3S1DA

Glu381ser mutant of maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
total genus 170
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1dA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1dA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1dA03
3VTEA 2QPMA 1W1QA 2VFTA 3NS1B 4PWBA 1MBTA 2VAOA 1FO4A 3LAEA 1WVEA 3NVWB 2EXRA 3C0PA 3S1FA 1MBBA 3S1CA 2RK5A 4JB1A 3NVZB 1FIQB 4ZOHB 5AE3A 2NQWA 4PVKA 5HHZA 3DEDA 2OAIA 1QLUA 1F0XA 2R8DA 2MBRA 3AN1A 2VFRA 4JAYA 1JRPA 2P3HA 3ETRB 4OALA 1QLTA 2W3RA 5G5HB 2E3TA 1E0YA 2PLIA 1E8GA 5FXDA 1WVFA 4PVJA 5FXEA 5HQXA 2I0KA 4MLAA 4EC3A 1N62C 2W55A 1N5XA 3NVYB 1W1RA 3S1EA 1FFUC 1I19A 3KJMA 2Q85A 1W1OA 2VFVA 3AMZA 5FXFA 3BW7A 1AHZA 5HMRA 2P4PA 1ZR6A 3TX1A 2W54A 4PZFA 1RM6B 2P13A 1JROA 2VFSA 1DZNA 1E8HA 1N60C 3W8XA 4BC9A 3SR6B 2R2ZA 2YVSA 4HG0A 1N5WC 3TSHA 1FFVC 3FW7A 1ZXIC 3EUB3 3JS8A 1W1LA 4BC7A 2VFUA 1W1KA 3NVVB 1VDVA 3NRZB 3GSYA 3D2JA 2Q4WA 1AHVA 1T3QC 1W1MA 2BVHA 1DIIA 3PM9A 3W8ZA 1WYGA 1HSKA 4PWCA 3I99A 2QKNA 3S1DA 4PVEA 3W8WA 2AXRA 2PLSA 2GQUA 4O95A 4PYTA 1DIQA 1N61C 3HRDC 1V97A 3D2HA 2W3SA 5FXPA 3B9JB 4ML8A 5G5GB 5AE1A 5D79A 1UXYA 3FWAA 3FW8A 1AHUA 1E8FA 3AM9A 3DQ0A 3TSJA 4DNSA 3D2DA 2GQTA 1VAOA 2BVGA 2O3GA 1W1JA 5AE2A 4BCAA 4UD8A 4BBYA 1W1SA 2BVFA 4XLOA 1N63C 3FW9A 1SB3B 4PVHA 5ADZA 3LLBA
chains in the Genus database with same CATH superfamily
3VTEA 2QPMA 1W1QA 2VFTA 3NS1B 4PWBA 1MBTA 2VAOA 1FO4A 3LAEA 1WVEA 3NVWB 2EXRA 3C0PA 3S1FA 1MBBA 3EJDB 3S1CA 2RK5A 4JB1A 3NVZB 1FIQB 2IPIA 2Y4GA 4ZOHB 5AE3A 2NQWA 4PVKA 5HHZA 3DEDA 2OAIA 1QLUA 1F0XA 2R8DA 2MBRA 3RJ8A 3AN1A 2Y3RA 2VFRA 4JAYA 1JRPA 2P3HA 3ETRB 4OALA 1QLTA 5AWVA 2W3RA 5G5HB 2E3TA 1E0YA 2PLIA 1E8GA 5FXDA 5L6GA 3RJAA 1WVFA 4PVJA 5FXEA 3EJEB 5HQXA 2I0KA 4MLAA 4EC3A 1N62C 2W55A 1N5XA 3NVYB 1W1RA 3S1EA 1FFUC 1I19A 3KJMA 2Q85A 1W1OA 2Y08A 2VFVA 3AMZA 5FXFA 3BW7A 1AHZA 5HMRA 2P4PA 1ZR6A 3TX1A 2W54A 2UUUA 4PZFA 1RM6B 2P13A 1JROA 2VFSA 1DZNA 1E8HA 1N60C 5K8EA 3W8XA 4BC9A 3SR6B 2R2ZA 3EJBB 2YVSA 4HG0A 1N5WC 3TSHA 2Y3SA 1FFVC 5I1VA 3FW7A 1ZXIC 3EUB3 3JS8A 1W1LA 4BC7A 2VFUA 1W1KA 3NVVB 1VDVA 3NRZB 3GSYA 3D2JA 2Q4WA 2WDWA 1AHVA 1T3QC 1W1MA 2BVHA 1DIIA 3PM9A 3W8ZA 1WYGA 1HSKA 4PWCA 3I99A 2QKNA 3S1DA 4PVEA 3W8WA 2AXRA 2PLSA 2GQUA 4O95A 4PYTA 1DIQA 1N61C 3HRDC 1V97A 3D2HA 2W3SA 5FXPA 3B9JB 4ML8A 3HSUA 3POPA 5G5GB 2UUVA 5AE1A 5I1WA 5D79A 1UXYA 3FWAA 3FW8A 1AHUA 1E8FA 3AM9A 3PQBA 3DQ0A 3TSJA 4DNSA 3D2DA 5L6FA 2GQTA 1VAOA 2BVGA 2O3GA 1W1JA 5AE2A 4BCAA 4UD8A 4BBYA 1W1SA 2BVFA 4XLOA 1N63C 3FW9A 1SB3B 4PVHA 5ADZA 3LLBA
chains in the Genus database with same CATH topology
3VTEA 2QPMA 1W1QA 2VFTA 3NS1B 4PWBA 1MBTA 2VAOA 1FO4A 3LAEA 1WVEA 3NVWB 2EXRA 3C0PA 3S1FA 1MBBA 3S1CA 2RK5A 4JB1A 3NVZB 1FIQB 2IPIA 2Y4GA 4ZOHB 5AE3A 2NQWA 4PVKA 5HHZA 3DEDA 2OAIA 1QLUA 1F0XA 2R8DA 2MBRA 3RJ8A 3AN1A 2Y3RA 2VFRA 4JAYA 1JRPA 2P3HA 3ETRB 4OALA 1QLTA 5AWVA 2W3RA 5G5HB 2E3TA 1E0YA 2PLIA 1E8GA 5FXDA 5L6GA 3RJAA 1WVFA 4PVJA 5FXEA 5HQXA 2I0KA 4MLAA 4EC3A 1N62C 2W55A 1N5XA 3NVYB 1W1RA 3S1EA 1FFUC 1I19A 3KJMA 2Q85A 1W1OA 2Y08A 2VFVA 3AMZA 5FXFA 3BW7A 1AHZA 5HMRA 2P4PA 1ZR6A 3TX1A 2W54A 2UUUA 4PZFA 1RM6B 2P13A 1JROA 2VFSA 1DZNA 1E8HA 1N60C 5K8EA 3W8XA 4BC9A 3SR6B 2R2ZA 2YVSA 4HG0A 1N5WC 3TSHA 2Y3SA 1FFVC 5I1VA 3FW7A 1ZXIC 3EUB3 3JS8A 1W1LA 4BC7A 2VFUA 1W1KA 3NVVB 1VDVA 3NRZB 3GSYA 3D2JA 2Q4WA 2WDWA 1AHVA 1T3QC 1W1MA 2BVHA 1DIIA 3PM9A 3W8ZA 1WYGA 1HSKA 4PWCA 3I99A 2QKNA 3S1DA 4PVEA 3W8WA 2AXRA 2PLSA 2GQUA 4O95A 4PYTA 1DIQA 1N61C 3HRDC 1V97A 3D2HA 2W3SA 5FXPA 3B9JB 4ML8A 3HSUA 3POPA 5G5GB 2UUVA 5AE1A 5I1WA 5D79A 1UXYA 3FWAA 3FW8A 1AHUA 1E8FA 3AM9A 3PQBA 3DQ0A 3TSJA 4DNSA 3D2DA 5L6FA 2GQTA 1VAOA 2BVGA 2O3GA 1W1JA 5AE2A 4BCAA 4UD8A 4BBYA 1W1SA 2BVFA 4XLOA 1N63C 3FW9A 1SB3B 4PVHA 5ADZA 3LLBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VTE A;  2QPM A;  1W1Q A;  2VFT A;  3NS1 B;  4PWB A;  1MBT A;  2VAO A;  1FO4 A;  3LAE A;  1WVE A;  3NVW B;  2EXR A;  3C0P A;  3S1F A;  1MBB A;  3S1C A;  2RK5 A;  4JB1 A;  3NVZ B;  1FIQ B;  4ZOH B;  5AE3 A;  2NQW A;  4PVK A;  5HHZ A;  3DED A;  2OAI A;  1QLU A;  1F0X A;  2R8D A;  2MBR A;  3AN1 A;  2VFR A;  4JAY A;  1JRP A;  2P3H A;  3ETR B;  4OAL A;  1QLT A;  2W3R A;  5G5H B;  2E3T A;  1E0Y A;  2PLI A;  1E8G A;  5FXD A;  1WVF A;  4PVJ A;  5FXE A;  5HQX A;  2I0K A;  4MLA A;  4EC3 A;  1N62 C;  2W55 A;  1N5X A;  3NVY B;  1W1R A;  3S1E A;  1FFU C;  1I19 A;  3KJM A;  2Q85 A;  1W1O A;  2VFV A;  3AMZ A;  5FXF A;  3BW7 A;  1AHZ A;  5HMR A;  2P4P A;  1ZR6 A;  3TX1 A;  2W54 A;  4PZF A;  1RM6 B;  2P13 A;  1JRO A;  2VFS A;  1DZN A;  1E8H A;  1N60 C;  3W8X A;  4BC9 A;  3SR6 B;  2R2Z A;  2YVS A;  4HG0 A;  1N5W C;  3TSH A;  1FFV C;  3FW7 A;  1ZXI C;  3EUB 3;  3JS8 A;  1W1L A;  4BC7 A;  2VFU A;  1W1K A;  3NVV B;  1VDV A;  3NRZ B;  3GSY A;  3D2J A;  2Q4W A;  1AHV A;  1T3Q C;  1W1M A;  2BVH A;  1DII A;  3PM9 A;  3W8Z A;  1WYG A;  1HSK A;  4PWC A;  3I99 A;  2QKN A;  3S1D A;  4PVE A;  3W8W A;  2AXR A;  2PLS A;  2GQU A;  4O95 A;  4PYT A;  1DIQ A;  1N61 C;  3HRD C;  1V97 A;  3D2H A;  2W3S A;  5FXP A;  3B9J B;  4ML8 A;  5G5G B;  5AE1 A;  5D79 A;  1UXY A;  3FWA A;  3FW8 A;  1AHU A;  1E8F A;  3AM9 A;  3DQ0 A;  3TSJ A;  4DNS A;  3D2D A;  2GQT A;  1VAO A;  2BVG A;  2O3G A;  1W1J A;  5AE2 A;  4BCA A;  4UD8 A;  4BBY A;  1W1S A;  2BVF A;  4XLO A;  1N63 C;  3FW9 A;  1SB3 B;  4PVH A;  5ADZ A;  3LLB A; 
#chains in the Genus database with same CATH topology
 3VTE A;  2QPM A;  1W1Q A;  2VFT A;  3NS1 B;  4PWB A;  1MBT A;  2VAO A;  1FO4 A;  3LAE A;  1WVE A;  3NVW B;  2EXR A;  3C0P A;  3S1F A;  1MBB A;  3EJD B;  3S1C A;  2RK5 A;  4JB1 A;  3NVZ B;  1FIQ B;  2IPI A;  2Y4G A;  4ZOH B;  5AE3 A;  2NQW A;  4PVK A;  5HHZ A;  3DED A;  2OAI A;  1QLU A;  1F0X A;  2R8D A;  2MBR A;  3RJ8 A;  3AN1 A;  2Y3R A;  2VFR A;  4JAY A;  1JRP A;  2P3H A;  3ETR B;  4OAL A;  1QLT A;  5AWV A;  2W3R A;  5G5H B;  2E3T A;  1E0Y A;  2PLI A;  1E8G A;  5FXD A;  5L6G A;  3RJA A;  1WVF A;  4PVJ A;  5FXE A;  3EJE B;  5HQX A;  2I0K A;  4MLA A;  4EC3 A;  1N62 C;  2W55 A;  1N5X A;  3NVY B;  1W1R A;  3S1E A;  1FFU C;  1I19 A;  3KJM A;  2Q85 A;  1W1O A;  2Y08 A;  2VFV A;  3AMZ A;  5FXF A;  3BW7 A;  1AHZ A;  5HMR A;  2P4P A;  1ZR6 A;  3TX1 A;  2W54 A;  2UUU A;  4PZF A;  1RM6 B;  2P13 A;  1JRO A;  2VFS A;  1DZN A;  1E8H A;  1N60 C;  5K8E A;  3W8X A;  4BC9 A;  3SR6 B;  2R2Z A;  3EJB B;  2YVS A;  4HG0 A;  1N5W C;  3TSH A;  2Y3S A;  1FFV C;  5I1V A;  3FW7 A;  1ZXI C;  3EUB 3;  3JS8 A;  1W1L A;  4BC7 A;  2VFU A;  1W1K A;  3NVV B;  1VDV A;  3NRZ B;  3GSY A;  3D2J A;  2Q4W A;  2WDW A;  1AHV A;  1T3Q C;  1W1M A;  2BVH A;  1DII A;  3PM9 A;  3W8Z A;  1WYG A;  1HSK A;  4PWC A;  3I99 A;  2QKN A;  3S1D A;  4PVE A;  3W8W A;  2AXR A;  2PLS A;  2GQU A;  4O95 A;  4PYT A;  1DIQ A;  1N61 C;  3HRD C;  1V97 A;  3D2H A;  2W3S A;  5FXP A;  3B9J B;  4ML8 A;  3HSU A;  3POP A;  5G5G B;  2UUV A;  5AE1 A;  5I1W A;  5D79 A;  1UXY A;  3FWA A;  3FW8 A;  1AHU A;  1E8F A;  3AM9 A;  3PQB A;  3DQ0 A;  3TSJ A;  4DNS A;  3D2D A;  5L6F A;  2GQT A;  1VAO A;  2BVG A;  2O3G A;  1W1J A;  5AE2 A;  4BCA A;  4UD8 A;  4BBY A;  1W1S A;  2BVF A;  4XLO A;  1N63 C;  3FW9 A;  1SB3 B;  4PVH A;  5ADZ A;  3LLB A; 
#chains in the Genus database with same CATH homology
 3VTE A;  2QPM A;  1W1Q A;  2VFT A;  3NS1 B;  4PWB A;  1MBT A;  2VAO A;  1FO4 A;  3LAE A;  1WVE A;  3NVW B;  2EXR A;  3C0P A;  3S1F A;  1MBB A;  3S1C A;  2RK5 A;  4JB1 A;  3NVZ B;  1FIQ B;  2IPI A;  2Y4G A;  4ZOH B;  5AE3 A;  2NQW A;  4PVK A;  5HHZ A;  3DED A;  2OAI A;  1QLU A;  1F0X A;  2R8D A;  2MBR A;  3RJ8 A;  3AN1 A;  2Y3R A;  2VFR A;  4JAY A;  1JRP A;  2P3H A;  3ETR B;  4OAL A;  1QLT A;  5AWV A;  2W3R A;  5G5H B;  2E3T A;  1E0Y A;  2PLI A;  1E8G A;  5FXD A;  5L6G A;  3RJA A;  1WVF A;  4PVJ A;  5FXE A;  5HQX A;  2I0K A;  4MLA A;  4EC3 A;  1N62 C;  2W55 A;  1N5X A;  3NVY B;  1W1R A;  3S1E A;  1FFU C;  1I19 A;  3KJM A;  2Q85 A;  1W1O A;  2Y08 A;  2VFV A;  3AMZ A;  5FXF A;  3BW7 A;  1AHZ A;  5HMR A;  2P4P A;  1ZR6 A;  3TX1 A;  2W54 A;  2UUU A;  4PZF A;  1RM6 B;  2P13 A;  1JRO A;  2VFS A;  1DZN A;  1E8H A;  1N60 C;  5K8E A;  3W8X A;  4BC9 A;  3SR6 B;  2R2Z A;  2YVS A;  4HG0 A;  1N5W C;  3TSH A;  2Y3S A;  1FFV C;  5I1V A;  3FW7 A;  1ZXI C;  3EUB 3;  3JS8 A;  1W1L A;  4BC7 A;  2VFU A;  1W1K A;  3NVV B;  1VDV A;  3NRZ B;  3GSY A;  3D2J A;  2Q4W A;  2WDW A;  1AHV A;  1T3Q C;  1W1M A;  2BVH A;  1DII A;  3PM9 A;  3W8Z A;  1WYG A;  1HSK A;  4PWC A;  3I99 A;  2QKN A;  3S1D A;  4PVE A;  3W8W A;  2AXR A;  2PLS A;  2GQU A;  4O95 A;  4PYT A;  1DIQ A;  1N61 C;  3HRD C;  1V97 A;  3D2H A;  2W3S A;  5FXP A;  3B9J B;  4ML8 A;  3HSU A;  3POP A;  5G5G B;  2UUV A;  5AE1 A;  5I1W A;  5D79 A;  1UXY A;  3FWA A;  3FW8 A;  1AHU A;  1E8F A;  3AM9 A;  3PQB A;  3DQ0 A;  3TSJ A;  4DNS A;  3D2D A;  5L6F A;  2GQT A;  1VAO A;  2BVG A;  2O3G A;  1W1J A;  5AE2 A;  4BCA A;  4UD8 A;  4BBY A;  1W1S A;  2BVF A;  4XLO A;  1N63 C;  3FW9 A;  1SB3 B;  4PVH A;  5ADZ A;  3LLB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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