5HMRA

Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (zmcko4) in complex with phenylurea inhibitor 3fmtdz
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
492
structure length
447
Chain Sequence
GGRLSVDASDIAEASRDFGGVARAEPMAVFHPRAAGDVAGLVGAAFRSARGFRVSARGHGHSISGQAQAAGGVVVDMSRVARALPVHSAALGGHYVDVWGGELWVDVLNWTLSHGGLAPRSWTDYLYLSVGGTLSNAGISGQAFHHGPQISNVYELDVVTGKGEVVTCSETENPDLFFGVLGGLGQFGIITRARIALERAPKRVRWIRALYSNFSEFTADQERLISLGRRFDYVEGFVVAASVLYCLEVTKNYDDETAGSVDQDVDTLLGELNFLPGTVFTTDLPYVDFLDRVHKAELKLRAKGMWEVPHPWLNLFVPASRIADFDRGVFRGVLGGPVLIYPMNKHKWDPRSSAVTPDEEVFYLVAFLRSALPGAPESLEALARQNQRILDFCAGTGIGAKQYLPGHKARHEWAEHFGAARWDRFARLKAEFDPRAILAAGQGIFRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 4
publication title Novel thidiazuron-derived inhibitors of cytokinin oxidase/dehydrogenase.
pubmed doi rcsb
source organism Zea mays
total genus 146
structure length 447
sequence length 492
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2016-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 5hmrA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5hmrA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 5hmrA03
4ZOHB 3KJMA 4PWBA 2BVFA 3W8XA 3S1EA 2O3GA 1WYGA 3FW9A 1QLTA 5ADZA 1AHUA 1N61C 2I0KA 2VFVA 2P13A 1I19A 2OAIA 4BCAA 4BBYA 1E8FA 3NVVB 2MBRA 1W1LA 3FWAA 3W8WA 4BC9A 2QPMA 1FFUC 2RK5A 3D2HA 1W1RA 1N63C 3D2DA 5FXFA 1N60C 1F0XA 3BW7A 4MLAA 1W1QA 2BVGA 3ETRB 4UD8A 3TSHA 3D2JA 1N62C 5AE3A 4OALA 3NVYB 2VAOA 3S1FA 3HRDC 5G5GB 4DNSA 2W55A 4HG0A 4JAYA 2W3RA 4JB1A 1W1JA 2VFSA 1W1SA 1QLUA 3FW8A 1AHVA 3SR6B 1WVEA 4PWCA 5G5HB 1UXYA 1FO4A 3B9JB 1RM6B 1W1KA 4PYTA 3DQ0A 1E8GA 4PVEA 3LAEA 5HMRA 3JS8A 2Q4WA 3EUB3 1MBBA 1T3QC 5FXDA 3TSJA 3AM9A 1E0YA 4PVJA 1FIQB 3NS1B 2GQUA 5FXPA 4PVKA 2EXRA 1E8HA 2GQTA 2E3TA 1V97A 1MBTA 2R2ZA 2QKNA 1N5WC 3NRZB 4PZFA 4BC7A 1DIQA 1HSKA 1FFVC 1WVFA 1JRPA 2BVHA 5HQXA 3PM9A 5AE1A 2AXRA 3W8ZA 3GSYA 1VAOA 5D79A 1DIIA 3FW7A 3NVZB 1N5XA 1VDVA 3VTEA 1SB3B 3LLBA 2VFRA 2VFUA 3DEDA 1ZXIC 3S1DA 1ZR6A 3AN1A 2YVSA 2PLSA 4EC3A 2R8DA 2PLIA 3AMZA 2NQWA 2W54A 3TX1A 1W1MA 2VFTA 3I99A 2P4PA 5AE2A 1AHZA 2Q85A 3C0PA 1W1OA 3S1CA 4PVHA 5HHZA 4XLOA 2P3HA 4ML8A 5FXEA 1JROA 1DZNA 4O95A 2W3SA 3NVWB
chains in the Genus database with same CATH superfamily
4ZOHB 3KJMA 4PWBA 2BVFA 3W8XA 3S1EA 2O3GA 1WYGA 3FW9A 1QLTA 5ADZA 1AHUA 1N61C 2Y3RA 2I0KA 2VFVA 2P13A 1I19A 2OAIA 2Y4GA 4BCAA 4BBYA 1E8FA 3NVVB 2MBRA 1W1LA 3FWAA 3W8WA 4BC9A 2QPMA 1FFUC 2RK5A 3D2HA 5K8EA 2WDWA 1W1RA 1N63C 3D2DA 5FXFA 2UUUA 1N60C 1F0XA 3BW7A 4MLAA 1W1QA 2BVGA 3ETRB 4UD8A 3TSHA 3D2JA 1N62C 5AE3A 4OALA 3NVYB 2VAOA 3S1FA 3HRDC 2Y08A 5G5GB 4DNSA 2W55A 4HG0A 4JAYA 5AWVA 2W3RA 4JB1A 3EJDB 1W1JA 2VFSA 5I1WA 1W1SA 3HSUA 1QLUA 3FW8A 1AHVA 3SR6B 1WVEA 4PWCA 5G5HB 5L6GA 1UXYA 1FO4A 3B9JB 1RM6B 1W1KA 4PYTA 3DQ0A 3RJ8A 1E8GA 4PVEA 3LAEA 2Y3SA 5HMRA 3JS8A 2Q4WA 3EUB3 5I1VA 1MBBA 1T3QC 5FXDA 3TSJA 3AM9A 1E0YA 4PVJA 1FIQB 3NS1B 2IPIA 2GQUA 5FXPA 3POPA 4PVKA 2EXRA 1E8HA 2GQTA 2E3TA 1V97A 1MBTA 2R2ZA 2QKNA 1N5WC 3NRZB 4PZFA 4BC7A 1DIQA 1HSKA 1FFVC 1WVFA 1JRPA 2BVHA 3EJBB 5HQXA 3PM9A 3EJEB 5AE1A 2AXRA 3W8ZA 3GSYA 1VAOA 5D79A 1DIIA 3FW7A 3NVZB 1N5XA 1VDVA 3VTEA 1SB3B 3LLBA 2VFRA 2VFUA 3DEDA 1ZXIC 3S1DA 1ZR6A 3AN1A 2YVSA 2PLSA 4EC3A 2R8DA 5L6FA 2PLIA 3AMZA 2NQWA 2W54A 3TX1A 1W1MA 2VFTA 3I99A 2P4PA 5AE2A 1AHZA 2Q85A 3RJAA 3C0PA 1W1OA 3S1CA 4PVHA 5HHZA 4XLOA 3PQBA 2UUVA 2P3HA 4ML8A 5FXEA 1JROA 1DZNA 4O95A 2W3SA 3NVWB
chains in the Genus database with same CATH topology
4ZOHB 3KJMA 4PWBA 2BVFA 3W8XA 3S1EA 2O3GA 1WYGA 3FW9A 1QLTA 5ADZA 1AHUA 1N61C 2Y3RA 2I0KA 2VFVA 2P13A 1I19A 2OAIA 2Y4GA 4BCAA 4BBYA 1E8FA 3NVVB 2MBRA 1W1LA 3FWAA 3W8WA 4BC9A 2QPMA 1FFUC 2RK5A 3D2HA 5K8EA 2WDWA 1W1RA 1N63C 3D2DA 5FXFA 2UUUA 1N60C 1F0XA 3BW7A 4MLAA 1W1QA 2BVGA 3ETRB 4UD8A 3TSHA 3D2JA 1N62C 5AE3A 4OALA 3NVYB 2VAOA 3S1FA 3HRDC 2Y08A 5G5GB 4DNSA 2W55A 4HG0A 4JAYA 5AWVA 2W3RA 4JB1A 1W1JA 2VFSA 5I1WA 1W1SA 3HSUA 1QLUA 3FW8A 1AHVA 3SR6B 1WVEA 4PWCA 5G5HB 5L6GA 1UXYA 1FO4A 3B9JB 1RM6B 1W1KA 4PYTA 3DQ0A 3RJ8A 1E8GA 4PVEA 3LAEA 2Y3SA 5HMRA 3JS8A 2Q4WA 3EUB3 5I1VA 1MBBA 1T3QC 5FXDA 3TSJA 3AM9A 1E0YA 4PVJA 1FIQB 3NS1B 2IPIA 2GQUA 5FXPA 3POPA 4PVKA 2EXRA 1E8HA 2GQTA 2E3TA 1V97A 1MBTA 2R2ZA 2QKNA 1N5WC 3NRZB 4PZFA 4BC7A 1DIQA 1HSKA 1FFVC 1WVFA 1JRPA 2BVHA 5HQXA 3PM9A 5AE1A 2AXRA 3W8ZA 3GSYA 1VAOA 5D79A 1DIIA 3FW7A 3NVZB 1N5XA 1VDVA 3VTEA 1SB3B 3LLBA 2VFRA 2VFUA 3DEDA 1ZXIC 3S1DA 1ZR6A 3AN1A 2YVSA 2PLSA 4EC3A 2R8DA 5L6FA 2PLIA 3AMZA 2NQWA 2W54A 3TX1A 1W1MA 2VFTA 3I99A 2P4PA 5AE2A 1AHZA 2Q85A 3RJAA 3C0PA 1W1OA 3S1CA 4PVHA 5HHZA 4XLOA 3PQBA 2UUVA 2P3HA 4ML8A 5FXEA 1JROA 1DZNA 4O95A 2W3SA 3NVWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZOH B;  3KJM A;  4PWB A;  2BVF A;  3W8X A;  3S1E A;  2O3G A;  1WYG A;  3FW9 A;  1QLT A;  5ADZ A;  1AHU A;  1N61 C;  2I0K A;  2VFV A;  2P13 A;  1I19 A;  2OAI A;  4BCA A;  4BBY A;  1E8F A;  3NVV B;  2MBR A;  1W1L A;  3FWA A;  3W8W A;  4BC9 A;  2QPM A;  1FFU C;  2RK5 A;  3D2H A;  1W1R A;  1N63 C;  3D2D A;  5FXF A;  1N60 C;  1F0X A;  3BW7 A;  4MLA A;  1W1Q A;  2BVG A;  3ETR B;  4UD8 A;  3TSH A;  3D2J A;  1N62 C;  5AE3 A;  4OAL A;  3NVY B;  2VAO A;  3S1F A;  3HRD C;  5G5G B;  4DNS A;  2W55 A;  4HG0 A;  4JAY A;  2W3R A;  4JB1 A;  1W1J A;  2VFS A;  1W1S A;  1QLU A;  3FW8 A;  1AHV A;  3SR6 B;  1WVE A;  4PWC A;  5G5H B;  1UXY A;  1FO4 A;  3B9J B;  1RM6 B;  1W1K A;  4PYT A;  3DQ0 A;  1E8G A;  4PVE A;  3LAE A;  5HMR A;  3JS8 A;  2Q4W A;  3EUB 3;  1MBB A;  1T3Q C;  5FXD A;  3TSJ A;  3AM9 A;  1E0Y A;  4PVJ A;  1FIQ B;  3NS1 B;  2GQU A;  5FXP A;  4PVK A;  2EXR A;  1E8H A;  2GQT A;  2E3T A;  1V97 A;  1MBT A;  2R2Z A;  2QKN A;  1N5W C;  3NRZ B;  4PZF A;  4BC7 A;  1DIQ A;  1HSK A;  1FFV C;  1WVF A;  1JRP A;  2BVH A;  5HQX A;  3PM9 A;  5AE1 A;  2AXR A;  3W8Z A;  3GSY A;  1VAO A;  5D79 A;  1DII A;  3FW7 A;  3NVZ B;  1N5X A;  1VDV A;  3VTE A;  1SB3 B;  3LLB A;  2VFR A;  2VFU A;  3DED A;  1ZXI C;  3S1D A;  1ZR6 A;  3AN1 A;  2YVS A;  2PLS A;  4EC3 A;  2R8D A;  2PLI A;  3AMZ A;  2NQW A;  2W54 A;  3TX1 A;  1W1M A;  2VFT A;  3I99 A;  2P4P A;  5AE2 A;  1AHZ A;  2Q85 A;  3C0P A;  1W1O A;  3S1C A;  4PVH A;  5HHZ A;  4XLO A;  2P3H A;  4ML8 A;  5FXE A;  1JRO A;  1DZN A;  4O95 A;  2W3S A;  3NVW B; 
#chains in the Genus database with same CATH topology
 4ZOH B;  3KJM A;  4PWB A;  2BVF A;  3W8X A;  3S1E A;  2O3G A;  1WYG A;  3FW9 A;  1QLT A;  5ADZ A;  1AHU A;  1N61 C;  2Y3R A;  2I0K A;  2VFV A;  2P13 A;  1I19 A;  2OAI A;  2Y4G A;  4BCA A;  4BBY A;  1E8F A;  3NVV B;  2MBR A;  1W1L A;  3FWA A;  3W8W A;  4BC9 A;  2QPM A;  1FFU C;  2RK5 A;  3D2H A;  5K8E A;  2WDW A;  1W1R A;  1N63 C;  3D2D A;  5FXF A;  2UUU A;  1N60 C;  1F0X A;  3BW7 A;  4MLA A;  1W1Q A;  2BVG A;  3ETR B;  4UD8 A;  3TSH A;  3D2J A;  1N62 C;  5AE3 A;  4OAL A;  3NVY B;  2VAO A;  3S1F A;  3HRD C;  2Y08 A;  5G5G B;  4DNS A;  2W55 A;  4HG0 A;  4JAY A;  5AWV A;  2W3R A;  4JB1 A;  3EJD B;  1W1J A;  2VFS A;  5I1W A;  1W1S A;  3HSU A;  1QLU A;  3FW8 A;  1AHV A;  3SR6 B;  1WVE A;  4PWC A;  5G5H B;  5L6G A;  1UXY A;  1FO4 A;  3B9J B;  1RM6 B;  1W1K A;  4PYT A;  3DQ0 A;  3RJ8 A;  1E8G A;  4PVE A;  3LAE A;  2Y3S A;  5HMR A;  3JS8 A;  2Q4W A;  3EUB 3;  5I1V A;  1MBB A;  1T3Q C;  5FXD A;  3TSJ A;  3AM9 A;  1E0Y A;  4PVJ A;  1FIQ B;  3NS1 B;  2IPI A;  2GQU A;  5FXP A;  3POP A;  4PVK A;  2EXR A;  1E8H A;  2GQT A;  2E3T A;  1V97 A;  1MBT A;  2R2Z A;  2QKN A;  1N5W C;  3NRZ B;  4PZF A;  4BC7 A;  1DIQ A;  1HSK A;  1FFV C;  1WVF A;  1JRP A;  2BVH A;  3EJB B;  5HQX A;  3PM9 A;  3EJE B;  5AE1 A;  2AXR A;  3W8Z A;  3GSY A;  1VAO A;  5D79 A;  1DII A;  3FW7 A;  3NVZ B;  1N5X A;  1VDV A;  3VTE A;  1SB3 B;  3LLB A;  2VFR A;  2VFU A;  3DED A;  1ZXI C;  3S1D A;  1ZR6 A;  3AN1 A;  2YVS A;  2PLS A;  4EC3 A;  2R8D A;  5L6F A;  2PLI A;  3AMZ A;  2NQW A;  2W54 A;  3TX1 A;  1W1M A;  2VFT A;  3I99 A;  2P4P A;  5AE2 A;  1AHZ A;  2Q85 A;  3RJA A;  3C0P A;  1W1O A;  3S1C A;  4PVH A;  5HHZ A;  4XLO A;  3PQB A;  2UUV A;  2P3H A;  4ML8 A;  5FXE A;  1JRO A;  1DZN A;  4O95 A;  2W3S A;  3NVW B; 
#chains in the Genus database with same CATH homology
 4ZOH B;  3KJM A;  4PWB A;  2BVF A;  3W8X A;  3S1E A;  2O3G A;  1WYG A;  3FW9 A;  1QLT A;  5ADZ A;  1AHU A;  1N61 C;  2Y3R A;  2I0K A;  2VFV A;  2P13 A;  1I19 A;  2OAI A;  2Y4G A;  4BCA A;  4BBY A;  1E8F A;  3NVV B;  2MBR A;  1W1L A;  3FWA A;  3W8W A;  4BC9 A;  2QPM A;  1FFU C;  2RK5 A;  3D2H A;  5K8E A;  2WDW A;  1W1R A;  1N63 C;  3D2D A;  5FXF A;  2UUU A;  1N60 C;  1F0X A;  3BW7 A;  4MLA A;  1W1Q A;  2BVG A;  3ETR B;  4UD8 A;  3TSH A;  3D2J A;  1N62 C;  5AE3 A;  4OAL A;  3NVY B;  2VAO A;  3S1F A;  3HRD C;  2Y08 A;  5G5G B;  4DNS A;  2W55 A;  4HG0 A;  4JAY A;  5AWV A;  2W3R A;  4JB1 A;  1W1J A;  2VFS A;  5I1W A;  1W1S A;  3HSU A;  1QLU A;  3FW8 A;  1AHV A;  3SR6 B;  1WVE A;  4PWC A;  5G5H B;  5L6G A;  1UXY A;  1FO4 A;  3B9J B;  1RM6 B;  1W1K A;  4PYT A;  3DQ0 A;  3RJ8 A;  1E8G A;  4PVE A;  3LAE A;  2Y3S A;  5HMR A;  3JS8 A;  2Q4W A;  3EUB 3;  5I1V A;  1MBB A;  1T3Q C;  5FXD A;  3TSJ A;  3AM9 A;  1E0Y A;  4PVJ A;  1FIQ B;  3NS1 B;  2IPI A;  2GQU A;  5FXP A;  3POP A;  4PVK A;  2EXR A;  1E8H A;  2GQT A;  2E3T A;  1V97 A;  1MBT A;  2R2Z A;  2QKN A;  1N5W C;  3NRZ B;  4PZF A;  4BC7 A;  1DIQ A;  1HSK A;  1FFV C;  1WVF A;  1JRP A;  2BVH A;  5HQX A;  3PM9 A;  5AE1 A;  2AXR A;  3W8Z A;  3GSY A;  1VAO A;  5D79 A;  1DII A;  3FW7 A;  3NVZ B;  1N5X A;  1VDV A;  3VTE A;  1SB3 B;  3LLB A;  2VFR A;  2VFU A;  3DED A;  1ZXI C;  3S1D A;  1ZR6 A;  3AN1 A;  2YVS A;  2PLS A;  4EC3 A;  2R8D A;  5L6F A;  2PLI A;  3AMZ A;  2NQW A;  2W54 A;  3TX1 A;  1W1M A;  2VFT A;  3I99 A;  2P4P A;  5AE2 A;  1AHZ A;  2Q85 A;  3RJA A;  3C0P A;  1W1O A;  3S1C A;  4PVH A;  5HHZ A;  4XLO A;  3PQB A;  2UUV A;  2P3H A;  4ML8 A;  5FXE A;  1JRO A;  1DZN A;  4O95 A;  2W3S A;  3NVW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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