1W1QA

Plant cytokinin dehydrogenase in complex with isopentenyladenine
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CYTOKININ DEHYDROGENASE 1
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 165
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1qA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1qA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1qA03
3TX1A 2BVFA 1E0YA 5G5GB 2NQWA 2P13A 4ML8A 3AN1A 2MBRA 2PLIA 3NVVB 1AHUA 2VFRA 3FW7A 1N5XA 1W1MA 2W3RA 1FFVC 1MBBA 4JB1A 1DIQA 2I0KA 5FXFA 3W8WA 1W1JA 3NS1B 3FW8A 4BC7A 1VDVA 2VFUA 4HG0A 3EUB3 4BCAA 3HRDC 1FO4A 2QPMA 4MLAA 1FFUC 3S1EA 5AE1A 5HHZA 4BBYA 2O3GA 3GSYA 4PVKA 3TSJA 1UXYA 5FXEA 3D2HA 4PZFA 3NVZB 2R8DA 1W1KA 3TSHA 3B9JB 4OALA 5HQXA 2R2ZA 1AHZA 1JROA 1I19A 5ADZA 2RK5A 4UD8A 3LAEA 2BVHA 1E8HA 1W1LA 4PWCA 1QLUA 1W1QA 1ZR6A 1FIQB 2GQTA 3D2DA 3C0PA 4PVJA 2YVSA 4JAYA 1MBTA 3D2JA 1DIIA 4PWBA 1RM6B 2QKNA 1JRPA 3DQ0A 1E8FA 1E8GA 4BC9A 4PYTA 2VAOA 3ETRB 2W55A 3NVWB 1SB3B 3AMZA 1VAOA 4PVEA 3S1DA 2AXRA 1WVEA 4ZOHB 5FXDA 4XLOA 3AM9A 2BVGA 2P3HA 4DNSA 2W54A 1V97A 3VTEA 3S1FA 1WVFA 1WYGA 4EC3A 1N61C 2PLSA 3NVYB 1W1OA 3W8ZA 3LLBA 2P4PA 3I99A 1QLTA 3BW7A 3FWAA 1F0XA 5D79A 3NRZB 2VFTA 3DEDA 2OAIA 2Q85A 1T3QC 1W1SA 4PVHA 1AHVA 3SR6B 1N60C 1ZXIC 3FW9A 5HMRA 1DZNA 1N5WC 3KJMA 2EXRA 5G5HB 2VFSA 5AE3A 3S1CA 2VFVA 4O95A 2W3SA 3PM9A 2GQUA 5FXPA 2Q4WA 5AE2A 1N63C 1W1RA 3JS8A 1N62C 2E3TA 3W8XA 1HSKA
chains in the Genus database with same CATH superfamily
3TX1A 2BVFA 1E0YA 5G5GB 2UUUA 2NQWA 2P13A 4ML8A 3AN1A 2MBRA 3NVVB 2PLIA 1AHUA 2VFRA 3RJAA 3FW7A 1N5XA 1W1MA 2W3RA 5AWVA 1FFVC 1MBBA 4JB1A 1DIQA 2I0KA 3RJ8A 5FXFA 2WDWA 3W8WA 1W1JA 3NS1B 3FW8A 4BC7A 1VDVA 2VFUA 4HG0A 3EUB3 4BCAA 3HRDC 3PQBA 1FO4A 2QPMA 4MLAA 1FFUC 3S1EA 5AE1A 5HHZA 4BBYA 2O3GA 3GSYA 4PVKA 3TSJA 1UXYA 5FXEA 3D2HA 5L6FA 4PZFA 3NVZB 2R8DA 1W1KA 3TSHA 2UUVA 3B9JB 4OALA 5HQXA 2R2ZA 1AHZA 1JROA 5L6GA 1I19A 5ADZA 2RK5A 2IPIA 4UD8A 3LAEA 2BVHA 1E8HA 1W1LA 4PWCA 1QLUA 1W1QA 1ZR6A 3EJBB 1FIQB 2GQTA 3D2DA 3C0PA 4PVJA 2YVSA 4JAYA 1MBTA 3D2JA 1DIIA 4PWBA 1RM6B 2QKNA 1JRPA 3DQ0A 1E8FA 1E8GA 4BC9A 4PYTA 2VAOA 3ETRB 2Y3RA 3EJEB 2W55A 3NVWB 1SB3B 3AMZA 1VAOA 4PVEA 3S1DA 5I1VA 2AXRA 1WVEA 4ZOHB 5FXDA 4XLOA 3POPA 3AM9A 2BVGA 2P3HA 4DNSA 2W54A 1V97A 3VTEA 3S1FA 1WVFA 1WYGA 3NVYB 1N61C 4EC3A 2PLSA 3HSUA 1W1OA 3W8ZA 3LLBA 2P4PA 3I99A 1QLTA 3BW7A 3FWAA 1F0XA 5D79A 3NRZB 2VFTA 5K8EA 3DEDA 2OAIA 2Y3SA 2Q85A 1T3QC 1W1SA 4PVHA 5I1WA 1AHVA 3SR6B 1N60C 1ZXIC 3FW9A 5HMRA 1DZNA 1N5WC 3KJMA 2EXRA 5G5HB 2VFSA 5AE3A 3S1CA 2VFVA 3EJDB 4O95A 2W3SA 3PM9A 2GQUA 5FXPA 2Q4WA 2Y08A 5AE2A 1N63C 1W1RA 3JS8A 1N62C 2E3TA 3W8XA 2Y4GA 1HSKA
chains in the Genus database with same CATH topology
3TX1A 2BVFA 1E0YA 5G5GB 2UUUA 2NQWA 2P13A 4ML8A 3AN1A 2MBRA 2PLIA 3NVVB 1AHUA 2VFRA 3RJAA 3FW7A 1N5XA 1W1MA 2W3RA 5AWVA 1FFVC 1MBBA 4JB1A 1DIQA 2I0KA 3RJ8A 5FXFA 2WDWA 3W8WA 1W1JA 3NS1B 3FW8A 4BC7A 1VDVA 2VFUA 4HG0A 3EUB3 4BCAA 3HRDC 3PQBA 1FO4A 2QPMA 4MLAA 1FFUC 3S1EA 5AE1A 5HHZA 4BBYA 2O3GA 3GSYA 4PVKA 3TSJA 1UXYA 5FXEA 3D2HA 5L6FA 4PZFA 3NVZB 2R8DA 1W1KA 3TSHA 2UUVA 3B9JB 4OALA 5HQXA 2R2ZA 1AHZA 1JROA 5L6GA 1I19A 5ADZA 2RK5A 2IPIA 4UD8A 3LAEA 2BVHA 1E8HA 1W1LA 4PWCA 1QLUA 1W1QA 1ZR6A 1FIQB 2GQTA 3D2DA 3C0PA 4PVJA 2YVSA 4JAYA 1MBTA 3D2JA 1DIIA 4PWBA 1RM6B 2QKNA 1JRPA 3DQ0A 1E8FA 1E8GA 4BC9A 4PYTA 2VAOA 3ETRB 2Y3RA 2W55A 3NVWB 1SB3B 3AMZA 1VAOA 4PVEA 3S1DA 5I1VA 2AXRA 1WVEA 4ZOHB 5FXDA 4XLOA 3POPA 3AM9A 2BVGA 2P3HA 4DNSA 2W54A 1V97A 3VTEA 3S1FA 1WVFA 1WYGA 4EC3A 1N61C 2PLSA 3HSUA 3NVYB 1W1OA 3W8ZA 3LLBA 2P4PA 3I99A 1QLTA 3BW7A 3FWAA 1F0XA 5D79A 3NRZB 2VFTA 5K8EA 3DEDA 2OAIA 2Y3SA 2Q85A 1T3QC 1W1SA 4PVHA 5I1WA 1AHVA 3SR6B 1N60C 1ZXIC 3FW9A 5HMRA 1DZNA 1N5WC 3KJMA 2EXRA 5G5HB 2VFSA 5AE3A 3S1CA 2VFVA 4O95A 2W3SA 3PM9A 2GQUA 5FXPA 2Q4WA 2Y08A 5AE2A 1N63C 1W1RA 3JS8A 1N62C 2E3TA 3W8XA 2Y4GA 1HSKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TX1 A;  2BVF A;  1E0Y A;  5G5G B;  2NQW A;  2P13 A;  4ML8 A;  3AN1 A;  2MBR A;  2PLI A;  3NVV B;  1AHU A;  2VFR A;  3FW7 A;  1N5X A;  1W1M A;  2W3R A;  1FFV C;  1MBB A;  4JB1 A;  1DIQ A;  2I0K A;  5FXF A;  3W8W A;  1W1J A;  3NS1 B;  3FW8 A;  4BC7 A;  1VDV A;  2VFU A;  4HG0 A;  3EUB 3;  4BCA A;  3HRD C;  1FO4 A;  2QPM A;  4MLA A;  1FFU C;  3S1E A;  5AE1 A;  5HHZ A;  4BBY A;  2O3G A;  3GSY A;  4PVK A;  3TSJ A;  1UXY A;  5FXE A;  3D2H A;  4PZF A;  3NVZ B;  2R8D A;  1W1K A;  3TSH A;  3B9J B;  4OAL A;  5HQX A;  2R2Z A;  1AHZ A;  1JRO A;  1I19 A;  5ADZ A;  2RK5 A;  4UD8 A;  3LAE A;  2BVH A;  1E8H A;  1W1L A;  4PWC A;  1QLU A;  1W1Q A;  1ZR6 A;  1FIQ B;  2GQT A;  3D2D A;  3C0P A;  4PVJ A;  2YVS A;  4JAY A;  1MBT A;  3D2J A;  1DII A;  4PWB A;  1RM6 B;  2QKN A;  1JRP A;  3DQ0 A;  1E8F A;  1E8G A;  4BC9 A;  4PYT A;  2VAO A;  3ETR B;  2W55 A;  3NVW B;  1SB3 B;  3AMZ A;  1VAO A;  4PVE A;  3S1D A;  2AXR A;  1WVE A;  4ZOH B;  5FXD A;  4XLO A;  3AM9 A;  2BVG A;  2P3H A;  4DNS A;  2W54 A;  1V97 A;  3VTE A;  3S1F A;  1WVF A;  1WYG A;  4EC3 A;  1N61 C;  2PLS A;  3NVY B;  1W1O A;  3W8Z A;  3LLB A;  2P4P A;  3I99 A;  1QLT A;  3BW7 A;  3FWA A;  1F0X A;  5D79 A;  3NRZ B;  2VFT A;  3DED A;  2OAI A;  2Q85 A;  1T3Q C;  1W1S A;  4PVH A;  1AHV A;  3SR6 B;  1N60 C;  1ZXI C;  3FW9 A;  5HMR A;  1DZN A;  1N5W C;  3KJM A;  2EXR A;  5G5H B;  2VFS A;  5AE3 A;  3S1C A;  2VFV A;  4O95 A;  2W3S A;  3PM9 A;  2GQU A;  5FXP A;  2Q4W A;  5AE2 A;  1N63 C;  1W1R A;  3JS8 A;  1N62 C;  2E3T A;  3W8X A;  1HSK A; 
#chains in the Genus database with same CATH topology
 3TX1 A;  2BVF A;  1E0Y A;  5G5G B;  2UUU A;  2NQW A;  2P13 A;  4ML8 A;  3AN1 A;  2MBR A;  3NVV B;  2PLI A;  1AHU A;  2VFR A;  3RJA A;  3FW7 A;  1N5X A;  1W1M A;  2W3R A;  5AWV A;  1FFV C;  1MBB A;  4JB1 A;  1DIQ A;  2I0K A;  3RJ8 A;  5FXF A;  2WDW A;  3W8W A;  1W1J A;  3NS1 B;  3FW8 A;  4BC7 A;  1VDV A;  2VFU A;  4HG0 A;  3EUB 3;  4BCA A;  3HRD C;  3PQB A;  1FO4 A;  2QPM A;  4MLA A;  1FFU C;  3S1E A;  5AE1 A;  5HHZ A;  4BBY A;  2O3G A;  3GSY A;  4PVK A;  3TSJ A;  1UXY A;  5FXE A;  3D2H A;  5L6F A;  4PZF A;  3NVZ B;  2R8D A;  1W1K A;  3TSH A;  2UUV A;  3B9J B;  4OAL A;  5HQX A;  2R2Z A;  1AHZ A;  1JRO A;  5L6G A;  1I19 A;  5ADZ A;  2RK5 A;  2IPI A;  4UD8 A;  3LAE A;  2BVH A;  1E8H A;  1W1L A;  4PWC A;  1QLU A;  1W1Q A;  1ZR6 A;  3EJB B;  1FIQ B;  2GQT A;  3D2D A;  3C0P A;  4PVJ A;  2YVS A;  4JAY A;  1MBT A;  3D2J A;  1DII A;  4PWB A;  1RM6 B;  2QKN A;  1JRP A;  3DQ0 A;  1E8F A;  1E8G A;  4BC9 A;  4PYT A;  2VAO A;  3ETR B;  2Y3R A;  3EJE B;  2W55 A;  3NVW B;  1SB3 B;  3AMZ A;  1VAO A;  4PVE A;  3S1D A;  5I1V A;  2AXR A;  1WVE A;  4ZOH B;  5FXD A;  4XLO A;  3POP A;  3AM9 A;  2BVG A;  2P3H A;  4DNS A;  2W54 A;  1V97 A;  3VTE A;  3S1F A;  1WVF A;  1WYG A;  3NVY B;  1N61 C;  4EC3 A;  2PLS A;  3HSU A;  1W1O A;  3W8Z A;  3LLB A;  2P4P A;  3I99 A;  1QLT A;  3BW7 A;  3FWA A;  1F0X A;  5D79 A;  3NRZ B;  2VFT A;  5K8E A;  3DED A;  2OAI A;  2Y3S A;  2Q85 A;  1T3Q C;  1W1S A;  4PVH A;  5I1W A;  1AHV A;  3SR6 B;  1N60 C;  1ZXI C;  3FW9 A;  5HMR A;  1DZN A;  1N5W C;  3KJM A;  2EXR A;  5G5H B;  2VFS A;  5AE3 A;  3S1C A;  2VFV A;  3EJD B;  4O95 A;  2W3S A;  3PM9 A;  2GQU A;  5FXP A;  2Q4W A;  2Y08 A;  5AE2 A;  1N63 C;  1W1R A;  3JS8 A;  1N62 C;  2E3T A;  3W8X A;  2Y4G A;  1HSK A; 
#chains in the Genus database with same CATH homology
 3TX1 A;  2BVF A;  1E0Y A;  5G5G B;  2UUU A;  2NQW A;  2P13 A;  4ML8 A;  3AN1 A;  2MBR A;  2PLI A;  3NVV B;  1AHU A;  2VFR A;  3RJA A;  3FW7 A;  1N5X A;  1W1M A;  2W3R A;  5AWV A;  1FFV C;  1MBB A;  4JB1 A;  1DIQ A;  2I0K A;  3RJ8 A;  5FXF A;  2WDW A;  3W8W A;  1W1J A;  3NS1 B;  3FW8 A;  4BC7 A;  1VDV A;  2VFU A;  4HG0 A;  3EUB 3;  4BCA A;  3HRD C;  3PQB A;  1FO4 A;  2QPM A;  4MLA A;  1FFU C;  3S1E A;  5AE1 A;  5HHZ A;  4BBY A;  2O3G A;  3GSY A;  4PVK A;  3TSJ A;  1UXY A;  5FXE A;  3D2H A;  5L6F A;  4PZF A;  3NVZ B;  2R8D A;  1W1K A;  3TSH A;  2UUV A;  3B9J B;  4OAL A;  5HQX A;  2R2Z A;  1AHZ A;  1JRO A;  5L6G A;  1I19 A;  5ADZ A;  2RK5 A;  2IPI A;  4UD8 A;  3LAE A;  2BVH A;  1E8H A;  1W1L A;  4PWC A;  1QLU A;  1W1Q A;  1ZR6 A;  1FIQ B;  2GQT A;  3D2D A;  3C0P A;  4PVJ A;  2YVS A;  4JAY A;  1MBT A;  3D2J A;  1DII A;  4PWB A;  1RM6 B;  2QKN A;  1JRP A;  3DQ0 A;  1E8F A;  1E8G A;  4BC9 A;  4PYT A;  2VAO A;  3ETR B;  2Y3R A;  2W55 A;  3NVW B;  1SB3 B;  3AMZ A;  1VAO A;  4PVE A;  3S1D A;  5I1V A;  2AXR A;  1WVE A;  4ZOH B;  5FXD A;  4XLO A;  3POP A;  3AM9 A;  2BVG A;  2P3H A;  4DNS A;  2W54 A;  1V97 A;  3VTE A;  3S1F A;  1WVF A;  1WYG A;  4EC3 A;  1N61 C;  2PLS A;  3HSU A;  3NVY B;  1W1O A;  3W8Z A;  3LLB A;  2P4P A;  3I99 A;  1QLT A;  3BW7 A;  3FWA A;  1F0X A;  5D79 A;  3NRZ B;  2VFT A;  5K8E A;  3DED A;  2OAI A;  2Y3S A;  2Q85 A;  1T3Q C;  1W1S A;  4PVH A;  5I1W A;  1AHV A;  3SR6 B;  1N60 C;  1ZXI C;  3FW9 A;  5HMR A;  1DZN A;  1N5W C;  3KJM A;  2EXR A;  5G5H B;  2VFS A;  5AE3 A;  3S1C A;  2VFV A;  4O95 A;  2W3S A;  3PM9 A;  2GQU A;  5FXP A;  2Q4W A;  2Y08 A;  5AE2 A;  1N63 C;  1W1R A;  3JS8 A;  1N62 C;  2E3T A;  3W8X A;  2Y4G A;  1HSK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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