5D79A

Structure of bbe-like #28 from arabidopsis thaliana
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
503
structure length
498
Chain Sequence
HEDFLKCLSYTVEPKVIHTSKDSSFFSILDSSIQNPRFSVSETPKPVSIITPVKASDVQTVIRCAQLHGIHVRTRSAGHCYEGLSYIAYNKPFAVIDLRNLRSISLDVDNRTGWVQTGATAGELYYEIGKTTKSLAFPAGIHPTVGVGGQFSGGGYGTLLRKYGLAADNIIDALVVDASGRILDRQAMGEDYFWAIRGGGGSSFGVILSWKVKLVDVPSTITVFKVQKTSKKEAVRIIKKWQYAADKVPDDLFIRTTLERSNKNAVHALFTGLYIGPVNNLLALMEEKFPELGLEKEGCEEMSWIESVLWFADFPKGESLGVLTNRERTSLSFKGKDDFVQEPIPEAAIQEIWRRLEAPEARLGKIILTPFGGKMSEMAEYETPFPHRGGNLYEIQYVAYWREEEDKNKTETDKYLKWVDSVYEFMTPYVSKSPRGAYVNFKDMDLGMYLGKKKTKYEEGKSWGVKYFKNNFERLVRVKTRVDPTDFFCDEQSIPLVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Arabidopsis thaliana
molecule keywords Berberine bridge enzyme-like protein
total genus 167
structure length 498
sequence length 503
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5d79A01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5d79A02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5d79A03
3W8WA 3ETRB 4OALA 1W1RA 1E8FA 2BVGA 2EXRA 2I0KA 1WVFA 2VAOA 4PVHA 3W8ZA 1FIQB 1HSKA 5HMRA 3DQ0A 5FXDA 2E3TA 1DIQA 1WVEA 4BC9A 5ADZA 3S1DA 4JAYA 5HQXA 1W1KA 2W54A 5AE2A 1AHZA 2Q85A 3FW9A 4PVJA 2W3SA 5I1VA 1W1LA 2Y3SA 1FFUC 2QPMA 5I1WA 3AN1A 4DNSA 3SR6B 2WDWA 1UXYA 4O95A 1FFVC 3D2DA 3TSHA 1MBBA 3EUB3 2Y4GA 1N61C 2QKNA 2VFUA 5L6FA 3AMZA 3D2JA 2AXRA 3NVZB 1E8HA 3POPA 1QLTA 3S1FA 4BCAA 2IPIA 4ZOHB 5AWVA 1VDVA 5L6GA 1AHUA 3HSUA 1N62C 3GSYA 4MLAA 1N60C 3KJMA 5HHZA 1DIIA 2Q4WA 1W1MA 2BVHA 2BVFA 1N63C 2VFRA 2W3RA 3S1EA 2Y3RA 4XLOA 1N5WC 4PVKA 1W1OA 4PZFA 1W1QA 3PQBA 1ZXIC 1N5XA 3NRZB 1W1SA 2GQTA 3RJ8A 4UD8A 3BW7A 1FO4A 2VFSA 3FW8A 4PVEA 1E8GA 5D79A 3PM9A 2Y08A 4PWBA 4BC7A 1MBTA 2MBRA 1JROA 3FWAA 3I99A 5FXEA 3JS8A 2GQUA 1T3QC 1WYGA 1AHVA 4PYTA 3VTEA 5AE3A 1VAOA 1ZR6A 1W1JA 3AM9A 5K8EA 1QLUA 1E0YA 4PWCA 3B9JB 2VFTA 3TSJA 1F0XA 3FW7A 5FXFA 5FXPA 1V97A 5AE1A 4BBYA 3D2HA 4EC3A 1I19A 2W55A 3W8XA 3TX1A 4JB1A 4ML8A 1DZNA 3NS1B 2VFVA 3C0PA 3S1CA 3RJAA
chains in the Genus database with same CATH superfamily
3W8WA 3ETRB 4OALA 1W1RA 1E8FA 2BVGA 2EXRA 3NVWB 2I0KA 1WVFA 2VAOA 4PVHA 3W8ZA 1FIQB 1HSKA 5HMRA 3DQ0A 5FXDA 2NQWA 2E3TA 1DIQA 1WVEA 4BC9A 5ADZA 3S1DA 4JAYA 5G5GB 5HQXA 1W1KA 3EJDB 2W54A 5AE2A 1AHZA 2Q85A 3FW9A 4PVJA 2W3SA 3HRDC 5I1VA 1RM6B 1W1LA 3LAEA 2Y3SA 1FFUC 2QPMA 2OAIA 5I1WA 2UUVA 3EJBB 3AN1A 4DNSA 3SR6B 2WDWA 3NVVB 1UXYA 4O95A 1FFVC 3D2DA 3TSHA 2YVSA 3LLBA 1MBBA 3EUB3 2Y4GA 1N61C 2QKNA 2VFUA 5L6FA 3AMZA 3D2JA 2AXRA 3NVZB 1E8HA 2PLIA 3POPA 1QLTA 2P3HA 3S1FA 4BCAA 2IPIA 4ZOHB 5AWVA 1VDVA 5L6GA 1AHUA 3HSUA 5G5HB 1N62C 3GSYA 1SB3B 4MLAA 2P4PA 1N60C 3KJMA 5HHZA 1DIIA 2Q4WA 1W1MA 3EJEB 2BVHA 2BVFA 1N63C 2VFRA 2W3RA 3S1EA 2Y3RA 4XLOA 1N5WC 4PVKA 1W1OA 4PZFA 1W1QA 3PQBA 1ZXIC 1N5XA 3NRZB 1W1SA 3NVYB 2GQTA 3RJ8A 4UD8A 3BW7A 1FO4A 3DEDA 2VFSA 3FW8A 4PVEA 1E8GA 5D79A 3PM9A 2Y08A 2R2ZA 4PWBA 4BC7A 1MBTA 2MBRA 1JROA 3FWAA 3I99A 5FXEA 3JS8A 2PLSA 2GQUA 1T3QC 2RK5A 1WYGA 1AHVA 4PYTA 2O3GA 3VTEA 5AE3A 1VAOA 1ZR6A 2P13A 1W1JA 3AM9A 5K8EA 1QLUA 1E0YA 4PWCA 1JRPA 3B9JB 2VFTA 3TSJA 1F0XA 3FW7A 5FXFA 5FXPA 2UUUA 1V97A 5AE1A 4BBYA 3D2HA 4EC3A 1I19A 2W55A 3W8XA 3TX1A 2R8DA 4JB1A 4ML8A 1DZNA 3NS1B 2VFVA 3C0PA 3S1CA 3RJAA 4HG0A
chains in the Genus database with same CATH topology
3W8WA 3ETRB 4OALA 1W1RA 1E8FA 2BVGA 2EXRA 3NVWB 2I0KA 1WVFA 2VAOA 4PVHA 3W8ZA 1FIQB 1HSKA 5HMRA 3DQ0A 5FXDA 2NQWA 2E3TA 1DIQA 1WVEA 4BC9A 5ADZA 3S1DA 4JAYA 5G5GB 5HQXA 1W1KA 2W54A 5AE2A 1AHZA 2Q85A 3FW9A 4PVJA 2W3SA 3HRDC 5I1VA 1RM6B 1W1LA 3LAEA 2Y3SA 1FFUC 2QPMA 2OAIA 5I1WA 2UUVA 3AN1A 4DNSA 3SR6B 2WDWA 3NVVB 1UXYA 4O95A 1FFVC 3D2DA 3TSHA 2YVSA 3LLBA 1MBBA 3EUB3 2Y4GA 1N61C 2QKNA 2VFUA 5L6FA 3AMZA 3D2JA 2AXRA 3NVZB 1E8HA 2PLIA 3POPA 1QLTA 2P3HA 3S1FA 4BCAA 2IPIA 4ZOHB 5AWVA 1VDVA 5L6GA 1AHUA 3HSUA 5G5HB 1N62C 3GSYA 1SB3B 4MLAA 2P4PA 1N60C 3KJMA 5HHZA 1DIIA 2Q4WA 1W1MA 2BVHA 2BVFA 1N63C 2VFRA 2W3RA 3S1EA 2Y3RA 4XLOA 1N5WC 4PVKA 1W1OA 4PZFA 1W1QA 3PQBA 1ZXIC 1N5XA 3NRZB 1W1SA 3NVYB 2GQTA 3RJ8A 4UD8A 3BW7A 1FO4A 3DEDA 2VFSA 3FW8A 4PVEA 1E8GA 5D79A 3PM9A 2Y08A 2R2ZA 4PWBA 4BC7A 1MBTA 2MBRA 1JROA 3FWAA 3I99A 5FXEA 3JS8A 2PLSA 2GQUA 1T3QC 2RK5A 1WYGA 1AHVA 4PYTA 2O3GA 3VTEA 5AE3A 1VAOA 1ZR6A 2P13A 1W1JA 3AM9A 5K8EA 1QLUA 1E0YA 4PWCA 1JRPA 3B9JB 2VFTA 3TSJA 1F0XA 3FW7A 5FXFA 5FXPA 2UUUA 1V97A 5AE1A 4BBYA 3D2HA 4EC3A 1I19A 2W55A 3W8XA 3TX1A 2R8DA 4JB1A 4ML8A 1DZNA 3NS1B 2VFVA 3C0PA 3S1CA 3RJAA 4HG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8W A;  3ETR B;  4OAL A;  1W1R A;  1E8F A;  2BVG A;  2EXR A;  2I0K A;  1WVF A;  2VAO A;  4PVH A;  3W8Z A;  1FIQ B;  1HSK A;  5HMR A;  3DQ0 A;  5FXD A;  2E3T A;  1DIQ A;  1WVE A;  4BC9 A;  5ADZ A;  3S1D A;  4JAY A;  5HQX A;  1W1K A;  2W54 A;  5AE2 A;  1AHZ A;  2Q85 A;  3FW9 A;  4PVJ A;  2W3S A;  5I1V A;  1W1L A;  2Y3S A;  1FFU C;  2QPM A;  5I1W A;  3AN1 A;  4DNS A;  3SR6 B;  2WDW A;  1UXY A;  4O95 A;  1FFV C;  3D2D A;  3TSH A;  1MBB A;  3EUB 3;  2Y4G A;  1N61 C;  2QKN A;  2VFU A;  5L6F A;  3AMZ A;  3D2J A;  2AXR A;  3NVZ B;  1E8H A;  3POP A;  1QLT A;  3S1F A;  4BCA A;  2IPI A;  4ZOH B;  5AWV A;  1VDV A;  5L6G A;  1AHU A;  3HSU A;  1N62 C;  3GSY A;  4MLA A;  1N60 C;  3KJM A;  5HHZ A;  1DII A;  2Q4W A;  1W1M A;  2BVH A;  2BVF A;  1N63 C;  2VFR A;  2W3R A;  3S1E A;  2Y3R A;  4XLO A;  1N5W C;  4PVK A;  1W1O A;  4PZF A;  1W1Q A;  3PQB A;  1ZXI C;  1N5X A;  3NRZ B;  1W1S A;  2GQT A;  3RJ8 A;  4UD8 A;  3BW7 A;  1FO4 A;  2VFS A;  3FW8 A;  4PVE A;  1E8G A;  5D79 A;  3PM9 A;  2Y08 A;  4PWB A;  4BC7 A;  1MBT A;  2MBR A;  1JRO A;  3FWA A;  3I99 A;  5FXE A;  3JS8 A;  2GQU A;  1T3Q C;  1WYG A;  1AHV A;  4PYT A;  3VTE A;  5AE3 A;  1VAO A;  1ZR6 A;  1W1J A;  3AM9 A;  5K8E A;  1QLU A;  1E0Y A;  4PWC A;  3B9J B;  2VFT A;  3TSJ A;  1F0X A;  3FW7 A;  5FXF A;  5FXP A;  1V97 A;  5AE1 A;  4BBY A;  3D2H A;  4EC3 A;  1I19 A;  2W55 A;  3W8X A;  3TX1 A;  4JB1 A;  4ML8 A;  1DZN A;  3NS1 B;  2VFV A;  3C0P A;  3S1C A;  3RJA A; 
#chains in the Genus database with same CATH topology
 3W8W A;  3ETR B;  4OAL A;  1W1R A;  1E8F A;  2BVG A;  2EXR A;  3NVW B;  2I0K A;  1WVF A;  2VAO A;  4PVH A;  3W8Z A;  1FIQ B;  1HSK A;  5HMR A;  3DQ0 A;  5FXD A;  2NQW A;  2E3T A;  1DIQ A;  1WVE A;  4BC9 A;  5ADZ A;  3S1D A;  4JAY A;  5G5G B;  5HQX A;  1W1K A;  3EJD B;  2W54 A;  5AE2 A;  1AHZ A;  2Q85 A;  3FW9 A;  4PVJ A;  2W3S A;  3HRD C;  5I1V A;  1RM6 B;  1W1L A;  3LAE A;  2Y3S A;  1FFU C;  2QPM A;  2OAI A;  5I1W A;  2UUV A;  3EJB B;  3AN1 A;  4DNS A;  3SR6 B;  2WDW A;  3NVV B;  1UXY A;  4O95 A;  1FFV C;  3D2D A;  3TSH A;  2YVS A;  3LLB A;  1MBB A;  3EUB 3;  2Y4G A;  1N61 C;  2QKN A;  2VFU A;  5L6F A;  3AMZ A;  3D2J A;  2AXR A;  3NVZ B;  1E8H A;  2PLI A;  3POP A;  1QLT A;  2P3H A;  3S1F A;  4BCA A;  2IPI A;  4ZOH B;  5AWV A;  1VDV A;  5L6G A;  1AHU A;  3HSU A;  5G5H B;  1N62 C;  3GSY A;  1SB3 B;  4MLA A;  2P4P A;  1N60 C;  3KJM A;  5HHZ A;  1DII A;  2Q4W A;  1W1M A;  3EJE B;  2BVH A;  2BVF A;  1N63 C;  2VFR A;  2W3R A;  3S1E A;  2Y3R A;  4XLO A;  1N5W C;  4PVK A;  1W1O A;  4PZF A;  1W1Q A;  3PQB A;  1ZXI C;  1N5X A;  3NRZ B;  1W1S A;  3NVY B;  2GQT A;  3RJ8 A;  4UD8 A;  3BW7 A;  1FO4 A;  3DED A;  2VFS A;  3FW8 A;  4PVE A;  1E8G A;  5D79 A;  3PM9 A;  2Y08 A;  2R2Z A;  4PWB A;  4BC7 A;  1MBT A;  2MBR A;  1JRO A;  3FWA A;  3I99 A;  5FXE A;  3JS8 A;  2PLS A;  2GQU A;  1T3Q C;  2RK5 A;  1WYG A;  1AHV A;  4PYT A;  2O3G A;  3VTE A;  5AE3 A;  1VAO A;  1ZR6 A;  2P13 A;  1W1J A;  3AM9 A;  5K8E A;  1QLU A;  1E0Y A;  4PWC A;  1JRP A;  3B9J B;  2VFT A;  3TSJ A;  1F0X A;  3FW7 A;  5FXF A;  5FXP A;  2UUU A;  1V97 A;  5AE1 A;  4BBY A;  3D2H A;  4EC3 A;  1I19 A;  2W55 A;  3W8X A;  3TX1 A;  2R8D A;  4JB1 A;  4ML8 A;  1DZN A;  3NS1 B;  2VFV A;  3C0P A;  3S1C A;  3RJA A;  4HG0 A; 
#chains in the Genus database with same CATH homology
 3W8W A;  3ETR B;  4OAL A;  1W1R A;  1E8F A;  2BVG A;  2EXR A;  3NVW B;  2I0K A;  1WVF A;  2VAO A;  4PVH A;  3W8Z A;  1FIQ B;  1HSK A;  5HMR A;  3DQ0 A;  5FXD A;  2NQW A;  2E3T A;  1DIQ A;  1WVE A;  4BC9 A;  5ADZ A;  3S1D A;  4JAY A;  5G5G B;  5HQX A;  1W1K A;  2W54 A;  5AE2 A;  1AHZ A;  2Q85 A;  3FW9 A;  4PVJ A;  2W3S A;  3HRD C;  5I1V A;  1RM6 B;  1W1L A;  3LAE A;  2Y3S A;  1FFU C;  2QPM A;  2OAI A;  5I1W A;  2UUV A;  3AN1 A;  4DNS A;  3SR6 B;  2WDW A;  3NVV B;  1UXY A;  4O95 A;  1FFV C;  3D2D A;  3TSH A;  2YVS A;  3LLB A;  1MBB A;  3EUB 3;  2Y4G A;  1N61 C;  2QKN A;  2VFU A;  5L6F A;  3AMZ A;  3D2J A;  2AXR A;  3NVZ B;  1E8H A;  2PLI A;  3POP A;  1QLT A;  2P3H A;  3S1F A;  4BCA A;  2IPI A;  4ZOH B;  5AWV A;  1VDV A;  5L6G A;  1AHU A;  3HSU A;  5G5H B;  1N62 C;  3GSY A;  1SB3 B;  4MLA A;  2P4P A;  1N60 C;  3KJM A;  5HHZ A;  1DII A;  2Q4W A;  1W1M A;  2BVH A;  2BVF A;  1N63 C;  2VFR A;  2W3R A;  3S1E A;  2Y3R A;  4XLO A;  1N5W C;  4PVK A;  1W1O A;  4PZF A;  1W1Q A;  3PQB A;  1ZXI C;  1N5X A;  3NRZ B;  1W1S A;  3NVY B;  2GQT A;  3RJ8 A;  4UD8 A;  3BW7 A;  1FO4 A;  3DED A;  2VFS A;  3FW8 A;  4PVE A;  1E8G A;  5D79 A;  3PM9 A;  2Y08 A;  2R2Z A;  4PWB A;  4BC7 A;  1MBT A;  2MBR A;  1JRO A;  3FWA A;  3I99 A;  5FXE A;  3JS8 A;  2PLS A;  2GQU A;  1T3Q C;  2RK5 A;  1WYG A;  1AHV A;  4PYT A;  2O3G A;  3VTE A;  5AE3 A;  1VAO A;  1ZR6 A;  2P13 A;  1W1J A;  3AM9 A;  5K8E A;  1QLU A;  1E0Y A;  4PWC A;  1JRP A;  3B9J B;  2VFT A;  3TSJ A;  1F0X A;  3FW7 A;  5FXF A;  5FXP A;  2UUU A;  1V97 A;  5AE1 A;  4BBY A;  3D2H A;  4EC3 A;  1I19 A;  2W55 A;  3W8X A;  3TX1 A;  2R8D A;  4JB1 A;  4ML8 A;  1DZN A;  3NS1 B;  2VFV A;  3C0P A;  3S1C A;  3RJA A;  4HG0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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