4PWBA

Phl p 4 i153v variant, a glucose oxidase, pressurized with xenon
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Pollen allergen Phl p 4.0202
publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
source organism Phleum pratense
total genus 164
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pwbA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pwbA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pwbA03
3D2HA 3FW9A 1ZR6A 2VFTA 1N5WC 2E3TA 3NVZB 2WDWA 3RJAA 3EUB3 2IPIA 1HSKA 2Y3RA 2W54A 4PVHA 4EC3A 3NS1B 5HQXA 1E8FA 3S1DA 3S1CA 2BVHA 2BVFA 3S1FA 3VTEA 1MBTA 2BVGA 3W8ZA 2Y3SA 2Q4WA 2W3RA 5FXFA 3W8XA 5AE3A 3GSYA 4XLOA 1FO4A 2GQUA 3AM9A 5L6FA 5FXPA 2VFRA 1F0XA 3KJMA 3NRZB 1FIQB 2QKNA 3C0PA 2W3SA 3HSUA 5HHZA 3B9JB 2VFUA 3RJ8A 1W1SA 4JB1A 2Q85A 4ML8A 4DNSA 5ADZA 4PVJA 4BCAA 4O95A 3SR6B 2W55A 1WVFA 1QLUA 2QPMA 3ETRB 1VDVA 5K8EA 2EXRA 1MBBA 3D2JA 4ZOHB 4PYTA 3TX1A 4UD8A 4PVKA 3DQ0A 2AXRA 1W1RA 1E8HA 4BBYA 2VFSA 1FFUC 1E0YA 3AMZA 1N63C 4PWBA 2VFVA 2Y4GA 1DZNA 4PVEA 3AN1A 1N62C 5L6GA 3PM9A 1N61C 5D79A 1AHZA 1ZXIC 1N60C 3FW7A 2VAOA 1T3QC 1VAOA 5FXEA 1JROA 5I1VA 2MBRA 3BW7A 1WVEA 3FWAA 3W8WA 2I0KA 3POPA 2Y08A 5FXDA 1AHUA 5AE2A 2GQTA 5I1WA 5AWVA 1N5XA 1V97A 5AE1A 1W1QA 1FFVC 1UXYA 3JS8A 3TSHA 3I99A 4PZFA 5HMRA 1DIQA 1QLTA 1W1KA 4BC7A 1I19A 1AHVA 4BC9A 3S1EA 1W1OA 3FW8A 1WYGA 3D2DA 1W1MA 1DIIA 4JAYA 4MLAA 3TSJA 1E8GA 4PWCA 1W1LA 1W1JA 3PQBA 4OALA
chains in the Genus database with same CATH superfamily
3D2HA 3FW9A 1ZR6A 2VFTA 1N5WC 2E3TA 3NVZB 2WDWA 3RJAA 3EUB3 2IPIA 1HSKA 2Y3RA 2W54A 4PVHA 4EC3A 3NS1B 5HQXA 1E8FA 3S1DA 3S1CA 2BVHA 2BVFA 3EJEB 3S1FA 3VTEA 1MBTA 2BVGA 3W8ZA 2Y3SA 2Q4WA 2W3RA 5FXFA 3W8XA 5AE3A 3GSYA 4XLOA 1FO4A 2GQUA 2P3HA 3AM9A 5L6FA 5FXPA 2VFRA 2R2ZA 2RK5A 3NVVB 3NVWB 1F0XA 3KJMA 2OAIA 3NRZB 1FIQB 2QKNA 1RM6B 3C0PA 3EJDB 2W3SA 3HSUA 5HHZA 3B9JB 2VFUA 3RJ8A 3HRDC 1W1SA 4JB1A 2Q85A 4ML8A 4DNSA 5ADZA 4PVJA 4BCAA 4O95A 3SR6B 3NVYB 2W55A 1WVFA 1QLUA 2QPMA 3ETRB 1VDVA 1SB3B 5K8EA 2EXRA 1MBBA 3D2JA 4ZOHB 4PYTA 3TX1A 4UD8A 4PVKA 3DQ0A 2AXRA 1W1RA 3DEDA 1E8HA 1JRPA 4BBYA 2VFSA 1FFUC 1E0YA 3AMZA 2R8DA 2YVSA 3EJBB 1N63C 4PWBA 2VFVA 2P4PA 2Y4GA 1DZNA 4PVEA 3AN1A 1N62C 5L6GA 3PM9A 1N61C 5D79A 1AHZA 1ZXIC 1N60C 3FW7A 2VAOA 1T3QC 1VAOA 5FXEA 1JROA 5I1VA 2MBRA 3BW7A 1WVEA 3FWAA 3W8WA 2I0KA 3POPA 3LAEA 2Y08A 4HG0A 3LLBA 5FXDA 1AHUA 5AE2A 2GQTA 5I1WA 5AWVA 1N5XA 1V97A 5AE1A 2UUUA 1W1QA 1FFVC 1UXYA 3JS8A 2PLIA 3TSHA 3I99A 4PZFA 5HMRA 2O3GA 1DIQA 1QLTA 2P13A 1W1KA 4BC7A 1I19A 1AHVA 4BC9A 3S1EA 1W1OA 3FW8A 1WYGA 3D2DA 1W1MA 1DIIA 4JAYA 4MLAA 2UUVA 5G5GB 3TSJA 1E8GA 4PWCA 5G5HB 1W1LA 1W1JA 3PQBA 2NQWA 2PLSA 4OALA
chains in the Genus database with same CATH topology
3D2HA 3FW9A 1ZR6A 2VFTA 1N5WC 2E3TA 3NVZB 2WDWA 3RJAA 3EUB3 2IPIA 1HSKA 2Y3RA 2W54A 4PVHA 4EC3A 3NS1B 5HQXA 1E8FA 3S1DA 3S1CA 2BVHA 2BVFA 3S1FA 3VTEA 1MBTA 2BVGA 3W8ZA 2Y3SA 2Q4WA 2W3RA 5FXFA 3W8XA 5AE3A 3GSYA 4XLOA 1FO4A 2GQUA 2P3HA 3AM9A 5L6FA 5FXPA 2VFRA 2R2ZA 2RK5A 3NVVB 3NVWB 1F0XA 3KJMA 2OAIA 3NRZB 1FIQB 2QKNA 1RM6B 3C0PA 2W3SA 3HSUA 5HHZA 3B9JB 2VFUA 3RJ8A 3HRDC 1W1SA 4JB1A 2Q85A 4ML8A 4DNSA 5ADZA 4PVJA 4BCAA 4O95A 3SR6B 3NVYB 2W55A 1WVFA 1QLUA 2QPMA 3ETRB 1VDVA 1SB3B 5K8EA 2EXRA 1MBBA 3D2JA 4ZOHB 4PYTA 3TX1A 4UD8A 4PVKA 3DQ0A 2AXRA 1W1RA 3DEDA 1E8HA 1JRPA 4BBYA 2VFSA 1FFUC 1E0YA 3AMZA 2R8DA 2YVSA 1N63C 4PWBA 2VFVA 2P4PA 2Y4GA 1DZNA 4PVEA 3AN1A 1N62C 5L6GA 3PM9A 1N61C 5D79A 1AHZA 1ZXIC 1N60C 3FW7A 2VAOA 1T3QC 1VAOA 5FXEA 1JROA 5I1VA 2MBRA 3BW7A 1WVEA 3FWAA 3W8WA 2I0KA 3POPA 3LAEA 2Y08A 4HG0A 3LLBA 5FXDA 1AHUA 5AE2A 2GQTA 5I1WA 5AWVA 1N5XA 1V97A 5AE1A 2UUUA 1W1QA 1FFVC 1UXYA 3JS8A 2PLIA 3TSHA 3I99A 4PZFA 5HMRA 2O3GA 1DIQA 1QLTA 2P13A 1W1KA 4BC7A 1I19A 1AHVA 4BC9A 3S1EA 1W1OA 3FW8A 1WYGA 3D2DA 1W1MA 1DIIA 4JAYA 4MLAA 2UUVA 5G5GB 3TSJA 1E8GA 4PWCA 5G5HB 1W1LA 1W1JA 3PQBA 2NQWA 2PLSA 4OALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2H A;  3FW9 A;  1ZR6 A;  2VFT A;  1N5W C;  2E3T A;  3NVZ B;  2WDW A;  3RJA A;  3EUB 3;  2IPI A;  1HSK A;  2Y3R A;  2W54 A;  4PVH A;  4EC3 A;  3NS1 B;  5HQX A;  1E8F A;  3S1D A;  3S1C A;  2BVH A;  2BVF A;  3S1F A;  3VTE A;  1MBT A;  2BVG A;  3W8Z A;  2Y3S A;  2Q4W A;  2W3R A;  5FXF A;  3W8X A;  5AE3 A;  3GSY A;  4XLO A;  1FO4 A;  2GQU A;  3AM9 A;  5L6F A;  5FXP A;  2VFR A;  1F0X A;  3KJM A;  3NRZ B;  1FIQ B;  2QKN A;  3C0P A;  2W3S A;  3HSU A;  5HHZ A;  3B9J B;  2VFU A;  3RJ8 A;  1W1S A;  4JB1 A;  2Q85 A;  4ML8 A;  4DNS A;  5ADZ A;  4PVJ A;  4BCA A;  4O95 A;  3SR6 B;  2W55 A;  1WVF A;  1QLU A;  2QPM A;  3ETR B;  1VDV A;  5K8E A;  2EXR A;  1MBB A;  3D2J A;  4ZOH B;  4PYT A;  3TX1 A;  4UD8 A;  4PVK A;  3DQ0 A;  2AXR A;  1W1R A;  1E8H A;  4BBY A;  2VFS A;  1FFU C;  1E0Y A;  3AMZ A;  1N63 C;  4PWB A;  2VFV A;  2Y4G A;  1DZN A;  4PVE A;  3AN1 A;  1N62 C;  5L6G A;  3PM9 A;  1N61 C;  5D79 A;  1AHZ A;  1ZXI C;  1N60 C;  3FW7 A;  2VAO A;  1T3Q C;  1VAO A;  5FXE A;  1JRO A;  5I1V A;  2MBR A;  3BW7 A;  1WVE A;  3FWA A;  3W8W A;  2I0K A;  3POP A;  2Y08 A;  5FXD A;  1AHU A;  5AE2 A;  2GQT A;  5I1W A;  5AWV A;  1N5X A;  1V97 A;  5AE1 A;  1W1Q A;  1FFV C;  1UXY A;  3JS8 A;  3TSH A;  3I99 A;  4PZF A;  5HMR A;  1DIQ A;  1QLT A;  1W1K A;  4BC7 A;  1I19 A;  1AHV A;  4BC9 A;  3S1E A;  1W1O A;  3FW8 A;  1WYG A;  3D2D A;  1W1M A;  1DII A;  4JAY A;  4MLA A;  3TSJ A;  1E8G A;  4PWC A;  1W1L A;  1W1J A;  3PQB A;  4OAL A; 
#chains in the Genus database with same CATH topology
 3D2H A;  3FW9 A;  1ZR6 A;  2VFT A;  1N5W C;  2E3T A;  3NVZ B;  2WDW A;  3RJA A;  3EUB 3;  2IPI A;  1HSK A;  2Y3R A;  2W54 A;  4PVH A;  4EC3 A;  3NS1 B;  5HQX A;  1E8F A;  3S1D A;  3S1C A;  2BVH A;  2BVF A;  3EJE B;  3S1F A;  3VTE A;  1MBT A;  2BVG A;  3W8Z A;  2Y3S A;  2Q4W A;  2W3R A;  5FXF A;  3W8X A;  5AE3 A;  3GSY A;  4XLO A;  1FO4 A;  2GQU A;  2P3H A;  3AM9 A;  5L6F A;  5FXP A;  2VFR A;  2R2Z A;  2RK5 A;  3NVV B;  3NVW B;  1F0X A;  3KJM A;  2OAI A;  3NRZ B;  1FIQ B;  2QKN A;  1RM6 B;  3C0P A;  3EJD B;  2W3S A;  3HSU A;  5HHZ A;  3B9J B;  2VFU A;  3RJ8 A;  3HRD C;  1W1S A;  4JB1 A;  2Q85 A;  4ML8 A;  4DNS A;  5ADZ A;  4PVJ A;  4BCA A;  4O95 A;  3SR6 B;  3NVY B;  2W55 A;  1WVF A;  1QLU A;  2QPM A;  3ETR B;  1VDV A;  1SB3 B;  5K8E A;  2EXR A;  1MBB A;  3D2J A;  4ZOH B;  4PYT A;  3TX1 A;  4UD8 A;  4PVK A;  3DQ0 A;  2AXR A;  1W1R A;  3DED A;  1E8H A;  1JRP A;  4BBY A;  2VFS A;  1FFU C;  1E0Y A;  3AMZ A;  2R8D A;  2YVS A;  3EJB B;  1N63 C;  4PWB A;  2VFV A;  2P4P A;  2Y4G A;  1DZN A;  4PVE A;  3AN1 A;  1N62 C;  5L6G A;  3PM9 A;  1N61 C;  5D79 A;  1AHZ A;  1ZXI C;  1N60 C;  3FW7 A;  2VAO A;  1T3Q C;  1VAO A;  5FXE A;  1JRO A;  5I1V A;  2MBR A;  3BW7 A;  1WVE A;  3FWA A;  3W8W A;  2I0K A;  3POP A;  3LAE A;  2Y08 A;  4HG0 A;  3LLB A;  5FXD A;  1AHU A;  5AE2 A;  2GQT A;  5I1W A;  5AWV A;  1N5X A;  1V97 A;  5AE1 A;  2UUU A;  1W1Q A;  1FFV C;  1UXY A;  3JS8 A;  2PLI A;  3TSH A;  3I99 A;  4PZF A;  5HMR A;  2O3G A;  1DIQ A;  1QLT A;  2P13 A;  1W1K A;  4BC7 A;  1I19 A;  1AHV A;  4BC9 A;  3S1E A;  1W1O A;  3FW8 A;  1WYG A;  3D2D A;  1W1M A;  1DII A;  4JAY A;  4MLA A;  2UUV A;  5G5G B;  3TSJ A;  1E8G A;  4PWC A;  5G5H B;  1W1L A;  1W1J A;  3PQB A;  2NQW A;  2PLS A;  4OAL A; 
#chains in the Genus database with same CATH homology
 3D2H A;  3FW9 A;  1ZR6 A;  2VFT A;  1N5W C;  2E3T A;  3NVZ B;  2WDW A;  3RJA A;  3EUB 3;  2IPI A;  1HSK A;  2Y3R A;  2W54 A;  4PVH A;  4EC3 A;  3NS1 B;  5HQX A;  1E8F A;  3S1D A;  3S1C A;  2BVH A;  2BVF A;  3S1F A;  3VTE A;  1MBT A;  2BVG A;  3W8Z A;  2Y3S A;  2Q4W A;  2W3R A;  5FXF A;  3W8X A;  5AE3 A;  3GSY A;  4XLO A;  1FO4 A;  2GQU A;  2P3H A;  3AM9 A;  5L6F A;  5FXP A;  2VFR A;  2R2Z A;  2RK5 A;  3NVV B;  3NVW B;  1F0X A;  3KJM A;  2OAI A;  3NRZ B;  1FIQ B;  2QKN A;  1RM6 B;  3C0P A;  2W3S A;  3HSU A;  5HHZ A;  3B9J B;  2VFU A;  3RJ8 A;  3HRD C;  1W1S A;  4JB1 A;  2Q85 A;  4ML8 A;  4DNS A;  5ADZ A;  4PVJ A;  4BCA A;  4O95 A;  3SR6 B;  3NVY B;  2W55 A;  1WVF A;  1QLU A;  2QPM A;  3ETR B;  1VDV A;  1SB3 B;  5K8E A;  2EXR A;  1MBB A;  3D2J A;  4ZOH B;  4PYT A;  3TX1 A;  4UD8 A;  4PVK A;  3DQ0 A;  2AXR A;  1W1R A;  3DED A;  1E8H A;  1JRP A;  4BBY A;  2VFS A;  1FFU C;  1E0Y A;  3AMZ A;  2R8D A;  2YVS A;  1N63 C;  4PWB A;  2VFV A;  2P4P A;  2Y4G A;  1DZN A;  4PVE A;  3AN1 A;  1N62 C;  5L6G A;  3PM9 A;  1N61 C;  5D79 A;  1AHZ A;  1ZXI C;  1N60 C;  3FW7 A;  2VAO A;  1T3Q C;  1VAO A;  5FXE A;  1JRO A;  5I1V A;  2MBR A;  3BW7 A;  1WVE A;  3FWA A;  3W8W A;  2I0K A;  3POP A;  3LAE A;  2Y08 A;  4HG0 A;  3LLB A;  5FXD A;  1AHU A;  5AE2 A;  2GQT A;  5I1W A;  5AWV A;  1N5X A;  1V97 A;  5AE1 A;  2UUU A;  1W1Q A;  1FFV C;  1UXY A;  3JS8 A;  2PLI A;  3TSH A;  3I99 A;  4PZF A;  5HMR A;  2O3G A;  1DIQ A;  1QLT A;  2P13 A;  1W1K A;  4BC7 A;  1I19 A;  1AHV A;  4BC9 A;  3S1E A;  1W1O A;  3FW8 A;  1WYG A;  3D2D A;  1W1M A;  1DII A;  4JAY A;  4MLA A;  2UUV A;  5G5G B;  3TSJ A;  1E8G A;  4PWC A;  5G5H B;  1W1L A;  1W1J A;  3PQB A;  2NQW A;  2PLS A;  4OAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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