5D79A

Structure of bbe-like #28 from arabidopsis thaliana
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
503
structure length
498
Chain Sequence
HEDFLKCLSYTVEPKVIHTSKDSSFFSILDSSIQNPRFSVSETPKPVSIITPVKASDVQTVIRCAQLHGIHVRTRSAGHCYEGLSYIAYNKPFAVIDLRNLRSISLDVDNRTGWVQTGATAGELYYEIGKTTKSLAFPAGIHPTVGVGGQFSGGGYGTLLRKYGLAADNIIDALVVDASGRILDRQAMGEDYFWAIRGGGGSSFGVILSWKVKLVDVPSTITVFKVQKTSKKEAVRIIKKWQYAADKVPDDLFIRTTLERSNKNAVHALFTGLYIGPVNNLLALMEEKFPELGLEKEGCEEMSWIESVLWFADFPKGESLGVLTNRERTSLSFKGKDDFVQEPIPEAAIQEIWRRLEAPEARLGKIILTPFGGKMSEMAEYETPFPHRGGNLYEIQYVAYWREEEDKNKTETDKYLKWVDSVYEFMTPYVSKSPRGAYVNFKDMDLGMYLGKKKTKYEEGKSWGVKYFKNNFERLVRVKTRVDPTDFFCDEQSIPLVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Berberine bridge enzyme-like protein
publication title Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 167
structure length 498
sequence length 503
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5d79A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5d79A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5d79A03
3S1EA 1JROA 1I19A 5FXFA 4ML8A 1N61C 2AXRA 5D79A 1MBBA 3NS1B 1FO4A 3EUB3 1AHZA 3FW9A 4PZFA 4PVJA 3AM9A 4UD8A 1VDVA 2W54A 3DQ0A 1FIQB 3FW8A 4ZOHB 3W8XA 2Y3RA 5FXDA 1E8FA 3SR6B 3RJ8A 3S1CA 1N62C 2E3TA 2VFVA 5AWVA 2W55A 5AE2A 3AN1A 1W1OA 3W8WA 1T3QC 5AE3A 4PWBA 4XLOA 4BC9A 3PM9A 1W1LA 1W1QA 1ZXIC 3D2DA 3GSYA 2Y3SA 5AE1A 4EC3A 3B9JB 4PVKA 1FFUC 1DZNA 1HSKA 1VAOA 1W1RA 2W3SA 3TSHA 2WDWA 3BW7A 1ZR6A 3VTEA 5HQXA 2I0KA 4O95A 5L6GA 1FFVC 3AMZA 5I1VA 4JAYA 2VAOA 2VFRA 2W3RA 3NVZB 2Y08A 4PVHA 4PYTA 2Y4GA 5I1WA 3FWAA 4BC7A 1QLTA 3D2HA 4BCAA 1W1JA 1E8GA 2GQUA 3RJAA 2BVGA 3D2JA 1WYGA 4MLAA 1WVEA 1E0YA 4DNSA 1UXYA 1F0XA 3S1DA 2EXRA 3FW7A 2QKNA 4PVEA 3POPA 2IPIA 3S1FA 4PWCA 2VFTA 1N5XA 4JB1A 1MBTA 2VFUA 3W8ZA 5FXPA 1W1MA 1WVFA 3I99A 2QPMA 3HSUA 3C0PA 2VFSA 3NRZB 3TSJA 2BVHA 2Q4WA 1N5WC 1V97A 1N63C 5L6FA 2MBRA 5FXEA 3TX1A 5K8EA 1E8HA 1W1SA 1AHVA 4BBYA 3KJMA 1QLUA 1DIQA 3ETRB 3JS8A 4OALA 2Q85A 5HHZA 1AHUA 2GQTA 1N60C 1W1KA 1DIIA 5ADZA 5HMRA 3PQBA 2BVFA
chains in the Genus database with same CATH superfamily
3S1EA 1JROA 1I19A 5FXFA 4ML8A 3EJEB 1N61C 2AXRA 5D79A 1MBBA 3NS1B 1FO4A 3EUB3 2YVSA 2NQWA 1AHZA 3FW9A 2UUVA 4PZFA 4PVJA 3AM9A 4UD8A 1VDVA 2W54A 3DQ0A 1FIQB 3FW8A 4ZOHB 3W8XA 2Y3RA 5FXDA 1E8FA 3SR6B 3RJ8A 3S1CA 1N62C 2E3TA 2VFVA 1JRPA 5AWVA 2W55A 5AE2A 3AN1A 1W1OA 3W8WA 1T3QC 5AE3A 4PWBA 4XLOA 4BC9A 3PM9A 5G5GB 1W1LA 1W1QA 3NVWB 1ZXIC 3D2DA 3GSYA 2Y3SA 5AE1A 4EC3A 3LAEA 3B9JB 4PVKA 1FFUC 1DZNA 1HSKA 1VAOA 1W1RA 2W3SA 3EJBB 3TSHA 3NVVB 2P4PA 2R2ZA 2WDWA 3BW7A 1ZR6A 3VTEA 5HQXA 2I0KA 4O95A 5L6GA 1FFVC 3AMZA 5I1VA 4JAYA 2VAOA 2VFRA 2W3RA 3NVZB 2Y08A 4PVHA 4PYTA 2Y4GA 5I1WA 3FWAA 4BC7A 3NVYB 1QLTA 3D2HA 4BCAA 1W1JA 1E8GA 2GQUA 3RJAA 2BVGA 2O3GA 3D2JA 1WYGA 4MLAA 1WVEA 5G5HB 1E0YA 3EJDB 4DNSA 1UXYA 1F0XA 3LLBA 3S1DA 2EXRA 3FW7A 4HG0A 2QKNA 2PLIA 4PVEA 3POPA 2R8DA 2IPIA 2P3HA 3S1FA 4PWCA 2VFTA 2UUUA 1N5XA 4JB1A 1MBTA 2VFUA 3W8ZA 2PLSA 5FXPA 1W1MA 1WVFA 3I99A 2QPMA 3HSUA 3C0PA 2RK5A 2VFSA 3NRZB 3TSJA 2BVHA 2Q4WA 1N5WC 1V97A 1N63C 5L6FA 2MBRA 5FXEA 3DEDA 3TX1A 1SB3B 5K8EA 1E8HA 1RM6B 1W1SA 1AHVA 4BBYA 3KJMA 1QLUA 1DIQA 2P13A 3HRDC 3ETRB 3JS8A 4OALA 2Q85A 5HHZA 1AHUA 2GQTA 1N60C 1W1KA 1DIIA 5ADZA 5HMRA 3PQBA 2OAIA 2BVFA
chains in the Genus database with same CATH topology
3S1EA 1JROA 1I19A 5FXFA 4ML8A 1N61C 2AXRA 5D79A 1MBBA 3NS1B 1FO4A 3EUB3 2YVSA 2NQWA 1AHZA 3FW9A 2UUVA 4PZFA 4PVJA 3AM9A 4UD8A 1VDVA 2W54A 3DQ0A 1FIQB 3FW8A 4ZOHB 3W8XA 2Y3RA 5FXDA 1E8FA 3SR6B 3RJ8A 3S1CA 1N62C 2E3TA 2VFVA 1JRPA 5AWVA 2W55A 5AE2A 3AN1A 1W1OA 3W8WA 1T3QC 5AE3A 4PWBA 4XLOA 4BC9A 3PM9A 5G5GB 1W1LA 1W1QA 3NVWB 1ZXIC 3D2DA 3GSYA 2Y3SA 5AE1A 4EC3A 3LAEA 3B9JB 4PVKA 1FFUC 1DZNA 1HSKA 1VAOA 1W1RA 2W3SA 3TSHA 3NVVB 2P4PA 2R2ZA 2WDWA 3BW7A 1ZR6A 3VTEA 5HQXA 2I0KA 4O95A 5L6GA 1FFVC 3AMZA 5I1VA 4JAYA 2VAOA 2VFRA 2W3RA 3NVZB 2Y08A 4PVHA 4PYTA 2Y4GA 5I1WA 3FWAA 4BC7A 3NVYB 1QLTA 3D2HA 4BCAA 1W1JA 1E8GA 2GQUA 3RJAA 2BVGA 2O3GA 3D2JA 1WYGA 4MLAA 1WVEA 5G5HB 1E0YA 4DNSA 1UXYA 1F0XA 3LLBA 3S1DA 2EXRA 3FW7A 4HG0A 2QKNA 2PLIA 4PVEA 3POPA 2R8DA 2IPIA 2P3HA 3S1FA 4PWCA 2VFTA 2UUUA 1N5XA 4JB1A 1MBTA 2VFUA 3W8ZA 2PLSA 5FXPA 1W1MA 1WVFA 3I99A 2QPMA 3HSUA 3C0PA 2RK5A 2VFSA 3NRZB 3TSJA 2BVHA 2Q4WA 1N5WC 1V97A 1N63C 5L6FA 2MBRA 5FXEA 3DEDA 3TX1A 1SB3B 5K8EA 1E8HA 1RM6B 1W1SA 1AHVA 4BBYA 3KJMA 1QLUA 1DIQA 2P13A 3HRDC 3ETRB 3JS8A 4OALA 2Q85A 5HHZA 1AHUA 2GQTA 1N60C 1W1KA 1DIIA 5ADZA 5HMRA 3PQBA 2OAIA 2BVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S1E A;  1JRO A;  1I19 A;  5FXF A;  4ML8 A;  1N61 C;  2AXR A;  5D79 A;  1MBB A;  3NS1 B;  1FO4 A;  3EUB 3;  1AHZ A;  3FW9 A;  4PZF A;  4PVJ A;  3AM9 A;  4UD8 A;  1VDV A;  2W54 A;  3DQ0 A;  1FIQ B;  3FW8 A;  4ZOH B;  3W8X A;  2Y3R A;  5FXD A;  1E8F A;  3SR6 B;  3RJ8 A;  3S1C A;  1N62 C;  2E3T A;  2VFV A;  5AWV A;  2W55 A;  5AE2 A;  3AN1 A;  1W1O A;  3W8W A;  1T3Q C;  5AE3 A;  4PWB A;  4XLO A;  4BC9 A;  3PM9 A;  1W1L A;  1W1Q A;  1ZXI C;  3D2D A;  3GSY A;  2Y3S A;  5AE1 A;  4EC3 A;  3B9J B;  4PVK A;  1FFU C;  1DZN A;  1HSK A;  1VAO A;  1W1R A;  2W3S A;  3TSH A;  2WDW A;  3BW7 A;  1ZR6 A;  3VTE A;  5HQX A;  2I0K A;  4O95 A;  5L6G A;  1FFV C;  3AMZ A;  5I1V A;  4JAY A;  2VAO A;  2VFR A;  2W3R A;  3NVZ B;  2Y08 A;  4PVH A;  4PYT A;  2Y4G A;  5I1W A;  3FWA A;  4BC7 A;  1QLT A;  3D2H A;  4BCA A;  1W1J A;  1E8G A;  2GQU A;  3RJA A;  2BVG A;  3D2J A;  1WYG A;  4MLA A;  1WVE A;  1E0Y A;  4DNS A;  1UXY A;  1F0X A;  3S1D A;  2EXR A;  3FW7 A;  2QKN A;  4PVE A;  3POP A;  2IPI A;  3S1F A;  4PWC A;  2VFT A;  1N5X A;  4JB1 A;  1MBT A;  2VFU A;  3W8Z A;  5FXP A;  1W1M A;  1WVF A;  3I99 A;  2QPM A;  3HSU A;  3C0P A;  2VFS A;  3NRZ B;  3TSJ A;  2BVH A;  2Q4W A;  1N5W C;  1V97 A;  1N63 C;  5L6F A;  2MBR A;  5FXE A;  3TX1 A;  5K8E A;  1E8H A;  1W1S A;  1AHV A;  4BBY A;  3KJM A;  1QLU A;  1DIQ A;  3ETR B;  3JS8 A;  4OAL A;  2Q85 A;  5HHZ A;  1AHU A;  2GQT A;  1N60 C;  1W1K A;  1DII A;  5ADZ A;  5HMR A;  3PQB A;  2BVF A; 
#chains in the Genus database with same CATH topology
 3S1E A;  1JRO A;  1I19 A;  5FXF A;  4ML8 A;  3EJE B;  1N61 C;  2AXR A;  5D79 A;  1MBB A;  3NS1 B;  1FO4 A;  3EUB 3;  2YVS A;  2NQW A;  1AHZ A;  3FW9 A;  2UUV A;  4PZF A;  4PVJ A;  3AM9 A;  4UD8 A;  1VDV A;  2W54 A;  3DQ0 A;  1FIQ B;  3FW8 A;  4ZOH B;  3W8X A;  2Y3R A;  5FXD A;  1E8F A;  3SR6 B;  3RJ8 A;  3S1C A;  1N62 C;  2E3T A;  2VFV A;  1JRP A;  5AWV A;  2W55 A;  5AE2 A;  3AN1 A;  1W1O A;  3W8W A;  1T3Q C;  5AE3 A;  4PWB A;  4XLO A;  4BC9 A;  3PM9 A;  5G5G B;  1W1L A;  1W1Q A;  3NVW B;  1ZXI C;  3D2D A;  3GSY A;  2Y3S A;  5AE1 A;  4EC3 A;  3LAE A;  3B9J B;  4PVK A;  1FFU C;  1DZN A;  1HSK A;  1VAO A;  1W1R A;  2W3S A;  3EJB B;  3TSH A;  3NVV B;  2P4P A;  2R2Z A;  2WDW A;  3BW7 A;  1ZR6 A;  3VTE A;  5HQX A;  2I0K A;  4O95 A;  5L6G A;  1FFV C;  3AMZ A;  5I1V A;  4JAY A;  2VAO A;  2VFR A;  2W3R A;  3NVZ B;  2Y08 A;  4PVH A;  4PYT A;  2Y4G A;  5I1W A;  3FWA A;  4BC7 A;  3NVY B;  1QLT A;  3D2H A;  4BCA A;  1W1J A;  1E8G A;  2GQU A;  3RJA A;  2BVG A;  2O3G A;  3D2J A;  1WYG A;  4MLA A;  1WVE A;  5G5H B;  1E0Y A;  3EJD B;  4DNS A;  1UXY A;  1F0X A;  3LLB A;  3S1D A;  2EXR A;  3FW7 A;  4HG0 A;  2QKN A;  2PLI A;  4PVE A;  3POP A;  2R8D A;  2IPI A;  2P3H A;  3S1F A;  4PWC A;  2VFT A;  2UUU A;  1N5X A;  4JB1 A;  1MBT A;  2VFU A;  3W8Z A;  2PLS A;  5FXP A;  1W1M A;  1WVF A;  3I99 A;  2QPM A;  3HSU A;  3C0P A;  2RK5 A;  2VFS A;  3NRZ B;  3TSJ A;  2BVH A;  2Q4W A;  1N5W C;  1V97 A;  1N63 C;  5L6F A;  2MBR A;  5FXE A;  3DED A;  3TX1 A;  1SB3 B;  5K8E A;  1E8H A;  1RM6 B;  1W1S A;  1AHV A;  4BBY A;  3KJM A;  1QLU A;  1DIQ A;  2P13 A;  3HRD C;  3ETR B;  3JS8 A;  4OAL A;  2Q85 A;  5HHZ A;  1AHU A;  2GQT A;  1N60 C;  1W1K A;  1DII A;  5ADZ A;  5HMR A;  3PQB A;  2OAI A;  2BVF A; 
#chains in the Genus database with same CATH homology
 3S1E A;  1JRO A;  1I19 A;  5FXF A;  4ML8 A;  1N61 C;  2AXR A;  5D79 A;  1MBB A;  3NS1 B;  1FO4 A;  3EUB 3;  2YVS A;  2NQW A;  1AHZ A;  3FW9 A;  2UUV A;  4PZF A;  4PVJ A;  3AM9 A;  4UD8 A;  1VDV A;  2W54 A;  3DQ0 A;  1FIQ B;  3FW8 A;  4ZOH B;  3W8X A;  2Y3R A;  5FXD A;  1E8F A;  3SR6 B;  3RJ8 A;  3S1C A;  1N62 C;  2E3T A;  2VFV A;  1JRP A;  5AWV A;  2W55 A;  5AE2 A;  3AN1 A;  1W1O A;  3W8W A;  1T3Q C;  5AE3 A;  4PWB A;  4XLO A;  4BC9 A;  3PM9 A;  5G5G B;  1W1L A;  1W1Q A;  3NVW B;  1ZXI C;  3D2D A;  3GSY A;  2Y3S A;  5AE1 A;  4EC3 A;  3LAE A;  3B9J B;  4PVK A;  1FFU C;  1DZN A;  1HSK A;  1VAO A;  1W1R A;  2W3S A;  3TSH A;  3NVV B;  2P4P A;  2R2Z A;  2WDW A;  3BW7 A;  1ZR6 A;  3VTE A;  5HQX A;  2I0K A;  4O95 A;  5L6G A;  1FFV C;  3AMZ A;  5I1V A;  4JAY A;  2VAO A;  2VFR A;  2W3R A;  3NVZ B;  2Y08 A;  4PVH A;  4PYT A;  2Y4G A;  5I1W A;  3FWA A;  4BC7 A;  3NVY B;  1QLT A;  3D2H A;  4BCA A;  1W1J A;  1E8G A;  2GQU A;  3RJA A;  2BVG A;  2O3G A;  3D2J A;  1WYG A;  4MLA A;  1WVE A;  5G5H B;  1E0Y A;  4DNS A;  1UXY A;  1F0X A;  3LLB A;  3S1D A;  2EXR A;  3FW7 A;  4HG0 A;  2QKN A;  2PLI A;  4PVE A;  3POP A;  2R8D A;  2IPI A;  2P3H A;  3S1F A;  4PWC A;  2VFT A;  2UUU A;  1N5X A;  4JB1 A;  1MBT A;  2VFU A;  3W8Z A;  2PLS A;  5FXP A;  1W1M A;  1WVF A;  3I99 A;  2QPM A;  3HSU A;  3C0P A;  2RK5 A;  2VFS A;  3NRZ B;  3TSJ A;  2BVH A;  2Q4W A;  1N5W C;  1V97 A;  1N63 C;  5L6F A;  2MBR A;  5FXE A;  3DED A;  3TX1 A;  1SB3 B;  5K8E A;  1E8H A;  1RM6 B;  1W1S A;  1AHV A;  4BBY A;  3KJM A;  1QLU A;  1DIQ A;  2P13 A;  3HRD C;  3ETR B;  3JS8 A;  4OAL A;  2Q85 A;  5HHZ A;  1AHU A;  2GQT A;  1N60 C;  1W1K A;  1DII A;  5ADZ A;  5HMR A;  3PQB A;  2OAI A;  2BVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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