3S1DA

Glu381ser mutant of maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
total genus 170
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1dA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1dA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1dA03
2P3HA 1E8FA 3S1EA 5FXDA 4PZFA 3PM9A 1FFVC 5FXFA 2RK5A 4DNSA 4PVEA 2EXRA 1VDVA 2E3TA 4MLAA 1WVFA 5HMRA 5AE3A 2VFVA 4ML8A 2R8DA 1N61C 2BVFA 1N5WC 1E8HA 2MBRA 1VAOA 1W1LA 1MBTA 3TSJA 3NVWB 4PWBA 4PVHA 4UD8A 3TX1A 1T3QC 2PLIA 4JB1A 1E0YA 1QLUA 2VAOA 3AMZA 1MBBA 5FXPA 3DQ0A 2Q4WA 3FW7A 5G5HB 1FFUC 4ZOHB 1FIQB 1ZXIC 3W8ZA 2P13A 2O3GA 2OAIA 2VFSA 3HRDC 3B9JB 3ETRB 1FO4A 5HQXA 5AE1A 5D79A 1AHZA 2W3RA 3NVZB 5AE2A 4PVKA 1WVEA 3JS8A 3W8WA 3DEDA 1WYGA 3NS1B 4BCAA 2PLSA 4PWCA 3EUB3 3D2JA 3I99A 3NVVB 1W1KA 3W8XA 5G5GB 2P4PA 2BVHA 4O95A 3NVYB 1DIIA 2VFTA 3FW8A 2YVSA 4OALA 4JAYA 5FXEA 4HG0A 1N5XA 3NRZB 1AHVA 1QLTA 2VFRA 2W55A 5ADZA 5HHZA 4PYTA 2GQUA 4PVJA 3S1DA 1E8GA 4XLOA 4BBYA 1JROA 1W1OA 1V97A 3KJMA 1N62C 2BVGA 1JRPA 3VTEA 4BC9A 2I0KA 1W1MA 2AXRA 3BW7A 1DIQA 1SB3B 2VFUA 1W1SA 4BC7A 2W3SA 2GQTA 3LAEA 3D2DA 1F0XA 1AHUA 1ZR6A 4EC3A 1W1QA 1RM6B 2QKNA 1N63C 2QPMA 3C0PA 1I19A 3S1FA 1UXYA 2W54A 2NQWA 3FWAA 3D2HA 3S1CA 3AM9A 3TSHA 2Q85A 1DZNA 1W1JA 3AN1A 3GSYA 1N60C 1W1RA 1HSKA 3FW9A 3LLBA 2R2ZA 3SR6B
chains in the Genus database with same CATH superfamily
2P3HA 1E8FA 3S1EA 5FXDA 4PZFA 3PM9A 1FFVC 5FXFA 2RK5A 4DNSA 4PVEA 3EJEB 3RJAA 2EXRA 1VDVA 2E3TA 4MLAA 1WVFA 5HMRA 5AE3A 2VFVA 5L6GA 2Y3SA 4ML8A 2R8DA 1N61C 2BVFA 1N5WC 1E8HA 2MBRA 2Y3RA 5I1VA 3POPA 1VAOA 1W1LA 1MBTA 3NVWB 3TSJA 4PWBA 4PVHA 4UD8A 3TX1A 5AWVA 1T3QC 2PLIA 4JB1A 1E0YA 1QLUA 2VAOA 3AMZA 1MBBA 5FXPA 3DQ0A 2Q4WA 3FW7A 5G5HB 1FFUC 4ZOHB 1FIQB 1ZXIC 3W8ZA 2P13A 2O3GA 2OAIA 2VFSA 3HRDC 3B9JB 3ETRB 1FO4A 5HQXA 5AE1A 5D79A 1AHZA 2W3RA 2Y08A 3NVZB 5AE2A 4PVKA 2IPIA 1WVEA 3JS8A 3W8WA 3DEDA 1WYGA 3NS1B 2Y4GA 4BCAA 2UUVA 2PLSA 3HSUA 4PWCA 3EUB3 3D2JA 3I99A 3NVVB 1W1KA 3W8XA 3RJ8A 5G5GB 3PQBA 2P4PA 2BVHA 4O95A 3NVYB 1DIIA 2VFTA 5I1WA 3EJBB 3FW8A 2YVSA 4OALA 4JAYA 5FXEA 4HG0A 1N5XA 3NRZB 1AHVA 1QLTA 5L6FA 2VFRA 2W55A 5ADZA 5HHZA 4PYTA 2GQUA 4PVJA 3S1DA 5K8EA 1E8GA 4XLOA 4BBYA 1JROA 1W1OA 1V97A 3KJMA 1N62C 2BVGA 1JRPA 3VTEA 4BC9A 2I0KA 1W1MA 2AXRA 3BW7A 1DIQA 1SB3B 3EJDB 2VFUA 1W1SA 4BC7A 2W3SA 2GQTA 3LAEA 3D2DA 1F0XA 1AHUA 1ZR6A 4EC3A 1W1QA 1RM6B 2WDWA 2QKNA 1N63C 2QPMA 3C0PA 1I19A 3S1FA 1UXYA 2W54A 2NQWA 3FWAA 3D2HA 3S1CA 3AM9A 3TSHA 2Q85A 2UUUA 1DZNA 1W1JA 3AN1A 3GSYA 1N60C 1W1RA 1HSKA 3FW9A 3LLBA 2R2ZA 3SR6B
chains in the Genus database with same CATH topology
2P3HA 1E8FA 3S1EA 5FXDA 4PZFA 3PM9A 1FFVC 5FXFA 2RK5A 4DNSA 4PVEA 3RJAA 2EXRA 1VDVA 2E3TA 4MLAA 1WVFA 5HMRA 5AE3A 2VFVA 5L6GA 2Y3SA 4ML8A 2R8DA 1N61C 2BVFA 1N5WC 1E8HA 2MBRA 2Y3RA 5I1VA 3POPA 1VAOA 1W1LA 1MBTA 3TSJA 3NVWB 4PWBA 4PVHA 4UD8A 3TX1A 5AWVA 1T3QC 2PLIA 4JB1A 1E0YA 1QLUA 2VAOA 3AMZA 1MBBA 5FXPA 3DQ0A 2Q4WA 3FW7A 5G5HB 1FFUC 4ZOHB 1FIQB 1ZXIC 3W8ZA 2P13A 2O3GA 2OAIA 2VFSA 3HRDC 3B9JB 3ETRB 1FO4A 5HQXA 5AE1A 5D79A 1AHZA 2W3RA 2Y08A 3NVZB 5AE2A 4PVKA 2IPIA 1WVEA 3JS8A 3W8WA 3DEDA 1WYGA 3NS1B 2Y4GA 4BCAA 2UUVA 2PLSA 3HSUA 4PWCA 3EUB3 3D2JA 3I99A 3NVVB 1W1KA 3W8XA 3RJ8A 5G5GB 3PQBA 2P4PA 2BVHA 4O95A 3NVYB 1DIIA 2VFTA 5I1WA 3FW8A 2YVSA 4OALA 4JAYA 5FXEA 4HG0A 1N5XA 3NRZB 1AHVA 1QLTA 5L6FA 2VFRA 2W55A 5ADZA 5HHZA 4PYTA 2GQUA 4PVJA 3S1DA 5K8EA 1E8GA 4XLOA 4BBYA 1JROA 1W1OA 1V97A 3KJMA 1N62C 2BVGA 1JRPA 3VTEA 4BC9A 2I0KA 1W1MA 2AXRA 3BW7A 1DIQA 1SB3B 2VFUA 1W1SA 4BC7A 2W3SA 2GQTA 3LAEA 3D2DA 1F0XA 1AHUA 1ZR6A 4EC3A 1W1QA 1RM6B 2WDWA 2QKNA 1N63C 2QPMA 3C0PA 1I19A 3S1FA 1UXYA 2W54A 2NQWA 3FWAA 3D2HA 3S1CA 3AM9A 3TSHA 2Q85A 2UUUA 1DZNA 1W1JA 3AN1A 3GSYA 1N60C 1W1RA 1HSKA 3FW9A 3LLBA 2R2ZA 3SR6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P3H A;  1E8F A;  3S1E A;  5FXD A;  4PZF A;  3PM9 A;  1FFV C;  5FXF A;  2RK5 A;  4DNS A;  4PVE A;  2EXR A;  1VDV A;  2E3T A;  4MLA A;  1WVF A;  5HMR A;  5AE3 A;  2VFV A;  4ML8 A;  2R8D A;  1N61 C;  2BVF A;  1N5W C;  1E8H A;  2MBR A;  1VAO A;  1W1L A;  1MBT A;  3TSJ A;  3NVW B;  4PWB A;  4PVH A;  4UD8 A;  3TX1 A;  1T3Q C;  2PLI A;  4JB1 A;  1E0Y A;  1QLU A;  2VAO A;  3AMZ A;  1MBB A;  5FXP A;  3DQ0 A;  2Q4W A;  3FW7 A;  5G5H B;  1FFU C;  4ZOH B;  1FIQ B;  1ZXI C;  3W8Z A;  2P13 A;  2O3G A;  2OAI A;  2VFS A;  3HRD C;  3B9J B;  3ETR B;  1FO4 A;  5HQX A;  5AE1 A;  5D79 A;  1AHZ A;  2W3R A;  3NVZ B;  5AE2 A;  4PVK A;  1WVE A;  3JS8 A;  3W8W A;  3DED A;  1WYG A;  3NS1 B;  4BCA A;  2PLS A;  4PWC A;  3EUB 3;  3D2J A;  3I99 A;  3NVV B;  1W1K A;  3W8X A;  5G5G B;  2P4P A;  2BVH A;  4O95 A;  3NVY B;  1DII A;  2VFT A;  3FW8 A;  2YVS A;  4OAL A;  4JAY A;  5FXE A;  4HG0 A;  1N5X A;  3NRZ B;  1AHV A;  1QLT A;  2VFR A;  2W55 A;  5ADZ A;  5HHZ A;  4PYT A;  2GQU A;  4PVJ A;  3S1D A;  1E8G A;  4XLO A;  4BBY A;  1JRO A;  1W1O A;  1V97 A;  3KJM A;  1N62 C;  2BVG A;  1JRP A;  3VTE A;  4BC9 A;  2I0K A;  1W1M A;  2AXR A;  3BW7 A;  1DIQ A;  1SB3 B;  2VFU A;  1W1S A;  4BC7 A;  2W3S A;  2GQT A;  3LAE A;  3D2D A;  1F0X A;  1AHU A;  1ZR6 A;  4EC3 A;  1W1Q A;  1RM6 B;  2QKN A;  1N63 C;  2QPM A;  3C0P A;  1I19 A;  3S1F A;  1UXY A;  2W54 A;  2NQW A;  3FWA A;  3D2H A;  3S1C A;  3AM9 A;  3TSH A;  2Q85 A;  1DZN A;  1W1J A;  3AN1 A;  3GSY A;  1N60 C;  1W1R A;  1HSK A;  3FW9 A;  3LLB A;  2R2Z A;  3SR6 B; 
#chains in the Genus database with same CATH topology
 2P3H A;  1E8F A;  3S1E A;  5FXD A;  4PZF A;  3PM9 A;  1FFV C;  5FXF A;  2RK5 A;  4DNS A;  4PVE A;  3EJE B;  3RJA A;  2EXR A;  1VDV A;  2E3T A;  4MLA A;  1WVF A;  5HMR A;  5AE3 A;  2VFV A;  5L6G A;  2Y3S A;  4ML8 A;  2R8D A;  1N61 C;  2BVF A;  1N5W C;  1E8H A;  2MBR A;  2Y3R A;  5I1V A;  3POP A;  1VAO A;  1W1L A;  1MBT A;  3NVW B;  3TSJ A;  4PWB A;  4PVH A;  4UD8 A;  3TX1 A;  5AWV A;  1T3Q C;  2PLI A;  4JB1 A;  1E0Y A;  1QLU A;  2VAO A;  3AMZ A;  1MBB A;  5FXP A;  3DQ0 A;  2Q4W A;  3FW7 A;  5G5H B;  1FFU C;  4ZOH B;  1FIQ B;  1ZXI C;  3W8Z A;  2P13 A;  2O3G A;  2OAI A;  2VFS A;  3HRD C;  3B9J B;  3ETR B;  1FO4 A;  5HQX A;  5AE1 A;  5D79 A;  1AHZ A;  2W3R A;  2Y08 A;  3NVZ B;  5AE2 A;  4PVK A;  2IPI A;  1WVE A;  3JS8 A;  3W8W A;  3DED A;  1WYG A;  3NS1 B;  2Y4G A;  4BCA A;  2UUV A;  2PLS A;  3HSU A;  4PWC A;  3EUB 3;  3D2J A;  3I99 A;  3NVV B;  1W1K A;  3W8X A;  3RJ8 A;  5G5G B;  3PQB A;  2P4P A;  2BVH A;  4O95 A;  3NVY B;  1DII A;  2VFT A;  5I1W A;  3EJB B;  3FW8 A;  2YVS A;  4OAL A;  4JAY A;  5FXE A;  4HG0 A;  1N5X A;  3NRZ B;  1AHV A;  1QLT A;  5L6F A;  2VFR A;  2W55 A;  5ADZ A;  5HHZ A;  4PYT A;  2GQU A;  4PVJ A;  3S1D A;  5K8E A;  1E8G A;  4XLO A;  4BBY A;  1JRO A;  1W1O A;  1V97 A;  3KJM A;  1N62 C;  2BVG A;  1JRP A;  3VTE A;  4BC9 A;  2I0K A;  1W1M A;  2AXR A;  3BW7 A;  1DIQ A;  1SB3 B;  3EJD B;  2VFU A;  1W1S A;  4BC7 A;  2W3S A;  2GQT A;  3LAE A;  3D2D A;  1F0X A;  1AHU A;  1ZR6 A;  4EC3 A;  1W1Q A;  1RM6 B;  2WDW A;  2QKN A;  1N63 C;  2QPM A;  3C0P A;  1I19 A;  3S1F A;  1UXY A;  2W54 A;  2NQW A;  3FWA A;  3D2H A;  3S1C A;  3AM9 A;  3TSH A;  2Q85 A;  2UUU A;  1DZN A;  1W1J A;  3AN1 A;  3GSY A;  1N60 C;  1W1R A;  1HSK A;  3FW9 A;  3LLB A;  2R2Z A;  3SR6 B; 
#chains in the Genus database with same CATH homology
 2P3H A;  1E8F A;  3S1E A;  5FXD A;  4PZF A;  3PM9 A;  1FFV C;  5FXF A;  2RK5 A;  4DNS A;  4PVE A;  3RJA A;  2EXR A;  1VDV A;  2E3T A;  4MLA A;  1WVF A;  5HMR A;  5AE3 A;  2VFV A;  5L6G A;  2Y3S A;  4ML8 A;  2R8D A;  1N61 C;  2BVF A;  1N5W C;  1E8H A;  2MBR A;  2Y3R A;  5I1V A;  3POP A;  1VAO A;  1W1L A;  1MBT A;  3TSJ A;  3NVW B;  4PWB A;  4PVH A;  4UD8 A;  3TX1 A;  5AWV A;  1T3Q C;  2PLI A;  4JB1 A;  1E0Y A;  1QLU A;  2VAO A;  3AMZ A;  1MBB A;  5FXP A;  3DQ0 A;  2Q4W A;  3FW7 A;  5G5H B;  1FFU C;  4ZOH B;  1FIQ B;  1ZXI C;  3W8Z A;  2P13 A;  2O3G A;  2OAI A;  2VFS A;  3HRD C;  3B9J B;  3ETR B;  1FO4 A;  5HQX A;  5AE1 A;  5D79 A;  1AHZ A;  2W3R A;  2Y08 A;  3NVZ B;  5AE2 A;  4PVK A;  2IPI A;  1WVE A;  3JS8 A;  3W8W A;  3DED A;  1WYG A;  3NS1 B;  2Y4G A;  4BCA A;  2UUV A;  2PLS A;  3HSU A;  4PWC A;  3EUB 3;  3D2J A;  3I99 A;  3NVV B;  1W1K A;  3W8X A;  3RJ8 A;  5G5G B;  3PQB A;  2P4P A;  2BVH A;  4O95 A;  3NVY B;  1DII A;  2VFT A;  5I1W A;  3FW8 A;  2YVS A;  4OAL A;  4JAY A;  5FXE A;  4HG0 A;  1N5X A;  3NRZ B;  1AHV A;  1QLT A;  5L6F A;  2VFR A;  2W55 A;  5ADZ A;  5HHZ A;  4PYT A;  2GQU A;  4PVJ A;  3S1D A;  5K8E A;  1E8G A;  4XLO A;  4BBY A;  1JRO A;  1W1O A;  1V97 A;  3KJM A;  1N62 C;  2BVG A;  1JRP A;  3VTE A;  4BC9 A;  2I0K A;  1W1M A;  2AXR A;  3BW7 A;  1DIQ A;  1SB3 B;  2VFU A;  1W1S A;  4BC7 A;  2W3S A;  2GQT A;  3LAE A;  3D2D A;  1F0X A;  1AHU A;  1ZR6 A;  4EC3 A;  1W1Q A;  1RM6 B;  2WDW A;  2QKN A;  1N63 C;  2QPM A;  3C0P A;  1I19 A;  3S1F A;  1UXY A;  2W54 A;  2NQW A;  3FWA A;  3D2H A;  3S1C A;  3AM9 A;  3TSH A;  2Q85 A;  2UUU A;  1DZN A;  1W1J A;  3AN1 A;  3GSY A;  1N60 C;  1W1R A;  1HSK A;  3FW9 A;  3LLB A;  2R2Z A;  3SR6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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