3S1DA

Glu381ser mutant of maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
502
structure length
498
Chain Sequence
b'PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 170
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1dA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1dA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1dA03
1E0YA 2MBRA 1AHZA 2YVSA 2VFSA 4PWBA 3S1CA 1ZR6A 2PLSA 3D2HA 5FXDA 1VDVA 2GQTA 4PVHA 1DIIA 4PWCA 3KJMA 5FXFA 2VFUA 3FW7A 2E3TA 2AXRA 3DQ0A 4JB1A 4PVKA 1N5WC 1UXYA 3TSJA 4ZOHB 1DZNA 2VAOA 3D2DA 3JS8A 3NRZB 2W3RA 4XLOA 3BW7A 1N63C 1FFUC 3AMZA 3LLBA 5FXEA 1N61C 5G5GB 2P3HA 1QLTA 2Q4WA 3S1FA 3NVWB 1N62C 2P13A 4MLAA 5G5HB 3NVVB 1JROA 1FFVC 5AE1A 2VFVA 1W1SA 3TX1A 3D2JA 3C0PA 1N60C 2EXRA 4PYTA 5AE2A 3S1EA 2W55A 2BVGA 2BVFA 1DIQA 1RM6B 1W1RA 4JAYA 1E8GA 1E8FA 5HMRA 4ML8A 3W8ZA 3FW8A 3PM9A 3FW9A 1W1LA 1AHUA 3B9JB 3DEDA 2I0KA 1AHVA 4PVEA 1E8HA 3EUB3 2R2ZA 3NVZB 3NVYB 1W1KA 1VAOA 3I99A 5HHZA 1MBTA 3VTEA 2OAIA 5HQXA 2W3SA 4HG0A 2VFRA 2Q85A 4DNSA 1WYGA 4BC9A 4BBYA 1I19A 3GSYA 1QLUA 4EC3A 3LAEA 3TSHA 4PVJA 3SR6B 4UD8A 1W1JA 1FIQB 1T3QC 1WVFA 4PZFA 5AE3A 1FO4A 2O3GA 4OALA 2BVHA 1JRPA 2RK5A 2PLIA 3AM9A 1HSKA 1V97A 3AN1A 1F0XA 2QKNA 4O95A 3W8WA 3FWAA 2P4PA 2QPMA 3W8XA 3HRDC 1W1OA 1N5XA 2W54A 4BC7A 2R8DA 3NS1B 1SB3B 2VFTA 3ETRB 1W1MA 3S1DA 5FXPA 1ZXIC 5ADZA 1MBBA 1W1QA 4BCAA 2GQUA 2NQWA 1WVEA 5D79A
chains in the Genus database with same CATH superfamily
5I1WA 1E0YA 2MBRA 1AHZA 5I1VA 2YVSA 2VFSA 4PWBA 3S1CA 1ZR6A 2PLSA 3D2HA 5FXDA 1VDVA 2GQTA 4PVHA 1DIIA 4PWCA 3KJMA 5FXFA 2VFUA 3FW7A 2E3TA 2IPIA 2AXRA 3DQ0A 4JB1A 4PVKA 1N5WC 1UXYA 3TSJA 2WDWA 4ZOHB 3PQBA 1DZNA 2VAOA 3D2DA 3JS8A 3NRZB 2W3RA 4XLOA 3BW7A 1N63C 1FFUC 3RJAA 3AMZA 3LLBA 5FXEA 1N61C 5G5GB 2P3HA 1QLTA 2Q4WA 3NVWB 3S1FA 1N62C 2Y3SA 2P13A 4MLAA 5G5HB 3NVVB 1JROA 1FFVC 5AE1A 2VFVA 1W1SA 3TX1A 3D2JA 2UUVA 3C0PA 1N60C 3HSUA 2EXRA 4PYTA 5AE2A 3S1EA 2W55A 2BVGA 2BVFA 1DIQA 1RM6B 5AWVA 1W1RA 4JAYA 2Y4GA 1E8GA 3RJ8A 1E8FA 5HMRA 2Y3RA 4ML8A 3W8ZA 3FW8A 3PM9A 3FW9A 1W1LA 3EJBB 1AHUA 3B9JB 3DEDA 2I0KA 1AHVA 5L6FA 4PVEA 1E8HA 3EUB3 2R2ZA 3NVZB 3NVYB 1W1KA 1VAOA 3I99A 5HHZA 1MBTA 3VTEA 2OAIA 5HQXA 2W3SA 4HG0A 2VFRA 2Q85A 4DNSA 1WYGA 4BC9A 4BBYA 1I19A 3EJEB 1QLUA 3GSYA 4EC3A 3LAEA 3TSHA 4PVJA 2UUUA 3SR6B 4UD8A 1W1JA 1FIQB 1T3QC 1WVFA 4PZFA 5AE3A 1FO4A 2O3GA 4OALA 5L6GA 2BVHA 1JRPA 2RK5A 2PLIA 3AM9A 1HSKA 1V97A 3AN1A 1F0XA 2QKNA 4O95A 3EJDB 3W8WA 3FWAA 2P4PA 2QPMA 3W8XA 3HRDC 1W1OA 1N5XA 2W54A 4BC7A 2R8DA 3NS1B 1SB3B 2Y08A 2VFTA 3POPA 3ETRB 1W1MA 3S1DA 5FXPA 1ZXIC 5ADZA 1MBBA 5K8EA 1W1QA 4BCAA 2GQUA 2NQWA 1WVEA 5D79A
chains in the Genus database with same CATH topology
5I1WA 1E0YA 2MBRA 1AHZA 5I1VA 2YVSA 2VFSA 4PWBA 3S1CA 1ZR6A 2PLSA 3D2HA 5FXDA 1VDVA 2GQTA 4PVHA 1DIIA 4PWCA 3KJMA 5FXFA 2VFUA 3FW7A 2E3TA 2IPIA 2AXRA 3DQ0A 4JB1A 4PVKA 1N5WC 1UXYA 3TSJA 2WDWA 4ZOHB 3PQBA 1DZNA 2VAOA 3D2DA 3JS8A 3NRZB 2W3RA 4XLOA 3BW7A 1N63C 1FFUC 3RJAA 3AMZA 3LLBA 5FXEA 1N61C 5G5GB 2P3HA 1QLTA 2Q4WA 3S1FA 2Y3SA 1N62C 3NVWB 2P13A 4MLAA 5G5HB 3NVVB 1JROA 1FFVC 5AE1A 2VFVA 1W1SA 3TX1A 3D2JA 2UUVA 3C0PA 1N60C 3HSUA 2EXRA 4PYTA 5AE2A 3S1EA 2W55A 2BVGA 2BVFA 1DIQA 1RM6B 5AWVA 1W1RA 4JAYA 2Y4GA 1E8GA 3RJ8A 1E8FA 5HMRA 2Y3RA 4ML8A 3W8ZA 3FW8A 3PM9A 3FW9A 1W1LA 1AHUA 3B9JB 3DEDA 2I0KA 1AHVA 5L6FA 4PVEA 1E8HA 3EUB3 2R2ZA 3NVZB 3NVYB 1W1KA 1VAOA 3I99A 5HHZA 1MBTA 3VTEA 2OAIA 5HQXA 2W3SA 4HG0A 2VFRA 2Q85A 4DNSA 1WYGA 4BC9A 4BBYA 1I19A 3GSYA 1QLUA 4EC3A 3LAEA 3TSHA 4PVJA 2UUUA 3SR6B 4UD8A 1W1JA 1FIQB 1T3QC 1WVFA 4PZFA 5AE3A 1FO4A 2O3GA 4OALA 5L6GA 2BVHA 1JRPA 2RK5A 2PLIA 3AM9A 1HSKA 1V97A 3AN1A 1F0XA 2QKNA 4O95A 3W8WA 3FWAA 2P4PA 2QPMA 3W8XA 3HRDC 1W1OA 1N5XA 2W54A 4BC7A 2R8DA 3NS1B 1SB3B 2Y08A 2VFTA 3POPA 3ETRB 1W1MA 3S1DA 5FXPA 1ZXIC 5ADZA 1MBBA 5K8EA 1W1QA 4BCAA 2GQUA 2NQWA 1WVEA 5D79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E0Y A;  2MBR A;  1AHZ A;  2YVS A;  2VFS A;  4PWB A;  3S1C A;  1ZR6 A;  2PLS A;  3D2H A;  5FXD A;  1VDV A;  2GQT A;  4PVH A;  1DII A;  4PWC A;  3KJM A;  5FXF A;  2VFU A;  3FW7 A;  2E3T A;  2AXR A;  3DQ0 A;  4JB1 A;  4PVK A;  1N5W C;  1UXY A;  3TSJ A;  4ZOH B;  1DZN A;  2VAO A;  3D2D A;  3JS8 A;  3NRZ B;  2W3R A;  4XLO A;  3BW7 A;  1N63 C;  1FFU C;  3AMZ A;  3LLB A;  5FXE A;  1N61 C;  5G5G B;  2P3H A;  1QLT A;  2Q4W A;  3S1F A;  3NVW B;  1N62 C;  2P13 A;  4MLA A;  5G5H B;  3NVV B;  1JRO A;  1FFV C;  5AE1 A;  2VFV A;  1W1S A;  3TX1 A;  3D2J A;  3C0P A;  1N60 C;  2EXR A;  4PYT A;  5AE2 A;  3S1E A;  2W55 A;  2BVG A;  2BVF A;  1DIQ A;  1RM6 B;  1W1R A;  4JAY A;  1E8G A;  1E8F A;  5HMR A;  4ML8 A;  3W8Z A;  3FW8 A;  3PM9 A;  3FW9 A;  1W1L A;  1AHU A;  3B9J B;  3DED A;  2I0K A;  1AHV A;  4PVE A;  1E8H A;  3EUB 3;  2R2Z A;  3NVZ B;  3NVY B;  1W1K A;  1VAO A;  3I99 A;  5HHZ A;  1MBT A;  3VTE A;  2OAI A;  5HQX A;  2W3S A;  4HG0 A;  2VFR A;  2Q85 A;  4DNS A;  1WYG A;  4BC9 A;  4BBY A;  1I19 A;  3GSY A;  1QLU A;  4EC3 A;  3LAE A;  3TSH A;  4PVJ A;  3SR6 B;  4UD8 A;  1W1J A;  1FIQ B;  1T3Q C;  1WVF A;  4PZF A;  5AE3 A;  1FO4 A;  2O3G A;  4OAL A;  2BVH A;  1JRP A;  2RK5 A;  2PLI A;  3AM9 A;  1HSK A;  1V97 A;  3AN1 A;  1F0X A;  2QKN A;  4O95 A;  3W8W A;  3FWA A;  2P4P A;  2QPM A;  3W8X A;  3HRD C;  1W1O A;  1N5X A;  2W54 A;  4BC7 A;  2R8D A;  3NS1 B;  1SB3 B;  2VFT A;  3ETR B;  1W1M A;  3S1D A;  5FXP A;  1ZXI C;  5ADZ A;  1MBB A;  1W1Q A;  4BCA A;  2GQU A;  2NQW A;  1WVE A;  5D79 A; 
#chains in the Genus database with same CATH topology
 5I1W A;  1E0Y A;  2MBR A;  1AHZ A;  5I1V A;  2YVS A;  2VFS A;  4PWB A;  3S1C A;  1ZR6 A;  2PLS A;  3D2H A;  5FXD A;  1VDV A;  2GQT A;  4PVH A;  1DII A;  4PWC A;  3KJM A;  5FXF A;  2VFU A;  3FW7 A;  2E3T A;  2IPI A;  2AXR A;  3DQ0 A;  4JB1 A;  4PVK A;  1N5W C;  1UXY A;  3TSJ A;  2WDW A;  4ZOH B;  3PQB A;  1DZN A;  2VAO A;  3D2D A;  3JS8 A;  3NRZ B;  2W3R A;  4XLO A;  3BW7 A;  1N63 C;  1FFU C;  3RJA A;  3AMZ A;  3LLB A;  5FXE A;  1N61 C;  5G5G B;  2P3H A;  1QLT A;  2Q4W A;  3NVW B;  3S1F A;  1N62 C;  2Y3S A;  2P13 A;  4MLA A;  5G5H B;  3NVV B;  1JRO A;  1FFV C;  5AE1 A;  2VFV A;  1W1S A;  3TX1 A;  3D2J A;  2UUV A;  3C0P A;  1N60 C;  3HSU A;  2EXR A;  4PYT A;  5AE2 A;  3S1E A;  2W55 A;  2BVG A;  2BVF A;  1DIQ A;  1RM6 B;  5AWV A;  1W1R A;  4JAY A;  2Y4G A;  1E8G A;  3RJ8 A;  1E8F A;  5HMR A;  2Y3R A;  4ML8 A;  3W8Z A;  3FW8 A;  3PM9 A;  3FW9 A;  1W1L A;  3EJB B;  1AHU A;  3B9J B;  3DED A;  2I0K A;  1AHV A;  5L6F A;  4PVE A;  1E8H A;  3EUB 3;  2R2Z A;  3NVZ B;  3NVY B;  1W1K A;  1VAO A;  3I99 A;  5HHZ A;  1MBT A;  3VTE A;  2OAI A;  5HQX A;  2W3S A;  4HG0 A;  2VFR A;  2Q85 A;  4DNS A;  1WYG A;  4BC9 A;  4BBY A;  1I19 A;  3EJE B;  1QLU A;  3GSY A;  4EC3 A;  3LAE A;  3TSH A;  4PVJ A;  2UUU A;  3SR6 B;  4UD8 A;  1W1J A;  1FIQ B;  1T3Q C;  1WVF A;  4PZF A;  5AE3 A;  1FO4 A;  2O3G A;  4OAL A;  5L6G A;  2BVH A;  1JRP A;  2RK5 A;  2PLI A;  3AM9 A;  1HSK A;  1V97 A;  3AN1 A;  1F0X A;  2QKN A;  4O95 A;  3EJD B;  3W8W A;  3FWA A;  2P4P A;  2QPM A;  3W8X A;  3HRD C;  1W1O A;  1N5X A;  2W54 A;  4BC7 A;  2R8D A;  3NS1 B;  1SB3 B;  2Y08 A;  2VFT A;  3POP A;  3ETR B;  1W1M A;  3S1D A;  5FXP A;  1ZXI C;  5ADZ A;  1MBB A;  5K8E A;  1W1Q A;  4BCA A;  2GQU A;  2NQW A;  1WVE A;  5D79 A; 
#chains in the Genus database with same CATH homology
 5I1W A;  1E0Y A;  2MBR A;  1AHZ A;  5I1V A;  2YVS A;  2VFS A;  4PWB A;  3S1C A;  1ZR6 A;  2PLS A;  3D2H A;  5FXD A;  1VDV A;  2GQT A;  4PVH A;  1DII A;  4PWC A;  3KJM A;  5FXF A;  2VFU A;  3FW7 A;  2E3T A;  2IPI A;  2AXR A;  3DQ0 A;  4JB1 A;  4PVK A;  1N5W C;  1UXY A;  3TSJ A;  2WDW A;  4ZOH B;  3PQB A;  1DZN A;  2VAO A;  3D2D A;  3JS8 A;  3NRZ B;  2W3R A;  4XLO A;  3BW7 A;  1N63 C;  1FFU C;  3RJA A;  3AMZ A;  3LLB A;  5FXE A;  1N61 C;  5G5G B;  2P3H A;  1QLT A;  2Q4W A;  3S1F A;  2Y3S A;  1N62 C;  3NVW B;  2P13 A;  4MLA A;  5G5H B;  3NVV B;  1JRO A;  1FFV C;  5AE1 A;  2VFV A;  1W1S A;  3TX1 A;  3D2J A;  2UUV A;  3C0P A;  1N60 C;  3HSU A;  2EXR A;  4PYT A;  5AE2 A;  3S1E A;  2W55 A;  2BVG A;  2BVF A;  1DIQ A;  1RM6 B;  5AWV A;  1W1R A;  4JAY A;  2Y4G A;  1E8G A;  3RJ8 A;  1E8F A;  5HMR A;  2Y3R A;  4ML8 A;  3W8Z A;  3FW8 A;  3PM9 A;  3FW9 A;  1W1L A;  1AHU A;  3B9J B;  3DED A;  2I0K A;  1AHV A;  5L6F A;  4PVE A;  1E8H A;  3EUB 3;  2R2Z A;  3NVZ B;  3NVY B;  1W1K A;  1VAO A;  3I99 A;  5HHZ A;  1MBT A;  3VTE A;  2OAI A;  5HQX A;  2W3S A;  4HG0 A;  2VFR A;  2Q85 A;  4DNS A;  1WYG A;  4BC9 A;  4BBY A;  1I19 A;  3GSY A;  1QLU A;  4EC3 A;  3LAE A;  3TSH A;  4PVJ A;  2UUU A;  3SR6 B;  4UD8 A;  1W1J A;  1FIQ B;  1T3Q C;  1WVF A;  4PZF A;  5AE3 A;  1FO4 A;  2O3G A;  4OAL A;  5L6G A;  2BVH A;  1JRP A;  2RK5 A;  2PLI A;  3AM9 A;  1HSK A;  1V97 A;  3AN1 A;  1F0X A;  2QKN A;  4O95 A;  3W8W A;  3FWA A;  2P4P A;  2QPM A;  3W8X A;  3HRD C;  1W1O A;  1N5X A;  2W54 A;  4BC7 A;  2R8D A;  3NS1 B;  1SB3 B;  2Y08 A;  2VFT A;  3POP A;  3ETR B;  1W1M A;  3S1D A;  5FXP A;  1ZXI C;  5ADZ A;  1MBB A;  5K8E A;  1W1Q A;  4BCA A;  2GQU A;  2NQW A;  1WVE A;  5D79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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