2Q85A

Crystal structure of e. coli mur b bound to a naphthyl tetronic acid inihibitor
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
341
structure length
341
Chain Sequence
NHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords UDP-N-acetylenolpyruvoylglucosamine reductase
publication title Crystal Structure of E. Coli Mur B bound to a napthyl tetronic acid inhibitor
rcsb
total genus 101
structure length 341
sequence length 341
ec nomenclature ec 1.3.1.98: UDP-N-acetylmuramate dehydrogenase.
pdb deposition date 2007-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2q85A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2q85A02
3.90.78.10 Alpha Beta Alpha-Beta Complex Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 2q85A03
3TSJA 2NQWA 1AHUA 2O3GA 3PM9A 2I0KA 1FO4A 4BC9A 1JROA 2MBRA 1N62C 1V97A 2VFVA 2GQTA 2R2ZA 2Q4WA 3W8WA 2RK5A 2QKNA 3FW9A 3EUB3 3NS1B 2AXRA 4JAYA 5HQXA 5HHZA 5AE1A 1QLTA 3NVVB 3D2JA 2BVGA 1W1OA 1F0XA 5FXFA 2QPMA 1T3QC 2W55A 4MLAA 3TX1A 2VFTA 4XLOA 4DNSA 1MBTA 3TSHA 1MBBA 4BCAA 4BBYA 4PVJA 5AE2A 4ML8A 4BC7A 3NVWB 3FWAA 2BVHA 1W1RA 3S1FA 1N60C 3W8XA 1JRPA 3S1EA 3W8ZA 2PLSA 1FFVC 1VAOA 1QLUA 2PLIA 3KJMA 4PWCA 1N5XA 1HSKA 2Q85A 4PYTA 2EXRA 2W3SA 2YVSA 3LAEA 3VTEA 3FW7A 1WYGA 1E0YA 1WVFA 3LLBA 4JB1A 1E8HA 1DZNA 5D79A 2W54A 1W1SA 4ZOHB 5FXPA 1AHVA 3D2HA 5G5GB 1E8GA 3JS8A 4UD8A 1ZXIC 3NVYB 1DIQA 2W3RA 3NVZB 3D2DA 5AE3A 4HG0A 2E3TA 5G5HB 2P4PA 3C0PA 3FW8A 4PVKA 5FXEA 1AHZA 4OALA 3S1DA 3DQ0A 3DEDA 3ETRB 1E8FA 1W1MA 5ADZA 2GQUA 4PZFA 1W1LA 1I19A 1W1KA 1W1QA 3S1CA 2BVFA 3B9JB 5HMRA 2P3HA 3AN1A 3BW7A 4PWBA 3HRDC 3SR6B 2VFRA 2R8DA 2VFUA 1W1JA 4PVHA 2P13A 1N63C 3NRZB 1N5WC 4PVEA 2OAIA 1SB3B 1FFUC 1DIIA 1WVEA 5FXDA 4EC3A 1VDVA 1N61C 3AMZA 1FIQB 2VAOA 4O95A 1ZR6A 3I99A 1UXYA 3GSYA 3AM9A 1RM6B 2VFSA
chains in the Genus database with same CATH superfamily
3TSJA 2NQWA 2UUVA 1AHUA 2Y3RA 5I1WA 2O3GA 3PM9A 2I0KA 1FO4A 4BC9A 1JROA 2MBRA 2UUUA 1N62C 1V97A 2VFVA 2GQTA 2R2ZA 3RJ8A 2Q4WA 3W8WA 2RK5A 2QKNA 3FW9A 3EUB3 3NS1B 2AXRA 4JAYA 5HQXA 5HHZA 5AE1A 3EJDB 1QLTA 3NVVB 3D2JA 3HSUA 2BVGA 1W1OA 1F0XA 5FXFA 2QPMA 1T3QC 2W55A 4MLAA 3TX1A 2VFTA 4XLOA 4DNSA 1MBTA 3TSHA 1MBBA 4BCAA 4BBYA 4PVJA 5AE2A 4ML8A 4BC7A 3NVWB 3EJEB 3FWAA 3PQBA 2BVHA 1W1RA 3S1FA 1N60C 3W8XA 1JRPA 3S1EA 3W8ZA 2PLSA 3POPA 1FFVC 1VAOA 1QLUA 2PLIA 3KJMA 4PWCA 1N5XA 1HSKA 2Q85A 4PYTA 2EXRA 2W3SA 2YVSA 2IPIA 3VTEA 3LAEA 3FW7A 1WYGA 1E0YA 1WVFA 3LLBA 4JB1A 5AWVA 1E8HA 1DZNA 5D79A 2W54A 1W1SA 4ZOHB 5FXPA 1AHVA 5L6FA 3D2HA 5G5GB 3EJBB 1E8GA 3JS8A 4UD8A 1ZXIC 3NVYB 5L6GA 1DIQA 2W3RA 3NVZB 3D2DA 5AE3A 4HG0A 2E3TA 5G5HB 2P4PA 3C0PA 3FW8A 2Y08A 4PVKA 5FXEA 1AHZA 4OALA 3S1DA 3DQ0A 3DEDA 3ETRB 1E8FA 1W1MA 5ADZA 2GQUA 4PZFA 1W1LA 1I19A 1W1KA 1W1QA 3S1CA 2BVFA 3B9JB 5K8EA 5HMRA 2P3HA 3AN1A 3BW7A 4PWBA 3HRDC 3SR6B 2VFRA 2R8DA 2VFUA 1W1JA 4PVHA 2P13A 1N63C 2WDWA 3NRZB 1N5WC 4PVEA 2OAIA 1SB3B 1FFUC 1DIIA 1WVEA 5FXDA 4EC3A 1VDVA 1N61C 3AMZA 1FIQB 5I1VA 2VAOA 4O95A 2Y3SA 1ZR6A 3I99A 1UXYA 2Y4GA 3GSYA 3AM9A 1RM6B 3RJAA 2VFSA
chains in the Genus database with same CATH topology
3TSJA 2NQWA 2UUVA 1AHUA 2Y3RA 5I1WA 2O3GA 3PM9A 2I0KA 1FO4A 4BC9A 1JROA 2MBRA 2UUUA 1N62C 1V97A 2VFVA 2GQTA 2R2ZA 3RJ8A 2Q4WA 3W8WA 2RK5A 2QKNA 3FW9A 3EUB3 3NS1B 2AXRA 4JAYA 5HQXA 5HHZA 5AE1A 1QLTA 3NVVB 3D2JA 3HSUA 2BVGA 1W1OA 1F0XA 5FXFA 2QPMA 1T3QC 2W55A 4MLAA 3TX1A 2VFTA 4XLOA 4DNSA 1MBTA 3TSHA 1MBBA 4BCAA 4BBYA 4PVJA 5AE2A 4ML8A 4BC7A 3NVWB 3FWAA 3PQBA 2BVHA 1W1RA 3S1FA 1N60C 3W8XA 1JRPA 3S1EA 3W8ZA 2PLSA 3POPA 1FFVC 1VAOA 1QLUA 2PLIA 3KJMA 4PWCA 1N5XA 1HSKA 2Q85A 4PYTA 2EXRA 2W3SA 2YVSA 2IPIA 3VTEA 3LAEA 3FW7A 1WYGA 1E0YA 1WVFA 3LLBA 4JB1A 5AWVA 1E8HA 1DZNA 5D79A 2W54A 1W1SA 4ZOHB 5FXPA 1AHVA 5L6FA 3D2HA 5G5GB 1E8GA 3JS8A 4UD8A 1ZXIC 3NVYB 5L6GA 1DIQA 2W3RA 3NVZB 3D2DA 5AE3A 4HG0A 2E3TA 5G5HB 2P4PA 3C0PA 3FW8A 2Y08A 4PVKA 5FXEA 1AHZA 4OALA 3S1DA 3DQ0A 3DEDA 3ETRB 1E8FA 1W1MA 5ADZA 2GQUA 4PZFA 1W1LA 1I19A 1W1KA 1W1QA 3S1CA 2BVFA 3B9JB 5K8EA 5HMRA 2P3HA 3AN1A 3BW7A 4PWBA 3HRDC 3SR6B 2VFRA 2R8DA 2VFUA 1W1JA 4PVHA 2P13A 1N63C 2WDWA 3NRZB 1N5WC 4PVEA 2OAIA 1SB3B 1FFUC 1DIIA 1WVEA 5FXDA 4EC3A 1VDVA 1N61C 3AMZA 1FIQB 5I1VA 2VAOA 4O95A 2Y3SA 1ZR6A 3I99A 1UXYA 2Y4GA 3GSYA 3AM9A 1RM6B 3RJAA 2VFSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TSJ A;  2NQW A;  1AHU A;  2O3G A;  3PM9 A;  2I0K A;  1FO4 A;  4BC9 A;  1JRO A;  2MBR A;  1N62 C;  1V97 A;  2VFV A;  2GQT A;  2R2Z A;  2Q4W A;  3W8W A;  2RK5 A;  2QKN A;  3FW9 A;  3EUB 3;  3NS1 B;  2AXR A;  4JAY A;  5HQX A;  5HHZ A;  5AE1 A;  1QLT A;  3NVV B;  3D2J A;  2BVG A;  1W1O A;  1F0X A;  5FXF A;  2QPM A;  1T3Q C;  2W55 A;  4MLA A;  3TX1 A;  2VFT A;  4XLO A;  4DNS A;  1MBT A;  3TSH A;  1MBB A;  4BCA A;  4BBY A;  4PVJ A;  5AE2 A;  4ML8 A;  4BC7 A;  3NVW B;  3FWA A;  2BVH A;  1W1R A;  3S1F A;  1N60 C;  3W8X A;  1JRP A;  3S1E A;  3W8Z A;  2PLS A;  1FFV C;  1VAO A;  1QLU A;  2PLI A;  3KJM A;  4PWC A;  1N5X A;  1HSK A;  2Q85 A;  4PYT A;  2EXR A;  2W3S A;  2YVS A;  3LAE A;  3VTE A;  3FW7 A;  1WYG A;  1E0Y A;  1WVF A;  3LLB A;  4JB1 A;  1E8H A;  1DZN A;  5D79 A;  2W54 A;  1W1S A;  4ZOH B;  5FXP A;  1AHV A;  3D2H A;  5G5G B;  1E8G A;  3JS8 A;  4UD8 A;  1ZXI C;  3NVY B;  1DIQ A;  2W3R A;  3NVZ B;  3D2D A;  5AE3 A;  4HG0 A;  2E3T A;  5G5H B;  2P4P A;  3C0P A;  3FW8 A;  4PVK A;  5FXE A;  1AHZ A;  4OAL A;  3S1D A;  3DQ0 A;  3DED A;  3ETR B;  1E8F A;  1W1M A;  5ADZ A;  2GQU A;  4PZF A;  1W1L A;  1I19 A;  1W1K A;  1W1Q A;  3S1C A;  2BVF A;  3B9J B;  5HMR A;  2P3H A;  3AN1 A;  3BW7 A;  4PWB A;  3HRD C;  3SR6 B;  2VFR A;  2R8D A;  2VFU A;  1W1J A;  4PVH A;  2P13 A;  1N63 C;  3NRZ B;  1N5W C;  4PVE A;  2OAI A;  1SB3 B;  1FFU C;  1DII A;  1WVE A;  5FXD A;  4EC3 A;  1VDV A;  1N61 C;  3AMZ A;  1FIQ B;  2VAO A;  4O95 A;  1ZR6 A;  3I99 A;  1UXY A;  3GSY A;  3AM9 A;  1RM6 B;  2VFS A; 
#chains in the Genus database with same CATH topology
 3TSJ A;  2NQW A;  2UUV A;  1AHU A;  2Y3R A;  5I1W A;  2O3G A;  3PM9 A;  2I0K A;  1FO4 A;  4BC9 A;  1JRO A;  2MBR A;  2UUU A;  1N62 C;  1V97 A;  2VFV A;  2GQT A;  2R2Z A;  3RJ8 A;  2Q4W A;  3W8W A;  2RK5 A;  2QKN A;  3FW9 A;  3EUB 3;  3NS1 B;  2AXR A;  4JAY A;  5HQX A;  5HHZ A;  5AE1 A;  3EJD B;  1QLT A;  3NVV B;  3D2J A;  3HSU A;  2BVG A;  1W1O A;  1F0X A;  5FXF A;  2QPM A;  1T3Q C;  2W55 A;  4MLA A;  3TX1 A;  2VFT A;  4XLO A;  4DNS A;  1MBT A;  3TSH A;  1MBB A;  4BCA A;  4BBY A;  4PVJ A;  5AE2 A;  4ML8 A;  4BC7 A;  3NVW B;  3EJE B;  3FWA A;  3PQB A;  2BVH A;  1W1R A;  3S1F A;  1N60 C;  3W8X A;  1JRP A;  3S1E A;  3W8Z A;  2PLS A;  3POP A;  1FFV C;  1VAO A;  1QLU A;  2PLI A;  3KJM A;  4PWC A;  1N5X A;  1HSK A;  2Q85 A;  4PYT A;  2EXR A;  2W3S A;  2YVS A;  2IPI A;  3VTE A;  3LAE A;  3FW7 A;  1WYG A;  1E0Y A;  1WVF A;  3LLB A;  4JB1 A;  5AWV A;  1E8H A;  1DZN A;  5D79 A;  2W54 A;  1W1S A;  4ZOH B;  5FXP A;  1AHV A;  5L6F A;  3D2H A;  5G5G B;  3EJB B;  1E8G A;  3JS8 A;  4UD8 A;  1ZXI C;  3NVY B;  5L6G A;  1DIQ A;  2W3R A;  3NVZ B;  3D2D A;  5AE3 A;  4HG0 A;  2E3T A;  5G5H B;  2P4P A;  3C0P A;  3FW8 A;  2Y08 A;  4PVK A;  5FXE A;  1AHZ A;  4OAL A;  3S1D A;  3DQ0 A;  3DED A;  3ETR B;  1E8F A;  1W1M A;  5ADZ A;  2GQU A;  4PZF A;  1W1L A;  1I19 A;  1W1K A;  1W1Q A;  3S1C A;  2BVF A;  3B9J B;  5K8E A;  5HMR A;  2P3H A;  3AN1 A;  3BW7 A;  4PWB A;  3HRD C;  3SR6 B;  2VFR A;  2R8D A;  2VFU A;  1W1J A;  4PVH A;  2P13 A;  1N63 C;  2WDW A;  3NRZ B;  1N5W C;  4PVE A;  2OAI A;  1SB3 B;  1FFU C;  1DII A;  1WVE A;  5FXD A;  4EC3 A;  1VDV A;  1N61 C;  3AMZ A;  1FIQ B;  5I1V A;  2VAO A;  4O95 A;  2Y3S A;  1ZR6 A;  3I99 A;  1UXY A;  2Y4G A;  3GSY A;  3AM9 A;  1RM6 B;  3RJA A;  2VFS A; 
#chains in the Genus database with same CATH homology
 3TSJ A;  2NQW A;  2UUV A;  1AHU A;  2Y3R A;  5I1W A;  2O3G A;  3PM9 A;  2I0K A;  1FO4 A;  4BC9 A;  1JRO A;  2MBR A;  2UUU A;  1N62 C;  1V97 A;  2VFV A;  2GQT A;  2R2Z A;  3RJ8 A;  2Q4W A;  3W8W A;  2RK5 A;  2QKN A;  3FW9 A;  3EUB 3;  3NS1 B;  2AXR A;  4JAY A;  5HQX A;  5HHZ A;  5AE1 A;  1QLT A;  3NVV B;  3D2J A;  3HSU A;  2BVG A;  1W1O A;  1F0X A;  5FXF A;  2QPM A;  1T3Q C;  2W55 A;  4MLA A;  3TX1 A;  2VFT A;  4XLO A;  4DNS A;  1MBT A;  3TSH A;  1MBB A;  4BCA A;  4BBY A;  4PVJ A;  5AE2 A;  4ML8 A;  4BC7 A;  3NVW B;  3FWA A;  3PQB A;  2BVH A;  1W1R A;  3S1F A;  1N60 C;  3W8X A;  1JRP A;  3S1E A;  3W8Z A;  2PLS A;  3POP A;  1FFV C;  1VAO A;  1QLU A;  2PLI A;  3KJM A;  4PWC A;  1N5X A;  1HSK A;  2Q85 A;  4PYT A;  2EXR A;  2W3S A;  2YVS A;  2IPI A;  3VTE A;  3LAE A;  3FW7 A;  1WYG A;  1E0Y A;  1WVF A;  3LLB A;  4JB1 A;  5AWV A;  1E8H A;  1DZN A;  5D79 A;  2W54 A;  1W1S A;  4ZOH B;  5FXP A;  1AHV A;  5L6F A;  3D2H A;  5G5G B;  1E8G A;  3JS8 A;  4UD8 A;  1ZXI C;  3NVY B;  5L6G A;  1DIQ A;  2W3R A;  3NVZ B;  3D2D A;  5AE3 A;  4HG0 A;  2E3T A;  5G5H B;  2P4P A;  3C0P A;  3FW8 A;  2Y08 A;  4PVK A;  5FXE A;  1AHZ A;  4OAL A;  3S1D A;  3DQ0 A;  3DED A;  3ETR B;  1E8F A;  1W1M A;  5ADZ A;  2GQU A;  4PZF A;  1W1L A;  1I19 A;  1W1K A;  1W1Q A;  3S1C A;  2BVF A;  3B9J B;  5K8E A;  5HMR A;  2P3H A;  3AN1 A;  3BW7 A;  4PWB A;  3HRD C;  3SR6 B;  2VFR A;  2R8D A;  2VFU A;  1W1J A;  4PVH A;  2P13 A;  1N63 C;  2WDW A;  3NRZ B;  1N5W C;  4PVE A;  2OAI A;  1SB3 B;  1FFU C;  1DII A;  1WVE A;  5FXD A;  4EC3 A;  1VDV A;  1N61 C;  3AMZ A;  1FIQ B;  5I1V A;  2VAO A;  4O95 A;  2Y3S A;  1ZR6 A;  3I99 A;  1UXY A;  2Y4G A;  3GSY A;  3AM9 A;  1RM6 B;  3RJA A;  2VFS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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