1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavoenzyme
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
3ETRB 2PLIA 3D2HA 2QPMA 5ADZA 5FXEA 1FIQB 4BBYA 4PVJA 4DNSA 4BC9A 2VFSA 1DZNA 5HHZA 4PVHA 1RM6B 5HMRA 4JB1A 1W1OA 3S1FA 5FXDA 1DIIA 1UXYA 2BVGA 3NRZB 2E3TA 3BW7A 1JROA 1N60C 3NS1B 2VFTA 2VFUA 4PYTA 3W8ZA 4PVEA 5HQXA 2OAIA 2P3HA 3S1DA 1N5XA 4O95A 3EUB3 1VAOA 4ML8A 1N61C 1N62C 1E0YA 5D79A 1JRPA 2VAOA 3AN1A 2W3RA 1FFVC 1N63C 3D2JA 2VFRA 1N5WC 1MBBA 1E8FA 1MBTA 3AMZA 1VDVA 3NVWB 2W55A 3I99A 1SB3B 5AE1A 2PLSA 2O3GA 4PVKA 2BVFA 1FO4A 3B9JB 1F0XA 3S1CA 2GQUA 3S1EA 2GQTA 2P4PA 1W1SA 3PM9A 2AXRA 3W8XA 4PZFA 3FW8A 3FWAA 1ZR6A 4PWBA 3DQ0A 1AHVA 1E8HA 1WVEA 2VFVA 4XLOA 3LLBA 4BC7A 3KJMA 1QLUA 1HSKA 4JAYA 1V97A 3TSJA 2YVSA 2QKNA 2R8DA 1W1QA 1W1MA 3JS8A 1I19A 4UD8A 3W8WA 1AHUA 1QLTA 4BCAA 3FW7A 5AE3A 2P13A 3GSYA 4PWCA 5FXFA 4EC3A 2MBRA 1FFUC 3NVYB 2Q85A 5G5HB 3HRDC 1DIQA 2BVHA 3NVZB 1AHZA 5FXPA 2R2ZA 3VTEA 2W3SA 1W1KA 3C0PA 5G5GB 1W1LA 3DEDA 3FW9A 1T3QC 2W54A 4MLAA 4OALA 3TSHA 2EXRA 5AE2A 3D2DA 2Q4WA 3NVVB 1W1JA 3AM9A 1E8GA 2I0KA 1WYGA 2RK5A 3TX1A 3LAEA 2NQWA 1ZXIC 3SR6B 4HG0A 1WVFA 1W1RA 4ZOHB
chains in the Genus database with same CATH superfamily
3ETRB 2PLIA 2WDWA 3D2HA 2QPMA 3RJ8A 5L6GA 5ADZA 5FXEA 1FIQB 3RJAA 4BBYA 4PVJA 2Y3RA 4DNSA 4BC9A 2VFSA 1DZNA 5HHZA 4PVHA 1RM6B 5HMRA 4JB1A 1W1OA 3S1FA 5FXDA 1DIIA 1UXYA 2BVGA 2Y08A 3NRZB 2E3TA 3BW7A 1JROA 5K8EA 1N60C 3NS1B 2VFTA 2Y4GA 2VFUA 3EJDB 4PYTA 3W8ZA 4PVEA 5HQXA 2IPIA 2OAIA 2P3HA 3S1DA 1N5XA 4O95A 3EUB3 1VAOA 4ML8A 1N61C 1N62C 1E0YA 5D79A 1JRPA 2VAOA 3AN1A 2W3RA 1FFVC 1N63C 3D2JA 2VFRA 1N5WC 1MBBA 1E8FA 3SR6B 2UUUA 1MBTA 3AMZA 1VDVA 3NVWB 2W55A 3I99A 1SB3B 5AE1A 2PLSA 2O3GA 4PVKA 2BVFA 1FO4A 3B9JB 1F0XA 3S1CA 2GQUA 3S1EA 2GQTA 2P4PA 1W1SA 3PM9A 2AXRA 3W8XA 4PZFA 3HSUA 3FW8A 3FWAA 1ZR6A 4PWBA 3DQ0A 1AHVA 1E8HA 1WVEA 2VFVA 4XLOA 3LLBA 4BC7A 3KJMA 1QLUA 3POPA 1HSKA 4JAYA 1V97A 3TSJA 5L6FA 2YVSA 2QKNA 2R8DA 5I1WA 1W1QA 5I1VA 1W1MA 3JS8A 1I19A 4UD8A 3W8WA 1AHUA 1QLTA 4BCAA 2UUVA 3FW7A 5AE3A 2P13A 3GSYA 4PWCA 5FXFA 4EC3A 2MBRA 1FFUC 3NVYB 2Q85A 5G5HB 3HRDC 1DIQA 2BVHA 3NVZB 1AHZA 5FXPA 2R2ZA 3VTEA 2W3SA 1W1KA 3C0PA 5G5GB 1W1LA 3DEDA 3FW9A 3PQBA 2Y3SA 1T3QC 2W54A 5AWVA 4MLAA 4OALA 3TSHA 2EXRA 5AE2A 3D2DA 2Q4WA 3NVVB 1W1JA 3AM9A 1E8GA 2I0KA 1WYGA 2RK5A 3TX1A 3LAEA 2NQWA 1ZXIC 3EJBB 3EJEB 4HG0A 1WVFA 1W1RA 4ZOHB
chains in the Genus database with same CATH topology
3ETRB 2PLIA 2WDWA 3D2HA 2QPMA 3RJ8A 5L6GA 5ADZA 5FXEA 1FIQB 3RJAA 4BBYA 4PVJA 2Y3RA 4DNSA 4BC9A 2VFSA 1DZNA 5HHZA 4PVHA 1RM6B 5HMRA 4JB1A 1W1OA 3S1FA 5FXDA 1DIIA 1UXYA 2BVGA 2Y08A 3NRZB 2E3TA 3BW7A 1JROA 5K8EA 1N60C 3NS1B 2VFTA 2Y4GA 2VFUA 4PYTA 3W8ZA 4PVEA 5HQXA 2IPIA 2OAIA 2P3HA 3S1DA 1N5XA 4O95A 3EUB3 1VAOA 4ML8A 1N61C 1N62C 1E0YA 5D79A 1JRPA 2VAOA 3AN1A 2W3RA 1FFVC 1N63C 3D2JA 2VFRA 1N5WC 1MBBA 1E8FA 2UUUA 1MBTA 3AMZA 1VDVA 3NVWB 2W55A 3I99A 1SB3B 5AE1A 2PLSA 2O3GA 4PVKA 2BVFA 1FO4A 3B9JB 1F0XA 3S1CA 2GQUA 3S1EA 2GQTA 2P4PA 1W1SA 3PM9A 2AXRA 3W8XA 4PZFA 3HSUA 3FW8A 3FWAA 1ZR6A 4PWBA 3DQ0A 1AHVA 1E8HA 1WVEA 2VFVA 4XLOA 3LLBA 4BC7A 3KJMA 1QLUA 3POPA 1HSKA 4JAYA 1V97A 3TSJA 5L6FA 2YVSA 2QKNA 2R8DA 5I1WA 1W1QA 5I1VA 1W1MA 3JS8A 1I19A 4UD8A 3W8WA 1AHUA 1QLTA 4BCAA 2UUVA 3FW7A 5AE3A 2P13A 3GSYA 4PWCA 5FXFA 4EC3A 2MBRA 1FFUC 3NVYB 2Q85A 5G5HB 3HRDC 1DIQA 2BVHA 3NVZB 1AHZA 5FXPA 2R2ZA 3VTEA 2W3SA 1W1KA 3C0PA 5G5GB 1W1LA 3DEDA 3FW9A 3PQBA 2Y3SA 1T3QC 2W54A 5AWVA 4MLAA 4OALA 3TSHA 2EXRA 5AE2A 3D2DA 2Q4WA 3NVVB 1W1JA 3AM9A 1E8GA 2I0KA 1WYGA 2RK5A 3TX1A 3LAEA 2NQWA 1ZXIC 3SR6B 4HG0A 1WVFA 1W1RA 4ZOHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ETR B;  2PLI A;  3D2H A;  2QPM A;  5ADZ A;  5FXE A;  1FIQ B;  4BBY A;  4PVJ A;  4DNS A;  4BC9 A;  2VFS A;  1DZN A;  5HHZ A;  4PVH A;  1RM6 B;  5HMR A;  4JB1 A;  1W1O A;  3S1F A;  5FXD A;  1DII A;  1UXY A;  2BVG A;  3NRZ B;  2E3T A;  3BW7 A;  1JRO A;  1N60 C;  3NS1 B;  2VFT A;  2VFU A;  4PYT A;  3W8Z A;  4PVE A;  5HQX A;  2OAI A;  2P3H A;  3S1D A;  1N5X A;  4O95 A;  3EUB 3;  1VAO A;  4ML8 A;  1N61 C;  1N62 C;  1E0Y A;  5D79 A;  1JRP A;  2VAO A;  3AN1 A;  2W3R A;  1FFV C;  1N63 C;  3D2J A;  2VFR A;  1N5W C;  1MBB A;  1E8F A;  1MBT A;  3AMZ A;  1VDV A;  3NVW B;  2W55 A;  3I99 A;  1SB3 B;  5AE1 A;  2PLS A;  2O3G A;  4PVK A;  2BVF A;  1FO4 A;  3B9J B;  1F0X A;  3S1C A;  2GQU A;  3S1E A;  2GQT A;  2P4P A;  1W1S A;  3PM9 A;  2AXR A;  3W8X A;  4PZF A;  3FW8 A;  3FWA A;  1ZR6 A;  4PWB A;  3DQ0 A;  1AHV A;  1E8H A;  1WVE A;  2VFV A;  4XLO A;  3LLB A;  4BC7 A;  3KJM A;  1QLU A;  1HSK A;  4JAY A;  1V97 A;  3TSJ A;  2YVS A;  2QKN A;  2R8D A;  1W1Q A;  1W1M A;  3JS8 A;  1I19 A;  4UD8 A;  3W8W A;  1AHU A;  1QLT A;  4BCA A;  3FW7 A;  5AE3 A;  2P13 A;  3GSY A;  4PWC A;  5FXF A;  4EC3 A;  2MBR A;  1FFU C;  3NVY B;  2Q85 A;  5G5H B;  3HRD C;  1DIQ A;  2BVH A;  3NVZ B;  1AHZ A;  5FXP A;  2R2Z A;  3VTE A;  2W3S A;  1W1K A;  3C0P A;  5G5G B;  1W1L A;  3DED A;  3FW9 A;  1T3Q C;  2W54 A;  4MLA A;  4OAL A;  3TSH A;  2EXR A;  5AE2 A;  3D2D A;  2Q4W A;  3NVV B;  1W1J A;  3AM9 A;  1E8G A;  2I0K A;  1WYG A;  2RK5 A;  3TX1 A;  3LAE A;  2NQW A;  1ZXI C;  3SR6 B;  4HG0 A;  1WVF A;  1W1R A;  4ZOH B; 
#chains in the Genus database with same CATH topology
 3ETR B;  2PLI A;  2WDW A;  3D2H A;  2QPM A;  3RJ8 A;  5L6G A;  5ADZ A;  5FXE A;  1FIQ B;  3RJA A;  4BBY A;  4PVJ A;  2Y3R A;  4DNS A;  4BC9 A;  2VFS A;  1DZN A;  5HHZ A;  4PVH A;  1RM6 B;  5HMR A;  4JB1 A;  1W1O A;  3S1F A;  5FXD A;  1DII A;  1UXY A;  2BVG A;  2Y08 A;  3NRZ B;  2E3T A;  3BW7 A;  1JRO A;  5K8E A;  1N60 C;  3NS1 B;  2VFT A;  2Y4G A;  2VFU A;  3EJD B;  4PYT A;  3W8Z A;  4PVE A;  5HQX A;  2IPI A;  2OAI A;  2P3H A;  3S1D A;  1N5X A;  4O95 A;  3EUB 3;  1VAO A;  4ML8 A;  1N61 C;  1N62 C;  1E0Y A;  5D79 A;  1JRP A;  2VAO A;  3AN1 A;  2W3R A;  1FFV C;  1N63 C;  3D2J A;  2VFR A;  1N5W C;  1MBB A;  1E8F A;  3SR6 B;  2UUU A;  1MBT A;  3AMZ A;  1VDV A;  3NVW B;  2W55 A;  3I99 A;  1SB3 B;  5AE1 A;  2PLS A;  2O3G A;  4PVK A;  2BVF A;  1FO4 A;  3B9J B;  1F0X A;  3S1C A;  2GQU A;  3S1E A;  2GQT A;  2P4P A;  1W1S A;  3PM9 A;  2AXR A;  3W8X A;  4PZF A;  3HSU A;  3FW8 A;  3FWA A;  1ZR6 A;  4PWB A;  3DQ0 A;  1AHV A;  1E8H A;  1WVE A;  2VFV A;  4XLO A;  3LLB A;  4BC7 A;  3KJM A;  1QLU A;  3POP A;  1HSK A;  4JAY A;  1V97 A;  3TSJ A;  5L6F A;  2YVS A;  2QKN A;  2R8D A;  5I1W A;  1W1Q A;  5I1V A;  1W1M A;  3JS8 A;  1I19 A;  4UD8 A;  3W8W A;  1AHU A;  1QLT A;  4BCA A;  2UUV A;  3FW7 A;  5AE3 A;  2P13 A;  3GSY A;  4PWC A;  5FXF A;  4EC3 A;  2MBR A;  1FFU C;  3NVY B;  2Q85 A;  5G5H B;  3HRD C;  1DIQ A;  2BVH A;  3NVZ B;  1AHZ A;  5FXP A;  2R2Z A;  3VTE A;  2W3S A;  1W1K A;  3C0P A;  5G5G B;  1W1L A;  3DED A;  3FW9 A;  3PQB A;  2Y3S A;  1T3Q C;  2W54 A;  5AWV A;  4MLA A;  4OAL A;  3TSH A;  2EXR A;  5AE2 A;  3D2D A;  2Q4W A;  3NVV B;  1W1J A;  3AM9 A;  1E8G A;  2I0K A;  1WYG A;  2RK5 A;  3TX1 A;  3LAE A;  2NQW A;  1ZXI C;  3EJB B;  3EJE B;  4HG0 A;  1WVF A;  1W1R A;  4ZOH B; 
#chains in the Genus database with same CATH homology
 3ETR B;  2PLI A;  2WDW A;  3D2H A;  2QPM A;  3RJ8 A;  5L6G A;  5ADZ A;  5FXE A;  1FIQ B;  3RJA A;  4BBY A;  4PVJ A;  2Y3R A;  4DNS A;  4BC9 A;  2VFS A;  1DZN A;  5HHZ A;  4PVH A;  1RM6 B;  5HMR A;  4JB1 A;  1W1O A;  3S1F A;  5FXD A;  1DII A;  1UXY A;  2BVG A;  2Y08 A;  3NRZ B;  2E3T A;  3BW7 A;  1JRO A;  5K8E A;  1N60 C;  3NS1 B;  2VFT A;  2Y4G A;  2VFU A;  4PYT A;  3W8Z A;  4PVE A;  5HQX A;  2IPI A;  2OAI A;  2P3H A;  3S1D A;  1N5X A;  4O95 A;  3EUB 3;  1VAO A;  4ML8 A;  1N61 C;  1N62 C;  1E0Y A;  5D79 A;  1JRP A;  2VAO A;  3AN1 A;  2W3R A;  1FFV C;  1N63 C;  3D2J A;  2VFR A;  1N5W C;  1MBB A;  1E8F A;  2UUU A;  1MBT A;  3AMZ A;  1VDV A;  3NVW B;  2W55 A;  3I99 A;  1SB3 B;  5AE1 A;  2PLS A;  2O3G A;  4PVK A;  2BVF A;  1FO4 A;  3B9J B;  1F0X A;  3S1C A;  2GQU A;  3S1E A;  2GQT A;  2P4P A;  1W1S A;  3PM9 A;  2AXR A;  3W8X A;  4PZF A;  3HSU A;  3FW8 A;  3FWA A;  1ZR6 A;  4PWB A;  3DQ0 A;  1AHV A;  1E8H A;  1WVE A;  2VFV A;  4XLO A;  3LLB A;  4BC7 A;  3KJM A;  1QLU A;  3POP A;  1HSK A;  4JAY A;  1V97 A;  3TSJ A;  5L6F A;  2YVS A;  2QKN A;  2R8D A;  5I1W A;  1W1Q A;  5I1V A;  1W1M A;  3JS8 A;  1I19 A;  4UD8 A;  3W8W A;  1AHU A;  1QLT A;  4BCA A;  2UUV A;  3FW7 A;  5AE3 A;  2P13 A;  3GSY A;  4PWC A;  5FXF A;  4EC3 A;  2MBR A;  1FFU C;  3NVY B;  2Q85 A;  5G5H B;  3HRD C;  1DIQ A;  2BVH A;  3NVZ B;  1AHZ A;  5FXP A;  2R2Z A;  3VTE A;  2W3S A;  1W1K A;  3C0P A;  5G5G B;  1W1L A;  3DED A;  3FW9 A;  3PQB A;  2Y3S A;  1T3Q C;  2W54 A;  5AWV A;  4MLA A;  4OAL A;  3TSH A;  2EXR A;  5AE2 A;  3D2D A;  2Q4W A;  3NVV B;  1W1J A;  3AM9 A;  1E8G A;  2I0K A;  1WYG A;  2RK5 A;  3TX1 A;  3LAE A;  2NQW A;  1ZXI C;  3SR6 B;  4HG0 A;  1WVF A;  1W1R A;  4ZOH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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