1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
1AHZA 2OAIA 5ADZA 2VFTA 2VFRA 3NVZB 2QKNA 3W8WA 1WVEA 1E8HA 3LLBA 1ZR6A 3NRZB 1F0XA 1UXYA 2W55A 5FXDA 1N63C 4PWBA 3HRDC 3TSHA 1FIQB 4BC7A 4BBYA 1WVFA 2I0KA 3ETRB 3BW7A 3DEDA 1DZNA 2W3SA 2R8DA 1VDVA 4PZFA 1W1KA 2AXRA 1N60C 3AM9A 3NVVB 5HQXA 3LAEA 1N5WC 1V97A 1DIIA 3DQ0A 2BVFA 1AHVA 4MLAA 2O3GA 3KJMA 2PLIA 4PVEA 2EXRA 5HHZA 3TX1A 3W8ZA 1N5XA 2W3RA 2NQWA 3NS1B 3FW9A 4BCAA 1FFUC 3JS8A 3FW8A 1RM6B 4XLOA 4JAYA 3PM9A 4HG0A 1W1SA 1N62C 1I19A 5AE2A 4DNSA 2P3HA 3NVWB 1JROA 1T3QC 3S1EA 1N61C 5AE1A 5FXPA 3FWAA 3S1DA 2BVHA 1DIQA 2YVSA 5G5GB 1W1RA 2BVGA 4PYTA 1FO4A 1JRPA 1W1LA 2VAOA 2Q85A 4UD8A 3NVYB 1W1MA 5D79A 3S1FA 4ZOHB 1QLUA 3FW7A 1QLTA 1VAOA 2E3TA 2P13A 2GQTA 5AE3A 1W1JA 4JB1A 1WYGA 2QPMA 3I99A 1AHUA 5HMRA 1MBBA 2MBRA 2W54A 2VFSA 3SR6B 3AN1A 3GSYA 3D2HA 2Q4WA 1SB3B 2GQUA 2RK5A 1E8FA 5FXFA 3C0PA 1FFVC 3AMZA 4OALA 3VTEA 2VFVA 1MBTA 4PWCA 3D2JA 1E8GA 1W1QA 2P4PA 2VFUA 2R2ZA 4BC9A 1W1OA 3W8XA 1HSKA 1ZXIC 3EUB3 3TSJA 5FXEA 4O95A 3D2DA 4PVHA 4PVJA 2PLSA 3S1CA 4EC3A 4ML8A 1E0YA 5G5HB 3B9JB 4PVKA
chains in the Genus database with same CATH superfamily
1AHZA 2OAIA 5ADZA 2UUUA 2VFTA 2VFRA 3NVZB 2QKNA 3W8WA 1WVEA 1E8HA 3LLBA 1ZR6A 3NRZB 1F0XA 5L6FA 1UXYA 2W55A 5AWVA 5FXDA 1N63C 4PWBA 5I1WA 3PQBA 3HRDC 3TSHA 2Y3SA 1FIQB 4BC7A 4BBYA 1WVFA 2I0KA 3ETRB 3BW7A 3DEDA 1DZNA 3POPA 2W3SA 2R8DA 1VDVA 4PZFA 1W1KA 2AXRA 1N60C 3AM9A 3NVVB 5HQXA 3LAEA 1N5WC 1V97A 1DIIA 3DQ0A 2BVFA 1AHVA 4MLAA 2O3GA 3KJMA 3EJBB 2PLIA 4PVEA 2EXRA 5HHZA 3TX1A 3W8ZA 1N5XA 2W3RA 5L6GA 2NQWA 3NS1B 3FW9A 4BCAA 1FFUC 3JS8A 3FW8A 1RM6B 4XLOA 4JAYA 3PM9A 4HG0A 1W1SA 1N62C 1I19A 5AE2A 3NVWB 4DNSA 2P3HA 1JROA 3HSUA 1T3QC 3S1EA 1N61C 5AE1A 5FXPA 3FWAA 3S1DA 2BVHA 1DIQA 2YVSA 5G5GB 1W1RA 2IPIA 2BVGA 4PYTA 1FO4A 1JRPA 1W1LA 2VAOA 2Y3RA 2Q85A 3NVYB 4UD8A 2WDWA 1W1MA 5D79A 5K8EA 3S1FA 4ZOHB 1QLUA 3FW7A 1QLTA 1VAOA 2E3TA 3EJEB 2P13A 5I1VA 2GQTA 5AE3A 1W1JA 3RJ8A 4JB1A 1WYGA 2QPMA 3I99A 1AHUA 5HMRA 1MBBA 2MBRA 2W54A 2VFSA 3SR6B 3AN1A 3RJAA 3GSYA 3D2HA 2Q4WA 1SB3B 2Y4GA 2GQUA 2RK5A 1E8FA 5FXFA 3C0PA 1FFVC 3AMZA 4OALA 3VTEA 2VFVA 1MBTA 4PWCA 3D2JA 1E8GA 1W1QA 2P4PA 2VFUA 2R2ZA 2UUVA 4BC9A 1W1OA 3W8XA 1HSKA 1ZXIC 3EUB3 3TSJA 5FXEA 4O95A 3D2DA 4PVHA 4PVJA 2Y08A 2PLSA 3S1CA 4EC3A 4ML8A 3EJDB 1E0YA 5G5HB 3B9JB 4PVKA
chains in the Genus database with same CATH topology
1AHZA 2OAIA 5ADZA 2UUUA 2VFTA 2VFRA 3NVZB 2QKNA 3W8WA 1WVEA 1E8HA 3LLBA 1ZR6A 3NRZB 1F0XA 5L6FA 1UXYA 2W55A 5AWVA 5FXDA 1N63C 4PWBA 5I1WA 3PQBA 3HRDC 3TSHA 2Y3SA 1FIQB 4BC7A 4BBYA 1WVFA 2I0KA 3ETRB 3BW7A 3DEDA 1DZNA 3POPA 2W3SA 2R8DA 1VDVA 4PZFA 1W1KA 2AXRA 1N60C 3AM9A 3NVVB 5HQXA 3LAEA 1N5WC 1V97A 1DIIA 3DQ0A 2BVFA 1AHVA 4MLAA 2O3GA 3KJMA 2PLIA 4PVEA 2EXRA 5HHZA 3TX1A 3W8ZA 1N5XA 2W3RA 5L6GA 2NQWA 3NS1B 3FW9A 4BCAA 1FFUC 3JS8A 3FW8A 1RM6B 4XLOA 4JAYA 3PM9A 4HG0A 1W1SA 1N62C 1I19A 5AE2A 4DNSA 2P3HA 3HSUA 1JROA 3NVWB 1T3QC 3S1EA 1N61C 5AE1A 5FXPA 3FWAA 3S1DA 2BVHA 1DIQA 2YVSA 5G5GB 1W1RA 2IPIA 2BVGA 4PYTA 1FO4A 1JRPA 1W1LA 2VAOA 2Y3RA 2Q85A 4UD8A 2WDWA 3NVYB 1W1MA 5D79A 5K8EA 3S1FA 4ZOHB 1QLUA 3FW7A 1QLTA 1VAOA 2E3TA 2P13A 5I1VA 2GQTA 5AE3A 1W1JA 3RJ8A 4JB1A 1WYGA 2QPMA 3I99A 1AHUA 5HMRA 1MBBA 2MBRA 2W54A 2VFSA 3SR6B 3AN1A 3RJAA 3GSYA 3D2HA 2Q4WA 1SB3B 2Y4GA 2GQUA 2RK5A 1E8FA 5FXFA 3C0PA 1FFVC 3AMZA 4OALA 3VTEA 2VFVA 1MBTA 4PWCA 3D2JA 1E8GA 1W1QA 2P4PA 2VFUA 2R2ZA 2UUVA 4BC9A 1W1OA 3W8XA 1HSKA 1ZXIC 3EUB3 3TSJA 5FXEA 4O95A 3D2DA 4PVHA 4PVJA 2Y08A 2PLSA 3S1CA 4EC3A 4ML8A 1E0YA 5G5HB 3B9JB 4PVKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHZ A;  2OAI A;  5ADZ A;  2VFT A;  2VFR A;  3NVZ B;  2QKN A;  3W8W A;  1WVE A;  1E8H A;  3LLB A;  1ZR6 A;  3NRZ B;  1F0X A;  1UXY A;  2W55 A;  5FXD A;  1N63 C;  4PWB A;  3HRD C;  3TSH A;  1FIQ B;  4BC7 A;  4BBY A;  1WVF A;  2I0K A;  3ETR B;  3BW7 A;  3DED A;  1DZN A;  2W3S A;  2R8D A;  1VDV A;  4PZF A;  1W1K A;  2AXR A;  1N60 C;  3AM9 A;  3NVV B;  5HQX A;  3LAE A;  1N5W C;  1V97 A;  1DII A;  3DQ0 A;  2BVF A;  1AHV A;  4MLA A;  2O3G A;  3KJM A;  2PLI A;  4PVE A;  2EXR A;  5HHZ A;  3TX1 A;  3W8Z A;  1N5X A;  2W3R A;  2NQW A;  3NS1 B;  3FW9 A;  4BCA A;  1FFU C;  3JS8 A;  3FW8 A;  1RM6 B;  4XLO A;  4JAY A;  3PM9 A;  4HG0 A;  1W1S A;  1N62 C;  1I19 A;  5AE2 A;  4DNS A;  2P3H A;  3NVW B;  1JRO A;  1T3Q C;  3S1E A;  1N61 C;  5AE1 A;  5FXP A;  3FWA A;  3S1D A;  2BVH A;  1DIQ A;  2YVS A;  5G5G B;  1W1R A;  2BVG A;  4PYT A;  1FO4 A;  1JRP A;  1W1L A;  2VAO A;  2Q85 A;  4UD8 A;  3NVY B;  1W1M A;  5D79 A;  3S1F A;  4ZOH B;  1QLU A;  3FW7 A;  1QLT A;  1VAO A;  2E3T A;  2P13 A;  2GQT A;  5AE3 A;  1W1J A;  4JB1 A;  1WYG A;  2QPM A;  3I99 A;  1AHU A;  5HMR A;  1MBB A;  2MBR A;  2W54 A;  2VFS A;  3SR6 B;  3AN1 A;  3GSY A;  3D2H A;  2Q4W A;  1SB3 B;  2GQU A;  2RK5 A;  1E8F A;  5FXF A;  3C0P A;  1FFV C;  3AMZ A;  4OAL A;  3VTE A;  2VFV A;  1MBT A;  4PWC A;  3D2J A;  1E8G A;  1W1Q A;  2P4P A;  2VFU A;  2R2Z A;  4BC9 A;  1W1O A;  3W8X A;  1HSK A;  1ZXI C;  3EUB 3;  3TSJ A;  5FXE A;  4O95 A;  3D2D A;  4PVH A;  4PVJ A;  2PLS A;  3S1C A;  4EC3 A;  4ML8 A;  1E0Y A;  5G5H B;  3B9J B;  4PVK A; 
#chains in the Genus database with same CATH topology
 1AHZ A;  2OAI A;  5ADZ A;  2UUU A;  2VFT A;  2VFR A;  3NVZ B;  2QKN A;  3W8W A;  1WVE A;  1E8H A;  3LLB A;  1ZR6 A;  3NRZ B;  1F0X A;  5L6F A;  1UXY A;  2W55 A;  5AWV A;  5FXD A;  1N63 C;  4PWB A;  5I1W A;  3PQB A;  3HRD C;  3TSH A;  2Y3S A;  1FIQ B;  4BC7 A;  4BBY A;  1WVF A;  2I0K A;  3ETR B;  3BW7 A;  3DED A;  1DZN A;  3POP A;  2W3S A;  2R8D A;  1VDV A;  4PZF A;  1W1K A;  2AXR A;  1N60 C;  3AM9 A;  3NVV B;  5HQX A;  3LAE A;  1N5W C;  1V97 A;  1DII A;  3DQ0 A;  2BVF A;  1AHV A;  4MLA A;  2O3G A;  3KJM A;  3EJB B;  2PLI A;  4PVE A;  2EXR A;  5HHZ A;  3TX1 A;  3W8Z A;  1N5X A;  2W3R A;  5L6G A;  2NQW A;  3NS1 B;  3FW9 A;  4BCA A;  1FFU C;  3JS8 A;  3FW8 A;  1RM6 B;  4XLO A;  4JAY A;  3PM9 A;  4HG0 A;  1W1S A;  1N62 C;  1I19 A;  5AE2 A;  3NVW B;  4DNS A;  2P3H A;  1JRO A;  3HSU A;  1T3Q C;  3S1E A;  1N61 C;  5AE1 A;  5FXP A;  3FWA A;  3S1D A;  2BVH A;  1DIQ A;  2YVS A;  5G5G B;  1W1R A;  2IPI A;  2BVG A;  4PYT A;  1FO4 A;  1JRP A;  1W1L A;  2VAO A;  2Y3R A;  2Q85 A;  3NVY B;  4UD8 A;  2WDW A;  1W1M A;  5D79 A;  5K8E A;  3S1F A;  4ZOH B;  1QLU A;  3FW7 A;  1QLT A;  1VAO A;  2E3T A;  3EJE B;  2P13 A;  5I1V A;  2GQT A;  5AE3 A;  1W1J A;  3RJ8 A;  4JB1 A;  1WYG A;  2QPM A;  3I99 A;  1AHU A;  5HMR A;  1MBB A;  2MBR A;  2W54 A;  2VFS A;  3SR6 B;  3AN1 A;  3RJA A;  3GSY A;  3D2H A;  2Q4W A;  1SB3 B;  2Y4G A;  2GQU A;  2RK5 A;  1E8F A;  5FXF A;  3C0P A;  1FFV C;  3AMZ A;  4OAL A;  3VTE A;  2VFV A;  1MBT A;  4PWC A;  3D2J A;  1E8G A;  1W1Q A;  2P4P A;  2VFU A;  2R2Z A;  2UUV A;  4BC9 A;  1W1O A;  3W8X A;  1HSK A;  1ZXI C;  3EUB 3;  3TSJ A;  5FXE A;  4O95 A;  3D2D A;  4PVH A;  4PVJ A;  2Y08 A;  2PLS A;  3S1C A;  4EC3 A;  4ML8 A;  3EJD B;  1E0Y A;  5G5H B;  3B9J B;  4PVK A; 
#chains in the Genus database with same CATH homology
 1AHZ A;  2OAI A;  5ADZ A;  2UUU A;  2VFT A;  2VFR A;  3NVZ B;  2QKN A;  3W8W A;  1WVE A;  1E8H A;  3LLB A;  1ZR6 A;  3NRZ B;  1F0X A;  5L6F A;  1UXY A;  2W55 A;  5AWV A;  5FXD A;  1N63 C;  4PWB A;  5I1W A;  3PQB A;  3HRD C;  3TSH A;  2Y3S A;  1FIQ B;  4BC7 A;  4BBY A;  1WVF A;  2I0K A;  3ETR B;  3BW7 A;  3DED A;  1DZN A;  3POP A;  2W3S A;  2R8D A;  1VDV A;  4PZF A;  1W1K A;  2AXR A;  1N60 C;  3AM9 A;  3NVV B;  5HQX A;  3LAE A;  1N5W C;  1V97 A;  1DII A;  3DQ0 A;  2BVF A;  1AHV A;  4MLA A;  2O3G A;  3KJM A;  2PLI A;  4PVE A;  2EXR A;  5HHZ A;  3TX1 A;  3W8Z A;  1N5X A;  2W3R A;  5L6G A;  2NQW A;  3NS1 B;  3FW9 A;  4BCA A;  1FFU C;  3JS8 A;  3FW8 A;  1RM6 B;  4XLO A;  4JAY A;  3PM9 A;  4HG0 A;  1W1S A;  1N62 C;  1I19 A;  5AE2 A;  4DNS A;  2P3H A;  3HSU A;  1JRO A;  3NVW B;  1T3Q C;  3S1E A;  1N61 C;  5AE1 A;  5FXP A;  3FWA A;  3S1D A;  2BVH A;  1DIQ A;  2YVS A;  5G5G B;  1W1R A;  2IPI A;  2BVG A;  4PYT A;  1FO4 A;  1JRP A;  1W1L A;  2VAO A;  2Y3R A;  2Q85 A;  4UD8 A;  2WDW A;  3NVY B;  1W1M A;  5D79 A;  5K8E A;  3S1F A;  4ZOH B;  1QLU A;  3FW7 A;  1QLT A;  1VAO A;  2E3T A;  2P13 A;  5I1V A;  2GQT A;  5AE3 A;  1W1J A;  3RJ8 A;  4JB1 A;  1WYG A;  2QPM A;  3I99 A;  1AHU A;  5HMR A;  1MBB A;  2MBR A;  2W54 A;  2VFS A;  3SR6 B;  3AN1 A;  3RJA A;  3GSY A;  3D2H A;  2Q4W A;  1SB3 B;  2Y4G A;  2GQU A;  2RK5 A;  1E8F A;  5FXF A;  3C0P A;  1FFV C;  3AMZ A;  4OAL A;  3VTE A;  2VFV A;  1MBT A;  4PWC A;  3D2J A;  1E8G A;  1W1Q A;  2P4P A;  2VFU A;  2R2Z A;  2UUV A;  4BC9 A;  1W1O A;  3W8X A;  1HSK A;  1ZXI C;  3EUB 3;  3TSJ A;  5FXE A;  4O95 A;  3D2D A;  4PVH A;  4PVJ A;  2Y08 A;  2PLS A;  3S1C A;  4EC3 A;  4ML8 A;  1E0Y A;  5G5H B;  3B9J B;  4PVK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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