1DZNA

Asp170ser mutant of vanillyl-alcohol oxidase
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
555
structure length
550
Chain Sequence
AFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Asp170 is Crucial for the Redox Properties of Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Flavin-dependent oxidase enzyme
total genus 170
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1dznA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1dznA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1dznA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1dznA03
4JB1A 3TX1A 1F0XA 2O3GA 3LLBA 1MBTA 1E8HA 5HQXA 2PLIA 1DIQA 1WVFA 1E0YA 1W1RA 4ZOHB 3EUB3 3BW7A 1QLUA 4MLAA 3FW7A 4BBYA 3TSJA 3DQ0A 2VFTA 5FXDA 2GQUA 1E8GA 1AHZA 4PWBA 4BC7A 1VDVA 2Q4WA 3NVVB 5G5GB 5FXFA 1DIIA 1JRPA 5FXPA 5G5HB 3W8ZA 4JAYA 4O95A 4XLOA 3I99A 4BCAA 2VFSA 4PVKA 1UXYA 5AE3A 1N5WC 1W1LA 3ETRB 2BVFA 3B9JB 3DEDA 2BVGA 2VAOA 1VAOA 2OAIA 1E8FA 3C0PA 1N63C 5HHZA 1SB3B 4BC9A 5ADZA 2MBRA 3FW8A 3FWAA 3W8WA 1FO4A 1WVEA 4PYTA 3AMZA 2W3RA 4OALA 1W1QA 2W3SA 5AE1A 4PZFA 1MBBA 2PLSA 2VFUA 1W1KA 3S1EA 3LAEA 1W1SA 1N61C 2W54A 4PVHA 3FW9A 4DNSA 1W1JA 1WYGA 2RK5A 3SR6B 2E3TA 3NVZB 2VFRA 3S1CA 2P3HA 1QLTA 1T3QC 2QKNA 1FFVC 1AHVA 5AE2A 1W1MA 1FFUC 1AHUA 4HG0A 2EXRA 2P13A 1I19A 2GQTA 1JROA 2W55A 3AM9A 2R2ZA 3NVWB 4UD8A 1DZNA 3GSYA 2QPMA 3KJMA 4PVEA 2NQWA 2YVSA 3AN1A 3HRDC 1N60C 3D2DA 2Q85A 2BVHA 3JS8A 3PM9A 5FXEA 1RM6B 2I0KA 1HSKA 3S1FA 2R8DA 3S1DA 5HMRA 1FIQB 4PWCA 2P4PA 2AXRA 1ZXIC 2VFVA 3VTEA 1ZR6A 1N5XA 1V97A 1N62C 3NRZB 4PVJA 1W1OA 3D2JA 3NS1B 4ML8A 4EC3A 3D2HA 3TSHA 3NVYB 3W8XA 5D79A
chains in the Genus database with same CATH superfamily
4JB1A 3TX1A 1F0XA 2O3GA 3LLBA 2Y08A 1MBTA 1E8HA 5HQXA 2PLIA 1DIQA 1WVFA 1E0YA 1W1RA 4ZOHB 3EUB3 3BW7A 3EJEB 1QLUA 4MLAA 5K8EA 3FW7A 4BBYA 3TSJA 3DQ0A 2VFTA 5AWVA 5FXDA 2GQUA 1E8GA 5L6GA 1AHZA 4PWBA 4BC7A 1VDVA 2Q4WA 3NVVB 5G5GB 5FXFA 3RJAA 1DIIA 1JRPA 5FXPA 5G5HB 3W8ZA 4JAYA 4O95A 4XLOA 3RJ8A 3I99A 4BCAA 2VFSA 4PVKA 3EJBB 2UUVA 1UXYA 5AE3A 1N5WC 1W1LA 3ETRB 2BVFA 3B9JB 5I1VA 3DEDA 2BVGA 2Y3RA 2Y4GA 2VAOA 1VAOA 5L6FA 2OAIA 1E8FA 3C0PA 1N63C 5HHZA 1SB3B 4BC9A 5ADZA 2MBRA 3FW8A 3FWAA 3W8WA 1FO4A 1WVEA 4PYTA 3AMZA 2W3RA 4OALA 1W1QA 2W3SA 5AE1A 4PZFA 1MBBA 2PLSA 2VFUA 1W1KA 3S1EA 3EJDB 1W1SA 1N61C 3LAEA 3PQBA 2W54A 4PVHA 3FW9A 4DNSA 1W1JA 1WYGA 2RK5A 3POPA 3SR6B 2E3TA 3NVZB 2VFRA 3S1CA 2P3HA 1QLTA 1T3QC 2QKNA 1FFVC 1AHVA 5AE2A 1W1MA 1FFUC 1AHUA 4HG0A 2EXRA 2P13A 1I19A 2GQTA 1JROA 2W55A 3AM9A 2R2ZA 3NVWB 4UD8A 1DZNA 3GSYA 2QPMA 3KJMA 4PVEA 2NQWA 2YVSA 3AN1A 3HRDC 1N60C 3D2DA 2IPIA 2UUUA 2Q85A 2BVHA 3JS8A 3PM9A 5FXEA 1RM6B 2I0KA 1HSKA 3S1FA 2R8DA 3S1DA 5HMRA 1FIQB 4PWCA 2P4PA 2AXRA 1ZXIC 2Y3SA 2VFVA 3VTEA 1ZR6A 1N5XA 2WDWA 1V97A 1N62C 3NRZB 4PVJA 5I1WA 1W1OA 3D2JA 3NS1B 4ML8A 4EC3A 3HSUA 3D2HA 3NVYB 3TSHA 3W8XA 5D79A
chains in the Genus database with same CATH topology
4JB1A 3TX1A 1F0XA 2O3GA 3LLBA 2Y08A 1MBTA 1E8HA 5HQXA 2PLIA 1DIQA 1WVFA 1E0YA 1W1RA 4ZOHB 3EUB3 3BW7A 1QLUA 4MLAA 5K8EA 3FW7A 4BBYA 3TSJA 3DQ0A 2VFTA 5AWVA 5FXDA 2GQUA 1E8GA 5L6GA 1AHZA 4PWBA 4BC7A 1VDVA 2Q4WA 3NVVB 5G5GB 5FXFA 3RJAA 1DIIA 1JRPA 5FXPA 5G5HB 3W8ZA 4JAYA 4O95A 4XLOA 3RJ8A 3I99A 4BCAA 2VFSA 4PVKA 2UUVA 1UXYA 5AE3A 1N5WC 1W1LA 3ETRB 2BVFA 3B9JB 5I1VA 3DEDA 2BVGA 2Y3RA 2Y4GA 2VAOA 1VAOA 5L6FA 2OAIA 1E8FA 3C0PA 1N63C 5HHZA 1SB3B 4BC9A 5ADZA 2MBRA 3FW8A 3FWAA 3W8WA 1FO4A 1WVEA 4PYTA 3AMZA 2W3RA 4OALA 1W1QA 2W3SA 5AE1A 4PZFA 1MBBA 2PLSA 2VFUA 1W1KA 3S1EA 3LAEA 1W1SA 1N61C 3PQBA 2W54A 4PVHA 3FW9A 4DNSA 1W1JA 1WYGA 2RK5A 3POPA 3SR6B 2E3TA 3NVZB 2VFRA 3S1CA 2P3HA 1QLTA 1T3QC 2QKNA 1FFVC 1AHVA 5AE2A 1W1MA 1FFUC 1AHUA 4HG0A 2EXRA 2P13A 1I19A 2GQTA 1JROA 2W55A 3AM9A 2R2ZA 3NVWB 4UD8A 1DZNA 3GSYA 2QPMA 3KJMA 4PVEA 2NQWA 2YVSA 3AN1A 3HRDC 1N60C 3D2DA 2IPIA 2UUUA 2Q85A 2BVHA 3JS8A 3PM9A 5FXEA 1RM6B 2I0KA 1HSKA 3S1FA 2R8DA 3S1DA 5HMRA 1FIQB 4PWCA 2P4PA 2AXRA 1ZXIC 2Y3SA 2VFVA 3VTEA 1ZR6A 1N5XA 2WDWA 1V97A 1N62C 3NRZB 4PVJA 5I1WA 1W1OA 3D2JA 3NS1B 4ML8A 4EC3A 3HSUA 3D2HA 3TSHA 3NVYB 3W8XA 5D79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JB1 A;  3TX1 A;  1F0X A;  2O3G A;  3LLB A;  1MBT A;  1E8H A;  5HQX A;  2PLI A;  1DIQ A;  1WVF A;  1E0Y A;  1W1R A;  4ZOH B;  3EUB 3;  3BW7 A;  1QLU A;  4MLA A;  3FW7 A;  4BBY A;  3TSJ A;  3DQ0 A;  2VFT A;  5FXD A;  2GQU A;  1E8G A;  1AHZ A;  4PWB A;  4BC7 A;  1VDV A;  2Q4W A;  3NVV B;  5G5G B;  5FXF A;  1DII A;  1JRP A;  5FXP A;  5G5H B;  3W8Z A;  4JAY A;  4O95 A;  4XLO A;  3I99 A;  4BCA A;  2VFS A;  4PVK A;  1UXY A;  5AE3 A;  1N5W C;  1W1L A;  3ETR B;  2BVF A;  3B9J B;  3DED A;  2BVG A;  2VAO A;  1VAO A;  2OAI A;  1E8F A;  3C0P A;  1N63 C;  5HHZ A;  1SB3 B;  4BC9 A;  5ADZ A;  2MBR A;  3FW8 A;  3FWA A;  3W8W A;  1FO4 A;  1WVE A;  4PYT A;  3AMZ A;  2W3R A;  4OAL A;  1W1Q A;  2W3S A;  5AE1 A;  4PZF A;  1MBB A;  2PLS A;  2VFU A;  1W1K A;  3S1E A;  3LAE A;  1W1S A;  1N61 C;  2W54 A;  4PVH A;  3FW9 A;  4DNS A;  1W1J A;  1WYG A;  2RK5 A;  3SR6 B;  2E3T A;  3NVZ B;  2VFR A;  3S1C A;  2P3H A;  1QLT A;  1T3Q C;  2QKN A;  1FFV C;  1AHV A;  5AE2 A;  1W1M A;  1FFU C;  1AHU A;  4HG0 A;  2EXR A;  2P13 A;  1I19 A;  2GQT A;  1JRO A;  2W55 A;  3AM9 A;  2R2Z A;  3NVW B;  4UD8 A;  1DZN A;  3GSY A;  2QPM A;  3KJM A;  4PVE A;  2NQW A;  2YVS A;  3AN1 A;  3HRD C;  1N60 C;  3D2D A;  2Q85 A;  2BVH A;  3JS8 A;  3PM9 A;  5FXE A;  1RM6 B;  2I0K A;  1HSK A;  3S1F A;  2R8D A;  3S1D A;  5HMR A;  1FIQ B;  4PWC A;  2P4P A;  2AXR A;  1ZXI C;  2VFV A;  3VTE A;  1ZR6 A;  1N5X A;  1V97 A;  1N62 C;  3NRZ B;  4PVJ A;  1W1O A;  3D2J A;  3NS1 B;  4ML8 A;  4EC3 A;  3D2H A;  3TSH A;  3NVY B;  3W8X A;  5D79 A; 
#chains in the Genus database with same CATH topology
 4JB1 A;  3TX1 A;  1F0X A;  2O3G A;  3LLB A;  2Y08 A;  1MBT A;  1E8H A;  5HQX A;  2PLI A;  1DIQ A;  1WVF A;  1E0Y A;  1W1R A;  4ZOH B;  3EUB 3;  3BW7 A;  3EJE B;  1QLU A;  4MLA A;  5K8E A;  3FW7 A;  4BBY A;  3TSJ A;  3DQ0 A;  2VFT A;  5AWV A;  5FXD A;  2GQU A;  1E8G A;  5L6G A;  1AHZ A;  4PWB A;  4BC7 A;  1VDV A;  2Q4W A;  3NVV B;  5G5G B;  5FXF A;  3RJA A;  1DII A;  1JRP A;  5FXP A;  5G5H B;  3W8Z A;  4JAY A;  4O95 A;  4XLO A;  3RJ8 A;  3I99 A;  4BCA A;  2VFS A;  4PVK A;  3EJB B;  2UUV A;  1UXY A;  5AE3 A;  1N5W C;  1W1L A;  3ETR B;  2BVF A;  3B9J B;  5I1V A;  3DED A;  2BVG A;  2Y3R A;  2Y4G A;  2VAO A;  1VAO A;  5L6F A;  2OAI A;  1E8F A;  3C0P A;  1N63 C;  5HHZ A;  1SB3 B;  4BC9 A;  5ADZ A;  2MBR A;  3FW8 A;  3FWA A;  3W8W A;  1FO4 A;  1WVE A;  4PYT A;  3AMZ A;  2W3R A;  4OAL A;  1W1Q A;  2W3S A;  5AE1 A;  4PZF A;  1MBB A;  2PLS A;  2VFU A;  1W1K A;  3S1E A;  3EJD B;  1W1S A;  1N61 C;  3LAE A;  3PQB A;  2W54 A;  4PVH A;  3FW9 A;  4DNS A;  1W1J A;  1WYG A;  2RK5 A;  3POP A;  3SR6 B;  2E3T A;  3NVZ B;  2VFR A;  3S1C A;  2P3H A;  1QLT A;  1T3Q C;  2QKN A;  1FFV C;  1AHV A;  5AE2 A;  1W1M A;  1FFU C;  1AHU A;  4HG0 A;  2EXR A;  2P13 A;  1I19 A;  2GQT A;  1JRO A;  2W55 A;  3AM9 A;  2R2Z A;  3NVW B;  4UD8 A;  1DZN A;  3GSY A;  2QPM A;  3KJM A;  4PVE A;  2NQW A;  2YVS A;  3AN1 A;  3HRD C;  1N60 C;  3D2D A;  2IPI A;  2UUU A;  2Q85 A;  2BVH A;  3JS8 A;  3PM9 A;  5FXE A;  1RM6 B;  2I0K A;  1HSK A;  3S1F A;  2R8D A;  3S1D A;  5HMR A;  1FIQ B;  4PWC A;  2P4P A;  2AXR A;  1ZXI C;  2Y3S A;  2VFV A;  3VTE A;  1ZR6 A;  1N5X A;  2WDW A;  1V97 A;  1N62 C;  3NRZ B;  4PVJ A;  5I1W A;  1W1O A;  3D2J A;  3NS1 B;  4ML8 A;  4EC3 A;  3HSU A;  3D2H A;  3NVY B;  3TSH A;  3W8X A;  5D79 A; 
#chains in the Genus database with same CATH homology
 4JB1 A;  3TX1 A;  1F0X A;  2O3G A;  3LLB A;  2Y08 A;  1MBT A;  1E8H A;  5HQX A;  2PLI A;  1DIQ A;  1WVF A;  1E0Y A;  1W1R A;  4ZOH B;  3EUB 3;  3BW7 A;  1QLU A;  4MLA A;  5K8E A;  3FW7 A;  4BBY A;  3TSJ A;  3DQ0 A;  2VFT A;  5AWV A;  5FXD A;  2GQU A;  1E8G A;  5L6G A;  1AHZ A;  4PWB A;  4BC7 A;  1VDV A;  2Q4W A;  3NVV B;  5G5G B;  5FXF A;  3RJA A;  1DII A;  1JRP A;  5FXP A;  5G5H B;  3W8Z A;  4JAY A;  4O95 A;  4XLO A;  3RJ8 A;  3I99 A;  4BCA A;  2VFS A;  4PVK A;  2UUV A;  1UXY A;  5AE3 A;  1N5W C;  1W1L A;  3ETR B;  2BVF A;  3B9J B;  5I1V A;  3DED A;  2BVG A;  2Y3R A;  2Y4G A;  2VAO A;  1VAO A;  5L6F A;  2OAI A;  1E8F A;  3C0P A;  1N63 C;  5HHZ A;  1SB3 B;  4BC9 A;  5ADZ A;  2MBR A;  3FW8 A;  3FWA A;  3W8W A;  1FO4 A;  1WVE A;  4PYT A;  3AMZ A;  2W3R A;  4OAL A;  1W1Q A;  2W3S A;  5AE1 A;  4PZF A;  1MBB A;  2PLS A;  2VFU A;  1W1K A;  3S1E A;  3LAE A;  1W1S A;  1N61 C;  3PQB A;  2W54 A;  4PVH A;  3FW9 A;  4DNS A;  1W1J A;  1WYG A;  2RK5 A;  3POP A;  3SR6 B;  2E3T A;  3NVZ B;  2VFR A;  3S1C A;  2P3H A;  1QLT A;  1T3Q C;  2QKN A;  1FFV C;  1AHV A;  5AE2 A;  1W1M A;  1FFU C;  1AHU A;  4HG0 A;  2EXR A;  2P13 A;  1I19 A;  2GQT A;  1JRO A;  2W55 A;  3AM9 A;  2R2Z A;  3NVW B;  4UD8 A;  1DZN A;  3GSY A;  2QPM A;  3KJM A;  4PVE A;  2NQW A;  2YVS A;  3AN1 A;  3HRD C;  1N60 C;  3D2D A;  2IPI A;  2UUU A;  2Q85 A;  2BVH A;  3JS8 A;  3PM9 A;  5FXE A;  1RM6 B;  2I0K A;  1HSK A;  3S1F A;  2R8D A;  3S1D A;  5HMR A;  1FIQ B;  4PWC A;  2P4P A;  2AXR A;  1ZXI C;  2Y3S A;  2VFV A;  3VTE A;  1ZR6 A;  1N5X A;  2WDW A;  1V97 A;  1N62 C;  3NRZ B;  4PVJ A;  5I1W A;  1W1O A;  3D2J A;  3NS1 B;  4ML8 A;  4EC3 A;  3HSU A;  3D2H A;  3TSH A;  3NVY B;  3W8X A;  5D79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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