1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
1JRPA 3FW9A 3LLBA 2VFTA 1T3QC 1JROA 2VFVA 3W8WA 1DIIA 3BW7A 2BVHA 1FFUC 4PVEA 3TX1A 4PVKA 1E8GA 2W55A 1AHVA 1E8FA 3VTEA 4MLAA 1MBBA 2R2ZA 1N5XA 2VFSA 1E0YA 3EUB3 3D2DA 1MBTA 2PLIA 1W1KA 1N62C 1UXYA 2OAIA 2AXRA 3DEDA 5FXPA 1QLUA 1W1LA 3NRZB 4OALA 3NVZB 4BCAA 5D79A 4DNSA 5HQXA 2PLSA 1VAOA 1WVEA 1V97A 2Q85A 4PWBA 3PM9A 1DIQA 3GSYA 3W8ZA 4PWCA 3S1DA 3NS1B 1VDVA 4ZOHB 1ZXIC 3ETRB 4PZFA 1FO4A 5HHZA 3B9JB 3FW8A 3KJMA 1N63C 1W1MA 3I99A 4EC3A 1N5WC 5HMRA 2P3HA 2W3RA 1DZNA 3D2JA 1W1QA 2BVGA 5ADZA 3S1FA 1W1JA 3LAEA 1F0XA 5AE3A 3TSHA 1QLTA 3S1CA 4PVHA 2MBRA 5FXEA 2VFUA 4BC9A 1RM6B 3FWAA 4JB1A 2EXRA 1WYGA 2W54A 2YVSA 1SB3B 3HRDC 2W3SA 3AN1A 2I0KA 3FW7A 2P13A 4BBYA 5G5HB 3JS8A 3AMZA 1W1SA 5AE2A 3W8XA 3NVWB 5AE1A 2QKNA 3C0PA 3AM9A 2RK5A 2BVFA 2GQTA 4HG0A 3SR6B 2R8DA 1AHZA 1FFVC 3S1EA 1E8HA 2P4PA 1I19A 1AHUA 5G5GB 1N61C 1ZR6A 1W1OA 1FIQB 2GQUA 3NVVB 4PVJA 4ML8A 2VFRA 2QPMA 3NVYB 5FXFA 1HSKA 3TSJA 4BC7A 3DQ0A 1W1RA 2E3TA 1N60C 2NQWA 1WVFA 4PYTA 2VAOA 4JAYA 5FXDA 2O3GA 4UD8A 2Q4WA 3D2HA 4XLOA 4O95A
chains in the Genus database with same CATH superfamily
1JRPA 5I1WA 3FW9A 3LLBA 2VFTA 1T3QC 1JROA 2VFVA 3W8WA 1DIIA 3BW7A 2BVHA 1FFUC 4PVEA 3TX1A 4PVKA 1E8GA 2W55A 1AHVA 1E8FA 5L6GA 3VTEA 4MLAA 1MBBA 2R2ZA 1N5XA 2VFSA 1E0YA 3EUB3 3D2DA 1MBTA 5L6FA 2PLIA 1W1KA 1N62C 1UXYA 2OAIA 2AXRA 3DEDA 5FXPA 1QLUA 1W1LA 3NRZB 4OALA 3NVZB 4BCAA 5D79A 4DNSA 5HQXA 2PLSA 1VAOA 1WVEA 1V97A 2Q85A 4PWBA 3PM9A 5AWVA 1DIQA 3GSYA 3W8ZA 4PWCA 3S1DA 5K8EA 3NS1B 1VDVA 4ZOHB 1ZXIC 3ETRB 4PZFA 1FO4A 2Y3RA 5HHZA 3B9JB 3FW8A 3KJMA 1N63C 1W1MA 3I99A 4EC3A 1N5WC 5HMRA 2P3HA 2W3RA 1DZNA 3D2JA 1W1QA 2BVGA 5ADZA 3S1FA 1W1JA 3LAEA 1F0XA 5AE3A 3TSHA 1QLTA 3S1CA 4PVHA 2MBRA 5FXEA 2VFUA 4BC9A 1RM6B 3HSUA 3FWAA 4JB1A 2EXRA 3RJ8A 3EJBB 1WYGA 2W54A 2YVSA 1SB3B 3HRDC 2W3SA 3AN1A 2I0KA 3FW7A 2P13A 4BBYA 5G5HB 3JS8A 3AMZA 1W1SA 5AE2A 3POPA 3NVWB 3W8XA 5AE1A 2QKNA 3C0PA 3AM9A 2RK5A 2BVFA 2GQTA 4HG0A 2Y4GA 2IPIA 2UUVA 3SR6B 2R8DA 1AHZA 1FFVC 3S1EA 2Y3SA 1E8HA 2P4PA 1I19A 1AHUA 5G5GB 1N61C 1ZR6A 1W1OA 1FIQB 2GQUA 3NVVB 4PVJA 4ML8A 2VFRA 2QPMA 3NVYB 2Y08A 5FXFA 1HSKA 2UUUA 3TSJA 2WDWA 4BC7A 3RJAA 3DQ0A 1W1RA 2E3TA 1N60C 5I1VA 2NQWA 1WVFA 4PYTA 3EJEB 2VAOA 4JAYA 5FXDA 2O3GA 4UD8A 2Q4WA 3PQBA 3EJDB 3D2HA 4XLOA 4O95A
chains in the Genus database with same CATH topology
1JRPA 5I1WA 3FW9A 3LLBA 2VFTA 1T3QC 1JROA 2VFVA 3W8WA 1DIIA 3BW7A 2BVHA 1FFUC 4PVEA 3TX1A 4PVKA 1E8GA 2W55A 1AHVA 1E8FA 5L6GA 3VTEA 4MLAA 1MBBA 2R2ZA 1N5XA 2VFSA 1E0YA 3EUB3 3D2DA 1MBTA 5L6FA 2PLIA 1W1KA 1N62C 1UXYA 2OAIA 2AXRA 3DEDA 5FXPA 1QLUA 1W1LA 3NRZB 4OALA 3NVZB 4BCAA 5D79A 4DNSA 5HQXA 2PLSA 1VAOA 1WVEA 1V97A 2Q85A 4PWBA 3PM9A 5AWVA 1DIQA 3GSYA 3W8ZA 4PWCA 3S1DA 5K8EA 3NS1B 1VDVA 4ZOHB 1ZXIC 3ETRB 4PZFA 1FO4A 2Y3RA 5HHZA 3B9JB 3FW8A 3KJMA 1N63C 1W1MA 3I99A 4EC3A 1N5WC 5HMRA 2P3HA 2W3RA 1DZNA 3D2JA 1W1QA 2BVGA 5ADZA 3S1FA 1W1JA 3LAEA 1F0XA 5AE3A 3TSHA 1QLTA 3S1CA 4PVHA 2MBRA 5FXEA 2VFUA 4BC9A 1RM6B 3HSUA 3FWAA 4JB1A 2EXRA 3RJ8A 1WYGA 2W54A 2YVSA 1SB3B 3HRDC 2W3SA 3AN1A 2I0KA 3FW7A 2P13A 4BBYA 5G5HB 3JS8A 3AMZA 1W1SA 5AE2A 3POPA 3W8XA 3NVWB 5AE1A 2QKNA 3C0PA 3AM9A 2RK5A 2BVFA 2GQTA 4HG0A 2Y4GA 2IPIA 2UUVA 3SR6B 2R8DA 1AHZA 1FFVC 3S1EA 2Y3SA 1E8HA 2P4PA 1I19A 1AHUA 5G5GB 1N61C 1ZR6A 1W1OA 1FIQB 2GQUA 3NVVB 4PVJA 4ML8A 2VFRA 2QPMA 3NVYB 2Y08A 5FXFA 1HSKA 2UUUA 3TSJA 2WDWA 4BC7A 3RJAA 3DQ0A 1W1RA 2E3TA 1N60C 5I1VA 2NQWA 1WVFA 4PYTA 2VAOA 4JAYA 5FXDA 2O3GA 4UD8A 2Q4WA 3PQBA 3D2HA 4XLOA 4O95A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRP A;  3FW9 A;  3LLB A;  2VFT A;  1T3Q C;  1JRO A;  2VFV A;  3W8W A;  1DII A;  3BW7 A;  2BVH A;  1FFU C;  4PVE A;  3TX1 A;  4PVK A;  1E8G A;  2W55 A;  1AHV A;  1E8F A;  3VTE A;  4MLA A;  1MBB A;  2R2Z A;  1N5X A;  2VFS A;  1E0Y A;  3EUB 3;  3D2D A;  1MBT A;  2PLI A;  1W1K A;  1N62 C;  1UXY A;  2OAI A;  2AXR A;  3DED A;  5FXP A;  1QLU A;  1W1L A;  3NRZ B;  4OAL A;  3NVZ B;  4BCA A;  5D79 A;  4DNS A;  5HQX A;  2PLS A;  1VAO A;  1WVE A;  1V97 A;  2Q85 A;  4PWB A;  3PM9 A;  1DIQ A;  3GSY A;  3W8Z A;  4PWC A;  3S1D A;  3NS1 B;  1VDV A;  4ZOH B;  1ZXI C;  3ETR B;  4PZF A;  1FO4 A;  5HHZ A;  3B9J B;  3FW8 A;  3KJM A;  1N63 C;  1W1M A;  3I99 A;  4EC3 A;  1N5W C;  5HMR A;  2P3H A;  2W3R A;  1DZN A;  3D2J A;  1W1Q A;  2BVG A;  5ADZ A;  3S1F A;  1W1J A;  3LAE A;  1F0X A;  5AE3 A;  3TSH A;  1QLT A;  3S1C A;  4PVH A;  2MBR A;  5FXE A;  2VFU A;  4BC9 A;  1RM6 B;  3FWA A;  4JB1 A;  2EXR A;  1WYG A;  2W54 A;  2YVS A;  1SB3 B;  3HRD C;  2W3S A;  3AN1 A;  2I0K A;  3FW7 A;  2P13 A;  4BBY A;  5G5H B;  3JS8 A;  3AMZ A;  1W1S A;  5AE2 A;  3W8X A;  3NVW B;  5AE1 A;  2QKN A;  3C0P A;  3AM9 A;  2RK5 A;  2BVF A;  2GQT A;  4HG0 A;  3SR6 B;  2R8D A;  1AHZ A;  1FFV C;  3S1E A;  1E8H A;  2P4P A;  1I19 A;  1AHU A;  5G5G B;  1N61 C;  1ZR6 A;  1W1O A;  1FIQ B;  2GQU A;  3NVV B;  4PVJ A;  4ML8 A;  2VFR A;  2QPM A;  3NVY B;  5FXF A;  1HSK A;  3TSJ A;  4BC7 A;  3DQ0 A;  1W1R A;  2E3T A;  1N60 C;  2NQW A;  1WVF A;  4PYT A;  2VAO A;  4JAY A;  5FXD A;  2O3G A;  4UD8 A;  2Q4W A;  3D2H A;  4XLO A;  4O95 A; 
#chains in the Genus database with same CATH topology
 1JRP A;  5I1W A;  3FW9 A;  3LLB A;  2VFT A;  1T3Q C;  1JRO A;  2VFV A;  3W8W A;  1DII A;  3BW7 A;  2BVH A;  1FFU C;  4PVE A;  3TX1 A;  4PVK A;  1E8G A;  2W55 A;  1AHV A;  1E8F A;  5L6G A;  3VTE A;  4MLA A;  1MBB A;  2R2Z A;  1N5X A;  2VFS A;  1E0Y A;  3EUB 3;  3D2D A;  1MBT A;  5L6F A;  2PLI A;  1W1K A;  1N62 C;  1UXY A;  2OAI A;  2AXR A;  3DED A;  5FXP A;  1QLU A;  1W1L A;  3NRZ B;  4OAL A;  3NVZ B;  4BCA A;  5D79 A;  4DNS A;  5HQX A;  2PLS A;  1VAO A;  1WVE A;  1V97 A;  2Q85 A;  4PWB A;  3PM9 A;  5AWV A;  1DIQ A;  3GSY A;  3W8Z A;  4PWC A;  3S1D A;  5K8E A;  3NS1 B;  1VDV A;  4ZOH B;  1ZXI C;  3ETR B;  4PZF A;  1FO4 A;  2Y3R A;  5HHZ A;  3B9J B;  3FW8 A;  3KJM A;  1N63 C;  1W1M A;  3I99 A;  4EC3 A;  1N5W C;  5HMR A;  2P3H A;  2W3R A;  1DZN A;  3D2J A;  1W1Q A;  2BVG A;  5ADZ A;  3S1F A;  1W1J A;  3LAE A;  1F0X A;  5AE3 A;  3TSH A;  1QLT A;  3S1C A;  4PVH A;  2MBR A;  5FXE A;  2VFU A;  4BC9 A;  1RM6 B;  3HSU A;  3FWA A;  4JB1 A;  2EXR A;  3RJ8 A;  3EJB B;  1WYG A;  2W54 A;  2YVS A;  1SB3 B;  3HRD C;  2W3S A;  3AN1 A;  2I0K A;  3FW7 A;  2P13 A;  4BBY A;  5G5H B;  3JS8 A;  3AMZ A;  1W1S A;  5AE2 A;  3POP A;  3NVW B;  3W8X A;  5AE1 A;  2QKN A;  3C0P A;  3AM9 A;  2RK5 A;  2BVF A;  2GQT A;  4HG0 A;  2Y4G A;  2IPI A;  2UUV A;  3SR6 B;  2R8D A;  1AHZ A;  1FFV C;  3S1E A;  2Y3S A;  1E8H A;  2P4P A;  1I19 A;  1AHU A;  5G5G B;  1N61 C;  1ZR6 A;  1W1O A;  1FIQ B;  2GQU A;  3NVV B;  4PVJ A;  4ML8 A;  2VFR A;  2QPM A;  3NVY B;  2Y08 A;  5FXF A;  1HSK A;  2UUU A;  3TSJ A;  2WDW A;  4BC7 A;  3RJA A;  3DQ0 A;  1W1R A;  2E3T A;  1N60 C;  5I1V A;  2NQW A;  1WVF A;  4PYT A;  3EJE B;  2VAO A;  4JAY A;  5FXD A;  2O3G A;  4UD8 A;  2Q4W A;  3PQB A;  3EJD B;  3D2H A;  4XLO A;  4O95 A; 
#chains in the Genus database with same CATH homology
 1JRP A;  5I1W A;  3FW9 A;  3LLB A;  2VFT A;  1T3Q C;  1JRO A;  2VFV A;  3W8W A;  1DII A;  3BW7 A;  2BVH A;  1FFU C;  4PVE A;  3TX1 A;  4PVK A;  1E8G A;  2W55 A;  1AHV A;  1E8F A;  5L6G A;  3VTE A;  4MLA A;  1MBB A;  2R2Z A;  1N5X A;  2VFS A;  1E0Y A;  3EUB 3;  3D2D A;  1MBT A;  5L6F A;  2PLI A;  1W1K A;  1N62 C;  1UXY A;  2OAI A;  2AXR A;  3DED A;  5FXP A;  1QLU A;  1W1L A;  3NRZ B;  4OAL A;  3NVZ B;  4BCA A;  5D79 A;  4DNS A;  5HQX A;  2PLS A;  1VAO A;  1WVE A;  1V97 A;  2Q85 A;  4PWB A;  3PM9 A;  5AWV A;  1DIQ A;  3GSY A;  3W8Z A;  4PWC A;  3S1D A;  5K8E A;  3NS1 B;  1VDV A;  4ZOH B;  1ZXI C;  3ETR B;  4PZF A;  1FO4 A;  2Y3R A;  5HHZ A;  3B9J B;  3FW8 A;  3KJM A;  1N63 C;  1W1M A;  3I99 A;  4EC3 A;  1N5W C;  5HMR A;  2P3H A;  2W3R A;  1DZN A;  3D2J A;  1W1Q A;  2BVG A;  5ADZ A;  3S1F A;  1W1J A;  3LAE A;  1F0X A;  5AE3 A;  3TSH A;  1QLT A;  3S1C A;  4PVH A;  2MBR A;  5FXE A;  2VFU A;  4BC9 A;  1RM6 B;  3HSU A;  3FWA A;  4JB1 A;  2EXR A;  3RJ8 A;  1WYG A;  2W54 A;  2YVS A;  1SB3 B;  3HRD C;  2W3S A;  3AN1 A;  2I0K A;  3FW7 A;  2P13 A;  4BBY A;  5G5H B;  3JS8 A;  3AMZ A;  1W1S A;  5AE2 A;  3POP A;  3W8X A;  3NVW B;  5AE1 A;  2QKN A;  3C0P A;  3AM9 A;  2RK5 A;  2BVF A;  2GQT A;  4HG0 A;  2Y4G A;  2IPI A;  2UUV A;  3SR6 B;  2R8D A;  1AHZ A;  1FFV C;  3S1E A;  2Y3S A;  1E8H A;  2P4P A;  1I19 A;  1AHU A;  5G5G B;  1N61 C;  1ZR6 A;  1W1O A;  1FIQ B;  2GQU A;  3NVV B;  4PVJ A;  4ML8 A;  2VFR A;  2QPM A;  3NVY B;  2Y08 A;  5FXF A;  1HSK A;  2UUU A;  3TSJ A;  2WDW A;  4BC7 A;  3RJA A;  3DQ0 A;  1W1R A;  2E3T A;  1N60 C;  5I1V A;  2NQW A;  1WVF A;  4PYT A;  2VAO A;  4JAY A;  5FXD A;  2O3G A;  4UD8 A;  2Q4W A;  3PQB A;  3D2H A;  4XLO A;  4O95 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...