1QLUA

Structure of the h422a mutant vanillyl-alcohol oxidase in complex with isoeugenol
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 184
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qluA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qluA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qluA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qluA03
2QKNA 5G5GB 1N63C 1N60C 4BCAA 3S1CA 1ZXIC 1RM6B 4JAYA 1DIQA 4PWCA 2W3RA 1WYGA 3W8XA 4BC9A 1QLTA 1VAOA 2EXRA 2NQWA 2PLIA 5ADZA 1W1RA 5G5HB 3TSJA 3GSYA 1W1LA 1FO4A 4UD8A 3ETRB 2W55A 3S1DA 1SB3B 3NS1B 2QPMA 3JS8A 1VDVA 2W54A 2Q4WA 2YVSA 3AM9A 4BC7A 1DIIA 4XLOA 2O3GA 2P13A 3NVVB 5AE3A 3S1FA 1W1KA 1FFVC 3I99A 2BVHA 4OALA 1E8HA 3NVYB 3EUB3 5HMRA 4JB1A 1HSKA 2BVFA 1AHVA 3SR6B 1F0XA 4PVKA 2P4PA 4ML8A 2GQUA 2BVGA 3S1EA 1E8FA 2E3TA 4MLAA 3FWAA 5AE1A 1QLUA 1MBBA 2W3SA 3FW7A 1JRPA 4PVJA 4PWBA 1MBTA 4PYTA 2VFVA 1DZNA 2VFUA 1W1QA 1N5WC 1W1SA 5AE2A 2I0KA 1WVEA 1N62C 1N61C 4PVHA 4O95A 1AHUA 2VFTA 3NVZB 4DNSA 2PLSA 4PVEA 3FW8A 5D79A 1AHZA 4BBYA 2VFRA 3C0PA 1W1OA 3NRZB 3D2HA 4EC3A 1UXYA 5HHZA 2RK5A 3D2JA 3HRDC 3B9JB 3FW9A 2R2ZA 2VAOA 5FXPA 1JROA 2R8DA 2VFSA 1V97A 3VTEA 5FXEA 3DEDA 5FXFA 3W8ZA 3TX1A 3NVWB 3KJMA 1WVFA 1W1MA 1N5XA 3AN1A 3AMZA 3W8WA 3PM9A 3LLBA 2GQTA 2Q85A 2OAIA 4ZOHB 3BW7A 3LAEA 1E8GA 1W1JA 2AXRA 2MBRA 1T3QC 1FIQB 5HQXA 5FXDA 4PZFA 1FFUC 4HG0A 3D2DA 3DQ0A 1E0YA 1ZR6A 2P3HA 3TSHA 1I19A
chains in the Genus database with same CATH superfamily
2QKNA 5G5GB 1N63C 1N60C 4BCAA 3S1CA 1ZXIC 1RM6B 4JAYA 1DIQA 4PWCA 2W3RA 5K8EA 1WYGA 3W8XA 4BC9A 1QLTA 1VAOA 2EXRA 2NQWA 2PLIA 5ADZA 1W1RA 5G5HB 3TSJA 3GSYA 1W1LA 1FO4A 4UD8A 3ETRB 2W55A 3S1DA 1SB3B 3NS1B 2QPMA 3JS8A 1VDVA 2W54A 2Q4WA 2YVSA 3AM9A 4BC7A 1DIIA 4XLOA 3NVVB 2O3GA 2P13A 5AWVA 3RJ8A 5AE3A 3S1FA 1W1KA 1FFVC 3I99A 2BVHA 4OALA 1E8HA 3NVYB 3EUB3 5HMRA 4JB1A 1HSKA 3RJAA 2BVFA 1AHVA 3SR6B 5I1WA 1F0XA 4PVKA 2P4PA 4ML8A 2GQUA 5L6GA 2BVGA 3S1EA 1E8FA 2E3TA 4MLAA 2UUUA 3FWAA 5AE1A 1QLUA 1MBBA 2W3SA 3FW7A 1JRPA 4PVJA 4PWBA 3HSUA 1MBTA 4PYTA 2VFVA 1DZNA 2VFUA 1W1QA 1N5WC 1W1SA 5AE2A 2I0KA 2IPIA 1WVEA 1N62C 1N61C 4PVHA 4O95A 1AHUA 2WDWA 2VFTA 3NVZB 4DNSA 2PLSA 3PQBA 4PVEA 3FW8A 5D79A 2Y08A 1AHZA 4BBYA 2VFRA 3C0PA 3EJBB 2Y3RA 1W1OA 3NRZB 3D2HA 4EC3A 1UXYA 5HHZA 2Y3SA 2RK5A 3D2JA 3HRDC 3B9JB 3FW9A 5I1VA 2R2ZA 2VAOA 5FXPA 1JROA 2R8DA 2VFSA 1V97A 3VTEA 5FXEA 3DEDA 5FXFA 3W8ZA 3TX1A 3NVWB 3KJMA 1WVFA 1W1MA 1N5XA 3AN1A 3AMZA 3W8WA 3PM9A 3LLBA 2GQTA 2Q85A 2OAIA 4ZOHB 3BW7A 3EJEB 3LAEA 1E8GA 1W1JA 2AXRA 2MBRA 2Y4GA 5L6FA 1T3QC 1FIQB 5HQXA 5FXDA 4PZFA 3POPA 1FFUC 4HG0A 3D2DA 3EJDB 3DQ0A 2UUVA 1E0YA 1ZR6A 2P3HA 3TSHA 1I19A
chains in the Genus database with same CATH topology
2QKNA 5G5GB 1N63C 1N60C 4BCAA 3S1CA 1ZXIC 1RM6B 4JAYA 1DIQA 4PWCA 2W3RA 5K8EA 1WYGA 3W8XA 4BC9A 1QLTA 1VAOA 2EXRA 2NQWA 2PLIA 5ADZA 1W1RA 5G5HB 3TSJA 3GSYA 1W1LA 1FO4A 4UD8A 3ETRB 2W55A 3S1DA 1SB3B 3NS1B 2QPMA 3JS8A 1VDVA 2W54A 2Q4WA 2YVSA 3AM9A 4BC7A 1DIIA 4XLOA 2O3GA 2P13A 3NVVB 5AWVA 3RJ8A 5AE3A 3S1FA 1W1KA 1FFVC 3I99A 2BVHA 4OALA 1E8HA 3NVYB 3EUB3 5HMRA 4JB1A 1HSKA 3RJAA 2BVFA 1AHVA 3SR6B 5I1WA 1F0XA 4PVKA 2P4PA 4ML8A 2GQUA 5L6GA 2BVGA 3S1EA 1E8FA 2E3TA 4MLAA 2UUUA 3FWAA 5AE1A 1QLUA 1MBBA 2W3SA 3FW7A 1JRPA 4PVJA 4PWBA 3HSUA 1MBTA 4PYTA 2VFVA 1DZNA 2VFUA 1W1QA 1N5WC 1W1SA 5AE2A 2I0KA 2IPIA 1WVEA 1N62C 1N61C 4PVHA 4O95A 1AHUA 2WDWA 2VFTA 3NVZB 4DNSA 2PLSA 3PQBA 4PVEA 3FW8A 5D79A 2Y08A 1AHZA 4BBYA 2VFRA 3C0PA 2Y3RA 1W1OA 3NRZB 3D2HA 4EC3A 1UXYA 5HHZA 2Y3SA 2RK5A 3D2JA 3HRDC 3B9JB 3FW9A 5I1VA 2R2ZA 2VAOA 5FXPA 1JROA 2R8DA 2VFSA 1V97A 3VTEA 5FXEA 3DEDA 5FXFA 3W8ZA 3TX1A 3NVWB 3KJMA 1WVFA 1W1MA 1N5XA 3AN1A 3AMZA 3W8WA 3PM9A 3LLBA 2GQTA 2Q85A 2OAIA 4ZOHB 3BW7A 3LAEA 1E8GA 1W1JA 2AXRA 2MBRA 2Y4GA 5L6FA 1T3QC 1FIQB 5HQXA 5FXDA 4PZFA 3POPA 1FFUC 4HG0A 3D2DA 3DQ0A 2UUVA 1E0YA 1ZR6A 2P3HA 3TSHA 1I19A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QKN A;  5G5G B;  1N63 C;  1N60 C;  4BCA A;  3S1C A;  1ZXI C;  1RM6 B;  4JAY A;  1DIQ A;  4PWC A;  2W3R A;  1WYG A;  3W8X A;  4BC9 A;  1QLT A;  1VAO A;  2EXR A;  2NQW A;  2PLI A;  5ADZ A;  1W1R A;  5G5H B;  3TSJ A;  3GSY A;  1W1L A;  1FO4 A;  4UD8 A;  3ETR B;  2W55 A;  3S1D A;  1SB3 B;  3NS1 B;  2QPM A;  3JS8 A;  1VDV A;  2W54 A;  2Q4W A;  2YVS A;  3AM9 A;  4BC7 A;  1DII A;  4XLO A;  2O3G A;  2P13 A;  3NVV B;  5AE3 A;  3S1F A;  1W1K A;  1FFV C;  3I99 A;  2BVH A;  4OAL A;  1E8H A;  3NVY B;  3EUB 3;  5HMR A;  4JB1 A;  1HSK A;  2BVF A;  1AHV A;  3SR6 B;  1F0X A;  4PVK A;  2P4P A;  4ML8 A;  2GQU A;  2BVG A;  3S1E A;  1E8F A;  2E3T A;  4MLA A;  3FWA A;  5AE1 A;  1QLU A;  1MBB A;  2W3S A;  3FW7 A;  1JRP A;  4PVJ A;  4PWB A;  1MBT A;  4PYT A;  2VFV A;  1DZN A;  2VFU A;  1W1Q A;  1N5W C;  1W1S A;  5AE2 A;  2I0K A;  1WVE A;  1N62 C;  1N61 C;  4PVH A;  4O95 A;  1AHU A;  2VFT A;  3NVZ B;  4DNS A;  2PLS A;  4PVE A;  3FW8 A;  5D79 A;  1AHZ A;  4BBY A;  2VFR A;  3C0P A;  1W1O A;  3NRZ B;  3D2H A;  4EC3 A;  1UXY A;  5HHZ A;  2RK5 A;  3D2J A;  3HRD C;  3B9J B;  3FW9 A;  2R2Z A;  2VAO A;  5FXP A;  1JRO A;  2R8D A;  2VFS A;  1V97 A;  3VTE A;  5FXE A;  3DED A;  5FXF A;  3W8Z A;  3TX1 A;  3NVW B;  3KJM A;  1WVF A;  1W1M A;  1N5X A;  3AN1 A;  3AMZ A;  3W8W A;  3PM9 A;  3LLB A;  2GQT A;  2Q85 A;  2OAI A;  4ZOH B;  3BW7 A;  3LAE A;  1E8G A;  1W1J A;  2AXR A;  2MBR A;  1T3Q C;  1FIQ B;  5HQX A;  5FXD A;  4PZF A;  1FFU C;  4HG0 A;  3D2D A;  3DQ0 A;  1E0Y A;  1ZR6 A;  2P3H A;  3TSH A;  1I19 A; 
#chains in the Genus database with same CATH topology
 2QKN A;  5G5G B;  1N63 C;  1N60 C;  4BCA A;  3S1C A;  1ZXI C;  1RM6 B;  4JAY A;  1DIQ A;  4PWC A;  2W3R A;  5K8E A;  1WYG A;  3W8X A;  4BC9 A;  1QLT A;  1VAO A;  2EXR A;  2NQW A;  2PLI A;  5ADZ A;  1W1R A;  5G5H B;  3TSJ A;  3GSY A;  1W1L A;  1FO4 A;  4UD8 A;  3ETR B;  2W55 A;  3S1D A;  1SB3 B;  3NS1 B;  2QPM A;  3JS8 A;  1VDV A;  2W54 A;  2Q4W A;  2YVS A;  3AM9 A;  4BC7 A;  1DII A;  4XLO A;  3NVV B;  2O3G A;  2P13 A;  5AWV A;  3RJ8 A;  5AE3 A;  3S1F A;  1W1K A;  1FFV C;  3I99 A;  2BVH A;  4OAL A;  1E8H A;  3NVY B;  3EUB 3;  5HMR A;  4JB1 A;  1HSK A;  3RJA A;  2BVF A;  1AHV A;  3SR6 B;  5I1W A;  1F0X A;  4PVK A;  2P4P A;  4ML8 A;  2GQU A;  5L6G A;  2BVG A;  3S1E A;  1E8F A;  2E3T A;  4MLA A;  2UUU A;  3FWA A;  5AE1 A;  1QLU A;  1MBB A;  2W3S A;  3FW7 A;  1JRP A;  4PVJ A;  4PWB A;  3HSU A;  1MBT A;  4PYT A;  2VFV A;  1DZN A;  2VFU A;  1W1Q A;  1N5W C;  1W1S A;  5AE2 A;  2I0K A;  2IPI A;  1WVE A;  1N62 C;  1N61 C;  4PVH A;  4O95 A;  1AHU A;  2WDW A;  2VFT A;  3NVZ B;  4DNS A;  2PLS A;  3PQB A;  4PVE A;  3FW8 A;  5D79 A;  2Y08 A;  1AHZ A;  4BBY A;  2VFR A;  3C0P A;  3EJB B;  2Y3R A;  1W1O A;  3NRZ B;  3D2H A;  4EC3 A;  1UXY A;  5HHZ A;  2Y3S A;  2RK5 A;  3D2J A;  3HRD C;  3B9J B;  3FW9 A;  5I1V A;  2R2Z A;  2VAO A;  5FXP A;  1JRO A;  2R8D A;  2VFS A;  1V97 A;  3VTE A;  5FXE A;  3DED A;  5FXF A;  3W8Z A;  3TX1 A;  3NVW B;  3KJM A;  1WVF A;  1W1M A;  1N5X A;  3AN1 A;  3AMZ A;  3W8W A;  3PM9 A;  3LLB A;  2GQT A;  2Q85 A;  2OAI A;  4ZOH B;  3BW7 A;  3EJE B;  3LAE A;  1E8G A;  1W1J A;  2AXR A;  2MBR A;  2Y4G A;  5L6F A;  1T3Q C;  1FIQ B;  5HQX A;  5FXD A;  4PZF A;  3POP A;  1FFU C;  4HG0 A;  3D2D A;  3EJD B;  3DQ0 A;  2UUV A;  1E0Y A;  1ZR6 A;  2P3H A;  3TSH A;  1I19 A; 
#chains in the Genus database with same CATH homology
 2QKN A;  5G5G B;  1N63 C;  1N60 C;  4BCA A;  3S1C A;  1ZXI C;  1RM6 B;  4JAY A;  1DIQ A;  4PWC A;  2W3R A;  5K8E A;  1WYG A;  3W8X A;  4BC9 A;  1QLT A;  1VAO A;  2EXR A;  2NQW A;  2PLI A;  5ADZ A;  1W1R A;  5G5H B;  3TSJ A;  3GSY A;  1W1L A;  1FO4 A;  4UD8 A;  3ETR B;  2W55 A;  3S1D A;  1SB3 B;  3NS1 B;  2QPM A;  3JS8 A;  1VDV A;  2W54 A;  2Q4W A;  2YVS A;  3AM9 A;  4BC7 A;  1DII A;  4XLO A;  2O3G A;  2P13 A;  3NVV B;  5AWV A;  3RJ8 A;  5AE3 A;  3S1F A;  1W1K A;  1FFV C;  3I99 A;  2BVH A;  4OAL A;  1E8H A;  3NVY B;  3EUB 3;  5HMR A;  4JB1 A;  1HSK A;  3RJA A;  2BVF A;  1AHV A;  3SR6 B;  5I1W A;  1F0X A;  4PVK A;  2P4P A;  4ML8 A;  2GQU A;  5L6G A;  2BVG A;  3S1E A;  1E8F A;  2E3T A;  4MLA A;  2UUU A;  3FWA A;  5AE1 A;  1QLU A;  1MBB A;  2W3S A;  3FW7 A;  1JRP A;  4PVJ A;  4PWB A;  3HSU A;  1MBT A;  4PYT A;  2VFV A;  1DZN A;  2VFU A;  1W1Q A;  1N5W C;  1W1S A;  5AE2 A;  2I0K A;  2IPI A;  1WVE A;  1N62 C;  1N61 C;  4PVH A;  4O95 A;  1AHU A;  2WDW A;  2VFT A;  3NVZ B;  4DNS A;  2PLS A;  3PQB A;  4PVE A;  3FW8 A;  5D79 A;  2Y08 A;  1AHZ A;  4BBY A;  2VFR A;  3C0P A;  2Y3R A;  1W1O A;  3NRZ B;  3D2H A;  4EC3 A;  1UXY A;  5HHZ A;  2Y3S A;  2RK5 A;  3D2J A;  3HRD C;  3B9J B;  3FW9 A;  5I1V A;  2R2Z A;  2VAO A;  5FXP A;  1JRO A;  2R8D A;  2VFS A;  1V97 A;  3VTE A;  5FXE A;  3DED A;  5FXF A;  3W8Z A;  3TX1 A;  3NVW B;  3KJM A;  1WVF A;  1W1M A;  1N5X A;  3AN1 A;  3AMZ A;  3W8W A;  3PM9 A;  3LLB A;  2GQT A;  2Q85 A;  2OAI A;  4ZOH B;  3BW7 A;  3LAE A;  1E8G A;  1W1J A;  2AXR A;  2MBR A;  2Y4G A;  5L6F A;  1T3Q C;  1FIQ B;  5HQX A;  5FXD A;  4PZF A;  3POP A;  1FFU C;  4HG0 A;  3D2D A;  3DQ0 A;  2UUV A;  1E0Y A;  1ZR6 A;  2P3H A;  3TSH A;  1I19 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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