1W1JA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase: the505ser mutant
Total Genus 178
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRSHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Penicillium simplicissimum
publication title Laboratory-Evolved Vanillyl-Alcohol Oxidase Produces Natural Vanillin
pubmed doi rcsb
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 178
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2004-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1w1jA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1jA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1jA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1jA03
2GQTA 4ML8A 2Q4WA 1AHVA 1N62C 3EUB3 4DNSA 1SB3B 5FXPA 3D2HA 1W1QA 1QLUA 2EXRA 5AE1A 4PVKA 2OAIA 4PZFA 5HQXA 4PYTA 2RK5A 3NS1B 1VAOA 1W1OA 3ETRB 4BC7A 1RM6B 3DQ0A 1N60C 3HRDC 5FXEA 1UXYA 1QLTA 1DIQA 1WVEA 1I19A 1FO4A 1JROA 5ADZA 2VFTA 2W3RA 1V97A 3NVWB 3D2JA 2VFUA 2VAOA 5AE2A 4UD8A 1ZXIC 3LLBA 1W1KA 5FXDA 4PWBA 1WVFA 2PLIA 1N63C 2BVHA 3S1EA 2W54A 2MBRA 3S1FA 4ZOHB 4JB1A 2W3SA 2P4PA 4PVHA 3DEDA 4MLAA 1E8GA 2GQUA 1FIQB 1AHZA 1N5WC 5AE3A 2W55A 2QKNA 1HSKA 1JRPA 3S1DA 2BVFA 3NVYB 5G5GB 3JS8A 4PVJA 3FW8A 1E0YA 1W1MA 5D79A 3C0PA 2BVGA 2YVSA 3FW9A 2E3TA 3I99A 1DIIA 3FWAA 1W1SA 4OALA 1T3QC 3NRZB 3TSHA 2VFVA 2QPMA 3BW7A 2P3HA 1E8FA 3GSYA 1ZR6A 2VFSA 4BC9A 4BBYA 5FXFA 2AXRA 3W8ZA 4HG0A 3TX1A 2PLSA 2R2ZA 1W1JA 5HHZA 2O3GA 3AN1A 3PM9A 2VFRA 1DZNA 2R8DA 3AM9A 3D2DA 3S1CA 3B9JB 3LAEA 4PWCA 1MBTA 5G5HB 3TSJA 3NVZB 4EC3A 4BCAA 1N61C 3VTEA 2NQWA 4XLOA 1W1LA 4JAYA 3KJMA 3W8WA 1FFUC 3FW7A 1VDVA 5HMRA 1F0XA 2I0KA 1MBBA 1W1RA 1WYGA 1E8HA 3AMZA 3NVVB 2P13A 1AHUA 3SR6B 1FFVC 4O95A 1N5XA 4PVEA 2Q85A 3W8XA
chains in the Genus database with same CATH superfamily
2GQTA 4ML8A 2Q4WA 5K8EA 1AHVA 1N62C 3EUB3 4DNSA 1SB3B 5FXPA 3D2HA 1W1QA 1QLUA 2EXRA 5AE1A 4PVKA 2OAIA 4PZFA 3RJAA 5HQXA 4PYTA 2RK5A 2Y08A 3NS1B 1VAOA 1W1OA 3ETRB 4BC7A 1RM6B 3DQ0A 1N60C 3HRDC 5FXEA 1UXYA 3RJ8A 1QLTA 1DIQA 1WVEA 1I19A 1FO4A 1JROA 5ADZA 2VFTA 2W3RA 1V97A 3NVWB 3D2JA 2VFUA 2VAOA 5AE2A 4UD8A 1ZXIC 3LLBA 1W1KA 5L6FA 5FXDA 4PWBA 1WVFA 2PLIA 1N63C 3PQBA 2BVHA 3S1EA 2W54A 2MBRA 3S1FA 5AWVA 4ZOHB 4JB1A 2W3SA 2P4PA 4PVHA 2Y3SA 3DEDA 4MLAA 1E8GA 2GQUA 1FIQB 5I1WA 1AHZA 2WDWA 1N5WC 5AE3A 2W55A 2QKNA 1HSKA 1JRPA 3S1DA 2BVFA 3NVYB 5G5GB 3JS8A 4PVJA 3EJDB 3FW8A 1E0YA 1W1MA 5D79A 3C0PA 3EJBB 2BVGA 2YVSA 3EJEB 3FW9A 2E3TA 3I99A 1DIIA 3FWAA 2UUVA 1W1SA 4OALA 1T3QC 3NRZB 3TSHA 2VFVA 2QPMA 3BW7A 2P3HA 1E8FA 3GSYA 1ZR6A 2VFSA 2Y4GA 4BC9A 4BBYA 5FXFA 2AXRA 3W8ZA 4HG0A 3TX1A 2PLSA 2R2ZA 1W1JA 5HHZA 2O3GA 3AN1A 3PM9A 2VFRA 1DZNA 2UUUA 5I1VA 2R8DA 3AM9A 3D2DA 3S1CA 3B9JB 3LAEA 4PWCA 1MBTA 3HSUA 5G5HB 3TSJA 3NVZB 2Y3RA 4EC3A 4BCAA 1N61C 3VTEA 2NQWA 4XLOA 1W1LA 4JAYA 3KJMA 3W8WA 1FFUC 2IPIA 3FW7A 1VDVA 5HMRA 1F0XA 2I0KA 1MBBA 1W1RA 5L6GA 1WYGA 1E8HA 3AMZA 3NVVB 2P13A 1AHUA 3SR6B 1FFVC 4O95A 3POPA 1N5XA 4PVEA 2Q85A 3W8XA
chains in the Genus database with same CATH topology
2GQTA 4ML8A 2Q4WA 5K8EA 1AHVA 1N62C 3EUB3 4DNSA 1SB3B 5FXPA 3D2HA 1W1QA 1QLUA 2EXRA 5AE1A 4PVKA 2OAIA 4PZFA 3RJAA 5HQXA 4PYTA 2RK5A 2Y08A 3NS1B 1VAOA 1W1OA 3ETRB 4BC7A 1RM6B 3DQ0A 1N60C 3HRDC 5FXEA 1UXYA 3RJ8A 1QLTA 1DIQA 1WVEA 1I19A 1FO4A 1JROA 5ADZA 2VFTA 2W3RA 1V97A 3NVWB 3D2JA 2VFUA 2VAOA 5AE2A 4UD8A 1ZXIC 3LLBA 1W1KA 5L6FA 5FXDA 4PWBA 1WVFA 2PLIA 1N63C 3PQBA 2BVHA 3S1EA 2W54A 2MBRA 3S1FA 5AWVA 4ZOHB 4JB1A 2W3SA 2P4PA 4PVHA 2Y3SA 3DEDA 4MLAA 1E8GA 2GQUA 1FIQB 5I1WA 1AHZA 2WDWA 1N5WC 5AE3A 2W55A 2QKNA 1HSKA 1JRPA 3S1DA 2BVFA 3NVYB 5G5GB 3JS8A 4PVJA 3FW8A 1E0YA 1W1MA 5D79A 3C0PA 2BVGA 2YVSA 3FW9A 2E3TA 3I99A 1DIIA 3FWAA 2UUVA 1W1SA 4OALA 1T3QC 3NRZB 3TSHA 2VFVA 2QPMA 3BW7A 2P3HA 1E8FA 3GSYA 1ZR6A 2VFSA 2Y4GA 4BC9A 4BBYA 5FXFA 2AXRA 3W8ZA 4HG0A 3TX1A 2PLSA 2R2ZA 1W1JA 5HHZA 2O3GA 3AN1A 3PM9A 2VFRA 1DZNA 2UUUA 5I1VA 2R8DA 3AM9A 3D2DA 3S1CA 3B9JB 3LAEA 4PWCA 1MBTA 3HSUA 5G5HB 3TSJA 3NVZB 2Y3RA 4EC3A 4BCAA 1N61C 3VTEA 2NQWA 4XLOA 1W1LA 4JAYA 3KJMA 3W8WA 1FFUC 2IPIA 3FW7A 1VDVA 5HMRA 1F0XA 2I0KA 1MBBA 1W1RA 5L6GA 1WYGA 1E8HA 3AMZA 3NVVB 2P13A 1AHUA 3SR6B 1FFVC 4O95A 3POPA 1N5XA 4PVEA 2Q85A 3W8XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GQT A;  4ML8 A;  2Q4W A;  1AHV A;  1N62 C;  3EUB 3;  4DNS A;  1SB3 B;  5FXP A;  3D2H A;  1W1Q A;  1QLU A;  2EXR A;  5AE1 A;  4PVK A;  2OAI A;  4PZF A;  5HQX A;  4PYT A;  2RK5 A;  3NS1 B;  1VAO A;  1W1O A;  3ETR B;  4BC7 A;  1RM6 B;  3DQ0 A;  1N60 C;  3HRD C;  5FXE A;  1UXY A;  1QLT A;  1DIQ A;  1WVE A;  1I19 A;  1FO4 A;  1JRO A;  5ADZ A;  2VFT A;  2W3R A;  1V97 A;  3NVW B;  3D2J A;  2VFU A;  2VAO A;  5AE2 A;  4UD8 A;  1ZXI C;  3LLB A;  1W1K A;  5FXD A;  4PWB A;  1WVF A;  2PLI A;  1N63 C;  2BVH A;  3S1E A;  2W54 A;  2MBR A;  3S1F A;  4ZOH B;  4JB1 A;  2W3S A;  2P4P A;  4PVH A;  3DED A;  4MLA A;  1E8G A;  2GQU A;  1FIQ B;  1AHZ A;  1N5W C;  5AE3 A;  2W55 A;  2QKN A;  1HSK A;  1JRP A;  3S1D A;  2BVF A;  3NVY B;  5G5G B;  3JS8 A;  4PVJ A;  3FW8 A;  1E0Y A;  1W1M A;  5D79 A;  3C0P A;  2BVG A;  2YVS A;  3FW9 A;  2E3T A;  3I99 A;  1DII A;  3FWA A;  1W1S A;  4OAL A;  1T3Q C;  3NRZ B;  3TSH A;  2VFV A;  2QPM A;  3BW7 A;  2P3H A;  1E8F A;  3GSY A;  1ZR6 A;  2VFS A;  4BC9 A;  4BBY A;  5FXF A;  2AXR A;  3W8Z A;  4HG0 A;  3TX1 A;  2PLS A;  2R2Z A;  1W1J A;  5HHZ A;  2O3G A;  3AN1 A;  3PM9 A;  2VFR A;  1DZN A;  2R8D A;  3AM9 A;  3D2D A;  3S1C A;  3B9J B;  3LAE A;  4PWC A;  1MBT A;  5G5H B;  3TSJ A;  3NVZ B;  4EC3 A;  4BCA A;  1N61 C;  3VTE A;  2NQW A;  4XLO A;  1W1L A;  4JAY A;  3KJM A;  3W8W A;  1FFU C;  3FW7 A;  1VDV A;  5HMR A;  1F0X A;  2I0K A;  1MBB A;  1W1R A;  1WYG A;  1E8H A;  3AMZ A;  3NVV B;  2P13 A;  1AHU A;  3SR6 B;  1FFV C;  4O95 A;  1N5X A;  4PVE A;  2Q85 A;  3W8X A; 
#chains in the Genus database with same CATH topology
 2GQT A;  4ML8 A;  2Q4W A;  5K8E A;  1AHV A;  1N62 C;  3EUB 3;  4DNS A;  1SB3 B;  5FXP A;  3D2H A;  1W1Q A;  1QLU A;  2EXR A;  5AE1 A;  4PVK A;  2OAI A;  4PZF A;  3RJA A;  5HQX A;  4PYT A;  2RK5 A;  2Y08 A;  3NS1 B;  1VAO A;  1W1O A;  3ETR B;  4BC7 A;  1RM6 B;  3DQ0 A;  1N60 C;  3HRD C;  5FXE A;  1UXY A;  3RJ8 A;  1QLT A;  1DIQ A;  1WVE A;  1I19 A;  1FO4 A;  1JRO A;  5ADZ A;  2VFT A;  2W3R A;  1V97 A;  3NVW B;  3D2J A;  2VFU A;  2VAO A;  5AE2 A;  4UD8 A;  1ZXI C;  3LLB A;  1W1K A;  5L6F A;  5FXD A;  4PWB A;  1WVF A;  2PLI A;  1N63 C;  3PQB A;  2BVH A;  3S1E A;  2W54 A;  2MBR A;  3S1F A;  5AWV A;  4ZOH B;  4JB1 A;  2W3S A;  2P4P A;  4PVH A;  2Y3S A;  3DED A;  4MLA A;  1E8G A;  2GQU A;  1FIQ B;  5I1W A;  1AHZ A;  2WDW A;  1N5W C;  5AE3 A;  2W55 A;  2QKN A;  1HSK A;  1JRP A;  3S1D A;  2BVF A;  3NVY B;  5G5G B;  3JS8 A;  4PVJ A;  3EJD B;  3FW8 A;  1E0Y A;  1W1M A;  5D79 A;  3C0P A;  3EJB B;  2BVG A;  2YVS A;  3EJE B;  3FW9 A;  2E3T A;  3I99 A;  1DII A;  3FWA A;  2UUV A;  1W1S A;  4OAL A;  1T3Q C;  3NRZ B;  3TSH A;  2VFV A;  2QPM A;  3BW7 A;  2P3H A;  1E8F A;  3GSY A;  1ZR6 A;  2VFS A;  2Y4G A;  4BC9 A;  4BBY A;  5FXF A;  2AXR A;  3W8Z A;  4HG0 A;  3TX1 A;  2PLS A;  2R2Z A;  1W1J A;  5HHZ A;  2O3G A;  3AN1 A;  3PM9 A;  2VFR A;  1DZN A;  2UUU A;  5I1V A;  2R8D A;  3AM9 A;  3D2D A;  3S1C A;  3B9J B;  3LAE A;  4PWC A;  1MBT A;  3HSU A;  5G5H B;  3TSJ A;  3NVZ B;  2Y3R A;  4EC3 A;  4BCA A;  1N61 C;  3VTE A;  2NQW A;  4XLO A;  1W1L A;  4JAY A;  3KJM A;  3W8W A;  1FFU C;  2IPI A;  3FW7 A;  1VDV A;  5HMR A;  1F0X A;  2I0K A;  1MBB A;  1W1R A;  5L6G A;  1WYG A;  1E8H A;  3AMZ A;  3NVV B;  2P13 A;  1AHU A;  3SR6 B;  1FFV C;  4O95 A;  3POP A;  1N5X A;  4PVE A;  2Q85 A;  3W8X A; 
#chains in the Genus database with same CATH homology
 2GQT A;  4ML8 A;  2Q4W A;  5K8E A;  1AHV A;  1N62 C;  3EUB 3;  4DNS A;  1SB3 B;  5FXP A;  3D2H A;  1W1Q A;  1QLU A;  2EXR A;  5AE1 A;  4PVK A;  2OAI A;  4PZF A;  3RJA A;  5HQX A;  4PYT A;  2RK5 A;  2Y08 A;  3NS1 B;  1VAO A;  1W1O A;  3ETR B;  4BC7 A;  1RM6 B;  3DQ0 A;  1N60 C;  3HRD C;  5FXE A;  1UXY A;  3RJ8 A;  1QLT A;  1DIQ A;  1WVE A;  1I19 A;  1FO4 A;  1JRO A;  5ADZ A;  2VFT A;  2W3R A;  1V97 A;  3NVW B;  3D2J A;  2VFU A;  2VAO A;  5AE2 A;  4UD8 A;  1ZXI C;  3LLB A;  1W1K A;  5L6F A;  5FXD A;  4PWB A;  1WVF A;  2PLI A;  1N63 C;  3PQB A;  2BVH A;  3S1E A;  2W54 A;  2MBR A;  3S1F A;  5AWV A;  4ZOH B;  4JB1 A;  2W3S A;  2P4P A;  4PVH A;  2Y3S A;  3DED A;  4MLA A;  1E8G A;  2GQU A;  1FIQ B;  5I1W A;  1AHZ A;  2WDW A;  1N5W C;  5AE3 A;  2W55 A;  2QKN A;  1HSK A;  1JRP A;  3S1D A;  2BVF A;  3NVY B;  5G5G B;  3JS8 A;  4PVJ A;  3FW8 A;  1E0Y A;  1W1M A;  5D79 A;  3C0P A;  2BVG A;  2YVS A;  3FW9 A;  2E3T A;  3I99 A;  1DII A;  3FWA A;  2UUV A;  1W1S A;  4OAL A;  1T3Q C;  3NRZ B;  3TSH A;  2VFV A;  2QPM A;  3BW7 A;  2P3H A;  1E8F A;  3GSY A;  1ZR6 A;  2VFS A;  2Y4G A;  4BC9 A;  4BBY A;  5FXF A;  2AXR A;  3W8Z A;  4HG0 A;  3TX1 A;  2PLS A;  2R2Z A;  1W1J A;  5HHZ A;  2O3G A;  3AN1 A;  3PM9 A;  2VFR A;  1DZN A;  2UUU A;  5I1V A;  2R8D A;  3AM9 A;  3D2D A;  3S1C A;  3B9J B;  3LAE A;  4PWC A;  1MBT A;  3HSU A;  5G5H B;  3TSJ A;  3NVZ B;  2Y3R A;  4EC3 A;  4BCA A;  1N61 C;  3VTE A;  2NQW A;  4XLO A;  1W1L A;  4JAY A;  3KJM A;  3W8W A;  1FFU C;  2IPI A;  3FW7 A;  1VDV A;  5HMR A;  1F0X A;  2I0K A;  1MBB A;  1W1R A;  5L6G A;  1WYG A;  1E8H A;  3AMZ A;  3NVV B;  2P13 A;  1AHU A;  3SR6 B;  1FFV C;  4O95 A;  3POP A;  1N5X A;  4PVE A;  2Q85 A;  3W8X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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