1QLUA

Structure of the h422a mutant vanillyl-alcohol oxidase in complex with isoeugenol
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
total genus 184
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qluA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qluA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qluA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qluA03
2GQUA 2W3SA 3D2DA 3NVYB 2AXRA 2YVSA 3EUB3 5ADZA 1N63C 1W1OA 4PZFA 1W1SA 2OAIA 2W3RA 2VFSA 3AM9A 3I99A 1W1QA 2VFRA 5HQXA 2P3HA 1FIQB 2I0KA 1AHUA 5AE3A 1JROA 4BC7A 5G5GB 1T3QC 4PVHA 1N62C 2RK5A 3NVWB 3TX1A 3AN1A 5G5HB 4XLOA 4PVEA 3S1CA 2O3GA 1DIIA 3LAEA 2QKNA 2P13A 5HMRA 5AE2A 4BBYA 2PLIA 2VAOA 5FXPA 1ZR6A 1DZNA 1AHVA 3KJMA 1W1LA 4MLAA 1W1JA 1QLUA 3LLBA 1F0XA 2R2ZA 2EXRA 2Q85A 3W8ZA 1WVEA 3NVZB 3JS8A 5FXEA 3NS1B 3NRZB 4JAYA 1DIQA 3D2JA 1UXYA 4PWBA 3S1DA 1MBTA 1MBBA 1FO4A 3GSYA 1V97A 1HSKA 2QPMA 4O95A 4PVKA 4JB1A 3SR6B 2BVHA 2VFTA 3D2HA 3FWAA 3FW9A 1RM6B 3DEDA 1JRPA 1FFUC 4UD8A 1E8GA 3AMZA 1QLTA 4EC3A 2VFUA 4PWCA 1N5XA 3ETRB 4PVJA 2W54A 4OALA 1W1KA 3W8WA 2VFVA 3W8XA 4BC9A 4PYTA 3HRDC 3B9JB 2Q4WA 1FFVC 5FXFA 2GQTA 4HG0A 4ML8A 1SB3B 1E8FA 1VAOA 3TSHA 3PM9A 1E8HA 1W1RA 3FW7A 3NVVB 5AE1A 5D79A 4ZOHB 2R8DA 3FW8A 5FXDA 1WVFA 2W55A 1VDVA 3S1FA 1N5WC 3DQ0A 1N61C 3TSJA 2BVGA 2E3TA 1E0YA 4DNSA 3VTEA 4BCAA 1W1MA 1I19A 2BVFA 1AHZA 2NQWA 3BW7A 3C0PA 1ZXIC 2MBRA 1WYGA 2P4PA 5HHZA 3S1EA 1N60C 2PLSA
chains in the Genus database with same CATH superfamily
2GQUA 2W3SA 3D2DA 3NVYB 2AXRA 2YVSA 3EUB3 5ADZA 1N63C 1W1OA 4PZFA 1W1SA 2OAIA 2W3RA 2VFSA 3AM9A 3I99A 1W1QA 2VFRA 5AWVA 5HQXA 2P3HA 1FIQB 2I0KA 1AHUA 5AE3A 1JROA 4BC7A 5G5GB 1T3QC 2Y3RA 4PVHA 1N62C 3HSUA 2Y3SA 2RK5A 3NVWB 3TX1A 3RJ8A 3AN1A 5G5HB 4XLOA 4PVEA 3S1CA 2O3GA 1DIIA 3LAEA 2QKNA 2P13A 5HMRA 5AE2A 4BBYA 2PLIA 2UUUA 2VAOA 5FXPA 2UUVA 1ZR6A 3PQBA 1DZNA 1AHVA 3KJMA 1W1LA 4MLAA 1W1JA 1QLUA 3LLBA 1F0XA 3EJEB 2R2ZA 2EXRA 2Q85A 3EJBB 3W8ZA 1WVEA 3NVZB 3JS8A 5FXEA 3NS1B 3NRZB 4JAYA 1DIQA 3D2JA 5I1VA 3POPA 1UXYA 4PWBA 3S1DA 1MBTA 1MBBA 1FO4A 3GSYA 1V97A 3EJDB 1HSKA 2IPIA 2QPMA 4O95A 4PVKA 4JB1A 3SR6B 2BVHA 2VFTA 3D2HA 3FWAA 3FW9A 1RM6B 5L6GA 3DEDA 1JRPA 2WDWA 5K8EA 1FFUC 4UD8A 1E8GA 3AMZA 1QLTA 4EC3A 2VFUA 4PWCA 1N5XA 3ETRB 4PVJA 2W54A 2Y08A 4OALA 1W1KA 3W8WA 2VFVA 3W8XA 4BC9A 4PYTA 3HRDC 3B9JB 2Q4WA 1FFVC 3RJAA 5FXFA 2GQTA 4HG0A 4ML8A 1SB3B 1E8FA 1VAOA 3TSHA 3PM9A 1E8HA 1W1RA 3FW7A 3NVVB 5AE1A 5D79A 4ZOHB 2R8DA 3FW8A 5FXDA 1WVFA 2W55A 1VDVA 2Y4GA 3S1FA 1N5WC 3DQ0A 1N61C 3TSJA 2BVGA 2E3TA 1E0YA 4DNSA 3VTEA 4BCAA 1W1MA 5L6FA 1I19A 2BVFA 1AHZA 2NQWA 3BW7A 3C0PA 1ZXIC 2MBRA 1WYGA 2P4PA 5I1WA 5HHZA 3S1EA 1N60C 2PLSA
chains in the Genus database with same CATH topology
2GQUA 2W3SA 3D2DA 3NVYB 2AXRA 2YVSA 3EUB3 5ADZA 1N63C 1W1OA 4PZFA 1W1SA 2OAIA 2W3RA 2VFSA 3AM9A 3I99A 1W1QA 2VFRA 5AWVA 5HQXA 2P3HA 1FIQB 2I0KA 1AHUA 5AE3A 1JROA 4BC7A 5G5GB 1T3QC 2Y3RA 4PVHA 1N62C 3HSUA 2Y3SA 2RK5A 3NVWB 3TX1A 3RJ8A 3AN1A 5G5HB 4XLOA 4PVEA 3S1CA 2O3GA 1DIIA 3LAEA 2QKNA 2P13A 5HMRA 5AE2A 4BBYA 2PLIA 2UUUA 2VAOA 5FXPA 2UUVA 1ZR6A 3PQBA 1DZNA 1AHVA 3KJMA 1W1LA 4MLAA 1W1JA 1QLUA 3LLBA 1F0XA 2R2ZA 2EXRA 2Q85A 3W8ZA 1WVEA 3NVZB 3JS8A 5FXEA 3NS1B 3NRZB 4JAYA 1DIQA 3D2JA 5I1VA 3POPA 1UXYA 4PWBA 3S1DA 1MBTA 1MBBA 1FO4A 3GSYA 1V97A 1HSKA 2IPIA 2QPMA 4O95A 4PVKA 4JB1A 3SR6B 2BVHA 2VFTA 3D2HA 3FWAA 3FW9A 1RM6B 5L6GA 3DEDA 1JRPA 2WDWA 5K8EA 1FFUC 4UD8A 1E8GA 3AMZA 1QLTA 4EC3A 2VFUA 4PWCA 1N5XA 3ETRB 4PVJA 2W54A 2Y08A 4OALA 1W1KA 3W8WA 2VFVA 3W8XA 4BC9A 4PYTA 3HRDC 3B9JB 2Q4WA 1FFVC 3RJAA 5FXFA 2GQTA 4HG0A 4ML8A 1SB3B 1E8FA 1VAOA 3TSHA 3PM9A 1E8HA 1W1RA 3FW7A 3NVVB 5AE1A 5D79A 4ZOHB 2R8DA 3FW8A 5FXDA 1WVFA 2W55A 1VDVA 2Y4GA 3S1FA 1N5WC 3DQ0A 1N61C 3TSJA 2BVGA 2E3TA 1E0YA 4DNSA 3VTEA 4BCAA 1W1MA 5L6FA 1I19A 2BVFA 1AHZA 2NQWA 3BW7A 3C0PA 1ZXIC 2MBRA 1WYGA 2P4PA 5I1WA 5HHZA 3S1EA 1N60C 2PLSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GQU A;  2W3S A;  3D2D A;  3NVY B;  2AXR A;  2YVS A;  3EUB 3;  5ADZ A;  1N63 C;  1W1O A;  4PZF A;  1W1S A;  2OAI A;  2W3R A;  2VFS A;  3AM9 A;  3I99 A;  1W1Q A;  2VFR A;  5HQX A;  2P3H A;  1FIQ B;  2I0K A;  1AHU A;  5AE3 A;  1JRO A;  4BC7 A;  5G5G B;  1T3Q C;  4PVH A;  1N62 C;  2RK5 A;  3NVW B;  3TX1 A;  3AN1 A;  5G5H B;  4XLO A;  4PVE A;  3S1C A;  2O3G A;  1DII A;  3LAE A;  2QKN A;  2P13 A;  5HMR A;  5AE2 A;  4BBY A;  2PLI A;  2VAO A;  5FXP A;  1ZR6 A;  1DZN A;  1AHV A;  3KJM A;  1W1L A;  4MLA A;  1W1J A;  1QLU A;  3LLB A;  1F0X A;  2R2Z A;  2EXR A;  2Q85 A;  3W8Z A;  1WVE A;  3NVZ B;  3JS8 A;  5FXE A;  3NS1 B;  3NRZ B;  4JAY A;  1DIQ A;  3D2J A;  1UXY A;  4PWB A;  3S1D A;  1MBT A;  1MBB A;  1FO4 A;  3GSY A;  1V97 A;  1HSK A;  2QPM A;  4O95 A;  4PVK A;  4JB1 A;  3SR6 B;  2BVH A;  2VFT A;  3D2H A;  3FWA A;  3FW9 A;  1RM6 B;  3DED A;  1JRP A;  1FFU C;  4UD8 A;  1E8G A;  3AMZ A;  1QLT A;  4EC3 A;  2VFU A;  4PWC A;  1N5X A;  3ETR B;  4PVJ A;  2W54 A;  4OAL A;  1W1K A;  3W8W A;  2VFV A;  3W8X A;  4BC9 A;  4PYT A;  3HRD C;  3B9J B;  2Q4W A;  1FFV C;  5FXF A;  2GQT A;  4HG0 A;  4ML8 A;  1SB3 B;  1E8F A;  1VAO A;  3TSH A;  3PM9 A;  1E8H A;  1W1R A;  3FW7 A;  3NVV B;  5AE1 A;  5D79 A;  4ZOH B;  2R8D A;  3FW8 A;  5FXD A;  1WVF A;  2W55 A;  1VDV A;  3S1F A;  1N5W C;  3DQ0 A;  1N61 C;  3TSJ A;  2BVG A;  2E3T A;  1E0Y A;  4DNS A;  3VTE A;  4BCA A;  1W1M A;  1I19 A;  2BVF A;  1AHZ A;  2NQW A;  3BW7 A;  3C0P A;  1ZXI C;  2MBR A;  1WYG A;  2P4P A;  5HHZ A;  3S1E A;  1N60 C;  2PLS A; 
#chains in the Genus database with same CATH topology
 2GQU A;  2W3S A;  3D2D A;  3NVY B;  2AXR A;  2YVS A;  3EUB 3;  5ADZ A;  1N63 C;  1W1O A;  4PZF A;  1W1S A;  2OAI A;  2W3R A;  2VFS A;  3AM9 A;  3I99 A;  1W1Q A;  2VFR A;  5AWV A;  5HQX A;  2P3H A;  1FIQ B;  2I0K A;  1AHU A;  5AE3 A;  1JRO A;  4BC7 A;  5G5G B;  1T3Q C;  2Y3R A;  4PVH A;  1N62 C;  3HSU A;  2Y3S A;  2RK5 A;  3NVW B;  3TX1 A;  3RJ8 A;  3AN1 A;  5G5H B;  4XLO A;  4PVE A;  3S1C A;  2O3G A;  1DII A;  3LAE A;  2QKN A;  2P13 A;  5HMR A;  5AE2 A;  4BBY A;  2PLI A;  2UUU A;  2VAO A;  5FXP A;  2UUV A;  1ZR6 A;  3PQB A;  1DZN A;  1AHV A;  3KJM A;  1W1L A;  4MLA A;  1W1J A;  1QLU A;  3LLB A;  1F0X A;  3EJE B;  2R2Z A;  2EXR A;  2Q85 A;  3EJB B;  3W8Z A;  1WVE A;  3NVZ B;  3JS8 A;  5FXE A;  3NS1 B;  3NRZ B;  4JAY A;  1DIQ A;  3D2J A;  5I1V A;  3POP A;  1UXY A;  4PWB A;  3S1D A;  1MBT A;  1MBB A;  1FO4 A;  3GSY A;  1V97 A;  3EJD B;  1HSK A;  2IPI A;  2QPM A;  4O95 A;  4PVK A;  4JB1 A;  3SR6 B;  2BVH A;  2VFT A;  3D2H A;  3FWA A;  3FW9 A;  1RM6 B;  5L6G A;  3DED A;  1JRP A;  2WDW A;  5K8E A;  1FFU C;  4UD8 A;  1E8G A;  3AMZ A;  1QLT A;  4EC3 A;  2VFU A;  4PWC A;  1N5X A;  3ETR B;  4PVJ A;  2W54 A;  2Y08 A;  4OAL A;  1W1K A;  3W8W A;  2VFV A;  3W8X A;  4BC9 A;  4PYT A;  3HRD C;  3B9J B;  2Q4W A;  1FFV C;  3RJA A;  5FXF A;  2GQT A;  4HG0 A;  4ML8 A;  1SB3 B;  1E8F A;  1VAO A;  3TSH A;  3PM9 A;  1E8H A;  1W1R A;  3FW7 A;  3NVV B;  5AE1 A;  5D79 A;  4ZOH B;  2R8D A;  3FW8 A;  5FXD A;  1WVF A;  2W55 A;  1VDV A;  2Y4G A;  3S1F A;  1N5W C;  3DQ0 A;  1N61 C;  3TSJ A;  2BVG A;  2E3T A;  1E0Y A;  4DNS A;  3VTE A;  4BCA A;  1W1M A;  5L6F A;  1I19 A;  2BVF A;  1AHZ A;  2NQW A;  3BW7 A;  3C0P A;  1ZXI C;  2MBR A;  1WYG A;  2P4P A;  5I1W A;  5HHZ A;  3S1E A;  1N60 C;  2PLS A; 
#chains in the Genus database with same CATH homology
 2GQU A;  2W3S A;  3D2D A;  3NVY B;  2AXR A;  2YVS A;  3EUB 3;  5ADZ A;  1N63 C;  1W1O A;  4PZF A;  1W1S A;  2OAI A;  2W3R A;  2VFS A;  3AM9 A;  3I99 A;  1W1Q A;  2VFR A;  5AWV A;  5HQX A;  2P3H A;  1FIQ B;  2I0K A;  1AHU A;  5AE3 A;  1JRO A;  4BC7 A;  5G5G B;  1T3Q C;  2Y3R A;  4PVH A;  1N62 C;  3HSU A;  2Y3S A;  2RK5 A;  3NVW B;  3TX1 A;  3RJ8 A;  3AN1 A;  5G5H B;  4XLO A;  4PVE A;  3S1C A;  2O3G A;  1DII A;  3LAE A;  2QKN A;  2P13 A;  5HMR A;  5AE2 A;  4BBY A;  2PLI A;  2UUU A;  2VAO A;  5FXP A;  2UUV A;  1ZR6 A;  3PQB A;  1DZN A;  1AHV A;  3KJM A;  1W1L A;  4MLA A;  1W1J A;  1QLU A;  3LLB A;  1F0X A;  2R2Z A;  2EXR A;  2Q85 A;  3W8Z A;  1WVE A;  3NVZ B;  3JS8 A;  5FXE A;  3NS1 B;  3NRZ B;  4JAY A;  1DIQ A;  3D2J A;  5I1V A;  3POP A;  1UXY A;  4PWB A;  3S1D A;  1MBT A;  1MBB A;  1FO4 A;  3GSY A;  1V97 A;  1HSK A;  2IPI A;  2QPM A;  4O95 A;  4PVK A;  4JB1 A;  3SR6 B;  2BVH A;  2VFT A;  3D2H A;  3FWA A;  3FW9 A;  1RM6 B;  5L6G A;  3DED A;  1JRP A;  2WDW A;  5K8E A;  1FFU C;  4UD8 A;  1E8G A;  3AMZ A;  1QLT A;  4EC3 A;  2VFU A;  4PWC A;  1N5X A;  3ETR B;  4PVJ A;  2W54 A;  2Y08 A;  4OAL A;  1W1K A;  3W8W A;  2VFV A;  3W8X A;  4BC9 A;  4PYT A;  3HRD C;  3B9J B;  2Q4W A;  1FFV C;  3RJA A;  5FXF A;  2GQT A;  4HG0 A;  4ML8 A;  1SB3 B;  1E8F A;  1VAO A;  3TSH A;  3PM9 A;  1E8H A;  1W1R A;  3FW7 A;  3NVV B;  5AE1 A;  5D79 A;  4ZOH B;  2R8D A;  3FW8 A;  5FXD A;  1WVF A;  2W55 A;  1VDV A;  2Y4G A;  3S1F A;  1N5W C;  3DQ0 A;  1N61 C;  3TSJ A;  2BVG A;  2E3T A;  1E0Y A;  4DNS A;  3VTE A;  4BCA A;  1W1M A;  5L6F A;  1I19 A;  2BVF A;  1AHZ A;  2NQW A;  3BW7 A;  3C0P A;  1ZXI C;  2MBR A;  1WYG A;  2P4P A;  5I1W A;  5HHZ A;  3S1E A;  1N60 C;  2PLS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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