3W8XA

The complex structure of encm with trifluorotriketide
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
461
structure length
461
Chain Sequence
QFPQLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPPS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Putative FAD-dependent oxygenase EncM
publication title Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement.
pubmed doi rcsb
source organism Streptomyces maritimus
total genus 137
structure length 461
sequence length 461
chains with identical sequence B
ec nomenclature ec 1.13.12.-:
pdb deposition date 2013-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3w8xA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3w8xA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3w8xA03
1F0XA 1N63C 2BVGA 1WVFA 1W1LA 4O95A 1AHZA 3TSHA 2YVSA 3TSJA 3AM9A 3RJ8A 2E3TA 1DZNA 2VFUA 1FFUC 2GQUA 2Y08A 3W8WA 2R8DA 1DIIA 4PWCA 2MBRA 4BCAA 3KJMA 3S1FA 5G5GB 3NS1B 2QPMA 3I99A 3BW7A 5I1WA 4ML8A 3EUB3 3DQ0A 5AE2A 1RM6B 4MLAA 1ZR6A 5HMRA 3FW8A 4UD8A 4DNSA 2Y4GA 4PVKA 2VAOA 3HSUA 1DIQA 2O3GA 2Q85A 3C0PA 2OAIA 3S1CA 4PWBA 4PZFA 4EC3A 5K8EA 2P3HA 1QLTA 3NVVB 4PVHA 1HSKA 1N5XA 5AE3A 2W3SA 1JROA 2R2ZA 1FFVC 1W1MA 1VDVA 1SB3B 3D2HA 1E8FA 3FW7A 1E8HA 5I1VA 1W1RA 1E8GA 5HQXA 2IPIA 1MBTA 2W55A 5ADZA 4BC7A 5L6GA 2RK5A 1I19A 2Q4WA 3D2DA 4BBYA 1W1JA 3W8ZA 1MBBA 2AXRA 3S1DA 2W54A 3NVWB 3NVZB 5G5HB 3JS8A 1N60C 3B9JB 4BC9A 1UXYA 3POPA 5L6FA 2EXRA 3NRZB 3PM9A 2Y3SA 1V97A 4PVEA 1N5WC 3SR6B 1N62C 2Y3RA 3DEDA 1E0YA 1W1KA 3HRDC 2VFTA 2PLIA 3AMZA 2GQTA 4JB1A 4XLOA 2VFSA 2I0KA 1W1SA 5AE1A 3RJAA 3LLBA 5FXEA 3FWAA 2P13A 2VFRA 3D2JA 1AHVA 4JAYA 3AN1A 4OALA 4PYTA 2P4PA 1T3QC 2W3RA 2WDWA 2BVFA 3LAEA 1W1QA 5D79A 1ZXIC 2PLSA 5FXDA 1W1OA 3FW9A 1WYGA 3W8XA 5FXFA 4PVJA 2NQWA 4ZOHB 1QLUA 2BVHA 1N61C 5FXPA 3NVYB 3GSYA 2VFVA 3ETRB 3S1EA 3PQBA 1FIQB 1VAOA 2QKNA 3TX1A 1WVEA 1AHUA 3VTEA 1FO4A 4HG0A 5AWVA 1JRPA 5HHZA
chains in the Genus database with same CATH superfamily
1F0XA 1N63C 2BVGA 1WVFA 1W1LA 4O95A 1AHZA 3TSHA 2YVSA 3TSJA 3AM9A 3RJ8A 2E3TA 1DZNA 2VFUA 1FFUC 2GQUA 2Y08A 3W8WA 2R8DA 1DIIA 4PWCA 2MBRA 4BCAA 3KJMA 3S1FA 5G5GB 3NS1B 2QPMA 3I99A 3BW7A 5I1WA 4ML8A 3EUB3 3DQ0A 2UUUA 5AE2A 1RM6B 2UUVA 4MLAA 1ZR6A 5HMRA 3FW8A 4UD8A 4DNSA 2Y4GA 4PVKA 2VAOA 3HSUA 1DIQA 2O3GA 2Q85A 3C0PA 2OAIA 3S1CA 4PWBA 4PZFA 4EC3A 5K8EA 3NVVB 1QLTA 2P3HA 4PVHA 1HSKA 1N5XA 5AE3A 2W3SA 1JROA 2R2ZA 1FFVC 1W1MA 1VDVA 1SB3B 3D2HA 1E8FA 3FW7A 1E8HA 5I1VA 1W1RA 1E8GA 5HQXA 2IPIA 1MBTA 2W55A 5ADZA 4BC7A 5L6GA 2RK5A 1I19A 2Q4WA 3D2DA 4BBYA 3EJDB 1W1JA 3W8ZA 3EJEB 1MBBA 2AXRA 3S1DA 2W54A 3NVWB 3NVZB 5G5HB 3JS8A 1N60C 3B9JB 4BC9A 1UXYA 3POPA 5L6FA 2EXRA 3NRZB 3PM9A 2Y3SA 1V97A 4PVEA 1N5WC 3SR6B 1N62C 2Y3RA 3DEDA 1E0YA 1W1KA 3HRDC 2VFTA 2PLIA 3AMZA 2GQTA 4JB1A 4XLOA 2VFSA 2I0KA 1W1SA 5AE1A 3RJAA 3LLBA 5FXEA 3FWAA 2P13A 2VFRA 3D2JA 1AHVA 4JAYA 3AN1A 4OALA 4PYTA 2P4PA 1T3QC 2W3RA 2WDWA 2BVFA 3LAEA 1W1QA 5D79A 1ZXIC 2PLSA 5FXDA 1W1OA 3FW9A 1WYGA 3W8XA 5FXFA 4PVJA 2NQWA 4ZOHB 1QLUA 2BVHA 1N61C 3NVYB 5FXPA 3GSYA 2VFVA 3ETRB 3S1EA 3PQBA 3EJBB 1FIQB 1VAOA 2QKNA 3TX1A 1WVEA 1AHUA 3VTEA 1FO4A 4HG0A 5AWVA 1JRPA 5HHZA
chains in the Genus database with same CATH topology
1F0XA 1N63C 2BVGA 1WVFA 1W1LA 4O95A 1AHZA 3TSHA 2YVSA 3TSJA 3AM9A 3RJ8A 2E3TA 1DZNA 2VFUA 1FFUC 2GQUA 2Y08A 3W8WA 2R8DA 1DIIA 4PWCA 2MBRA 4BCAA 3KJMA 3S1FA 5G5GB 3NS1B 2QPMA 3I99A 3BW7A 5I1WA 4ML8A 3EUB3 3DQ0A 2UUUA 5AE2A 1RM6B 2UUVA 4MLAA 1ZR6A 5HMRA 3FW8A 4UD8A 4DNSA 2Y4GA 4PVKA 2VAOA 3HSUA 1DIQA 2O3GA 2Q85A 3C0PA 2OAIA 3S1CA 4PWBA 4PZFA 4EC3A 5K8EA 2P3HA 1QLTA 3NVVB 4PVHA 1HSKA 1N5XA 5AE3A 2W3SA 1JROA 2R2ZA 1FFVC 1W1MA 1VDVA 1SB3B 3D2HA 1E8FA 3FW7A 1E8HA 5I1VA 1W1RA 1E8GA 5HQXA 2IPIA 1MBTA 2W55A 5ADZA 4BC7A 5L6GA 2RK5A 1I19A 2Q4WA 3D2DA 4BBYA 1W1JA 3W8ZA 1MBBA 2AXRA 3S1DA 2W54A 3NVWB 3NVZB 5G5HB 3JS8A 1N60C 3B9JB 4BC9A 1UXYA 3POPA 5L6FA 2EXRA 3NRZB 3PM9A 2Y3SA 1V97A 4PVEA 1N5WC 3SR6B 1N62C 2Y3RA 3DEDA 1E0YA 1W1KA 3HRDC 2VFTA 2PLIA 3AMZA 2GQTA 4JB1A 4XLOA 2VFSA 2I0KA 1W1SA 5AE1A 3RJAA 3LLBA 5FXEA 3FWAA 2P13A 2VFRA 3D2JA 1AHVA 4JAYA 3AN1A 4OALA 4PYTA 2P4PA 1T3QC 2W3RA 2WDWA 2BVFA 3LAEA 1W1QA 5D79A 1ZXIC 2PLSA 5FXDA 1W1OA 3FW9A 1WYGA 3W8XA 5FXFA 4PVJA 2NQWA 4ZOHB 1QLUA 2BVHA 1N61C 5FXPA 3NVYB 3GSYA 2VFVA 3ETRB 3S1EA 3PQBA 1FIQB 1VAOA 2QKNA 3TX1A 1WVEA 1AHUA 3VTEA 1FO4A 4HG0A 5AWVA 1JRPA 5HHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F0X A;  1N63 C;  2BVG A;  1WVF A;  1W1L A;  4O95 A;  1AHZ A;  3TSH A;  2YVS A;  3TSJ A;  3AM9 A;  3RJ8 A;  2E3T A;  1DZN A;  2VFU A;  1FFU C;  2GQU A;  2Y08 A;  3W8W A;  2R8D A;  1DII A;  4PWC A;  2MBR A;  4BCA A;  3KJM A;  3S1F A;  5G5G B;  3NS1 B;  2QPM A;  3I99 A;  3BW7 A;  5I1W A;  4ML8 A;  3EUB 3;  3DQ0 A;  5AE2 A;  1RM6 B;  4MLA A;  1ZR6 A;  5HMR A;  3FW8 A;  4UD8 A;  4DNS A;  2Y4G A;  4PVK A;  2VAO A;  3HSU A;  1DIQ A;  2O3G A;  2Q85 A;  3C0P A;  2OAI A;  3S1C A;  4PWB A;  4PZF A;  4EC3 A;  5K8E A;  2P3H A;  1QLT A;  3NVV B;  4PVH A;  1HSK A;  1N5X A;  5AE3 A;  2W3S A;  1JRO A;  2R2Z A;  1FFV C;  1W1M A;  1VDV A;  1SB3 B;  3D2H A;  1E8F A;  3FW7 A;  1E8H A;  5I1V A;  1W1R A;  1E8G A;  5HQX A;  2IPI A;  1MBT A;  2W55 A;  5ADZ A;  4BC7 A;  5L6G A;  2RK5 A;  1I19 A;  2Q4W A;  3D2D A;  4BBY A;  1W1J A;  3W8Z A;  1MBB A;  2AXR A;  3S1D A;  2W54 A;  3NVW B;  3NVZ B;  5G5H B;  3JS8 A;  1N60 C;  3B9J B;  4BC9 A;  1UXY A;  3POP A;  5L6F A;  2EXR A;  3NRZ B;  3PM9 A;  2Y3S A;  1V97 A;  4PVE A;  1N5W C;  3SR6 B;  1N62 C;  2Y3R A;  3DED A;  1E0Y A;  1W1K A;  3HRD C;  2VFT A;  2PLI A;  3AMZ A;  2GQT A;  4JB1 A;  4XLO A;  2VFS A;  2I0K A;  1W1S A;  5AE1 A;  3RJA A;  3LLB A;  5FXE A;  3FWA A;  2P13 A;  2VFR A;  3D2J A;  1AHV A;  4JAY A;  3AN1 A;  4OAL A;  4PYT A;  2P4P A;  1T3Q C;  2W3R A;  2WDW A;  2BVF A;  3LAE A;  1W1Q A;  5D79 A;  1ZXI C;  2PLS A;  5FXD A;  1W1O A;  3FW9 A;  1WYG A;  3W8X A;  5FXF A;  4PVJ A;  2NQW A;  4ZOH B;  1QLU A;  2BVH A;  1N61 C;  5FXP A;  3NVY B;  3GSY A;  2VFV A;  3ETR B;  3S1E A;  3PQB A;  1FIQ B;  1VAO A;  2QKN A;  3TX1 A;  1WVE A;  1AHU A;  3VTE A;  1FO4 A;  4HG0 A;  5AWV A;  1JRP A;  5HHZ A; 
#chains in the Genus database with same CATH topology
 1F0X A;  1N63 C;  2BVG A;  1WVF A;  1W1L A;  4O95 A;  1AHZ A;  3TSH A;  2YVS A;  3TSJ A;  3AM9 A;  3RJ8 A;  2E3T A;  1DZN A;  2VFU A;  1FFU C;  2GQU A;  2Y08 A;  3W8W A;  2R8D A;  1DII A;  4PWC A;  2MBR A;  4BCA A;  3KJM A;  3S1F A;  5G5G B;  3NS1 B;  2QPM A;  3I99 A;  3BW7 A;  5I1W A;  4ML8 A;  3EUB 3;  3DQ0 A;  2UUU A;  5AE2 A;  1RM6 B;  2UUV A;  4MLA A;  1ZR6 A;  5HMR A;  3FW8 A;  4UD8 A;  4DNS A;  2Y4G A;  4PVK A;  2VAO A;  3HSU A;  1DIQ A;  2O3G A;  2Q85 A;  3C0P A;  2OAI A;  3S1C A;  4PWB A;  4PZF A;  4EC3 A;  5K8E A;  3NVV B;  1QLT A;  2P3H A;  4PVH A;  1HSK A;  1N5X A;  5AE3 A;  2W3S A;  1JRO A;  2R2Z A;  1FFV C;  1W1M A;  1VDV A;  1SB3 B;  3D2H A;  1E8F A;  3FW7 A;  1E8H A;  5I1V A;  1W1R A;  1E8G A;  5HQX A;  2IPI A;  1MBT A;  2W55 A;  5ADZ A;  4BC7 A;  5L6G A;  2RK5 A;  1I19 A;  2Q4W A;  3D2D A;  4BBY A;  3EJD B;  1W1J A;  3W8Z A;  3EJE B;  1MBB A;  2AXR A;  3S1D A;  2W54 A;  3NVW B;  3NVZ B;  5G5H B;  3JS8 A;  1N60 C;  3B9J B;  4BC9 A;  1UXY A;  3POP A;  5L6F A;  2EXR A;  3NRZ B;  3PM9 A;  2Y3S A;  1V97 A;  4PVE A;  1N5W C;  3SR6 B;  1N62 C;  2Y3R A;  3DED A;  1E0Y A;  1W1K A;  3HRD C;  2VFT A;  2PLI A;  3AMZ A;  2GQT A;  4JB1 A;  4XLO A;  2VFS A;  2I0K A;  1W1S A;  5AE1 A;  3RJA A;  3LLB A;  5FXE A;  3FWA A;  2P13 A;  2VFR A;  3D2J A;  1AHV A;  4JAY A;  3AN1 A;  4OAL A;  4PYT A;  2P4P A;  1T3Q C;  2W3R A;  2WDW A;  2BVF A;  3LAE A;  1W1Q A;  5D79 A;  1ZXI C;  2PLS A;  5FXD A;  1W1O A;  3FW9 A;  1WYG A;  3W8X A;  5FXF A;  4PVJ A;  2NQW A;  4ZOH B;  1QLU A;  2BVH A;  1N61 C;  3NVY B;  5FXP A;  3GSY A;  2VFV A;  3ETR B;  3S1E A;  3PQB A;  3EJB B;  1FIQ B;  1VAO A;  2QKN A;  3TX1 A;  1WVE A;  1AHU A;  3VTE A;  1FO4 A;  4HG0 A;  5AWV A;  1JRP A;  5HHZ A; 
#chains in the Genus database with same CATH homology
 1F0X A;  1N63 C;  2BVG A;  1WVF A;  1W1L A;  4O95 A;  1AHZ A;  3TSH A;  2YVS A;  3TSJ A;  3AM9 A;  3RJ8 A;  2E3T A;  1DZN A;  2VFU A;  1FFU C;  2GQU A;  2Y08 A;  3W8W A;  2R8D A;  1DII A;  4PWC A;  2MBR A;  4BCA A;  3KJM A;  3S1F A;  5G5G B;  3NS1 B;  2QPM A;  3I99 A;  3BW7 A;  5I1W A;  4ML8 A;  3EUB 3;  3DQ0 A;  2UUU A;  5AE2 A;  1RM6 B;  2UUV A;  4MLA A;  1ZR6 A;  5HMR A;  3FW8 A;  4UD8 A;  4DNS A;  2Y4G A;  4PVK A;  2VAO A;  3HSU A;  1DIQ A;  2O3G A;  2Q85 A;  3C0P A;  2OAI A;  3S1C A;  4PWB A;  4PZF A;  4EC3 A;  5K8E A;  2P3H A;  1QLT A;  3NVV B;  4PVH A;  1HSK A;  1N5X A;  5AE3 A;  2W3S A;  1JRO A;  2R2Z A;  1FFV C;  1W1M A;  1VDV A;  1SB3 B;  3D2H A;  1E8F A;  3FW7 A;  1E8H A;  5I1V A;  1W1R A;  1E8G A;  5HQX A;  2IPI A;  1MBT A;  2W55 A;  5ADZ A;  4BC7 A;  5L6G A;  2RK5 A;  1I19 A;  2Q4W A;  3D2D A;  4BBY A;  1W1J A;  3W8Z A;  1MBB A;  2AXR A;  3S1D A;  2W54 A;  3NVW B;  3NVZ B;  5G5H B;  3JS8 A;  1N60 C;  3B9J B;  4BC9 A;  1UXY A;  3POP A;  5L6F A;  2EXR A;  3NRZ B;  3PM9 A;  2Y3S A;  1V97 A;  4PVE A;  1N5W C;  3SR6 B;  1N62 C;  2Y3R A;  3DED A;  1E0Y A;  1W1K A;  3HRD C;  2VFT A;  2PLI A;  3AMZ A;  2GQT A;  4JB1 A;  4XLO A;  2VFS A;  2I0K A;  1W1S A;  5AE1 A;  3RJA A;  3LLB A;  5FXE A;  3FWA A;  2P13 A;  2VFR A;  3D2J A;  1AHV A;  4JAY A;  3AN1 A;  4OAL A;  4PYT A;  2P4P A;  1T3Q C;  2W3R A;  2WDW A;  2BVF A;  3LAE A;  1W1Q A;  5D79 A;  1ZXI C;  2PLS A;  5FXD A;  1W1O A;  3FW9 A;  1WYG A;  3W8X A;  5FXF A;  4PVJ A;  2NQW A;  4ZOH B;  1QLU A;  2BVH A;  1N61 C;  5FXP A;  3NVY B;  3GSY A;  2VFV A;  3ETR B;  3S1E A;  3PQB A;  1FIQ B;  1VAO A;  2QKN A;  3TX1 A;  1WVE A;  1AHU A;  3VTE A;  1FO4 A;  4HG0 A;  5AWV A;  1JRP A;  5HHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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