5FXDA

Crystal structure of eugenol oxidase in complex with isoeugenol
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
525
structure length
525
Chain Sequence
TRTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEANLPSAVVSPESTEQVQDIVRIANEYGIPLSPVSTGKNNGYGGAAPRLSGSVIVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPDLGWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSDAWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEEDLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPAEAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTHEERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFSPVSAPDGREAMKQFEMVRNRANEYNKDYAAQFIIGLREMHHVCLFIYDTAIPEAREEILQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDALDPNGIIAPGKSGIWSQRFRGQNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords PROBABLE VANILLYL-ALCOHOL OXIDASE
publication title Biocatalytic Properties and Structural Analysis of Eugenol Oxidase from Rhodococcus Jostii Rha1: A Versatile Oxidative Biocatalyst.
pubmed doi rcsb
source organism Rhodococcus jostii rha1
total genus 181
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 5fxdA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5fxdA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5fxdA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5fxdA03
5ADZA 3TX1A 5FXFA 3D2DA 1T3QC 1W1SA 1SB3B 4PWBA 1W1KA 2VFSA 3SR6B 5AE1A 1QLTA 1N62C 1UXYA 3S1DA 1FFVC 1V97A 4PZFA 1N63C 4PVJA 1DZNA 1WVFA 3B9JB 5HHZA 2R2ZA 3NVWB 3FW7A 4MLAA 2EXRA 1VAOA 3BW7A 1W1OA 2NQWA 1W1QA 1ZR6A 1I19A 4XLOA 3LLBA 2O3GA 3AMZA 2VFUA 2MBRA 1FIQB 5D79A 4EC3A 2R8DA 3EUB3 3W8ZA 1RM6B 3HRDC 4ML8A 3VTEA 2VAOA 3TSJA 4BBYA 1N5XA 4BC9A 3S1FA 1DIIA 2QKNA 1VDVA 3GSYA 4JB1A 2PLIA 1WVEA 4PVEA 4UD8A 5AE2A 5G5HB 4O95A 5AE3A 5FXDA 2YVSA 2AXRA 3D2JA 1HSKA 5FXPA 3KJMA 2RK5A 1E8FA 3PM9A 1F0XA 2GQTA 3AN1A 2Q85A 1ZXIC 2P13A 2PLSA 1W1MA 2VFVA 3DEDA 4DNSA 3TSHA 3NRZB 4PYTA 1AHUA 4BCAA 2BVFA 2GQUA 2W3SA 3DQ0A 3NVYB 1N61C 2W54A 3I99A 1E8HA 3FW9A 2P4PA 1W1LA 5FXEA 2P3HA 1E0YA 2VFRA 4HG0A 1E8GA 2W3RA 4BC7A 3S1CA 4PWCA 1N60C 2I0KA 3W8WA 1AHZA 1JRPA 1W1RA 1FFUC 1MBTA 3FWAA 1QLUA 5HQXA 3D2HA 1DIQA 3NVVB 3W8XA 3FW8A 3AM9A 3S1EA 4JAYA 1JROA 1N5WC 5HMRA 1AHVA 2BVGA 1WYGA 2BVHA 3NVZB 5G5GB 4ZOHB 3NS1B 2W55A 3LAEA 3C0PA 2QPMA 3JS8A 4PVKA 2E3TA 4PVHA 1W1JA 1MBBA 2VFTA 1FO4A 2Q4WA 3ETRB 4OALA 2OAIA
chains in the Genus database with same CATH superfamily
5ADZA 3TX1A 5FXFA 3D2DA 1T3QC 1W1SA 1SB3B 4PWBA 2IPIA 1W1KA 2VFSA 3SR6B 5AE1A 1QLTA 1N62C 1UXYA 3S1DA 1FFVC 1V97A 4PZFA 1N63C 4PVJA 1DZNA 1WVFA 3B9JB 5HHZA 3EJBB 2R2ZA 3NVWB 5K8EA 3FW7A 4MLAA 2EXRA 1VAOA 3BW7A 1W1OA 2NQWA 1W1QA 1ZR6A 1I19A 4XLOA 3LLBA 2O3GA 3AMZA 2VFUA 2MBRA 1FIQB 5D79A 4EC3A 2R8DA 3EUB3 3W8ZA 1RM6B 2UUVA 3HRDC 4ML8A 3VTEA 2VAOA 3TSJA 4BBYA 1N5XA 4BC9A 3S1FA 1DIIA 2QKNA 1VDVA 2WDWA 3GSYA 4JB1A 2PLIA 1WVEA 4PVEA 4UD8A 5AE2A 5G5HB 4O95A 5AE3A 5FXDA 2YVSA 2AXRA 3D2JA 2Y08A 1HSKA 5FXPA 2Y4GA 3EJEB 3KJMA 2RK5A 1E8FA 3PM9A 1F0XA 2GQTA 3AN1A 2Q85A 1ZXIC 2P13A 2PLSA 3RJ8A 1W1MA 2VFVA 3DEDA 4DNSA 3TSHA 3NRZB 4PYTA 1AHUA 4BCAA 3POPA 3PQBA 2BVFA 2GQUA 2W3SA 3DQ0A 3NVYB 1N61C 3RJAA 2W54A 5AWVA 3I99A 1E8HA 3FW9A 5I1WA 2P4PA 1W1LA 5FXEA 2P3HA 1E0YA 2VFRA 2UUUA 4HG0A 1E8GA 2W3RA 4BC7A 3S1CA 5L6FA 4PWCA 1N60C 2I0KA 3W8WA 1AHZA 1JRPA 1W1RA 1FFUC 1MBTA 3FWAA 1QLUA 5HQXA 3D2HA 1DIQA 3HSUA 5I1VA 3NVVB 3W8XA 3EJDB 3FW8A 3AM9A 3S1EA 4JAYA 1JROA 1N5WC 5HMRA 1AHVA 2BVGA 2Y3SA 1WYGA 2BVHA 3NVZB 5G5GB 4ZOHB 5L6GA 3NS1B 2W55A 3LAEA 3C0PA 2QPMA 3JS8A 4PVKA 2E3TA 4PVHA 1W1JA 1MBBA 2VFTA 1FO4A 2Q4WA 3ETRB 4OALA 2Y3RA 2OAIA
chains in the Genus database with same CATH topology
5ADZA 3TX1A 5FXFA 3D2DA 1T3QC 1W1SA 1SB3B 4PWBA 2IPIA 1W1KA 2VFSA 3SR6B 5AE1A 1QLTA 1N62C 1UXYA 3S1DA 1FFVC 1V97A 4PZFA 1N63C 4PVJA 1DZNA 1WVFA 3B9JB 5HHZA 2R2ZA 3NVWB 5K8EA 3FW7A 4MLAA 2EXRA 1VAOA 3BW7A 1W1OA 2NQWA 1W1QA 1ZR6A 1I19A 4XLOA 3LLBA 2O3GA 3AMZA 2VFUA 2MBRA 1FIQB 5D79A 4EC3A 2R8DA 3EUB3 3W8ZA 1RM6B 2UUVA 3HRDC 4ML8A 3VTEA 2VAOA 3TSJA 4BBYA 1N5XA 4BC9A 3S1FA 1DIIA 2QKNA 1VDVA 2WDWA 3GSYA 4JB1A 2PLIA 1WVEA 4PVEA 4UD8A 5AE2A 5G5HB 4O95A 5AE3A 5FXDA 2YVSA 2AXRA 3D2JA 2Y08A 1HSKA 5FXPA 2Y4GA 3KJMA 2RK5A 1E8FA 3PM9A 1F0XA 2GQTA 3AN1A 2Q85A 1ZXIC 2P13A 2PLSA 3RJ8A 1W1MA 2VFVA 3DEDA 4DNSA 3TSHA 3NRZB 4PYTA 1AHUA 4BCAA 3POPA 3PQBA 2BVFA 2GQUA 2W3SA 3DQ0A 3NVYB 1N61C 3RJAA 2W54A 5AWVA 3I99A 1E8HA 3FW9A 5I1WA 2P4PA 1W1LA 5FXEA 2P3HA 1E0YA 2VFRA 2UUUA 4HG0A 1E8GA 2W3RA 4BC7A 3S1CA 5L6FA 4PWCA 1N60C 2I0KA 3W8WA 1AHZA 1JRPA 1W1RA 1FFUC 1MBTA 3FWAA 1QLUA 5HQXA 3D2HA 1DIQA 3HSUA 5I1VA 3NVVB 3W8XA 3FW8A 3AM9A 3S1EA 4JAYA 1JROA 1N5WC 5HMRA 1AHVA 2BVGA 2Y3SA 1WYGA 2BVHA 3NVZB 5G5GB 4ZOHB 5L6GA 3NS1B 2W55A 3LAEA 3C0PA 2QPMA 3JS8A 4PVKA 2E3TA 4PVHA 1W1JA 1MBBA 2VFTA 1FO4A 2Q4WA 3ETRB 4OALA 2Y3RA 2OAIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADZ A;  3TX1 A;  5FXF A;  3D2D A;  1T3Q C;  1W1S A;  1SB3 B;  4PWB A;  1W1K A;  2VFS A;  3SR6 B;  5AE1 A;  1QLT A;  1N62 C;  1UXY A;  3S1D A;  1FFV C;  1V97 A;  4PZF A;  1N63 C;  4PVJ A;  1DZN A;  1WVF A;  3B9J B;  5HHZ A;  2R2Z A;  3NVW B;  3FW7 A;  4MLA A;  2EXR A;  1VAO A;  3BW7 A;  1W1O A;  2NQW A;  1W1Q A;  1ZR6 A;  1I19 A;  4XLO A;  3LLB A;  2O3G A;  3AMZ A;  2VFU A;  2MBR A;  1FIQ B;  5D79 A;  4EC3 A;  2R8D A;  3EUB 3;  3W8Z A;  1RM6 B;  3HRD C;  4ML8 A;  3VTE A;  2VAO A;  3TSJ A;  4BBY A;  1N5X A;  4BC9 A;  3S1F A;  1DII A;  2QKN A;  1VDV A;  3GSY A;  4JB1 A;  2PLI A;  1WVE A;  4PVE A;  4UD8 A;  5AE2 A;  5G5H B;  4O95 A;  5AE3 A;  5FXD A;  2YVS A;  2AXR A;  3D2J A;  1HSK A;  5FXP A;  3KJM A;  2RK5 A;  1E8F A;  3PM9 A;  1F0X A;  2GQT A;  3AN1 A;  2Q85 A;  1ZXI C;  2P13 A;  2PLS A;  1W1M A;  2VFV A;  3DED A;  4DNS A;  3TSH A;  3NRZ B;  4PYT A;  1AHU A;  4BCA A;  2BVF A;  2GQU A;  2W3S A;  3DQ0 A;  3NVY B;  1N61 C;  2W54 A;  3I99 A;  1E8H A;  3FW9 A;  2P4P A;  1W1L A;  5FXE A;  2P3H A;  1E0Y A;  2VFR A;  4HG0 A;  1E8G A;  2W3R A;  4BC7 A;  3S1C A;  4PWC A;  1N60 C;  2I0K A;  3W8W A;  1AHZ A;  1JRP A;  1W1R A;  1FFU C;  1MBT A;  3FWA A;  1QLU A;  5HQX A;  3D2H A;  1DIQ A;  3NVV B;  3W8X A;  3FW8 A;  3AM9 A;  3S1E A;  4JAY A;  1JRO A;  1N5W C;  5HMR A;  1AHV A;  2BVG A;  1WYG A;  2BVH A;  3NVZ B;  5G5G B;  4ZOH B;  3NS1 B;  2W55 A;  3LAE A;  3C0P A;  2QPM A;  3JS8 A;  4PVK A;  2E3T A;  4PVH A;  1W1J A;  1MBB A;  2VFT A;  1FO4 A;  2Q4W A;  3ETR B;  4OAL A;  2OAI A; 
#chains in the Genus database with same CATH topology
 5ADZ A;  3TX1 A;  5FXF A;  3D2D A;  1T3Q C;  1W1S A;  1SB3 B;  4PWB A;  2IPI A;  1W1K A;  2VFS A;  3SR6 B;  5AE1 A;  1QLT A;  1N62 C;  1UXY A;  3S1D A;  1FFV C;  1V97 A;  4PZF A;  1N63 C;  4PVJ A;  1DZN A;  1WVF A;  3B9J B;  5HHZ A;  3EJB B;  2R2Z A;  3NVW B;  5K8E A;  3FW7 A;  4MLA A;  2EXR A;  1VAO A;  3BW7 A;  1W1O A;  2NQW A;  1W1Q A;  1ZR6 A;  1I19 A;  4XLO A;  3LLB A;  2O3G A;  3AMZ A;  2VFU A;  2MBR A;  1FIQ B;  5D79 A;  4EC3 A;  2R8D A;  3EUB 3;  3W8Z A;  1RM6 B;  2UUV A;  3HRD C;  4ML8 A;  3VTE A;  2VAO A;  3TSJ A;  4BBY A;  1N5X A;  4BC9 A;  3S1F A;  1DII A;  2QKN A;  1VDV A;  2WDW A;  3GSY A;  4JB1 A;  2PLI A;  1WVE A;  4PVE A;  4UD8 A;  5AE2 A;  5G5H B;  4O95 A;  5AE3 A;  5FXD A;  2YVS A;  2AXR A;  3D2J A;  2Y08 A;  1HSK A;  5FXP A;  2Y4G A;  3EJE B;  3KJM A;  2RK5 A;  1E8F A;  3PM9 A;  1F0X A;  2GQT A;  3AN1 A;  2Q85 A;  1ZXI C;  2P13 A;  2PLS A;  3RJ8 A;  1W1M A;  2VFV A;  3DED A;  4DNS A;  3TSH A;  3NRZ B;  4PYT A;  1AHU A;  4BCA A;  3POP A;  3PQB A;  2BVF A;  2GQU A;  2W3S A;  3DQ0 A;  3NVY B;  1N61 C;  3RJA A;  2W54 A;  5AWV A;  3I99 A;  1E8H A;  3FW9 A;  5I1W A;  2P4P A;  1W1L A;  5FXE A;  2P3H A;  1E0Y A;  2VFR A;  2UUU A;  4HG0 A;  1E8G A;  2W3R A;  4BC7 A;  3S1C A;  5L6F A;  4PWC A;  1N60 C;  2I0K A;  3W8W A;  1AHZ A;  1JRP A;  1W1R A;  1FFU C;  1MBT A;  3FWA A;  1QLU A;  5HQX A;  3D2H A;  1DIQ A;  3HSU A;  5I1V A;  3NVV B;  3W8X A;  3EJD B;  3FW8 A;  3AM9 A;  3S1E A;  4JAY A;  1JRO A;  1N5W C;  5HMR A;  1AHV A;  2BVG A;  2Y3S A;  1WYG A;  2BVH A;  3NVZ B;  5G5G B;  4ZOH B;  5L6G A;  3NS1 B;  2W55 A;  3LAE A;  3C0P A;  2QPM A;  3JS8 A;  4PVK A;  2E3T A;  4PVH A;  1W1J A;  1MBB A;  2VFT A;  1FO4 A;  2Q4W A;  3ETR B;  4OAL A;  2Y3R A;  2OAI A; 
#chains in the Genus database with same CATH homology
 5ADZ A;  3TX1 A;  5FXF A;  3D2D A;  1T3Q C;  1W1S A;  1SB3 B;  4PWB A;  2IPI A;  1W1K A;  2VFS A;  3SR6 B;  5AE1 A;  1QLT A;  1N62 C;  1UXY A;  3S1D A;  1FFV C;  1V97 A;  4PZF A;  1N63 C;  4PVJ A;  1DZN A;  1WVF A;  3B9J B;  5HHZ A;  2R2Z A;  3NVW B;  5K8E A;  3FW7 A;  4MLA A;  2EXR A;  1VAO A;  3BW7 A;  1W1O A;  2NQW A;  1W1Q A;  1ZR6 A;  1I19 A;  4XLO A;  3LLB A;  2O3G A;  3AMZ A;  2VFU A;  2MBR A;  1FIQ B;  5D79 A;  4EC3 A;  2R8D A;  3EUB 3;  3W8Z A;  1RM6 B;  2UUV A;  3HRD C;  4ML8 A;  3VTE A;  2VAO A;  3TSJ A;  4BBY A;  1N5X A;  4BC9 A;  3S1F A;  1DII A;  2QKN A;  1VDV A;  2WDW A;  3GSY A;  4JB1 A;  2PLI A;  1WVE A;  4PVE A;  4UD8 A;  5AE2 A;  5G5H B;  4O95 A;  5AE3 A;  5FXD A;  2YVS A;  2AXR A;  3D2J A;  2Y08 A;  1HSK A;  5FXP A;  2Y4G A;  3KJM A;  2RK5 A;  1E8F A;  3PM9 A;  1F0X A;  2GQT A;  3AN1 A;  2Q85 A;  1ZXI C;  2P13 A;  2PLS A;  3RJ8 A;  1W1M A;  2VFV A;  3DED A;  4DNS A;  3TSH A;  3NRZ B;  4PYT A;  1AHU A;  4BCA A;  3POP A;  3PQB A;  2BVF A;  2GQU A;  2W3S A;  3DQ0 A;  3NVY B;  1N61 C;  3RJA A;  2W54 A;  5AWV A;  3I99 A;  1E8H A;  3FW9 A;  5I1W A;  2P4P A;  1W1L A;  5FXE A;  2P3H A;  1E0Y A;  2VFR A;  2UUU A;  4HG0 A;  1E8G A;  2W3R A;  4BC7 A;  3S1C A;  5L6F A;  4PWC A;  1N60 C;  2I0K A;  3W8W A;  1AHZ A;  1JRP A;  1W1R A;  1FFU C;  1MBT A;  3FWA A;  1QLU A;  5HQX A;  3D2H A;  1DIQ A;  3HSU A;  5I1V A;  3NVV B;  3W8X A;  3FW8 A;  3AM9 A;  3S1E A;  4JAY A;  1JRO A;  1N5W C;  5HMR A;  1AHV A;  2BVG A;  2Y3S A;  1WYG A;  2BVH A;  3NVZ B;  5G5G B;  4ZOH B;  5L6G A;  3NS1 B;  2W55 A;  3LAE A;  3C0P A;  2QPM A;  3JS8 A;  4PVK A;  2E3T A;  4PVH A;  1W1J A;  1MBB A;  2VFT A;  1FO4 A;  2Q4W A;  3ETR B;  4OAL A;  2Y3R A;  2OAI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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