1QLUA

Structure of the h422a mutant vanillyl-alcohol oxidase in complex with isoeugenol
Total Genus 184
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 184
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qluA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qluA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qluA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qluA03
1FFVC 3TSJA 2GQTA 3JS8A 1QLUA 1N61C 5HMRA 1WVFA 1E8GA 1DIQA 2EXRA 5D79A 2P4PA 3D2HA 3GSYA 3B9JB 3C0PA 4JB1A 5FXPA 1VAOA 1WYGA 1N60C 2GQUA 1W1KA 1N5XA 2VFVA 5AE1A 2PLSA 2QPMA 3BW7A 4O95A 5FXEA 3D2DA 2PLIA 4PVJA 3DEDA 3LLBA 3NVWB 2BVFA 1E0YA 4EC3A 1FO4A 3I99A 3NRZB 1W1SA 3S1DA 1RM6B 5FXDA 3FWAA 2P3HA 1T3QC 1FFUC 1MBBA 1F0XA 4PWBA 1AHUA 2P13A 1SB3B 5G5HB 1DIIA 1FIQB 2E3TA 4PWCA 1N63C 2R2ZA 5HQXA 4BBYA 2OAIA 3NVVB 4MLAA 2MBRA 3W8WA 4DNSA 4HG0A 4PVKA 2Q85A 2RK5A 2O3GA 4ML8A 2VFTA 3AM9A 4UD8A 3W8ZA 1V97A 2VAOA 1W1OA 1N5WC 4BCAA 1W1JA 1W1LA 1AHVA 1VDVA 2BVGA 5AE3A 3HRDC 1E8HA 3AMZA 3W8XA 5AE2A 2W3RA 3FW9A 1JROA 4BC7A 2Q4WA 1W1QA 3NS1B 4OALA 3PM9A 2AXRA 2W3SA 3AN1A 4PZFA 5G5GB 1MBTA 1I19A 1W1RA 1DZNA 3ETRB 3EUB3 2VFUA 2BVHA 4XLOA 1AHZA 2NQWA 1HSKA 3KJMA 4PVEA 3DQ0A 4PYTA 1N62C 2I0KA 2YVSA 3VTEA 5ADZA 4JAYA 1QLTA 1E8FA 3NVZB 2W54A 2R8DA 3S1FA 3S1EA 1ZXIC 4ZOHB 4BC9A 3D2JA 1JRPA 3NVYB 3TX1A 1UXYA 3S1CA 1ZR6A 1WVEA 2VFSA 3TSHA 2W55A 4PVHA 3SR6B 3FW8A 2VFRA 3FW7A 5HHZA 1W1MA 2QKNA 3LAEA 5FXFA
chains in the Genus database with same CATH superfamily
1FFVC 3TSJA 2GQTA 3JS8A 1QLUA 1N61C 5HMRA 2Y4GA 1WVFA 1E8GA 1DIQA 2EXRA 5D79A 2P4PA 3D2HA 3GSYA 3B9JB 3C0PA 3HSUA 4JB1A 5FXPA 1VAOA 1WYGA 1N60C 2GQUA 3RJAA 1W1KA 1N5XA 2VFVA 5AE1A 2PLSA 2QPMA 3BW7A 5I1VA 4O95A 5FXEA 3D2DA 2PLIA 4PVJA 2IPIA 3DEDA 3NVWB 3LLBA 5AWVA 3RJ8A 2BVFA 1E0YA 4EC3A 1FO4A 3I99A 3NRZB 1W1SA 3S1DA 1RM6B 5FXDA 3EJEB 3FWAA 2P3HA 1T3QC 1FFUC 1MBBA 1F0XA 4PWBA 1AHUA 2P13A 1SB3B 5L6GA 5G5HB 1DIIA 1FIQB 2E3TA 4PWCA 1N63C 2R2ZA 5HQXA 2WDWA 4BBYA 2OAIA 3NVVB 4MLAA 2MBRA 3W8WA 4DNSA 4HG0A 4PVKA 2Q85A 2RK5A 2O3GA 5K8EA 4ML8A 2VFTA 3AM9A 4UD8A 3W8ZA 3PQBA 1V97A 2VAOA 1W1OA 1N5WC 4BCAA 2UUVA 1W1JA 1W1LA 1AHVA 1VDVA 5I1WA 2BVGA 5AE3A 3HRDC 1E8HA 3AMZA 3W8XA 5AE2A 2W3RA 3FW9A 1JROA 4BC7A 2Q4WA 1W1QA 3NS1B 4OALA 3PM9A 2AXRA 2W3SA 3AN1A 4PZFA 5G5GB 1MBTA 2UUUA 1I19A 1W1RA 1DZNA 3ETRB 3EUB3 2VFUA 2BVHA 4XLOA 5L6FA 1AHZA 2NQWA 1HSKA 3KJMA 4PVEA 3DQ0A 4PYTA 1N62C 2I0KA 2YVSA 3VTEA 5ADZA 4JAYA 1QLTA 3EJDB 3EJBB 1E8FA 3NVZB 2W54A 2R8DA 3S1FA 3S1EA 1ZXIC 4ZOHB 4BC9A 3D2JA 1JRPA 3POPA 3NVYB 3TX1A 1UXYA 3S1CA 1ZR6A 1WVEA 2VFSA 2Y3RA 3TSHA 2Y3SA 2W55A 4PVHA 3SR6B 3FW8A 2VFRA 3FW7A 5HHZA 1W1MA 2QKNA 2Y08A 3LAEA 5FXFA
chains in the Genus database with same CATH topology
1FFVC 3TSJA 2GQTA 3JS8A 1QLUA 1N61C 5HMRA 2Y4GA 1WVFA 1E8GA 1DIQA 2EXRA 5D79A 2P4PA 3D2HA 3GSYA 3B9JB 3C0PA 3HSUA 4JB1A 5FXPA 1VAOA 1WYGA 1N60C 2GQUA 3RJAA 1W1KA 1N5XA 2VFVA 5AE1A 2PLSA 2QPMA 3BW7A 5I1VA 4O95A 5FXEA 3D2DA 2PLIA 4PVJA 2IPIA 3DEDA 3LLBA 3NVWB 5AWVA 3RJ8A 2BVFA 1E0YA 4EC3A 1FO4A 3I99A 3NRZB 1W1SA 3S1DA 1RM6B 5FXDA 3FWAA 2P3HA 1T3QC 1FFUC 1MBBA 1F0XA 4PWBA 1AHUA 2P13A 1SB3B 5L6GA 5G5HB 1DIIA 1FIQB 2E3TA 4PWCA 1N63C 2R2ZA 5HQXA 2WDWA 4BBYA 2OAIA 3NVVB 4MLAA 2MBRA 3W8WA 4DNSA 4HG0A 4PVKA 2Q85A 2RK5A 2O3GA 5K8EA 4ML8A 2VFTA 3AM9A 4UD8A 3W8ZA 3PQBA 1V97A 2VAOA 1W1OA 1N5WC 4BCAA 2UUVA 1W1JA 1W1LA 1AHVA 1VDVA 5I1WA 2BVGA 5AE3A 3HRDC 1E8HA 3AMZA 3W8XA 5AE2A 2W3RA 3FW9A 1JROA 4BC7A 2Q4WA 1W1QA 3NS1B 4OALA 3PM9A 2AXRA 2W3SA 3AN1A 4PZFA 5G5GB 1MBTA 2UUUA 1I19A 1W1RA 1DZNA 3ETRB 3EUB3 2VFUA 2BVHA 4XLOA 5L6FA 1AHZA 2NQWA 1HSKA 3KJMA 4PVEA 3DQ0A 4PYTA 1N62C 2I0KA 2YVSA 3VTEA 5ADZA 4JAYA 1QLTA 1E8FA 3NVZB 2W54A 2R8DA 3S1FA 3S1EA 1ZXIC 4ZOHB 4BC9A 3D2JA 1JRPA 3POPA 3NVYB 3TX1A 1UXYA 3S1CA 1ZR6A 1WVEA 2VFSA 2Y3RA 3TSHA 2Y3SA 2W55A 4PVHA 3SR6B 3FW8A 2VFRA 3FW7A 5HHZA 1W1MA 2QKNA 2Y08A 3LAEA 5FXFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FFV C;  3TSJ A;  2GQT A;  3JS8 A;  1QLU A;  1N61 C;  5HMR A;  1WVF A;  1E8G A;  1DIQ A;  2EXR A;  5D79 A;  2P4P A;  3D2H A;  3GSY A;  3B9J B;  3C0P A;  4JB1 A;  5FXP A;  1VAO A;  1WYG A;  1N60 C;  2GQU A;  1W1K A;  1N5X A;  2VFV A;  5AE1 A;  2PLS A;  2QPM A;  3BW7 A;  4O95 A;  5FXE A;  3D2D A;  2PLI A;  4PVJ A;  3DED A;  3LLB A;  3NVW B;  2BVF A;  1E0Y A;  4EC3 A;  1FO4 A;  3I99 A;  3NRZ B;  1W1S A;  3S1D A;  1RM6 B;  5FXD A;  3FWA A;  2P3H A;  1T3Q C;  1FFU C;  1MBB A;  1F0X A;  4PWB A;  1AHU A;  2P13 A;  1SB3 B;  5G5H B;  1DII A;  1FIQ B;  2E3T A;  4PWC A;  1N63 C;  2R2Z A;  5HQX A;  4BBY A;  2OAI A;  3NVV B;  4MLA A;  2MBR A;  3W8W A;  4DNS A;  4HG0 A;  4PVK A;  2Q85 A;  2RK5 A;  2O3G A;  4ML8 A;  2VFT A;  3AM9 A;  4UD8 A;  3W8Z A;  1V97 A;  2VAO A;  1W1O A;  1N5W C;  4BCA A;  1W1J A;  1W1L A;  1AHV A;  1VDV A;  2BVG A;  5AE3 A;  3HRD C;  1E8H A;  3AMZ A;  3W8X A;  5AE2 A;  2W3R A;  3FW9 A;  1JRO A;  4BC7 A;  2Q4W A;  1W1Q A;  3NS1 B;  4OAL A;  3PM9 A;  2AXR A;  2W3S A;  3AN1 A;  4PZF A;  5G5G B;  1MBT A;  1I19 A;  1W1R A;  1DZN A;  3ETR B;  3EUB 3;  2VFU A;  2BVH A;  4XLO A;  1AHZ A;  2NQW A;  1HSK A;  3KJM A;  4PVE A;  3DQ0 A;  4PYT A;  1N62 C;  2I0K A;  2YVS A;  3VTE A;  5ADZ A;  4JAY A;  1QLT A;  1E8F A;  3NVZ B;  2W54 A;  2R8D A;  3S1F A;  3S1E A;  1ZXI C;  4ZOH B;  4BC9 A;  3D2J A;  1JRP A;  3NVY B;  3TX1 A;  1UXY A;  3S1C A;  1ZR6 A;  1WVE A;  2VFS A;  3TSH A;  2W55 A;  4PVH A;  3SR6 B;  3FW8 A;  2VFR A;  3FW7 A;  5HHZ A;  1W1M A;  2QKN A;  3LAE A;  5FXF A; 
#chains in the Genus database with same CATH topology
 1FFV C;  3TSJ A;  2GQT A;  3JS8 A;  1QLU A;  1N61 C;  5HMR A;  2Y4G A;  1WVF A;  1E8G A;  1DIQ A;  2EXR A;  5D79 A;  2P4P A;  3D2H A;  3GSY A;  3B9J B;  3C0P A;  3HSU A;  4JB1 A;  5FXP A;  1VAO A;  1WYG A;  1N60 C;  2GQU A;  3RJA A;  1W1K A;  1N5X A;  2VFV A;  5AE1 A;  2PLS A;  2QPM A;  3BW7 A;  5I1V A;  4O95 A;  5FXE A;  3D2D A;  2PLI A;  4PVJ A;  2IPI A;  3DED A;  3NVW B;  3LLB A;  5AWV A;  3RJ8 A;  2BVF A;  1E0Y A;  4EC3 A;  1FO4 A;  3I99 A;  3NRZ B;  1W1S A;  3S1D A;  1RM6 B;  5FXD A;  3EJE B;  3FWA A;  2P3H A;  1T3Q C;  1FFU C;  1MBB A;  1F0X A;  4PWB A;  1AHU A;  2P13 A;  1SB3 B;  5L6G A;  5G5H B;  1DII A;  1FIQ B;  2E3T A;  4PWC A;  1N63 C;  2R2Z A;  5HQX A;  2WDW A;  4BBY A;  2OAI A;  3NVV B;  4MLA A;  2MBR A;  3W8W A;  4DNS A;  4HG0 A;  4PVK A;  2Q85 A;  2RK5 A;  2O3G A;  5K8E A;  4ML8 A;  2VFT A;  3AM9 A;  4UD8 A;  3W8Z A;  3PQB A;  1V97 A;  2VAO A;  1W1O A;  1N5W C;  4BCA A;  2UUV A;  1W1J A;  1W1L A;  1AHV A;  1VDV A;  5I1W A;  2BVG A;  5AE3 A;  3HRD C;  1E8H A;  3AMZ A;  3W8X A;  5AE2 A;  2W3R A;  3FW9 A;  1JRO A;  4BC7 A;  2Q4W A;  1W1Q A;  3NS1 B;  4OAL A;  3PM9 A;  2AXR A;  2W3S A;  3AN1 A;  4PZF A;  5G5G B;  1MBT A;  2UUU A;  1I19 A;  1W1R A;  1DZN A;  3ETR B;  3EUB 3;  2VFU A;  2BVH A;  4XLO A;  5L6F A;  1AHZ A;  2NQW A;  1HSK A;  3KJM A;  4PVE A;  3DQ0 A;  4PYT A;  1N62 C;  2I0K A;  2YVS A;  3VTE A;  5ADZ A;  4JAY A;  1QLT A;  3EJD B;  3EJB B;  1E8F A;  3NVZ B;  2W54 A;  2R8D A;  3S1F A;  3S1E A;  1ZXI C;  4ZOH B;  4BC9 A;  3D2J A;  1JRP A;  3POP A;  3NVY B;  3TX1 A;  1UXY A;  3S1C A;  1ZR6 A;  1WVE A;  2VFS A;  2Y3R A;  3TSH A;  2Y3S A;  2W55 A;  4PVH A;  3SR6 B;  3FW8 A;  2VFR A;  3FW7 A;  5HHZ A;  1W1M A;  2QKN A;  2Y08 A;  3LAE A;  5FXF A; 
#chains in the Genus database with same CATH homology
 1FFV C;  3TSJ A;  2GQT A;  3JS8 A;  1QLU A;  1N61 C;  5HMR A;  2Y4G A;  1WVF A;  1E8G A;  1DIQ A;  2EXR A;  5D79 A;  2P4P A;  3D2H A;  3GSY A;  3B9J B;  3C0P A;  3HSU A;  4JB1 A;  5FXP A;  1VAO A;  1WYG A;  1N60 C;  2GQU A;  3RJA A;  1W1K A;  1N5X A;  2VFV A;  5AE1 A;  2PLS A;  2QPM A;  3BW7 A;  5I1V A;  4O95 A;  5FXE A;  3D2D A;  2PLI A;  4PVJ A;  2IPI A;  3DED A;  3LLB A;  3NVW B;  5AWV A;  3RJ8 A;  2BVF A;  1E0Y A;  4EC3 A;  1FO4 A;  3I99 A;  3NRZ B;  1W1S A;  3S1D A;  1RM6 B;  5FXD A;  3FWA A;  2P3H A;  1T3Q C;  1FFU C;  1MBB A;  1F0X A;  4PWB A;  1AHU A;  2P13 A;  1SB3 B;  5L6G A;  5G5H B;  1DII A;  1FIQ B;  2E3T A;  4PWC A;  1N63 C;  2R2Z A;  5HQX A;  2WDW A;  4BBY A;  2OAI A;  3NVV B;  4MLA A;  2MBR A;  3W8W A;  4DNS A;  4HG0 A;  4PVK A;  2Q85 A;  2RK5 A;  2O3G A;  5K8E A;  4ML8 A;  2VFT A;  3AM9 A;  4UD8 A;  3W8Z A;  3PQB A;  1V97 A;  2VAO A;  1W1O A;  1N5W C;  4BCA A;  2UUV A;  1W1J A;  1W1L A;  1AHV A;  1VDV A;  5I1W A;  2BVG A;  5AE3 A;  3HRD C;  1E8H A;  3AMZ A;  3W8X A;  5AE2 A;  2W3R A;  3FW9 A;  1JRO A;  4BC7 A;  2Q4W A;  1W1Q A;  3NS1 B;  4OAL A;  3PM9 A;  2AXR A;  2W3S A;  3AN1 A;  4PZF A;  5G5G B;  1MBT A;  2UUU A;  1I19 A;  1W1R A;  1DZN A;  3ETR B;  3EUB 3;  2VFU A;  2BVH A;  4XLO A;  5L6F A;  1AHZ A;  2NQW A;  1HSK A;  3KJM A;  4PVE A;  3DQ0 A;  4PYT A;  1N62 C;  2I0K A;  2YVS A;  3VTE A;  5ADZ A;  4JAY A;  1QLT A;  1E8F A;  3NVZ B;  2W54 A;  2R8D A;  3S1F A;  3S1E A;  1ZXI C;  4ZOH B;  4BC9 A;  3D2J A;  1JRP A;  3POP A;  3NVY B;  3TX1 A;  1UXY A;  3S1C A;  1ZR6 A;  1WVE A;  2VFS A;  2Y3R A;  3TSH A;  2Y3S A;  2W55 A;  4PVH A;  3SR6 B;  3FW8 A;  2VFR A;  3FW7 A;  5HHZ A;  1W1M A;  2QKN A;  2Y08 A;  3LAE A;  5FXF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...