1W1QA

Plant cytokinin dehydrogenase in complex with isopentenyladenine
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords CYTOKININ DEHYDROGENASE 1
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
source organism Zea mays
total genus 165
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1qA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1qA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1qA03
3LAEA 3EUB3 3I99A 4PWCA 1QLTA 3VTEA 4BC9A 3B9JB 3AN1A 1W1JA 1MBBA 3W8WA 4DNSA 1VAOA 2YVSA 1FFUC 2W3RA 3DEDA 3SR6B 1N61C 2GQTA 5FXFA 4HG0A 1WVEA 3NVVB 1FIQB 4PVEA 1W1KA 1WYGA 5G5HB 1W1LA 2VFRA 4JB1A 1ZR6A 2PLSA 1JROA 1AHUA 2VAOA 4OALA 4PWBA 1AHVA 2OAIA 1W1OA 2Q85A 1DIIA 1E8FA 1DZNA 2Q4WA 3W8XA 3S1CA 1W1RA 1F0XA 4ML8A 5D79A 2W55A 3NRZB 3TX1A 4XLOA 3S1FA 1DIQA 1W1SA 1HSKA 3C0PA 1N5XA 3PM9A 5G5GB 5ADZA 2QPMA 4EC3A 5AE2A 1FO4A 5AE1A 2P4PA 1FFVC 4ZOHB 4BCAA 2R8DA 2E3TA 1E0YA 3NVZB 3W8ZA 2O3GA 2MBRA 1VDVA 4BC7A 2QKNA 1N5WC 3FW9A 4MLAA 5HQXA 3AMZA 1V97A 3BW7A 3D2HA 2AXRA 4JAYA 1UXYA 3KJMA 1E8HA 2PLIA 4UD8A 5FXEA 2I0KA 1AHZA 3TSJA 3S1DA 2EXRA 3FW7A 2W3SA 1JRPA 3D2DA 2W54A 3FWAA 3TSHA 2VFTA 3DQ0A 4BBYA 2BVFA 1RM6B 2VFVA 1QLUA 3GSYA 4O95A 5HMRA 1T3QC 1WVFA 2VFSA 2NQWA 3LLBA 1ZXIC 3JS8A 3NS1B 2BVGA 3NVWB 1E8GA 4PVHA 5AE3A 1N60C 4PVJA 5HHZA 3FW8A 3NVYB 2R2ZA 1W1QA 3ETRB 5FXPA 4PYTA 5FXDA 1W1MA 1MBTA 2VFUA 1I19A 1N62C 1N63C 3S1EA 2BVHA 1SB3B 3AM9A 2GQUA 4PZFA 3D2JA 2RK5A 3HRDC 2P3HA 2P13A 4PVKA
chains in the Genus database with same CATH superfamily
3LAEA 3EUB3 3I99A 4PWCA 1QLTA 3VTEA 3PQBA 4BC9A 3HSUA 3B9JB 5L6FA 3AN1A 1W1JA 1MBBA 3W8WA 4DNSA 2UUUA 2Y08A 1VAOA 2YVSA 1FFUC 2W3RA 3DEDA 3SR6B 1N61C 2GQTA 5FXFA 4HG0A 1WVEA 3NVVB 1FIQB 4PVEA 1W1KA 1WYGA 3RJ8A 5G5HB 1W1LA 2VFRA 4JB1A 1ZR6A 2PLSA 1JROA 1AHUA 2VAOA 4OALA 4PWBA 1AHVA 2OAIA 1W1OA 2Q85A 3EJBB 1DIIA 1E8FA 1DZNA 2Q4WA 3W8XA 3S1CA 1W1RA 1F0XA 4ML8A 5D79A 2W55A 3NRZB 3EJEB 2IPIA 3TX1A 4XLOA 3S1FA 3RJAA 1DIQA 1W1SA 1HSKA 3C0PA 1N5XA 3PM9A 5G5GB 5ADZA 2QPMA 4EC3A 5AE2A 1FO4A 5AE1A 2P4PA 5I1VA 1FFVC 4ZOHB 5L6GA 4BCAA 2R8DA 2E3TA 2Y3RA 1E0YA 2WDWA 3NVZB 3W8ZA 2O3GA 2MBRA 1VDVA 4BC7A 2QKNA 2UUVA 1N5WC 3FW9A 4MLAA 5HQXA 3AMZA 3EJDB 1V97A 3BW7A 3D2HA 2AXRA 4JAYA 1UXYA 3KJMA 1E8HA 2PLIA 4UD8A 5FXEA 2I0KA 5AWVA 1AHZA 3TSJA 3S1DA 2EXRA 3FW7A 2W3SA 1JRPA 3D2DA 2W54A 5I1WA 5K8EA 3FWAA 3TSHA 2VFTA 3DQ0A 4BBYA 2BVFA 1RM6B 2VFVA 1QLUA 3GSYA 4O95A 5HMRA 1T3QC 1WVFA 2VFSA 2NQWA 3LLBA 1ZXIC 3JS8A 3NS1B 2BVGA 3NVWB 2Y4GA 1E8GA 4PVHA 5AE3A 1N60C 4PVJA 5HHZA 3FW8A 3NVYB 2R2ZA 1W1QA 3ETRB 5FXPA 4PYTA 5FXDA 1W1MA 1MBTA 2VFUA 1I19A 1N62C 1N63C 3S1EA 2BVHA 1SB3B 2Y3SA 3AM9A 2GQUA 4PZFA 3POPA 3D2JA 2RK5A 3HRDC 2P3HA 2P13A 4PVKA
chains in the Genus database with same CATH topology
3LAEA 3EUB3 3I99A 4PWCA 1QLTA 3VTEA 3PQBA 4BC9A 3HSUA 3B9JB 5L6FA 3AN1A 1W1JA 1MBBA 3W8WA 4DNSA 2UUUA 2Y08A 1VAOA 2YVSA 1FFUC 2W3RA 3DEDA 3SR6B 1N61C 2GQTA 5FXFA 4HG0A 1WVEA 3NVVB 1FIQB 4PVEA 1W1KA 1WYGA 3RJ8A 5G5HB 1W1LA 2VFRA 4JB1A 1ZR6A 2PLSA 1JROA 1AHUA 2VAOA 4OALA 4PWBA 1AHVA 2OAIA 1W1OA 2Q85A 1DIIA 1E8FA 1DZNA 2Q4WA 3W8XA 3S1CA 1W1RA 1F0XA 4ML8A 5D79A 2W55A 3NRZB 2IPIA 3TX1A 4XLOA 3S1FA 3RJAA 1DIQA 1W1SA 1HSKA 3C0PA 1N5XA 3PM9A 5G5GB 5ADZA 2QPMA 4EC3A 5AE2A 1FO4A 5AE1A 2P4PA 5I1VA 1FFVC 4ZOHB 5L6GA 4BCAA 2R8DA 2E3TA 2Y3RA 1E0YA 2WDWA 3NVZB 3W8ZA 2O3GA 2MBRA 1VDVA 4BC7A 2QKNA 2UUVA 1N5WC 3FW9A 4MLAA 5HQXA 3AMZA 1V97A 3BW7A 3D2HA 2AXRA 4JAYA 1UXYA 3KJMA 1E8HA 2PLIA 4UD8A 5FXEA 2I0KA 5AWVA 1AHZA 3TSJA 3S1DA 2EXRA 3FW7A 2W3SA 1JRPA 3D2DA 2W54A 5I1WA 5K8EA 3FWAA 3TSHA 2VFTA 3DQ0A 4BBYA 2BVFA 1RM6B 2VFVA 1QLUA 3GSYA 4O95A 5HMRA 1T3QC 1WVFA 2VFSA 2NQWA 3LLBA 1ZXIC 3JS8A 3NS1B 2BVGA 3NVWB 2Y4GA 1E8GA 4PVHA 5AE3A 1N60C 4PVJA 5HHZA 3FW8A 3NVYB 2R2ZA 1W1QA 3ETRB 5FXPA 4PYTA 5FXDA 1W1MA 1MBTA 2VFUA 1I19A 1N62C 1N63C 3S1EA 2BVHA 1SB3B 2Y3SA 3AM9A 2GQUA 4PZFA 3POPA 3D2JA 2RK5A 3HRDC 2P3HA 2P13A 4PVKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LAE A;  3EUB 3;  3I99 A;  4PWC A;  1QLT A;  3VTE A;  4BC9 A;  3B9J B;  3AN1 A;  1W1J A;  1MBB A;  3W8W A;  4DNS A;  1VAO A;  2YVS A;  1FFU C;  2W3R A;  3DED A;  3SR6 B;  1N61 C;  2GQT A;  5FXF A;  4HG0 A;  1WVE A;  3NVV B;  1FIQ B;  4PVE A;  1W1K A;  1WYG A;  5G5H B;  1W1L A;  2VFR A;  4JB1 A;  1ZR6 A;  2PLS A;  1JRO A;  1AHU A;  2VAO A;  4OAL A;  4PWB A;  1AHV A;  2OAI A;  1W1O A;  2Q85 A;  1DII A;  1E8F A;  1DZN A;  2Q4W A;  3W8X A;  3S1C A;  1W1R A;  1F0X A;  4ML8 A;  5D79 A;  2W55 A;  3NRZ B;  3TX1 A;  4XLO A;  3S1F A;  1DIQ A;  1W1S A;  1HSK A;  3C0P A;  1N5X A;  3PM9 A;  5G5G B;  5ADZ A;  2QPM A;  4EC3 A;  5AE2 A;  1FO4 A;  5AE1 A;  2P4P A;  1FFV C;  4ZOH B;  4BCA A;  2R8D A;  2E3T A;  1E0Y A;  3NVZ B;  3W8Z A;  2O3G A;  2MBR A;  1VDV A;  4BC7 A;  2QKN A;  1N5W C;  3FW9 A;  4MLA A;  5HQX A;  3AMZ A;  1V97 A;  3BW7 A;  3D2H A;  2AXR A;  4JAY A;  1UXY A;  3KJM A;  1E8H A;  2PLI A;  4UD8 A;  5FXE A;  2I0K A;  1AHZ A;  3TSJ A;  3S1D A;  2EXR A;  3FW7 A;  2W3S A;  1JRP A;  3D2D A;  2W54 A;  3FWA A;  3TSH A;  2VFT A;  3DQ0 A;  4BBY A;  2BVF A;  1RM6 B;  2VFV A;  1QLU A;  3GSY A;  4O95 A;  5HMR A;  1T3Q C;  1WVF A;  2VFS A;  2NQW A;  3LLB A;  1ZXI C;  3JS8 A;  3NS1 B;  2BVG A;  3NVW B;  1E8G A;  4PVH A;  5AE3 A;  1N60 C;  4PVJ A;  5HHZ A;  3FW8 A;  3NVY B;  2R2Z A;  1W1Q A;  3ETR B;  5FXP A;  4PYT A;  5FXD A;  1W1M A;  1MBT A;  2VFU A;  1I19 A;  1N62 C;  1N63 C;  3S1E A;  2BVH A;  1SB3 B;  3AM9 A;  2GQU A;  4PZF A;  3D2J A;  2RK5 A;  3HRD C;  2P3H A;  2P13 A;  4PVK A; 
#chains in the Genus database with same CATH topology
 3LAE A;  3EUB 3;  3I99 A;  4PWC A;  1QLT A;  3VTE A;  3PQB A;  4BC9 A;  3HSU A;  3B9J B;  5L6F A;  3AN1 A;  1W1J A;  1MBB A;  3W8W A;  4DNS A;  2UUU A;  2Y08 A;  1VAO A;  2YVS A;  1FFU C;  2W3R A;  3DED A;  3SR6 B;  1N61 C;  2GQT A;  5FXF A;  4HG0 A;  1WVE A;  3NVV B;  1FIQ B;  4PVE A;  1W1K A;  1WYG A;  3RJ8 A;  5G5H B;  1W1L A;  2VFR A;  4JB1 A;  1ZR6 A;  2PLS A;  1JRO A;  1AHU A;  2VAO A;  4OAL A;  4PWB A;  1AHV A;  2OAI A;  1W1O A;  2Q85 A;  3EJB B;  1DII A;  1E8F A;  1DZN A;  2Q4W A;  3W8X A;  3S1C A;  1W1R A;  1F0X A;  4ML8 A;  5D79 A;  2W55 A;  3NRZ B;  3EJE B;  2IPI A;  3TX1 A;  4XLO A;  3S1F A;  3RJA A;  1DIQ A;  1W1S A;  1HSK A;  3C0P A;  1N5X A;  3PM9 A;  5G5G B;  5ADZ A;  2QPM A;  4EC3 A;  5AE2 A;  1FO4 A;  5AE1 A;  2P4P A;  5I1V A;  1FFV C;  4ZOH B;  5L6G A;  4BCA A;  2R8D A;  2E3T A;  2Y3R A;  1E0Y A;  2WDW A;  3NVZ B;  3W8Z A;  2O3G A;  2MBR A;  1VDV A;  4BC7 A;  2QKN A;  2UUV A;  1N5W C;  3FW9 A;  4MLA A;  5HQX A;  3AMZ A;  3EJD B;  1V97 A;  3BW7 A;  3D2H A;  2AXR A;  4JAY A;  1UXY A;  3KJM A;  1E8H A;  2PLI A;  4UD8 A;  5FXE A;  2I0K A;  5AWV A;  1AHZ A;  3TSJ A;  3S1D A;  2EXR A;  3FW7 A;  2W3S A;  1JRP A;  3D2D A;  2W54 A;  5I1W A;  5K8E A;  3FWA A;  3TSH A;  2VFT A;  3DQ0 A;  4BBY A;  2BVF A;  1RM6 B;  2VFV A;  1QLU A;  3GSY A;  4O95 A;  5HMR A;  1T3Q C;  1WVF A;  2VFS A;  2NQW A;  3LLB A;  1ZXI C;  3JS8 A;  3NS1 B;  2BVG A;  3NVW B;  2Y4G A;  1E8G A;  4PVH A;  5AE3 A;  1N60 C;  4PVJ A;  5HHZ A;  3FW8 A;  3NVY B;  2R2Z A;  1W1Q A;  3ETR B;  5FXP A;  4PYT A;  5FXD A;  1W1M A;  1MBT A;  2VFU A;  1I19 A;  1N62 C;  1N63 C;  3S1E A;  2BVH A;  1SB3 B;  2Y3S A;  3AM9 A;  2GQU A;  4PZF A;  3POP A;  3D2J A;  2RK5 A;  3HRD C;  2P3H A;  2P13 A;  4PVK A; 
#chains in the Genus database with same CATH homology
 3LAE A;  3EUB 3;  3I99 A;  4PWC A;  1QLT A;  3VTE A;  3PQB A;  4BC9 A;  3HSU A;  3B9J B;  5L6F A;  3AN1 A;  1W1J A;  1MBB A;  3W8W A;  4DNS A;  2UUU A;  2Y08 A;  1VAO A;  2YVS A;  1FFU C;  2W3R A;  3DED A;  3SR6 B;  1N61 C;  2GQT A;  5FXF A;  4HG0 A;  1WVE A;  3NVV B;  1FIQ B;  4PVE A;  1W1K A;  1WYG A;  3RJ8 A;  5G5H B;  1W1L A;  2VFR A;  4JB1 A;  1ZR6 A;  2PLS A;  1JRO A;  1AHU A;  2VAO A;  4OAL A;  4PWB A;  1AHV A;  2OAI A;  1W1O A;  2Q85 A;  1DII A;  1E8F A;  1DZN A;  2Q4W A;  3W8X A;  3S1C A;  1W1R A;  1F0X A;  4ML8 A;  5D79 A;  2W55 A;  3NRZ B;  2IPI A;  3TX1 A;  4XLO A;  3S1F A;  3RJA A;  1DIQ A;  1W1S A;  1HSK A;  3C0P A;  1N5X A;  3PM9 A;  5G5G B;  5ADZ A;  2QPM A;  4EC3 A;  5AE2 A;  1FO4 A;  5AE1 A;  2P4P A;  5I1V A;  1FFV C;  4ZOH B;  5L6G A;  4BCA A;  2R8D A;  2E3T A;  2Y3R A;  1E0Y A;  2WDW A;  3NVZ B;  3W8Z A;  2O3G A;  2MBR A;  1VDV A;  4BC7 A;  2QKN A;  2UUV A;  1N5W C;  3FW9 A;  4MLA A;  5HQX A;  3AMZ A;  1V97 A;  3BW7 A;  3D2H A;  2AXR A;  4JAY A;  1UXY A;  3KJM A;  1E8H A;  2PLI A;  4UD8 A;  5FXE A;  2I0K A;  5AWV A;  1AHZ A;  3TSJ A;  3S1D A;  2EXR A;  3FW7 A;  2W3S A;  1JRP A;  3D2D A;  2W54 A;  5I1W A;  5K8E A;  3FWA A;  3TSH A;  2VFT A;  3DQ0 A;  4BBY A;  2BVF A;  1RM6 B;  2VFV A;  1QLU A;  3GSY A;  4O95 A;  5HMR A;  1T3Q C;  1WVF A;  2VFS A;  2NQW A;  3LLB A;  1ZXI C;  3JS8 A;  3NS1 B;  2BVG A;  3NVW B;  2Y4G A;  1E8G A;  4PVH A;  5AE3 A;  1N60 C;  4PVJ A;  5HHZ A;  3FW8 A;  3NVY B;  2R2Z A;  1W1Q A;  3ETR B;  5FXP A;  4PYT A;  5FXD A;  1W1M A;  1MBT A;  2VFU A;  1I19 A;  1N62 C;  1N63 C;  3S1E A;  2BVH A;  1SB3 B;  2Y3S A;  3AM9 A;  2GQU A;  4PZF A;  3POP A;  3D2J A;  2RK5 A;  3HRD C;  2P3H A;  2P13 A;  4PVK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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