1DZNA

Asp170ser mutant of vanillyl-alcohol oxidase
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
555
structure length
550
Chain Sequence
AFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavin-dependent oxidase enzyme
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Asp170 is Crucial for the Redox Properties of Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 170
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1dznA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1dznA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1dznA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1dznA03
3FW9A 2O3GA 2VFVA 5FXFA 3NVVB 2EXRA 3NVYB 2GQTA 1V97A 1DIQA 4PVKA 1JRPA 1N5XA 4JB1A 4HG0A 2W55A 1WVEA 3FWAA 1AHZA 1T3QC 5G5HB 2BVHA 3AN1A 1FFVC 1RM6B 1QLUA 4ML8A 2W3SA 1W1OA 2GQUA 1W1QA 1N61C 5FXPA 1W1SA 1UXYA 2W3RA 5HMRA 1FO4A 3FW8A 3NVZB 3I99A 4PWBA 3LAEA 3NVWB 5FXDA 3S1DA 4PVHA 4BC7A 3GSYA 2I0KA 2OAIA 2VFRA 5AE1A 1ZR6A 2PLIA 3DEDA 1E8FA 3W8XA 1FIQB 3D2HA 4BC9A 5AE3A 1W1LA 1DZNA 4BBYA 2QKNA 2E3TA 5FXEA 1N63C 3KJMA 1W1MA 3DQ0A 3W8ZA 1I19A 2VFUA 1N5WC 2QPMA 5D79A 1SB3B 1AHUA 2MBRA 3FW7A 2RK5A 2NQWA 1W1KA 4OALA 5ADZA 3HRDC 3ETRB 2VFSA 2P13A 3D2JA 3EUB3 1FFUC 3AM9A 2AXRA 1WVFA 3PM9A 4BCAA 3SR6B 1E8HA 2BVGA 3S1CA 4DNSA 4O95A 2VAOA 1VDVA 3S1EA 2W54A 2P3HA 1W1JA 3D2DA 2YVSA 3BW7A 4PWCA 3C0PA 1N60C 1E0YA 1E8GA 1F0XA 3TSHA 4PZFA 3B9JB 1MBTA 2PLSA 2R2ZA 1JROA 1MBBA 5HHZA 1ZXIC 1N62C 2R8DA 3JS8A 3TSJA 3VTEA 2BVFA 2P4PA 1QLTA 4XLOA 2VFTA 5G5GB 3NS1B 5AE2A 3AMZA 3LLBA 1DIIA 1W1RA 3S1FA 4PYTA 1AHVA 2Q4WA 3W8WA 1HSKA 1WYGA 2Q85A 4PVEA 4ZOHB 4EC3A 4UD8A 4JAYA 5HQXA 4MLAA 4PVJA 3NRZB 1VAOA 3TX1A
chains in the Genus database with same CATH superfamily
3FW9A 2O3GA 2VFVA 5FXFA 3NVVB 2EXRA 3NVYB 2GQTA 1V97A 1DIQA 4PVKA 1JRPA 1N5XA 4JB1A 4HG0A 2W55A 1WVEA 3FWAA 1AHZA 1T3QC 5G5HB 3EJEB 2BVHA 3AN1A 1FFVC 1RM6B 2Y3RA 1QLUA 4ML8A 2W3SA 1W1OA 2GQUA 1W1QA 1N61C 5FXPA 1W1SA 1UXYA 2W3RA 5HMRA 1FO4A 3FW8A 3NVZB 5AWVA 3POPA 3I99A 4PWBA 3NVWB 3LAEA 5FXDA 2UUVA 3S1DA 2IPIA 4PVHA 4BC7A 2Y3SA 3RJ8A 3GSYA 2I0KA 2OAIA 2VFRA 5AE1A 1ZR6A 2PLIA 3DEDA 1E8FA 2Y08A 3W8XA 1FIQB 3D2HA 4BC9A 5AE3A 2WDWA 1W1LA 1DZNA 4BBYA 2QKNA 2E3TA 3PQBA 5FXEA 1N63C 3KJMA 1W1MA 3DQ0A 3W8ZA 1I19A 2VFUA 1N5WC 2QPMA 5D79A 1SB3B 1AHUA 2MBRA 3FW7A 2RK5A 2NQWA 1W1KA 4OALA 5ADZA 3HRDC 5I1VA 3ETRB 2VFSA 2P13A 3D2JA 3EUB3 1FFUC 3AM9A 2AXRA 1WVFA 3PM9A 4BCAA 3EJDB 3SR6B 1E8HA 2BVGA 5I1WA 3S1CA 4DNSA 4O95A 2VAOA 1VDVA 3S1EA 2W54A 3HSUA 2P3HA 1W1JA 3D2DA 2YVSA 2Y4GA 3BW7A 4PWCA 3C0PA 1N60C 1E0YA 1E8GA 1F0XA 3TSHA 4PZFA 5K8EA 3B9JB 1MBTA 2PLSA 2R2ZA 1JROA 3EJBB 1MBBA 5HHZA 2UUUA 1ZXIC 1N62C 2R8DA 3JS8A 3RJAA 3TSJA 3VTEA 2BVFA 2P4PA 1QLTA 4XLOA 2VFTA 5G5GB 3NS1B 5AE2A 3AMZA 3LLBA 1DIIA 1W1RA 3S1FA 4PYTA 1AHVA 2Q4WA 3W8WA 1HSKA 1WYGA 2Q85A 4PVEA 4ZOHB 4EC3A 5L6GA 4UD8A 4JAYA 5HQXA 4MLAA 4PVJA 5L6FA 3NRZB 1VAOA 3TX1A
chains in the Genus database with same CATH topology
3FW9A 2O3GA 2VFVA 5FXFA 3NVVB 2EXRA 3NVYB 2GQTA 1V97A 1DIQA 4PVKA 1JRPA 1N5XA 4JB1A 4HG0A 2W55A 1WVEA 3FWAA 1AHZA 1T3QC 5G5HB 2BVHA 3AN1A 1FFVC 1RM6B 2Y3RA 1QLUA 4ML8A 2W3SA 1W1OA 2GQUA 1W1QA 1N61C 5FXPA 1W1SA 1UXYA 2W3RA 5HMRA 1FO4A 3FW8A 3NVZB 5AWVA 3POPA 3I99A 4PWBA 3LAEA 3NVWB 5FXDA 2UUVA 3S1DA 2IPIA 4PVHA 4BC7A 2Y3SA 3RJ8A 3GSYA 2I0KA 2OAIA 2VFRA 5AE1A 1ZR6A 2PLIA 3DEDA 1E8FA 2Y08A 3W8XA 1FIQB 3D2HA 4BC9A 5AE3A 2WDWA 1W1LA 1DZNA 4BBYA 2QKNA 2E3TA 3PQBA 5FXEA 1N63C 3KJMA 1W1MA 3DQ0A 3W8ZA 1I19A 2VFUA 1N5WC 2QPMA 5D79A 1SB3B 1AHUA 2MBRA 3FW7A 2RK5A 2NQWA 1W1KA 4OALA 5ADZA 3HRDC 5I1VA 3ETRB 2VFSA 2P13A 3D2JA 3EUB3 1FFUC 3AM9A 2AXRA 1WVFA 3PM9A 4BCAA 3SR6B 1E8HA 2BVGA 5I1WA 3S1CA 4DNSA 4O95A 2VAOA 1VDVA 3S1EA 2W54A 3HSUA 2P3HA 1W1JA 3D2DA 2YVSA 2Y4GA 3BW7A 4PWCA 3C0PA 1N60C 1E0YA 1E8GA 1F0XA 3TSHA 4PZFA 5K8EA 3B9JB 1MBTA 2PLSA 2R2ZA 1JROA 1MBBA 5HHZA 2UUUA 1ZXIC 1N62C 2R8DA 3JS8A 3RJAA 3TSJA 3VTEA 2BVFA 2P4PA 1QLTA 4XLOA 2VFTA 5G5GB 3NS1B 5AE2A 3AMZA 3LLBA 1DIIA 1W1RA 3S1FA 4PYTA 1AHVA 2Q4WA 3W8WA 1HSKA 1WYGA 2Q85A 4PVEA 4ZOHB 4EC3A 5L6GA 4UD8A 4JAYA 5HQXA 4MLAA 4PVJA 5L6FA 3NRZB 1VAOA 3TX1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FW9 A;  2O3G A;  2VFV A;  5FXF A;  3NVV B;  2EXR A;  3NVY B;  2GQT A;  1V97 A;  1DIQ A;  4PVK A;  1JRP A;  1N5X A;  4JB1 A;  4HG0 A;  2W55 A;  1WVE A;  3FWA A;  1AHZ A;  1T3Q C;  5G5H B;  2BVH A;  3AN1 A;  1FFV C;  1RM6 B;  1QLU A;  4ML8 A;  2W3S A;  1W1O A;  2GQU A;  1W1Q A;  1N61 C;  5FXP A;  1W1S A;  1UXY A;  2W3R A;  5HMR A;  1FO4 A;  3FW8 A;  3NVZ B;  3I99 A;  4PWB A;  3LAE A;  3NVW B;  5FXD A;  3S1D A;  4PVH A;  4BC7 A;  3GSY A;  2I0K A;  2OAI A;  2VFR A;  5AE1 A;  1ZR6 A;  2PLI A;  3DED A;  1E8F A;  3W8X A;  1FIQ B;  3D2H A;  4BC9 A;  5AE3 A;  1W1L A;  1DZN A;  4BBY A;  2QKN A;  2E3T A;  5FXE A;  1N63 C;  3KJM A;  1W1M A;  3DQ0 A;  3W8Z A;  1I19 A;  2VFU A;  1N5W C;  2QPM A;  5D79 A;  1SB3 B;  1AHU A;  2MBR A;  3FW7 A;  2RK5 A;  2NQW A;  1W1K A;  4OAL A;  5ADZ A;  3HRD C;  3ETR B;  2VFS A;  2P13 A;  3D2J A;  3EUB 3;  1FFU C;  3AM9 A;  2AXR A;  1WVF A;  3PM9 A;  4BCA A;  3SR6 B;  1E8H A;  2BVG A;  3S1C A;  4DNS A;  4O95 A;  2VAO A;  1VDV A;  3S1E A;  2W54 A;  2P3H A;  1W1J A;  3D2D A;  2YVS A;  3BW7 A;  4PWC A;  3C0P A;  1N60 C;  1E0Y A;  1E8G A;  1F0X A;  3TSH A;  4PZF A;  3B9J B;  1MBT A;  2PLS A;  2R2Z A;  1JRO A;  1MBB A;  5HHZ A;  1ZXI C;  1N62 C;  2R8D A;  3JS8 A;  3TSJ A;  3VTE A;  2BVF A;  2P4P A;  1QLT A;  4XLO A;  2VFT A;  5G5G B;  3NS1 B;  5AE2 A;  3AMZ A;  3LLB A;  1DII A;  1W1R A;  3S1F A;  4PYT A;  1AHV A;  2Q4W A;  3W8W A;  1HSK A;  1WYG A;  2Q85 A;  4PVE A;  4ZOH B;  4EC3 A;  4UD8 A;  4JAY A;  5HQX A;  4MLA A;  4PVJ A;  3NRZ B;  1VAO A;  3TX1 A; 
#chains in the Genus database with same CATH topology
 3FW9 A;  2O3G A;  2VFV A;  5FXF A;  3NVV B;  2EXR A;  3NVY B;  2GQT A;  1V97 A;  1DIQ A;  4PVK A;  1JRP A;  1N5X A;  4JB1 A;  4HG0 A;  2W55 A;  1WVE A;  3FWA A;  1AHZ A;  1T3Q C;  5G5H B;  3EJE B;  2BVH A;  3AN1 A;  1FFV C;  1RM6 B;  2Y3R A;  1QLU A;  4ML8 A;  2W3S A;  1W1O A;  2GQU A;  1W1Q A;  1N61 C;  5FXP A;  1W1S A;  1UXY A;  2W3R A;  5HMR A;  1FO4 A;  3FW8 A;  3NVZ B;  5AWV A;  3POP A;  3I99 A;  4PWB A;  3NVW B;  3LAE A;  5FXD A;  2UUV A;  3S1D A;  2IPI A;  4PVH A;  4BC7 A;  2Y3S A;  3RJ8 A;  3GSY A;  2I0K A;  2OAI A;  2VFR A;  5AE1 A;  1ZR6 A;  2PLI A;  3DED A;  1E8F A;  2Y08 A;  3W8X A;  1FIQ B;  3D2H A;  4BC9 A;  5AE3 A;  2WDW A;  1W1L A;  1DZN A;  4BBY A;  2QKN A;  2E3T A;  3PQB A;  5FXE A;  1N63 C;  3KJM A;  1W1M A;  3DQ0 A;  3W8Z A;  1I19 A;  2VFU A;  1N5W C;  2QPM A;  5D79 A;  1SB3 B;  1AHU A;  2MBR A;  3FW7 A;  2RK5 A;  2NQW A;  1W1K A;  4OAL A;  5ADZ A;  3HRD C;  5I1V A;  3ETR B;  2VFS A;  2P13 A;  3D2J A;  3EUB 3;  1FFU C;  3AM9 A;  2AXR A;  1WVF A;  3PM9 A;  4BCA A;  3EJD B;  3SR6 B;  1E8H A;  2BVG A;  5I1W A;  3S1C A;  4DNS A;  4O95 A;  2VAO A;  1VDV A;  3S1E A;  2W54 A;  3HSU A;  2P3H A;  1W1J A;  3D2D A;  2YVS A;  2Y4G A;  3BW7 A;  4PWC A;  3C0P A;  1N60 C;  1E0Y A;  1E8G A;  1F0X A;  3TSH A;  4PZF A;  5K8E A;  3B9J B;  1MBT A;  2PLS A;  2R2Z A;  1JRO A;  3EJB B;  1MBB A;  5HHZ A;  2UUU A;  1ZXI C;  1N62 C;  2R8D A;  3JS8 A;  3RJA A;  3TSJ A;  3VTE A;  2BVF A;  2P4P A;  1QLT A;  4XLO A;  2VFT A;  5G5G B;  3NS1 B;  5AE2 A;  3AMZ A;  3LLB A;  1DII A;  1W1R A;  3S1F A;  4PYT A;  1AHV A;  2Q4W A;  3W8W A;  1HSK A;  1WYG A;  2Q85 A;  4PVE A;  4ZOH B;  4EC3 A;  5L6G A;  4UD8 A;  4JAY A;  5HQX A;  4MLA A;  4PVJ A;  5L6F A;  3NRZ B;  1VAO A;  3TX1 A; 
#chains in the Genus database with same CATH homology
 3FW9 A;  2O3G A;  2VFV A;  5FXF A;  3NVV B;  2EXR A;  3NVY B;  2GQT A;  1V97 A;  1DIQ A;  4PVK A;  1JRP A;  1N5X A;  4JB1 A;  4HG0 A;  2W55 A;  1WVE A;  3FWA A;  1AHZ A;  1T3Q C;  5G5H B;  2BVH A;  3AN1 A;  1FFV C;  1RM6 B;  2Y3R A;  1QLU A;  4ML8 A;  2W3S A;  1W1O A;  2GQU A;  1W1Q A;  1N61 C;  5FXP A;  1W1S A;  1UXY A;  2W3R A;  5HMR A;  1FO4 A;  3FW8 A;  3NVZ B;  5AWV A;  3POP A;  3I99 A;  4PWB A;  3LAE A;  3NVW B;  5FXD A;  2UUV A;  3S1D A;  2IPI A;  4PVH A;  4BC7 A;  2Y3S A;  3RJ8 A;  3GSY A;  2I0K A;  2OAI A;  2VFR A;  5AE1 A;  1ZR6 A;  2PLI A;  3DED A;  1E8F A;  2Y08 A;  3W8X A;  1FIQ B;  3D2H A;  4BC9 A;  5AE3 A;  2WDW A;  1W1L A;  1DZN A;  4BBY A;  2QKN A;  2E3T A;  3PQB A;  5FXE A;  1N63 C;  3KJM A;  1W1M A;  3DQ0 A;  3W8Z A;  1I19 A;  2VFU A;  1N5W C;  2QPM A;  5D79 A;  1SB3 B;  1AHU A;  2MBR A;  3FW7 A;  2RK5 A;  2NQW A;  1W1K A;  4OAL A;  5ADZ A;  3HRD C;  5I1V A;  3ETR B;  2VFS A;  2P13 A;  3D2J A;  3EUB 3;  1FFU C;  3AM9 A;  2AXR A;  1WVF A;  3PM9 A;  4BCA A;  3SR6 B;  1E8H A;  2BVG A;  5I1W A;  3S1C A;  4DNS A;  4O95 A;  2VAO A;  1VDV A;  3S1E A;  2W54 A;  3HSU A;  2P3H A;  1W1J A;  3D2D A;  2YVS A;  2Y4G A;  3BW7 A;  4PWC A;  3C0P A;  1N60 C;  1E0Y A;  1E8G A;  1F0X A;  3TSH A;  4PZF A;  5K8E A;  3B9J B;  1MBT A;  2PLS A;  2R2Z A;  1JRO A;  1MBB A;  5HHZ A;  2UUU A;  1ZXI C;  1N62 C;  2R8D A;  3JS8 A;  3RJA A;  3TSJ A;  3VTE A;  2BVF A;  2P4P A;  1QLT A;  4XLO A;  2VFT A;  5G5G B;  3NS1 B;  5AE2 A;  3AMZ A;  3LLB A;  1DII A;  1W1R A;  3S1F A;  4PYT A;  1AHV A;  2Q4W A;  3W8W A;  1HSK A;  1WYG A;  2Q85 A;  4PVE A;  4ZOH B;  4EC3 A;  5L6G A;  4UD8 A;  4JAY A;  5HQX A;  4MLA A;  4PVJ A;  5L6F A;  3NRZ B;  1VAO A;  3TX1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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