4PWBA

Phl p 4 i153v variant, a glucose oxidase, pressurized with xenon
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Phleum pratense
molecule keywords Pollen allergen Phl p 4.0202
total genus 164
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pwbA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pwbA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pwbA03
4BCAA 5AE2A 5AWVA 3C0PA 1HSKA 1WVEA 1WYGA 1W1SA 2VFSA 3SR6B 3FW9A 2WDWA 3W8ZA 3PQBA 1VAOA 1JROA 2BVGA 4O95A 3KJMA 2W3RA 5L6FA 2QKNA 2MBRA 2VFUA 3PM9A 2Y3SA 3RJAA 4PZFA 3NS1B 1MBBA 1N61C 3D2DA 2VFRA 5I1VA 5FXDA 1W1QA 1DZNA 1WVFA 1FIQB 3D2HA 1V97A 4XLOA 4PVEA 2QPMA 3FW8A 5L6GA 4DNSA 1UXYA 1DIIA 1W1OA 3W8XA 2W55A 1N60C 2Y08A 3W8WA 2VAOA 2W54A 3FWAA 1FFUC 3HSUA 1N5XA 3AMZA 4PWCA 4MLAA 4PVJA 3EUB3 2VFTA 1E0YA 1W1RA 1AHVA 1T3QC 3NVZB 1AHZA 4BC9A 1AHUA 5FXPA 3TSHA 4ML8A 5FXEA 3S1DA 4PVHA 4ZOHB 3TX1A 2E3TA 1ZR6A 1ZXIC 5HMRA 1QLTA 3AM9A 3GSYA 3POPA 3D2JA 3ETRB 4UD8A 2IPIA 2GQTA 1I19A 3JS8A 5AE3A 3B9JB 1E8FA 5FXFA 3VTEA 4EC3A 3FW7A 4OALA 3S1EA 3S1CA 3I99A 1N5WC 3RJ8A 2Y4GA 1FFVC 1VDVA 2EXRA 5I1WA 3BW7A 2BVFA 3TSJA 3S1FA 1F0XA 4JAYA 1DIQA 2Q85A 3NRZB 3AN1A 4PYTA 4PVKA 1FO4A 1E8HA 5AE1A 1MBTA 2W3SA 2Y3RA 2VFVA 2BVHA 5K8EA 1W1JA 4JB1A 1E8GA 4BC7A 1W1KA 1N62C 1QLUA 1W1LA 2I0KA 2Q4WA 2AXRA 5D79A 4BBYA 1W1MA 4PWBA 1N63C 5ADZA 5HQXA 5HHZA 2GQUA 3DQ0A
chains in the Genus database with same CATH superfamily
4BCAA 5AE2A 5AWVA 3C0PA 2P4PA 1HSKA 1WVEA 2P13A 1WYGA 1W1SA 3LLBA 2VFSA 2O3GA 3SR6B 3FW9A 2WDWA 3W8ZA 2PLSA 3PQBA 1VAOA 1JROA 2BVGA 4O95A 3KJMA 2W3RA 5L6FA 2QKNA 2MBRA 2VFUA 3PM9A 2Y3SA 3RJAA 3HRDC 4PZFA 3NS1B 1MBBA 4HG0A 1N61C 3D2DA 2UUUA 2VFRA 5I1VA 5FXDA 1W1QA 3LAEA 1DZNA 1WVFA 1FIQB 3D2HA 1V97A 4XLOA 3DEDA 4PVEA 2QPMA 3FW8A 5L6GA 4DNSA 3EJBB 1UXYA 1DIIA 1W1OA 3W8XA 2W55A 1N60C 2Y08A 2P3HA 3W8WA 2VAOA 2W54A 3FWAA 3NVYB 3NVWB 1FFUC 3HSUA 1N5XA 3AMZA 4PWCA 4MLAA 5G5HB 4PVJA 3EUB3 2VFTA 1E0YA 1W1RA 1AHVA 1T3QC 3NVZB 1AHZA 4BC9A 2PLIA 1AHUA 5FXPA 1JRPA 3TSHA 4ML8A 5FXEA 3S1DA 4PVHA 4ZOHB 3TX1A 2E3TA 1ZR6A 1ZXIC 5HMRA 1QLTA 3AM9A 3GSYA 3POPA 3NVVB 3D2JA 3ETRB 4UD8A 2IPIA 2GQTA 1I19A 3JS8A 5AE3A 3B9JB 1E8FA 5FXFA 3VTEA 4EC3A 3FW7A 4OALA 3S1EA 3S1CA 2OAIA 3I99A 1N5WC 3RJ8A 2Y4GA 1FFVC 1VDVA 2EXRA 5I1WA 3BW7A 2BVFA 3TSJA 2YVSA 3S1FA 1F0XA 4JAYA 1DIQA 2R2ZA 2Q85A 3NRZB 3AN1A 2RK5A 4PYTA 2R8DA 4PVKA 1FO4A 1E8HA 5AE1A 1MBTA 2W3SA 2Y3RA 5G5GB 2VFVA 1RM6B 2BVHA 2UUVA 5K8EA 1W1JA 1SB3B 4JB1A 1E8GA 4BC7A 1W1KA 1N62C 1QLUA 2NQWA 1W1LA 3EJEB 3EJDB 2I0KA 2Q4WA 2AXRA 5D79A 4BBYA 1W1MA 4PWBA 1N63C 5ADZA 5HQXA 5HHZA 2GQUA 3DQ0A
chains in the Genus database with same CATH topology
4BCAA 5AE2A 5AWVA 3C0PA 2P4PA 1HSKA 1WVEA 2P13A 1WYGA 1W1SA 3LLBA 2VFSA 2O3GA 3SR6B 3FW9A 2WDWA 3W8ZA 2PLSA 3PQBA 1VAOA 1JROA 2BVGA 4O95A 3KJMA 2W3RA 5L6FA 2QKNA 2MBRA 2VFUA 3PM9A 2Y3SA 3RJAA 3HRDC 4PZFA 3NS1B 1MBBA 4HG0A 1N61C 3D2DA 2UUUA 2VFRA 5I1VA 5FXDA 1W1QA 3LAEA 1DZNA 1WVFA 1FIQB 3D2HA 1V97A 4XLOA 3DEDA 4PVEA 2QPMA 3FW8A 5L6GA 4DNSA 1UXYA 1DIIA 1W1OA 3W8XA 2W55A 1N60C 2Y08A 2P3HA 3W8WA 2VAOA 2W54A 3FWAA 3NVYB 3NVWB 1FFUC 3HSUA 1N5XA 3AMZA 4PWCA 4MLAA 5G5HB 4PVJA 3EUB3 2VFTA 1E0YA 1W1RA 1AHVA 1T3QC 3NVZB 1AHZA 4BC9A 2PLIA 1AHUA 5FXPA 1JRPA 3TSHA 4ML8A 5FXEA 3S1DA 4PVHA 4ZOHB 3TX1A 2E3TA 1ZR6A 1ZXIC 5HMRA 1QLTA 3AM9A 3GSYA 3POPA 3NVVB 3D2JA 3ETRB 4UD8A 2IPIA 2GQTA 1I19A 3JS8A 5AE3A 3B9JB 1E8FA 5FXFA 3VTEA 4EC3A 3FW7A 4OALA 3S1EA 3S1CA 2OAIA 3I99A 1N5WC 3RJ8A 2Y4GA 1FFVC 1VDVA 2EXRA 5I1WA 3BW7A 2BVFA 3TSJA 2YVSA 3S1FA 1F0XA 4JAYA 1DIQA 2R2ZA 2Q85A 3NRZB 3AN1A 2RK5A 4PYTA 2R8DA 4PVKA 1FO4A 1E8HA 5AE1A 1MBTA 2W3SA 2Y3RA 5G5GB 2VFVA 1RM6B 2BVHA 2UUVA 5K8EA 1W1JA 1SB3B 4JB1A 1E8GA 4BC7A 1W1KA 1N62C 1QLUA 2NQWA 1W1LA 2I0KA 2Q4WA 2AXRA 5D79A 4BBYA 1W1MA 4PWBA 1N63C 5ADZA 5HQXA 5HHZA 2GQUA 3DQ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BCA A;  5AE2 A;  5AWV A;  3C0P A;  1HSK A;  1WVE A;  1WYG A;  1W1S A;  2VFS A;  3SR6 B;  3FW9 A;  2WDW A;  3W8Z A;  3PQB A;  1VAO A;  1JRO A;  2BVG A;  4O95 A;  3KJM A;  2W3R A;  5L6F A;  2QKN A;  2MBR A;  2VFU A;  3PM9 A;  2Y3S A;  3RJA A;  4PZF A;  3NS1 B;  1MBB A;  1N61 C;  3D2D A;  2VFR A;  5I1V A;  5FXD A;  1W1Q A;  1DZN A;  1WVF A;  1FIQ B;  3D2H A;  1V97 A;  4XLO A;  4PVE A;  2QPM A;  3FW8 A;  5L6G A;  4DNS A;  1UXY A;  1DII A;  1W1O A;  3W8X A;  2W55 A;  1N60 C;  2Y08 A;  3W8W A;  2VAO A;  2W54 A;  3FWA A;  1FFU C;  3HSU A;  1N5X A;  3AMZ A;  4PWC A;  4MLA A;  4PVJ A;  3EUB 3;  2VFT A;  1E0Y A;  1W1R A;  1AHV A;  1T3Q C;  3NVZ B;  1AHZ A;  4BC9 A;  1AHU A;  5FXP A;  3TSH A;  4ML8 A;  5FXE A;  3S1D A;  4PVH A;  4ZOH B;  3TX1 A;  2E3T A;  1ZR6 A;  1ZXI C;  5HMR A;  1QLT A;  3AM9 A;  3GSY A;  3POP A;  3D2J A;  3ETR B;  4UD8 A;  2IPI A;  2GQT A;  1I19 A;  3JS8 A;  5AE3 A;  3B9J B;  1E8F A;  5FXF A;  3VTE A;  4EC3 A;  3FW7 A;  4OAL A;  3S1E A;  3S1C A;  3I99 A;  1N5W C;  3RJ8 A;  2Y4G A;  1FFV C;  1VDV A;  2EXR A;  5I1W A;  3BW7 A;  2BVF A;  3TSJ A;  3S1F A;  1F0X A;  4JAY A;  1DIQ A;  2Q85 A;  3NRZ B;  3AN1 A;  4PYT A;  4PVK A;  1FO4 A;  1E8H A;  5AE1 A;  1MBT A;  2W3S A;  2Y3R A;  2VFV A;  2BVH A;  5K8E A;  1W1J A;  4JB1 A;  1E8G A;  4BC7 A;  1W1K A;  1N62 C;  1QLU A;  1W1L A;  2I0K A;  2Q4W A;  2AXR A;  5D79 A;  4BBY A;  1W1M A;  4PWB A;  1N63 C;  5ADZ A;  5HQX A;  5HHZ A;  2GQU A;  3DQ0 A; 
#chains in the Genus database with same CATH topology
 4BCA A;  5AE2 A;  5AWV A;  3C0P A;  2P4P A;  1HSK A;  1WVE A;  2P13 A;  1WYG A;  1W1S A;  3LLB A;  2VFS A;  2O3G A;  3SR6 B;  3FW9 A;  2WDW A;  3W8Z A;  2PLS A;  3PQB A;  1VAO A;  1JRO A;  2BVG A;  4O95 A;  3KJM A;  2W3R A;  5L6F A;  2QKN A;  2MBR A;  2VFU A;  3PM9 A;  2Y3S A;  3RJA A;  3HRD C;  4PZF A;  3NS1 B;  1MBB A;  4HG0 A;  1N61 C;  3D2D A;  2UUU A;  2VFR A;  5I1V A;  5FXD A;  1W1Q A;  3LAE A;  1DZN A;  1WVF A;  1FIQ B;  3D2H A;  1V97 A;  4XLO A;  3DED A;  4PVE A;  2QPM A;  3FW8 A;  5L6G A;  4DNS A;  3EJB B;  1UXY A;  1DII A;  1W1O A;  3W8X A;  2W55 A;  1N60 C;  2Y08 A;  2P3H A;  3W8W A;  2VAO A;  2W54 A;  3FWA A;  3NVY B;  3NVW B;  1FFU C;  3HSU A;  1N5X A;  3AMZ A;  4PWC A;  4MLA A;  5G5H B;  4PVJ A;  3EUB 3;  2VFT A;  1E0Y A;  1W1R A;  1AHV A;  1T3Q C;  3NVZ B;  1AHZ A;  4BC9 A;  2PLI A;  1AHU A;  5FXP A;  1JRP A;  3TSH A;  4ML8 A;  5FXE A;  3S1D A;  4PVH A;  4ZOH B;  3TX1 A;  2E3T A;  1ZR6 A;  1ZXI C;  5HMR A;  1QLT A;  3AM9 A;  3GSY A;  3POP A;  3NVV B;  3D2J A;  3ETR B;  4UD8 A;  2IPI A;  2GQT A;  1I19 A;  3JS8 A;  5AE3 A;  3B9J B;  1E8F A;  5FXF A;  3VTE A;  4EC3 A;  3FW7 A;  4OAL A;  3S1E A;  3S1C A;  2OAI A;  3I99 A;  1N5W C;  3RJ8 A;  2Y4G A;  1FFV C;  1VDV A;  2EXR A;  5I1W A;  3BW7 A;  2BVF A;  3TSJ A;  2YVS A;  3S1F A;  1F0X A;  4JAY A;  1DIQ A;  2R2Z A;  2Q85 A;  3NRZ B;  3AN1 A;  2RK5 A;  4PYT A;  2R8D A;  4PVK A;  1FO4 A;  1E8H A;  5AE1 A;  1MBT A;  2W3S A;  2Y3R A;  5G5G B;  2VFV A;  1RM6 B;  2BVH A;  2UUV A;  5K8E A;  1W1J A;  1SB3 B;  4JB1 A;  1E8G A;  4BC7 A;  1W1K A;  1N62 C;  1QLU A;  2NQW A;  1W1L A;  3EJE B;  3EJD B;  2I0K A;  2Q4W A;  2AXR A;  5D79 A;  4BBY A;  1W1M A;  4PWB A;  1N63 C;  5ADZ A;  5HQX A;  5HHZ A;  2GQU A;  3DQ0 A; 
#chains in the Genus database with same CATH homology
 4BCA A;  5AE2 A;  5AWV A;  3C0P A;  2P4P A;  1HSK A;  1WVE A;  2P13 A;  1WYG A;  1W1S A;  3LLB A;  2VFS A;  2O3G A;  3SR6 B;  3FW9 A;  2WDW A;  3W8Z A;  2PLS A;  3PQB A;  1VAO A;  1JRO A;  2BVG A;  4O95 A;  3KJM A;  2W3R A;  5L6F A;  2QKN A;  2MBR A;  2VFU A;  3PM9 A;  2Y3S A;  3RJA A;  3HRD C;  4PZF A;  3NS1 B;  1MBB A;  4HG0 A;  1N61 C;  3D2D A;  2UUU A;  2VFR A;  5I1V A;  5FXD A;  1W1Q A;  3LAE A;  1DZN A;  1WVF A;  1FIQ B;  3D2H A;  1V97 A;  4XLO A;  3DED A;  4PVE A;  2QPM A;  3FW8 A;  5L6G A;  4DNS A;  1UXY A;  1DII A;  1W1O A;  3W8X A;  2W55 A;  1N60 C;  2Y08 A;  2P3H A;  3W8W A;  2VAO A;  2W54 A;  3FWA A;  3NVY B;  3NVW B;  1FFU C;  3HSU A;  1N5X A;  3AMZ A;  4PWC A;  4MLA A;  5G5H B;  4PVJ A;  3EUB 3;  2VFT A;  1E0Y A;  1W1R A;  1AHV A;  1T3Q C;  3NVZ B;  1AHZ A;  4BC9 A;  2PLI A;  1AHU A;  5FXP A;  1JRP A;  3TSH A;  4ML8 A;  5FXE A;  3S1D A;  4PVH A;  4ZOH B;  3TX1 A;  2E3T A;  1ZR6 A;  1ZXI C;  5HMR A;  1QLT A;  3AM9 A;  3GSY A;  3POP A;  3NVV B;  3D2J A;  3ETR B;  4UD8 A;  2IPI A;  2GQT A;  1I19 A;  3JS8 A;  5AE3 A;  3B9J B;  1E8F A;  5FXF A;  3VTE A;  4EC3 A;  3FW7 A;  4OAL A;  3S1E A;  3S1C A;  2OAI A;  3I99 A;  1N5W C;  3RJ8 A;  2Y4G A;  1FFV C;  1VDV A;  2EXR A;  5I1W A;  3BW7 A;  2BVF A;  3TSJ A;  2YVS A;  3S1F A;  1F0X A;  4JAY A;  1DIQ A;  2R2Z A;  2Q85 A;  3NRZ B;  3AN1 A;  2RK5 A;  4PYT A;  2R8D A;  4PVK A;  1FO4 A;  1E8H A;  5AE1 A;  1MBT A;  2W3S A;  2Y3R A;  5G5G B;  2VFV A;  1RM6 B;  2BVH A;  2UUV A;  5K8E A;  1W1J A;  1SB3 B;  4JB1 A;  1E8G A;  4BC7 A;  1W1K A;  1N62 C;  1QLU A;  2NQW A;  1W1L A;  2I0K A;  2Q4W A;  2AXR A;  5D79 A;  4BBY A;  1W1M A;  4PWB A;  1N63 C;  5ADZ A;  5HQX A;  5HHZ A;  2GQU A;  3DQ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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