1DIIA

Crystal structure of p-cresol methylhydroxylase at 2.5 a resolution
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
515
structure length
515
Chain Sequence
AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords P-CRESOL METHYLHYDROXYLASE
publication title Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism.
pubmed doi rcsb
total genus 180
structure length 515
sequence length 515
chains with identical sequence B
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 1999-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1diiA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1diiA02
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1diiA03
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1diiA01
2W3SA 3EUB3 4PWBA 2PLSA 1MBBA 1W1MA 3LAEA 3LLBA 1WYGA 1N61C 1E8GA 1QLUA 2BVGA 2Q85A 1ZXIC 5HHZA 1N62C 4OALA 5G5HB 3S1CA 3C0PA 1E8FA 5G5GB 1UXYA 1E8HA 2VAOA 2W55A 3AMZA 3TSHA 3NVWB 1WVEA 1VAOA 1W1SA 3FWAA 3GSYA 4JAYA 5FXPA 2GQTA 2VFTA 3TSJA 1AHUA 4PVKA 5D79A 1QLTA 2E3TA 1MBTA 3S1DA 3NVVB 3SR6B 3W8XA 4O95A 3TX1A 1E0YA 2P3HA 1W1JA 1F0XA 2O3GA 4PVHA 3I99A 5HQXA 2VFSA 1VDVA 4BC9A 2QPMA 3W8WA 2VFUA 2P13A 3FW9A 3NS1B 2AXRA 4PVJA 3DEDA 1AHZA 3NRZB 4ZOHB 5FXDA 1FO4A 5FXEA 2I0KA 1W1KA 3DQ0A 4EC3A 4HG0A 2R8DA 1ZR6A 4BC7A 1N63C 3BW7A 4DNSA 1N60C 3W8ZA 5HMRA 4PVEA 2YVSA 3PM9A 1W1RA 2Q4WA 2BVHA 2PLIA 5AE3A 1W1QA 3S1FA 5AE1A 1WVFA 1W1OA 1FFUC 3B9JB 3FW7A 3NVZB 3FW8A 4JB1A 3ETRB 2MBRA 4XLOA 2VFRA 1N5XA 4PYTA 3JS8A 4BBYA 3D2HA 1DZNA 4ML8A 5AE2A 2GQUA 1JROA 2OAIA 1DIIA 3VTEA 2EXRA 4UD8A 3S1EA 1I19A 4BCAA 3D2DA 1DIQA 2RK5A 5FXFA 1N5WC 1AHVA 4MLAA 2P4PA 2BVFA 3AN1A 3KJMA 1RM6B 3HRDC 2W54A 1SB3B 3NVYB 1FFVC 4PWCA 3D2JA 2R2ZA 1W1LA 1V97A 4PZFA 2VFVA 1T3QC 2NQWA 5ADZA 1HSKA 1JRPA 3AM9A 2W3RA 1FIQB 2QKNA
chains in the Genus database with same CATH superfamily
2W3SA 3EUB3 4PWBA 2PLSA 1MBBA 1W1MA 3LAEA 3LLBA 1WYGA 1N61C 1E8GA 1QLUA 2BVGA 2Q85A 1ZXIC 5HHZA 2Y3RA 1N62C 4OALA 5G5HB 3S1CA 3C0PA 1E8FA 5G5GB 1UXYA 1E8HA 2VAOA 2W55A 3AMZA 3EJDB 3POPA 3NVWB 3TSHA 1WVEA 1VAOA 1W1SA 3FWAA 3GSYA 4JAYA 5FXPA 2GQTA 2VFTA 3TSJA 5AWVA 5K8EA 1AHUA 4PVKA 5D79A 1QLTA 2E3TA 2Y4GA 1MBTA 3S1DA 3NVVB 3SR6B 3W8XA 4O95A 3TX1A 1E0YA 2P3HA 1W1JA 1F0XA 2O3GA 4PVHA 3RJAA 3I99A 5HQXA 2VFSA 1VDVA 5L6GA 4BC9A 2QPMA 3W8WA 2VFUA 2P13A 3FW9A 3NS1B 2AXRA 4PVJA 3DEDA 1AHZA 3NRZB 4ZOHB 5FXDA 1FO4A 3RJ8A 5FXEA 2I0KA 3HSUA 1W1KA 3DQ0A 4EC3A 4HG0A 2R8DA 1ZR6A 4BC7A 1N63C 2UUVA 3EJEB 3BW7A 4DNSA 1N60C 3W8ZA 5HMRA 2WDWA 4PVEA 2YVSA 3PM9A 1W1RA 2Q4WA 2BVHA 2PLIA 5AE3A 1W1QA 3S1FA 5AE1A 1WVFA 1W1OA 1FFUC 3B9JB 3FW7A 3NVZB 2Y08A 3FW8A 4JB1A 2UUUA 5I1WA 3ETRB 2MBRA 4XLOA 2VFRA 1N5XA 4PYTA 3JS8A 4BBYA 3D2HA 5I1VA 1DZNA 4ML8A 5AE2A 2GQUA 1JROA 2OAIA 1DIIA 3VTEA 2EXRA 4UD8A 3S1EA 1I19A 4BCAA 3D2DA 1DIQA 2RK5A 5FXFA 1N5WC 1AHVA 3PQBA 4MLAA 2P4PA 2BVFA 3AN1A 3KJMA 1RM6B 3HRDC 2W54A 3NVYB 1SB3B 1FFVC 5L6FA 4PWCA 3D2JA 2R2ZA 1W1LA 1V97A 3EJBB 4PZFA 2VFVA 1T3QC 2NQWA 2IPIA 5ADZA 1HSKA 1JRPA 3AM9A 2Y3SA 2W3RA 1FIQB 2QKNA
chains in the Genus database with same CATH topology
2W3SA 3EUB3 4PWBA 2PLSA 1MBBA 1W1MA 3LAEA 3LLBA 1WYGA 1N61C 1E8GA 1QLUA 2BVGA 2Q85A 1ZXIC 5HHZA 2Y3RA 1N62C 4OALA 5G5HB 3S1CA 3C0PA 1E8FA 5G5GB 1UXYA 1E8HA 2VAOA 2W55A 3AMZA 3POPA 3TSHA 3NVWB 1WVEA 1VAOA 1W1SA 3FWAA 3GSYA 4JAYA 5FXPA 2GQTA 2VFTA 3TSJA 5AWVA 5K8EA 1AHUA 4PVKA 5D79A 1QLTA 2E3TA 2Y4GA 1MBTA 3S1DA 3NVVB 3SR6B 3W8XA 4O95A 3TX1A 1E0YA 2P3HA 1W1JA 1F0XA 2O3GA 4PVHA 3RJAA 3I99A 5HQXA 2VFSA 1VDVA 5L6GA 4BC9A 2QPMA 3W8WA 2VFUA 2P13A 3FW9A 3NS1B 2AXRA 4PVJA 3DEDA 1AHZA 3NRZB 4ZOHB 5FXDA 1FO4A 3RJ8A 5FXEA 2I0KA 3HSUA 1W1KA 3DQ0A 4EC3A 4HG0A 2R8DA 1ZR6A 4BC7A 1N63C 2UUVA 3BW7A 4DNSA 1N60C 3W8ZA 5HMRA 2WDWA 4PVEA 2YVSA 3PM9A 1W1RA 2Q4WA 2BVHA 2PLIA 5AE3A 1W1QA 3S1FA 5AE1A 1WVFA 1W1OA 1FFUC 3B9JB 3FW7A 3NVZB 2Y08A 3FW8A 4JB1A 2UUUA 5I1WA 3ETRB 2MBRA 4XLOA 2VFRA 1N5XA 4PYTA 3JS8A 4BBYA 3D2HA 5I1VA 1DZNA 4ML8A 5AE2A 2GQUA 1JROA 2OAIA 1DIIA 3VTEA 2EXRA 4UD8A 3S1EA 1I19A 4BCAA 3D2DA 1DIQA 2RK5A 5FXFA 1N5WC 1AHVA 3PQBA 4MLAA 2P4PA 2BVFA 3AN1A 3KJMA 1RM6B 3HRDC 2W54A 1SB3B 3NVYB 1FFVC 5L6FA 4PWCA 3D2JA 2R2ZA 1W1LA 1V97A 4PZFA 2VFVA 1T3QC 2NQWA 2IPIA 5ADZA 1HSKA 1JRPA 3AM9A 2Y3SA 2W3RA 1FIQB 2QKNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W3S A;  3EUB 3;  4PWB A;  2PLS A;  1MBB A;  1W1M A;  3LAE A;  3LLB A;  1WYG A;  1N61 C;  1E8G A;  1QLU A;  2BVG A;  2Q85 A;  1ZXI C;  5HHZ A;  1N62 C;  4OAL A;  5G5H B;  3S1C A;  3C0P A;  1E8F A;  5G5G B;  1UXY A;  1E8H A;  2VAO A;  2W55 A;  3AMZ A;  3TSH A;  3NVW B;  1WVE A;  1VAO A;  1W1S A;  3FWA A;  3GSY A;  4JAY A;  5FXP A;  2GQT A;  2VFT A;  3TSJ A;  1AHU A;  4PVK A;  5D79 A;  1QLT A;  2E3T A;  1MBT A;  3S1D A;  3NVV B;  3SR6 B;  3W8X A;  4O95 A;  3TX1 A;  1E0Y A;  2P3H A;  1W1J A;  1F0X A;  2O3G A;  4PVH A;  3I99 A;  5HQX A;  2VFS A;  1VDV A;  4BC9 A;  2QPM A;  3W8W A;  2VFU A;  2P13 A;  3FW9 A;  3NS1 B;  2AXR A;  4PVJ A;  3DED A;  1AHZ A;  3NRZ B;  4ZOH B;  5FXD A;  1FO4 A;  5FXE A;  2I0K A;  1W1K A;  3DQ0 A;  4EC3 A;  4HG0 A;  2R8D A;  1ZR6 A;  4BC7 A;  1N63 C;  3BW7 A;  4DNS A;  1N60 C;  3W8Z A;  5HMR A;  4PVE A;  2YVS A;  3PM9 A;  1W1R A;  2Q4W A;  2BVH A;  2PLI A;  5AE3 A;  1W1Q A;  3S1F A;  5AE1 A;  1WVF A;  1W1O A;  1FFU C;  3B9J B;  3FW7 A;  3NVZ B;  3FW8 A;  4JB1 A;  3ETR B;  2MBR A;  4XLO A;  2VFR A;  1N5X A;  4PYT A;  3JS8 A;  4BBY A;  3D2H A;  1DZN A;  4ML8 A;  5AE2 A;  2GQU A;  1JRO A;  2OAI A;  1DII A;  3VTE A;  2EXR A;  4UD8 A;  3S1E A;  1I19 A;  4BCA A;  3D2D A;  1DIQ A;  2RK5 A;  5FXF A;  1N5W C;  1AHV A;  4MLA A;  2P4P A;  2BVF A;  3AN1 A;  3KJM A;  1RM6 B;  3HRD C;  2W54 A;  1SB3 B;  3NVY B;  1FFV C;  4PWC A;  3D2J A;  2R2Z A;  1W1L A;  1V97 A;  4PZF A;  2VFV A;  1T3Q C;  2NQW A;  5ADZ A;  1HSK A;  1JRP A;  3AM9 A;  2W3R A;  1FIQ B;  2QKN A; 
#chains in the Genus database with same CATH topology
 2W3S A;  3EUB 3;  4PWB A;  2PLS A;  1MBB A;  1W1M A;  3LAE A;  3LLB A;  1WYG A;  1N61 C;  1E8G A;  1QLU A;  2BVG A;  2Q85 A;  1ZXI C;  5HHZ A;  2Y3R A;  1N62 C;  4OAL A;  5G5H B;  3S1C A;  3C0P A;  1E8F A;  5G5G B;  1UXY A;  1E8H A;  2VAO A;  2W55 A;  3AMZ A;  3EJD B;  3POP A;  3NVW B;  3TSH A;  1WVE A;  1VAO A;  1W1S A;  3FWA A;  3GSY A;  4JAY A;  5FXP A;  2GQT A;  2VFT A;  3TSJ A;  5AWV A;  5K8E A;  1AHU A;  4PVK A;  5D79 A;  1QLT A;  2E3T A;  2Y4G A;  1MBT A;  3S1D A;  3NVV B;  3SR6 B;  3W8X A;  4O95 A;  3TX1 A;  1E0Y A;  2P3H A;  1W1J A;  1F0X A;  2O3G A;  4PVH A;  3RJA A;  3I99 A;  5HQX A;  2VFS A;  1VDV A;  5L6G A;  4BC9 A;  2QPM A;  3W8W A;  2VFU A;  2P13 A;  3FW9 A;  3NS1 B;  2AXR A;  4PVJ A;  3DED A;  1AHZ A;  3NRZ B;  4ZOH B;  5FXD A;  1FO4 A;  3RJ8 A;  5FXE A;  2I0K A;  3HSU A;  1W1K A;  3DQ0 A;  4EC3 A;  4HG0 A;  2R8D A;  1ZR6 A;  4BC7 A;  1N63 C;  2UUV A;  3EJE B;  3BW7 A;  4DNS A;  1N60 C;  3W8Z A;  5HMR A;  2WDW A;  4PVE A;  2YVS A;  3PM9 A;  1W1R A;  2Q4W A;  2BVH A;  2PLI A;  5AE3 A;  1W1Q A;  3S1F A;  5AE1 A;  1WVF A;  1W1O A;  1FFU C;  3B9J B;  3FW7 A;  3NVZ B;  2Y08 A;  3FW8 A;  4JB1 A;  2UUU A;  5I1W A;  3ETR B;  2MBR A;  4XLO A;  2VFR A;  1N5X A;  4PYT A;  3JS8 A;  4BBY A;  3D2H A;  5I1V A;  1DZN A;  4ML8 A;  5AE2 A;  2GQU A;  1JRO A;  2OAI A;  1DII A;  3VTE A;  2EXR A;  4UD8 A;  3S1E A;  1I19 A;  4BCA A;  3D2D A;  1DIQ A;  2RK5 A;  5FXF A;  1N5W C;  1AHV A;  3PQB A;  4MLA A;  2P4P A;  2BVF A;  3AN1 A;  3KJM A;  1RM6 B;  3HRD C;  2W54 A;  3NVY B;  1SB3 B;  1FFV C;  5L6F A;  4PWC A;  3D2J A;  2R2Z A;  1W1L A;  1V97 A;  3EJB B;  4PZF A;  2VFV A;  1T3Q C;  2NQW A;  2IPI A;  5ADZ A;  1HSK A;  1JRP A;  3AM9 A;  2Y3S A;  2W3R A;  1FIQ B;  2QKN A; 
#chains in the Genus database with same CATH homology
 2W3S A;  3EUB 3;  4PWB A;  2PLS A;  1MBB A;  1W1M A;  3LAE A;  3LLB A;  1WYG A;  1N61 C;  1E8G A;  1QLU A;  2BVG A;  2Q85 A;  1ZXI C;  5HHZ A;  2Y3R A;  1N62 C;  4OAL A;  5G5H B;  3S1C A;  3C0P A;  1E8F A;  5G5G B;  1UXY A;  1E8H A;  2VAO A;  2W55 A;  3AMZ A;  3POP A;  3TSH A;  3NVW B;  1WVE A;  1VAO A;  1W1S A;  3FWA A;  3GSY A;  4JAY A;  5FXP A;  2GQT A;  2VFT A;  3TSJ A;  5AWV A;  5K8E A;  1AHU A;  4PVK A;  5D79 A;  1QLT A;  2E3T A;  2Y4G A;  1MBT A;  3S1D A;  3NVV B;  3SR6 B;  3W8X A;  4O95 A;  3TX1 A;  1E0Y A;  2P3H A;  1W1J A;  1F0X A;  2O3G A;  4PVH A;  3RJA A;  3I99 A;  5HQX A;  2VFS A;  1VDV A;  5L6G A;  4BC9 A;  2QPM A;  3W8W A;  2VFU A;  2P13 A;  3FW9 A;  3NS1 B;  2AXR A;  4PVJ A;  3DED A;  1AHZ A;  3NRZ B;  4ZOH B;  5FXD A;  1FO4 A;  3RJ8 A;  5FXE A;  2I0K A;  3HSU A;  1W1K A;  3DQ0 A;  4EC3 A;  4HG0 A;  2R8D A;  1ZR6 A;  4BC7 A;  1N63 C;  2UUV A;  3BW7 A;  4DNS A;  1N60 C;  3W8Z A;  5HMR A;  2WDW A;  4PVE A;  2YVS A;  3PM9 A;  1W1R A;  2Q4W A;  2BVH A;  2PLI A;  5AE3 A;  1W1Q A;  3S1F A;  5AE1 A;  1WVF A;  1W1O A;  1FFU C;  3B9J B;  3FW7 A;  3NVZ B;  2Y08 A;  3FW8 A;  4JB1 A;  2UUU A;  5I1W A;  3ETR B;  2MBR A;  4XLO A;  2VFR A;  1N5X A;  4PYT A;  3JS8 A;  4BBY A;  3D2H A;  5I1V A;  1DZN A;  4ML8 A;  5AE2 A;  2GQU A;  1JRO A;  2OAI A;  1DII A;  3VTE A;  2EXR A;  4UD8 A;  3S1E A;  1I19 A;  4BCA A;  3D2D A;  1DIQ A;  2RK5 A;  5FXF A;  1N5W C;  1AHV A;  3PQB A;  4MLA A;  2P4P A;  2BVF A;  3AN1 A;  3KJM A;  1RM6 B;  3HRD C;  2W54 A;  1SB3 B;  3NVY B;  1FFV C;  5L6F A;  4PWC A;  3D2J A;  2R2Z A;  1W1L A;  1V97 A;  4PZF A;  2VFV A;  1T3Q C;  2NQW A;  2IPI A;  5ADZ A;  1HSK A;  1JRP A;  3AM9 A;  2Y3S A;  2W3R A;  1FIQ B;  2QKN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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