1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavoenzyme
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
3PM9A 3FW9A 2R8DA 1W1MA 3TX1A 1QLUA 3AM9A 1AHUA 3VTEA 1DIIA 1W1OA 4PWCA 1FO4A 4PVKA 4DNSA 1JRPA 3DEDA 3AMZA 2W54A 2GQUA 3NVWB 2AXRA 3B9JB 2W3SA 2PLIA 3BW7A 3FW7A 1AHVA 2BVGA 1N5WC 4BC9A 5G5GB 4O95A 1FIQB 2BVHA 1N5XA 1N63C 4PZFA 4ML8A 4PVEA 3GSYA 2RK5A 1QLTA 1ZXIC 3TSHA 3S1DA 1E8HA 5FXEA 4JB1A 2R2ZA 1HSKA 3DQ0A 2NQWA 2PLSA 3S1FA 4MLAA 2VFRA 1E8GA 5FXFA 2QKNA 5HHZA 3FW8A 3NRZB 1ZR6A 5AE3A 1WVEA 2W55A 1E8FA 3JS8A 5HQXA 2W3RA 1MBBA 3LAEA 1E0YA 5FXDA 3SR6B 1MBTA 4UD8A 2BVFA 5HMRA 4PYTA 2VAOA 1N60C 1WVFA 4OALA 1SB3B 2Q85A 1FFUC 4ZOHB 1W1SA 3KJMA 1DZNA 4PVJA 2OAIA 1FFVC 1F0XA 4PWBA 3EUB3 3W8XA 2P4PA 1W1KA 1JROA 5ADZA 4JAYA 1VDVA 3D2HA 1DIQA 3AN1A 3FWAA 3NVZB 2E3TA 5AE1A 4HG0A 2O3GA 5AE2A 1W1QA 5FXPA 2P13A 2MBRA 2Q4WA 4BBYA 2GQTA 1V97A 3W8WA 1I19A 3TSJA 1AHZA 3LLBA 2YVSA 1T3QC 3W8ZA 3D2JA 3NVYB 4BC7A 2VFUA 1WYGA 5D79A 2VFSA 2VFVA 1UXYA 5G5HB 1N62C 1W1LA 3D2DA 1VAOA 4EC3A 4BCAA 3S1CA 3NS1B 3C0PA 2EXRA 2P3HA 1W1RA 1N61C 2QPMA 1W1JA 3S1EA 2I0KA 3ETRB 1RM6B 4XLOA 2VFTA 3I99A 4PVHA 3NVVB 3HRDC
chains in the Genus database with same CATH superfamily
3PM9A 3FW9A 2R8DA 1W1MA 3TX1A 1QLUA 3AM9A 1AHUA 3VTEA 1DIIA 1W1OA 4PWCA 1FO4A 4PVKA 4DNSA 1JRPA 3DEDA 3AMZA 2W54A 2GQUA 3NVWB 2AXRA 2IPIA 3B9JB 2W3SA 2PLIA 3BW7A 3FW7A 1AHVA 2BVGA 1N5WC 4BC9A 5G5GB 4O95A 1FIQB 2BVHA 1N5XA 1N63C 4PZFA 4ML8A 4PVEA 2WDWA 3GSYA 2RK5A 1QLTA 1ZXIC 3TSHA 3S1DA 1E8HA 5FXEA 4JB1A 2R2ZA 1HSKA 3DQ0A 2NQWA 2PLSA 3S1FA 4MLAA 2VFRA 1E8GA 5FXFA 2QKNA 5HHZA 3FW8A 3NRZB 1ZR6A 5AE3A 5AWVA 1WVEA 2W55A 1E8FA 3JS8A 5HQXA 2W3RA 1MBBA 3LAEA 1E0YA 5FXDA 3SR6B 1MBTA 4UD8A 2BVFA 5HMRA 4PYTA 2Y3SA 2VAOA 1N60C 3POPA 1WVFA 4OALA 1SB3B 2Y4GA 2Q85A 2Y08A 5I1VA 1FFUC 4ZOHB 1W1SA 3KJMA 1DZNA 4PVJA 2Y3RA 2OAIA 1FFVC 1F0XA 4PWBA 3EUB3 3W8XA 2P4PA 2UUUA 5K8EA 1W1KA 1JROA 3EJBB 5ADZA 4JAYA 3RJ8A 1VDVA 3D2HA 1DIQA 3AN1A 3FWAA 3NVZB 2E3TA 5AE1A 4HG0A 2O3GA 5AE2A 1W1QA 5L6FA 5FXPA 2P13A 2MBRA 2Q4WA 3PQBA 2UUVA 4BBYA 2GQTA 1V97A 3W8WA 1I19A 3TSJA 1AHZA 3EJDB 3LLBA 2YVSA 5L6GA 1T3QC 3NVYB 3D2JA 3W8ZA 4BC7A 2VFUA 3HSUA 1WYGA 5D79A 2VFSA 2VFVA 1UXYA 5G5HB 3RJAA 1N62C 1W1LA 3D2DA 1VAOA 4EC3A 4BCAA 3S1CA 3NS1B 3C0PA 2EXRA 2P3HA 5I1WA 1W1RA 1N61C 2QPMA 1W1JA 3S1EA 2I0KA 3ETRB 1RM6B 4XLOA 3EJEB 2VFTA 3I99A 4PVHA 3NVVB 3HRDC
chains in the Genus database with same CATH topology
3PM9A 3FW9A 2R8DA 1W1MA 3TX1A 1QLUA 3AM9A 1AHUA 3VTEA 1DIIA 1W1OA 4PWCA 1FO4A 4PVKA 4DNSA 1JRPA 3DEDA 3AMZA 2W54A 2GQUA 3NVWB 2AXRA 2IPIA 3B9JB 2W3SA 2PLIA 3BW7A 3FW7A 1AHVA 2BVGA 1N5WC 4BC9A 5G5GB 4O95A 1FIQB 2BVHA 1N5XA 1N63C 4PZFA 4ML8A 4PVEA 2WDWA 3GSYA 2RK5A 1QLTA 1ZXIC 3TSHA 3S1DA 1E8HA 5FXEA 4JB1A 2R2ZA 1HSKA 3DQ0A 2NQWA 2PLSA 3S1FA 4MLAA 2VFRA 1E8GA 5FXFA 2QKNA 5HHZA 3FW8A 3NRZB 1ZR6A 5AE3A 5AWVA 1WVEA 2W55A 1E8FA 3JS8A 5HQXA 2W3RA 1MBBA 3LAEA 1E0YA 5FXDA 3SR6B 1MBTA 4UD8A 2BVFA 5HMRA 4PYTA 2Y3SA 2VAOA 1N60C 3POPA 1WVFA 4OALA 1SB3B 2Y4GA 2Q85A 2Y08A 5I1VA 1FFUC 4ZOHB 1W1SA 3KJMA 1DZNA 4PVJA 2Y3RA 2OAIA 1FFVC 1F0XA 4PWBA 3EUB3 3W8XA 2P4PA 2UUUA 5K8EA 1W1KA 1JROA 5ADZA 4JAYA 3RJ8A 1VDVA 3D2HA 1DIQA 3AN1A 3FWAA 3NVZB 2E3TA 5AE1A 4HG0A 2O3GA 5AE2A 1W1QA 5L6FA 5FXPA 2P13A 2MBRA 2Q4WA 3PQBA 2UUVA 4BBYA 2GQTA 1V97A 3W8WA 1I19A 3TSJA 1AHZA 3LLBA 2YVSA 5L6GA 1T3QC 3W8ZA 3D2JA 3NVYB 4BC7A 2VFUA 3HSUA 1WYGA 5D79A 2VFSA 2VFVA 1UXYA 5G5HB 3RJAA 1N62C 1W1LA 3D2DA 1VAOA 4EC3A 4BCAA 3S1CA 3NS1B 3C0PA 2EXRA 2P3HA 5I1WA 1W1RA 1N61C 2QPMA 1W1JA 3S1EA 2I0KA 3ETRB 1RM6B 4XLOA 2VFTA 3I99A 4PVHA 3NVVB 3HRDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PM9 A;  3FW9 A;  2R8D A;  1W1M A;  3TX1 A;  1QLU A;  3AM9 A;  1AHU A;  3VTE A;  1DII A;  1W1O A;  4PWC A;  1FO4 A;  4PVK A;  4DNS A;  1JRP A;  3DED A;  3AMZ A;  2W54 A;  2GQU A;  3NVW B;  2AXR A;  3B9J B;  2W3S A;  2PLI A;  3BW7 A;  3FW7 A;  1AHV A;  2BVG A;  1N5W C;  4BC9 A;  5G5G B;  4O95 A;  1FIQ B;  2BVH A;  1N5X A;  1N63 C;  4PZF A;  4ML8 A;  4PVE A;  3GSY A;  2RK5 A;  1QLT A;  1ZXI C;  3TSH A;  3S1D A;  1E8H A;  5FXE A;  4JB1 A;  2R2Z A;  1HSK A;  3DQ0 A;  2NQW A;  2PLS A;  3S1F A;  4MLA A;  2VFR A;  1E8G A;  5FXF A;  2QKN A;  5HHZ A;  3FW8 A;  3NRZ B;  1ZR6 A;  5AE3 A;  1WVE A;  2W55 A;  1E8F A;  3JS8 A;  5HQX A;  2W3R A;  1MBB A;  3LAE A;  1E0Y A;  5FXD A;  3SR6 B;  1MBT A;  4UD8 A;  2BVF A;  5HMR A;  4PYT A;  2VAO A;  1N60 C;  1WVF A;  4OAL A;  1SB3 B;  2Q85 A;  1FFU C;  4ZOH B;  1W1S A;  3KJM A;  1DZN A;  4PVJ A;  2OAI A;  1FFV C;  1F0X A;  4PWB A;  3EUB 3;  3W8X A;  2P4P A;  1W1K A;  1JRO A;  5ADZ A;  4JAY A;  1VDV A;  3D2H A;  1DIQ A;  3AN1 A;  3FWA A;  3NVZ B;  2E3T A;  5AE1 A;  4HG0 A;  2O3G A;  5AE2 A;  1W1Q A;  5FXP A;  2P13 A;  2MBR A;  2Q4W A;  4BBY A;  2GQT A;  1V97 A;  3W8W A;  1I19 A;  3TSJ A;  1AHZ A;  3LLB A;  2YVS A;  1T3Q C;  3W8Z A;  3D2J A;  3NVY B;  4BC7 A;  2VFU A;  1WYG A;  5D79 A;  2VFS A;  2VFV A;  1UXY A;  5G5H B;  1N62 C;  1W1L A;  3D2D A;  1VAO A;  4EC3 A;  4BCA A;  3S1C A;  3NS1 B;  3C0P A;  2EXR A;  2P3H A;  1W1R A;  1N61 C;  2QPM A;  1W1J A;  3S1E A;  2I0K A;  3ETR B;  1RM6 B;  4XLO A;  2VFT A;  3I99 A;  4PVH A;  3NVV B;  3HRD C; 
#chains in the Genus database with same CATH topology
 3PM9 A;  3FW9 A;  2R8D A;  1W1M A;  3TX1 A;  1QLU A;  3AM9 A;  1AHU A;  3VTE A;  1DII A;  1W1O A;  4PWC A;  1FO4 A;  4PVK A;  4DNS A;  1JRP A;  3DED A;  3AMZ A;  2W54 A;  2GQU A;  3NVW B;  2AXR A;  2IPI A;  3B9J B;  2W3S A;  2PLI A;  3BW7 A;  3FW7 A;  1AHV A;  2BVG A;  1N5W C;  4BC9 A;  5G5G B;  4O95 A;  1FIQ B;  2BVH A;  1N5X A;  1N63 C;  4PZF A;  4ML8 A;  4PVE A;  2WDW A;  3GSY A;  2RK5 A;  1QLT A;  1ZXI C;  3TSH A;  3S1D A;  1E8H A;  5FXE A;  4JB1 A;  2R2Z A;  1HSK A;  3DQ0 A;  2NQW A;  2PLS A;  3S1F A;  4MLA A;  2VFR A;  1E8G A;  5FXF A;  2QKN A;  5HHZ A;  3FW8 A;  3NRZ B;  1ZR6 A;  5AE3 A;  5AWV A;  1WVE A;  2W55 A;  1E8F A;  3JS8 A;  5HQX A;  2W3R A;  1MBB A;  3LAE A;  1E0Y A;  5FXD A;  3SR6 B;  1MBT A;  4UD8 A;  2BVF A;  5HMR A;  4PYT A;  2Y3S A;  2VAO A;  1N60 C;  3POP A;  1WVF A;  4OAL A;  1SB3 B;  2Y4G A;  2Q85 A;  2Y08 A;  5I1V A;  1FFU C;  4ZOH B;  1W1S A;  3KJM A;  1DZN A;  4PVJ A;  2Y3R A;  2OAI A;  1FFV C;  1F0X A;  4PWB A;  3EUB 3;  3W8X A;  2P4P A;  2UUU A;  5K8E A;  1W1K A;  1JRO A;  3EJB B;  5ADZ A;  4JAY A;  3RJ8 A;  1VDV A;  3D2H A;  1DIQ A;  3AN1 A;  3FWA A;  3NVZ B;  2E3T A;  5AE1 A;  4HG0 A;  2O3G A;  5AE2 A;  1W1Q A;  5L6F A;  5FXP A;  2P13 A;  2MBR A;  2Q4W A;  3PQB A;  2UUV A;  4BBY A;  2GQT A;  1V97 A;  3W8W A;  1I19 A;  3TSJ A;  1AHZ A;  3EJD B;  3LLB A;  2YVS A;  5L6G A;  1T3Q C;  3NVY B;  3D2J A;  3W8Z A;  4BC7 A;  2VFU A;  3HSU A;  1WYG A;  5D79 A;  2VFS A;  2VFV A;  1UXY A;  5G5H B;  3RJA A;  1N62 C;  1W1L A;  3D2D A;  1VAO A;  4EC3 A;  4BCA A;  3S1C A;  3NS1 B;  3C0P A;  2EXR A;  2P3H A;  5I1W A;  1W1R A;  1N61 C;  2QPM A;  1W1J A;  3S1E A;  2I0K A;  3ETR B;  1RM6 B;  4XLO A;  3EJE B;  2VFT A;  3I99 A;  4PVH A;  3NVV B;  3HRD C; 
#chains in the Genus database with same CATH homology
 3PM9 A;  3FW9 A;  2R8D A;  1W1M A;  3TX1 A;  1QLU A;  3AM9 A;  1AHU A;  3VTE A;  1DII A;  1W1O A;  4PWC A;  1FO4 A;  4PVK A;  4DNS A;  1JRP A;  3DED A;  3AMZ A;  2W54 A;  2GQU A;  3NVW B;  2AXR A;  2IPI A;  3B9J B;  2W3S A;  2PLI A;  3BW7 A;  3FW7 A;  1AHV A;  2BVG A;  1N5W C;  4BC9 A;  5G5G B;  4O95 A;  1FIQ B;  2BVH A;  1N5X A;  1N63 C;  4PZF A;  4ML8 A;  4PVE A;  2WDW A;  3GSY A;  2RK5 A;  1QLT A;  1ZXI C;  3TSH A;  3S1D A;  1E8H A;  5FXE A;  4JB1 A;  2R2Z A;  1HSK A;  3DQ0 A;  2NQW A;  2PLS A;  3S1F A;  4MLA A;  2VFR A;  1E8G A;  5FXF A;  2QKN A;  5HHZ A;  3FW8 A;  3NRZ B;  1ZR6 A;  5AE3 A;  5AWV A;  1WVE A;  2W55 A;  1E8F A;  3JS8 A;  5HQX A;  2W3R A;  1MBB A;  3LAE A;  1E0Y A;  5FXD A;  3SR6 B;  1MBT A;  4UD8 A;  2BVF A;  5HMR A;  4PYT A;  2Y3S A;  2VAO A;  1N60 C;  3POP A;  1WVF A;  4OAL A;  1SB3 B;  2Y4G A;  2Q85 A;  2Y08 A;  5I1V A;  1FFU C;  4ZOH B;  1W1S A;  3KJM A;  1DZN A;  4PVJ A;  2Y3R A;  2OAI A;  1FFV C;  1F0X A;  4PWB A;  3EUB 3;  3W8X A;  2P4P A;  2UUU A;  5K8E A;  1W1K A;  1JRO A;  5ADZ A;  4JAY A;  3RJ8 A;  1VDV A;  3D2H A;  1DIQ A;  3AN1 A;  3FWA A;  3NVZ B;  2E3T A;  5AE1 A;  4HG0 A;  2O3G A;  5AE2 A;  1W1Q A;  5L6F A;  5FXP A;  2P13 A;  2MBR A;  2Q4W A;  3PQB A;  2UUV A;  4BBY A;  2GQT A;  1V97 A;  3W8W A;  1I19 A;  3TSJ A;  1AHZ A;  3LLB A;  2YVS A;  5L6G A;  1T3Q C;  3W8Z A;  3D2J A;  3NVY B;  4BC7 A;  2VFU A;  3HSU A;  1WYG A;  5D79 A;  2VFS A;  2VFV A;  1UXY A;  5G5H B;  3RJA A;  1N62 C;  1W1L A;  3D2D A;  1VAO A;  4EC3 A;  4BCA A;  3S1C A;  3NS1 B;  3C0P A;  2EXR A;  2P3H A;  5I1W A;  1W1R A;  1N61 C;  2QPM A;  1W1J A;  3S1E A;  2I0K A;  3ETR B;  1RM6 B;  4XLO A;  2VFT A;  3I99 A;  4PVH A;  3NVV B;  3HRD C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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