A;  2E3T A;  3W8W A;  1E8H A;  1ZXI C;  3VTE A;  2IPI A;  3HRD C;  4PWC A;  2W3R A;  1W1K A;  2NQW A;  1W1Q A;  1T3Q C;  2Y4G A;  1VAO A;  1WVF A;  4JB1 A;  3EJE B;  2P4P A;  3TSH A;  1FIQ B;  1W1R A;  3HSU A;  3S1F A;  2RK5 A;  3W8Z A;  5G5H B;  5HHZ A;  1E8G A;  2PLS A;  2VFU A;  5FXD A;  3EUB 3;  1W1L A;  2VFV A;  5I1W A;  3SR6 B;  4ML8 A;  2VFS A;  1AHV A;  2Y3R A;  3I99 A;  4JAY A;  4PVJ A;  1F0X A;  1VDV A;  2R2Z A;  2R8D A;  3D2J A;  4BCA A;  3FW8 A;  2GQT A;  1JRO A;  5G5G B;  3S1E A;  3RJ8 A;  2PLI A;  1MBT A;  1N5W C;  4ZOH B;  4OAL A;  4PWB A;  3NVY B;  1QLU A;  4BC7 A;  2P13 A;  3AM9 A;  1E8F A;  5FXP A;  1MBB A;  4MLA A;  2Q4W A;  3S1D A;  3S1C A;  4PZF A;  3NRZ B;  1DZN A;  1SB3 B;  5AE3 A;  3TX1 A;  5FXF A;  2W55 A;  5L6G A;  3JS8 A;  5AE1 A;  2O3G A;  1ZR6 A; 
#chains in the Genus database with same CATH homology
 4PVK A;  3NVV B;  3AN1 A;  2YVS A;  3FW7 A;  2Q85 A;  1RM6 B;  3POP A;  1W1M A;  1WYG A;  2GQU A;  2OAI A;  5AWV A;  3NS1 B;  3BW7 A;  2W54 A;  3FWA A;  1N62 C;  1W1S A;  3NVW B;  4PYT A;  5FXE A;  2I0K A;  3W8X A;  2QPM A;  1DIQ A;  3D2H A;  2BVF A;  1I19 A;  3LLB A;  1FFU C;  5HQX A;  5K8E A;  5AE2 A;  1HSK A;  5HMR A;  5ADZ A;  1FO4 A;  1W1O A;  3DED A;  5L6F A;  2VAO A;  2Y3S A;  3NVZ B;  2UUV A;  1N61 C;  4PVH A;  4PVE A;  1N60 C;  2P3H A;  1AHU A;  3B9J B;  3LAE A;  1E0Y A;  4XLO A;  3ETR B;  2BVG A;  3AMZ A;  2UUU A;  1N63 C;  3TSJ A;  1QLT A;  4HG0 A;  1N5X A;  1W1J A;  3D2D A;  1FFV C;  2BVH A;  2MBR A;  1WVE A;  3FW9 A;  1AHZ A;  1UXY A;  2EXR A;  4O95 A;  4BC9 A;  2VFR A;  2VFT A;  3PM9 A;  1DII A;  3PQB A;  4BBY A;  4UD8 A;  5D79 A;  3RJA A;  2W3S A;  4DNS A;  3GSY A;  1JRP A;  2WDW A;  5I1V A;  2AXR A;  3DQ0 A;  3C0P A;  3KJM A;  1V97 A;  2Y08 A;  2QKN A;  4EC3 A;  2E3T A;  3W8W A;  1E8H A;  1ZXI C;  3VTE A;  2IPI A;  3HRD C;  4PWC A;  2W3R A;  1W1K A;  2NQW A;  1W1Q A;  1T3Q C;  2Y4G A;  1VAO A;  1WVF A;  4JB1 A;  2P4P A;  3TSH A;  1FIQ B;  1W1R A;  3HSU A;  3S1F A;  2RK5 A;  3W8Z A;  5G5H B;  5HHZ A;  1E8G A;  2PLS A;  2VFU A;  5FXD A;  3EUB 3;  1W1L A;  2VFV A;  5I1W A;  3SR6 B;  4ML8 A;  2VFS A;  1AHV A;  2Y3R A;  3I99 A;  4JAY A;  4PVJ A;  1F0X A;  1VDV A;  2R2Z A;  2R8D A;  3D2J A;  4BCA A;  3FW8 A;  2GQT A;  1JRO A;  5G5G B;  3S1E A;  3RJ8 A;  2PLI A;  1MBT A;  1N5W C;  4ZOH B;  4OAL A;  4PWB A;  3NVY B;  1QLU A;  4BC7 A;  2P13 A;  3AM9 A;  1E8F A;  5FXP A;  1MBB A;  4MLA A;  2Q4W A;  3S1D A;  3S1C A;  4PZF A;  3NRZ B;  1DZN A;  1SB3 B;  5AE3 A;  3TX1 A;  5FXF A;  2W55 A;  5L6G A;  3JS8 A;  5AE1 A;  2O3G A;  1ZR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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