1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
2VFRA 5FXPA 2W3SA 1QLUA 3KJMA 3GSYA 3S1CA 4JB1A 4PWBA 1AHUA 1DIIA 2P3HA 3NS1B 2Q85A 2BVGA 2Q4WA 2YVSA 2R2ZA 1ZR6A 1WYGA 3AM9A 3LAEA 1N63C 1W1JA 1FFUC 1QLTA 5HQXA 1WVEA 3BW7A 1W1MA 3D2HA 4BC9A 1FIQB 1W1SA 3D2JA 3TSHA 3AMZA 4ML8A 1FFVC 2VFVA 2GQTA 1MBTA 2P4PA 1E8HA 2BVHA 5G5HB 1VDVA 4PVEA 2PLSA 4PYTA 1ZXIC 1RM6B 1W1LA 3NVVB 2VFUA 5AE3A 3NVYB 3DEDA 1E8FA 2MBRA 1W1QA 4UD8A 1I19A 1SB3B 5AE1A 3S1FA 1HSKA 1V97A 2W54A 2I0KA 3FW7A 4ZOHB 5HHZA 2VAOA 4BCAA 1W1KA 3FW8A 1FO4A 2EXRA 3TSJA 2OAIA 1F0XA 2R8DA 1AHZA 3S1DA 1DZNA 1N61C 1VAOA 5FXFA 2O3GA 3D2DA 2PLIA 3HRDC 1W1RA 2E3TA 3SR6B 5FXDA 3DQ0A 3ETRB 1UXYA 3C0PA 4PVKA 3W8XA 1JROA 2QKNA 2BVFA 1N5WC 3NVWB 5D79A 1WVFA 3NVZB 3NRZB 2VFTA 2RK5A 3FWAA 4HG0A 4EC3A 1N60C 2NQWA 3JS8A 1T3QC 1W1OA 2AXRA 3S1EA 3W8WA 1E8GA 2GQUA 4PVJA 5HMRA 5G5GB 4OALA 1N5XA 4PVHA 2W55A 3EUB3 2P13A 3TX1A 3I99A 5AE2A 1JRPA 4O95A 1AHVA 4XLOA 4PWCA 3LLBA 1MBBA 3AN1A 1DIQA 5FXEA 4MLAA 1E0YA 3FW9A 5ADZA 1N62C 3B9JB 2QPMA 4BBYA 3VTEA 3W8ZA 2VFSA 4PZFA 4JAYA 2W3RA 3PM9A 4BC7A 4DNSA
chains in the Genus database with same CATH superfamily
2VFRA 5FXPA 2W3SA 1QLUA 3KJMA 3EJEB 3GSYA 3S1CA 4JB1A 4PWBA 1AHUA 1DIIA 2P3HA 3NS1B 2Q85A 2BVGA 2Q4WA 2YVSA 2R2ZA 1ZR6A 1WYGA 3AM9A 3LAEA 1N63C 3RJAA 1W1JA 1FFUC 1QLTA 5HQXA 1WVEA 3BW7A 1W1MA 3D2HA 4BC9A 1FIQB 1W1SA 3D2JA 3TSHA 2UUVA 3AMZA 4ML8A 3PQBA 1FFVC 2VFVA 2GQTA 1MBTA 2P4PA 1E8HA 2BVHA 5G5HB 1VDVA 4PVEA 2PLSA 2WDWA 4PYTA 1ZXIC 1RM6B 1W1LA 3NVVB 2VFUA 5AE3A 3NVYB 3DEDA 1E8FA 2MBRA 1W1QA 4UD8A 5L6FA 1I19A 1SB3B 5AE1A 3S1FA 1HSKA 1V97A 2W54A 2I0KA 3FW7A 4ZOHB 5AWVA 5HHZA 2VAOA 4BCAA 1W1KA 3FW8A 2IPIA 1FO4A 2EXRA 3TSJA 2OAIA 1F0XA 2R8DA 1AHZA 3S1DA 1DZNA 1N61C 1VAOA 5FXFA 2O3GA 3D2DA 2PLIA 3HRDC 1W1RA 2E3TA 3SR6B 2Y08A 5I1WA 5FXDA 3DQ0A 3ETRB 1UXYA 3C0PA 4PVKA 3W8XA 1JROA 2QKNA 2BVFA 1N5WC 3NVWB 5D79A 1WVFA 3NVZB 3NRZB 2VFTA 2RK5A 3FWAA 4HG0A 4EC3A 1N60C 2NQWA 3JS8A 1T3QC 1W1OA 2AXRA 3S1EA 3W8WA 2Y3SA 1E8GA 2GQUA 3EJDB 4PVJA 5HMRA 5G5GB 4OALA 2Y4GA 1N5XA 4PVHA 2W55A 3EUB3 2P13A 3TX1A 3EJBB 3I99A 5AE2A 1JRPA 4O95A 1AHVA 4XLOA 4PWCA 2UUUA 5I1VA 3LLBA 1MBBA 3AN1A 1DIQA 5FXEA 4MLAA 1E0YA 3FW9A 5ADZA 1N62C 5K8EA 3POPA 3B9JB 2QPMA 4BBYA 3VTEA 2Y3RA 3W8ZA 2VFSA 4PZFA 4JAYA 3HSUA 2W3RA 3RJ8A 3PM9A 4BC7A 4DNSA 5L6GA
chains in the Genus database with same CATH topology
2VFRA 5FXPA 2W3SA 1QLUA 3KJMA 3GSYA 3S1CA 4JB1A 4PWBA 1AHUA 1DIIA 2P3HA 3NS1B 2Q85A 2BVGA 2Q4WA 2YVSA 2R2ZA 1ZR6A 1WYGA 3AM9A 3LAEA 1N63C 3RJAA 1W1JA 1FFUC 1QLTA 5HQXA 1WVEA 3BW7A 1W1MA 3D2HA 4BC9A 1FIQB 1W1SA 3D2JA 3TSHA 2UUVA 3AMZA 4ML8A 3PQBA 1FFVC 2VFVA 2GQTA 1MBTA 2P4PA 1E8HA 2BVHA 5G5HB 1VDVA 4PVEA 2PLSA 2WDWA 4PYTA 1ZXIC 1RM6B 1W1LA 3NVVB 2VFUA 5AE3A 3NVYB 3DEDA 1E8FA 2MBRA 1W1QA 4UD8A 5L6FA 1I19A 1SB3B 5AE1A 3S1FA 1HSKA 1V97A 2W54A 2I0KA 3FW7A 4ZOHB 5AWVA 5HHZA 2VAOA 4BCAA 1W1KA 3FW8A 2IPIA 1FO4A 2EXRA 3TSJA 2OAIA 1F0XA 2R8DA 1AHZA 3S1DA 1DZNA 1N61C 1VAOA 5FXFA 2O3GA 3D2DA 2PLIA 3HRDC 1W1RA 2E3TA 3SR6B 2Y08A 5I1WA 5FXDA 3DQ0A 3ETRB 1UXYA 3C0PA 4PVKA 3W8XA 1JROA 2QKNA 2BVFA 1N5WC 3NVWB 5D79A 1WVFA 3NVZB 3NRZB 2VFTA 2RK5A 3FWAA 4HG0A 4EC3A 1N60C 2NQWA 3JS8A 1T3QC 1W1OA 2AXRA 3S1EA 3W8WA 2Y3SA 1E8GA 2GQUA 4PVJA 5HMRA 5G5GB 4OALA 2Y4GA 1N5XA 4PVHA 2W55A 3EUB3 2P13A 3TX1A 3I99A 5AE2A 1JRPA 4O95A 1AHVA 4XLOA 4PWCA 2UUUA 5I1VA 3LLBA 1MBBA 3AN1A 1DIQA 5FXEA 4MLAA 1E0YA 3FW9A 5ADZA 1N62C 5K8EA 3POPA 3B9JB 2QPMA 4BBYA 3VTEA 2Y3RA 3W8ZA 2VFSA 4PZFA 4JAYA 3HSUA 2W3RA 3RJ8A 3PM9A 4BC7A 4DNSA 5L6GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFR A;  5FXP A;  2W3S A;  1QLU A;  3KJM A;  3GSY A;  3S1C A;  4JB1 A;  4PWB A;  1AHU A;  1DII A;  2P3H A;  3NS1 B;  2Q85 A;  2BVG A;  2Q4W A;  2YVS A;  2R2Z A;  1ZR6 A;  1WYG A;  3AM9 A;  3LAE A;  1N63 C;  1W1J A;  1FFU C;  1QLT A;  5HQX A;  1WVE A;  3BW7 A;  1W1M A;  3D2H A;  4BC9 A;  1FIQ B;  1W1S A;  3D2J A;  3TSH A;  3AMZ A;  4ML8 A;  1FFV C;  2VFV A;  2GQT A;  1MBT A;  2P4P A;  1E8H A;  2BVH A;  5G5H B;  1VDV A;  4PVE A;  2PLS A;  4PYT A;  1ZXI C;  1RM6 B;  1W1L A;  3NVV B;  2VFU A;  5AE3 A;  3NVY B;  3DED A;  1E8F A;  2MBR A;  1W1Q A;  4UD8 A;  1I19 A;  1SB3 B;  5AE1 A;  3S1F A;  1HSK A;  1V97 A;  2W54 A;  2I0K A;  3FW7 A;  4ZOH B;  5HHZ A;  2VAO A;  4BCA A;  1W1K A;  3FW8 A;  1FO4 A;  2EXR A;  3TSJ A;  2OAI A;  1F0X A;  2R8D A;  1AHZ A;  3S1D A;  1DZN A;  1N61 C;  1VAO A;  5FXF A;  2O3G A;  3D2D A;  2PLI A;  3HRD C;  1W1R A;  2E3T A;  3SR6 B;  5FXD A;  3DQ0 A;  3ETR B;  1UXY A;  3C0P A;  4PVK A;  3W8X A;  1JRO A;  2QKN A;  2BVF A;  1N5W C;  3NVW B;  5D79 A;  1WVF A;  3NVZ B;  3NRZ B;  2VFT A;  2RK5 A;  3FWA A;  4HG0 A;  4EC3 A;  1N60 C;  2NQW A;  3JS8 A;  1T3Q C;  1W1O A;  2AXR A;  3S1E A;  3W8W A;  1E8G A;  2GQU A;  4PVJ A;  5HMR A;  5G5G B;  4OAL A;  1N5X A;  4PVH A;  2W55 A;  3EUB 3;  2P13 A;  3TX1 A;  3I99 A;  5AE2 A;  1JRP A;  4O95 A;  1AHV A;  4XLO A;  4PWC A;  3LLB A;  1MBB A;  3AN1 A;  1DIQ A;  5FXE A;  4MLA A;  1E0Y A;  3FW9 A;  5ADZ A;  1N62 C;  3B9J B;  2QPM A;  4BBY A;  3VTE A;  3W8Z A;  2VFS A;  4PZF A;  4JAY A;  2W3R A;  3PM9 A;  4BC7 A;  4DNS A; 
#chains in the Genus database with same CATH topology
 2VFR A;  5FXP A;  2W3S A;  1QLU A;  3KJM A;  3EJE B;  3GSY A;  3S1C A;  4JB1 A;  4PWB A;  1AHU A;  1DII A;  2P3H A;  3NS1 B;  2Q85 A;  2BVG A;  2Q4W A;  2YVS A;  2R2Z A;  1ZR6 A;  1WYG A;  3AM9 A;  3LAE A;  1N63 C;  3RJA A;  1W1J A;  1FFU C;  1QLT A;  5HQX A;  1WVE A;  3BW7 A;  1W1M A;  3D2H A;  4BC9 A;  1FIQ B;  1W1S A;  3D2J A;  3TSH A;  2UUV A;  3AMZ A;  4ML8 A;  3PQB A;  1FFV C;  2VFV A;  2GQT A;  1MBT A;  2P4P A;  1E8H A;  2BVH A;  5G5H B;  1VDV A;  4PVE A;  2PLS A;  2WDW A;  4PYT A;  1ZXI C;  1RM6 B;  1W1L A;  3NVV B;  2VFU A;  5AE3 A;  3NVY B;  3DED A;  1E8F A;  2MBR A;  1W1Q A;  4UD8 A;  5L6F A;  1I19 A;  1SB3 B;  5AE1 A;  3S1F A;  1HSK A;  1V97 A;  2W54 A;  2I0K A;  3FW7 A;  4ZOH B;  5AWV A;  5HHZ A;  2VAO A;  4BCA A;  1W1K A;  3FW8 A;  2IPI A;  1FO4 A;  2EXR A;  3TSJ A;  2OAI A;  1F0X A;  2R8D A;  1AHZ A;  3S1D A;  1DZN A;  1N61 C;  1VAO A;  5FXF A;  2O3G A;  3D2D A;  2PLI A;  3HRD C;  1W1R A;  2E3T A;  3SR6 B;  2Y08 A;  5I1W A;  5FXD A;  3DQ0 A;  3ETR B;  1UXY A;  3C0P A;  4PVK A;  3W8X A;  1JRO A;  2QKN A;  2BVF A;  1N5W C;  3NVW B;  5D79 A;  1WVF A;  3NVZ B;  3NRZ B;  2VFT A;  2RK5 A;  3FWA A;  4HG0 A;  4EC3 A;  1N60 C;  2NQW A;  3JS8 A;  1T3Q C;  1W1O A;  2AXR A;  3S1E A;  3W8W A;  2Y3S A;  1E8G A;  2GQU A;  3EJD B;  4PVJ A;  5HMR A;  5G5G B;  4OAL A;  2Y4G A;  1N5X A;  4PVH A;  2W55 A;  3EUB 3;  2P13 A;  3TX1 A;  3EJB B;  3I99 A;  5AE2 A;  1JRP A;  4O95 A;  1AHV A;  4XLO A;  4PWC A;  2UUU A;  5I1V A;  3LLB A;  1MBB A;  3AN1 A;  1DIQ A;  5FXE A;  4MLA A;  1E0Y A;  3FW9 A;  5ADZ A;  1N62 C;  5K8E A;  3POP A;  3B9J B;  2QPM A;  4BBY A;  3VTE A;  2Y3R A;  3W8Z A;  2VFS A;  4PZF A;  4JAY A;  3HSU A;  2W3R A;  3RJ8 A;  3PM9 A;  4BC7 A;  4DNS A;  5L6G A; 
#chains in the Genus database with same CATH homology
 2VFR A;  5FXP A;  2W3S A;  1QLU A;  3KJM A;  3GSY A;  3S1C A;  4JB1 A;  4PWB A;  1AHU A;  1DII A;  2P3H A;  3NS1 B;  2Q85 A;  2BVG A;  2Q4W A;  2YVS A;  2R2Z A;  1ZR6 A;  1WYG A;  3AM9 A;  3LAE A;  1N63 C;  3RJA A;  1W1J A;  1FFU C;  1QLT A;  5HQX A;  1WVE A;  3BW7 A;  1W1M A;  3D2H A;  4BC9 A;  1FIQ B;  1W1S A;  3D2J A;  3TSH A;  2UUV A;  3AMZ A;  4ML8 A;  3PQB A;  1FFV C;  2VFV A;  2GQT A;  1MBT A;  2P4P A;  1E8H A;  2BVH A;  5G5H B;  1VDV A;  4PVE A;  2PLS A;  2WDW A;  4PYT A;  1ZXI C;  1RM6 B;  1W1L A;  3NVV B;  2VFU A;  5AE3 A;  3NVY B;  3DED A;  1E8F A;  2MBR A;  1W1Q A;  4UD8 A;  5L6F A;  1I19 A;  1SB3 B;  5AE1 A;  3S1F A;  1HSK A;  1V97 A;  2W54 A;  2I0K A;  3FW7 A;  4ZOH B;  5AWV A;  5HHZ A;  2VAO A;  4BCA A;  1W1K A;  3FW8 A;  2IPI A;  1FO4 A;  2EXR A;  3TSJ A;  2OAI A;  1F0X A;  2R8D A;  1AHZ A;  3S1D A;  1DZN A;  1N61 C;  1VAO A;  5FXF A;  2O3G A;  3D2D A;  2PLI A;  3HRD C;  1W1R A;  2E3T A;  3SR6 B;  2Y08 A;  5I1W A;  5FXD A;  3DQ0 A;  3ETR B;  1UXY A;  3C0P A;  4PVK A;  3W8X A;  1JRO A;  2QKN A;  2BVF A;  1N5W C;  3NVW B;  5D79 A;  1WVF A;  3NVZ B;  3NRZ B;  2VFT A;  2RK5 A;  3FWA A;  4HG0 A;  4EC3 A;  1N60 C;  2NQW A;  3JS8 A;  1T3Q C;  1W1O A;  2AXR A;  3S1E A;  3W8W A;  2Y3S A;  1E8G A;  2GQU A;  4PVJ A;  5HMR A;  5G5G B;  4OAL A;  2Y4G A;  1N5X A;  4PVH A;  2W55 A;  3EUB 3;  2P13 A;  3TX1 A;  3I99 A;  5AE2 A;  1JRP A;  4O95 A;  1AHV A;  4XLO A;  4PWC A;  2UUU A;  5I1V A;  3LLB A;  1MBB A;  3AN1 A;  1DIQ A;  5FXE A;  4MLA A;  1E0Y A;  3FW9 A;  5ADZ A;  1N62 C;  5K8E A;  3POP A;  3B9J B;  2QPM A;  4BBY A;  3VTE A;  2Y3R A;  3W8Z A;  2VFS A;  4PZF A;  4JAY A;  3HSU A;  2W3R A;  3RJ8 A;  3PM9 A;  4BC7 A;  4DNS A;  5L6G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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