3S1DA

Glu381ser mutant of maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 170
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1dA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1dA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1dA03
3W8XA 1VAOA 1I19A 1DIQA 1VDVA 3NVZB 4DNSA 3DEDA 1JRPA 5FXEA 5FXPA 1N5XA 3ETRB 3TSJA 2W55A 3W8WA 1SB3B 2PLSA 5ADZA 5D79A 3NVYB 4PWBA 1N63C 5G5HB 2BVFA 3NVWB 1W1RA 5AE3A 4PVKA 1N60C 1WYGA 4PVJA 1FFVC 1ZXIC 2W3RA 1W1MA 2VFTA 3KJMA 3NS1B 1DZNA 2VAOA 2VFVA 3TSHA 4JAYA 4PYTA 4BC7A 5AE1A 3AM9A 1E8GA 3VTEA 1QLTA 2VFUA 2O3GA 3C0PA 1W1SA 2OAIA 1E8FA 3D2JA 3FWAA 3W8ZA 2BVGA 3S1EA 2YVSA 3LAEA 1JROA 3PM9A 1T3QC 3I99A 4JB1A 3GSYA 1FO4A 2W3SA 2E3TA 5FXFA 4BBYA 2MBRA 2BVHA 2I0KA 1E0YA 2QKNA 3HRDC 1AHVA 2EXRA 5G5GB 2P3HA 1UXYA 3FW9A 4PVEA 2GQUA 3TX1A 3FW7A 4PWCA 2R2ZA 1MBBA 4BC9A 2GQTA 1N62C 3D2HA 3BW7A 1N61C 1WVEA 3NRZB 4ML8A 1HSKA 2PLIA 3NVVB 3AMZA 4PVHA 1E8HA 1N5WC 2R8DA 3S1FA 4PZFA 2RK5A 1W1OA 3AN1A 2AXRA 4XLOA 2P13A 1FIQB 1QLUA 4UD8A 4BCAA 2VFSA 4ZOHB 5HHZA 3B9JB 4HG0A 1W1LA 3SR6B 2VFRA 3FW8A 4EC3A 1ZR6A 2QPMA 1DIIA 1W1KA 2P4PA 3EUB3 1MBTA 5HQXA 3S1DA 3DQ0A 5AE2A 3S1CA 2NQWA 2Q85A 4OALA 5FXDA 3D2DA 1WVFA 1FFUC 3LLBA 2Q4WA 2W54A 1W1QA 5HMRA 4O95A 1V97A 3JS8A 1F0XA 1AHZA 1AHUA 1W1JA 1RM6B 4MLAA
chains in the Genus database with same CATH superfamily
3W8XA 1VAOA 1I19A 3EJDB 1DIQA 1VDVA 3NVZB 4DNSA 3RJAA 3DEDA 1JRPA 5FXEA 5FXPA 1N5XA 3ETRB 3TSJA 2W55A 3W8WA 1SB3B 2PLSA 5ADZA 2Y4GA 5D79A 3NVYB 4PWBA 1N63C 5G5HB 2BVFA 3NVWB 1W1RA 5AE3A 4PVKA 1N60C 1WYGA 4PVJA 1FFVC 1ZXIC 2W3RA 1W1MA 2VFTA 3KJMA 3NS1B 1DZNA 2VAOA 2Y3SA 2VFVA 3TSHA 4JAYA 4PYTA 4BC7A 5AE1A 3AM9A 1E8GA 3VTEA 2Y08A 1QLTA 2VFUA 2UUUA 2O3GA 3C0PA 5L6GA 1W1SA 2OAIA 1E8FA 3D2JA 5I1VA 3FWAA 3W8ZA 2BVGA 5AWVA 3S1EA 2YVSA 3LAEA 1JROA 3PM9A 1T3QC 3I99A 4JB1A 3RJ8A 3GSYA 1FO4A 2W3SA 2E3TA 5FXFA 4BBYA 2Y3RA 2MBRA 2BVHA 3PQBA 2I0KA 3HSUA 1E0YA 2QKNA 3HRDC 1AHVA 2EXRA 5G5GB 3POPA 2P3HA 1UXYA 3FW9A 4PVEA 2GQUA 2WDWA 3TX1A 3FW7A 5L6FA 4PWCA 2R2ZA 1MBBA 4BC9A 2GQTA 5I1WA 1N62C 3D2HA 3BW7A 1N61C 1WVEA 3NRZB 3NVVB 1HSKA 4ML8A 2PLIA 3AMZA 3EJBB 4PVHA 1E8HA 1N5WC 2UUVA 2R8DA 3S1FA 4PZFA 2RK5A 1W1OA 3AN1A 2AXRA 4XLOA 2P13A 1FIQB 1QLUA 4UD8A 4BCAA 2VFSA 4ZOHB 5HHZA 3B9JB 4HG0A 5K8EA 1W1LA 3SR6B 2VFRA 3FW8A 4EC3A 1ZR6A 2QPMA 1DIIA 1W1KA 2P4PA 3EUB3 2IPIA 1MBTA 5HQXA 3S1DA 3DQ0A 5AE2A 3S1CA 2NQWA 2Q85A 4OALA 5FXDA 3D2DA 1WVFA 1FFUC 3LLBA 2Q4WA 2W54A 1W1QA 5HMRA 4O95A 3EJEB 1V97A 3JS8A 1F0XA 1AHZA 1AHUA 1W1JA 1RM6B 4MLAA
chains in the Genus database with same CATH topology
3W8XA 1VAOA 1I19A 1DIQA 1VDVA 3NVZB 4DNSA 3RJAA 3DEDA 1JRPA 5FXEA 5FXPA 1N5XA 3ETRB 3TSJA 2W55A 3W8WA 1SB3B 2PLSA 5ADZA 2Y4GA 5D79A 3NVYB 4PWBA 1N63C 5G5HB 2BVFA 3NVWB 1W1RA 5AE3A 4PVKA 1N60C 1WYGA 4PVJA 1FFVC 1ZXIC 2W3RA 1W1MA 2VFTA 3KJMA 3NS1B 1DZNA 2VAOA 2Y3SA 2VFVA 3TSHA 4JAYA 4PYTA 4BC7A 5AE1A 3AM9A 1E8GA 3VTEA 2Y08A 1QLTA 2VFUA 2UUUA 2O3GA 3C0PA 5L6GA 1W1SA 2OAIA 1E8FA 3D2JA 5I1VA 3FWAA 3W8ZA 2BVGA 5AWVA 3S1EA 2YVSA 3LAEA 1JROA 3PM9A 1T3QC 3I99A 4JB1A 3RJ8A 3GSYA 1FO4A 2W3SA 2E3TA 5FXFA 4BBYA 2Y3RA 2MBRA 2BVHA 3PQBA 2I0KA 3HSUA 1E0YA 2QKNA 3HRDC 1AHVA 2EXRA 5G5GB 3POPA 2P3HA 1UXYA 3FW9A 4PVEA 2GQUA 2WDWA 3TX1A 3FW7A 5L6FA 4PWCA 2R2ZA 1MBBA 4BC9A 2GQTA 5I1WA 1N62C 3D2HA 3BW7A 1N61C 1WVEA 3NRZB 4ML8A 1HSKA 2PLIA 3NVVB 3AMZA 4PVHA 1E8HA 1N5WC 2UUVA 2R8DA 3S1FA 4PZFA 2RK5A 1W1OA 3AN1A 2AXRA 4XLOA 2P13A 1FIQB 1QLUA 4UD8A 4BCAA 2VFSA 4ZOHB 5HHZA 3B9JB 4HG0A 5K8EA 1W1LA 3SR6B 2VFRA 3FW8A 4EC3A 1ZR6A 2QPMA 1DIIA 1W1KA 2P4PA 3EUB3 2IPIA 1MBTA 5HQXA 3S1DA 3DQ0A 5AE2A 3S1CA 2NQWA 2Q85A 4OALA 5FXDA 3D2DA 1WVFA 1FFUC 3LLBA 2Q4WA 2W54A 1W1QA 5HMRA 4O95A 1V97A 3JS8A 1F0XA 1AHZA 1AHUA 1W1JA 1RM6B 4MLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8X A;  1VAO A;  1I19 A;  1DIQ A;  1VDV A;  3NVZ B;  4DNS A;  3DED A;  1JRP A;  5FXE A;  5FXP A;  1N5X A;  3ETR B;  3TSJ A;  2W55 A;  3W8W A;  1SB3 B;  2PLS A;  5ADZ A;  5D79 A;  3NVY B;  4PWB A;  1N63 C;  5G5H B;  2BVF A;  3NVW B;  1W1R A;  5AE3 A;  4PVK A;  1N60 C;  1WYG A;  4PVJ A;  1FFV C;  1ZXI C;  2W3R A;  1W1M A;  2VFT A;  3KJM A;  3NS1 B;  1DZN A;  2VAO A;  2VFV A;  3TSH A;  4JAY A;  4PYT A;  4BC7 A;  5AE1 A;  3AM9 A;  1E8G A;  3VTE A;  1QLT A;  2VFU A;  2O3G A;  3C0P A;  1W1S A;  2OAI A;  1E8F A;  3D2J A;  3FWA A;  3W8Z A;  2BVG A;  3S1E A;  2YVS A;  3LAE A;  1JRO A;  3PM9 A;  1T3Q C;  3I99 A;  4JB1 A;  3GSY A;  1FO4 A;  2W3S A;  2E3T A;  5FXF A;  4BBY A;  2MBR A;  2BVH A;  2I0K A;  1E0Y A;  2QKN A;  3HRD C;  1AHV A;  2EXR A;  5G5G B;  2P3H A;  1UXY A;  3FW9 A;  4PVE A;  2GQU A;  3TX1 A;  3FW7 A;  4PWC A;  2R2Z A;  1MBB A;  4BC9 A;  2GQT A;  1N62 C;  3D2H A;  3BW7 A;  1N61 C;  1WVE A;  3NRZ B;  4ML8 A;  1HSK A;  2PLI A;  3NVV B;  3AMZ A;  4PVH A;  1E8H A;  1N5W C;  2R8D A;  3S1F A;  4PZF A;  2RK5 A;  1W1O A;  3AN1 A;  2AXR A;  4XLO A;  2P13 A;  1FIQ B;  1QLU A;  4UD8 A;  4BCA A;  2VFS A;  4ZOH B;  5HHZ A;  3B9J B;  4HG0 A;  1W1L A;  3SR6 B;  2VFR A;  3FW8 A;  4EC3 A;  1ZR6 A;  2QPM A;  1DII A;  1W1K A;  2P4P A;  3EUB 3;  1MBT A;  5HQX A;  3S1D A;  3DQ0 A;  5AE2 A;  3S1C A;  2NQW A;  2Q85 A;  4OAL A;  5FXD A;  3D2D A;  1WVF A;  1FFU C;  3LLB A;  2Q4W A;  2W54 A;  1W1Q A;  5HMR A;  4O95 A;  1V97 A;  3JS8 A;  1F0X A;  1AHZ A;  1AHU A;  1W1J A;  1RM6 B;  4MLA A; 
#chains in the Genus database with same CATH topology
 3W8X A;  1VAO A;  1I19 A;  3EJD B;  1DIQ A;  1VDV A;  3NVZ B;  4DNS A;  3RJA A;  3DED A;  1JRP A;  5FXE A;  5FXP A;  1N5X A;  3ETR B;  3TSJ A;  2W55 A;  3W8W A;  1SB3 B;  2PLS A;  5ADZ A;  2Y4G A;  5D79 A;  3NVY B;  4PWB A;  1N63 C;  5G5H B;  2BVF A;  3NVW B;  1W1R A;  5AE3 A;  4PVK A;  1N60 C;  1WYG A;  4PVJ A;  1FFV C;  1ZXI C;  2W3R A;  1W1M A;  2VFT A;  3KJM A;  3NS1 B;  1DZN A;  2VAO A;  2Y3S A;  2VFV A;  3TSH A;  4JAY A;  4PYT A;  4BC7 A;  5AE1 A;  3AM9 A;  1E8G A;  3VTE A;  2Y08 A;  1QLT A;  2VFU A;  2UUU A;  2O3G A;  3C0P A;  5L6G A;  1W1S A;  2OAI A;  1E8F A;  3D2J A;  5I1V A;  3FWA A;  3W8Z A;  2BVG A;  5AWV A;  3S1E A;  2YVS A;  3LAE A;  1JRO A;  3PM9 A;  1T3Q C;  3I99 A;  4JB1 A;  3RJ8 A;  3GSY A;  1FO4 A;  2W3S A;  2E3T A;  5FXF A;  4BBY A;  2Y3R A;  2MBR A;  2BVH A;  3PQB A;  2I0K A;  3HSU A;  1E0Y A;  2QKN A;  3HRD C;  1AHV A;  2EXR A;  5G5G B;  3POP A;  2P3H A;  1UXY A;  3FW9 A;  4PVE A;  2GQU A;  2WDW A;  3TX1 A;  3FW7 A;  5L6F A;  4PWC A;  2R2Z A;  1MBB A;  4BC9 A;  2GQT A;  5I1W A;  1N62 C;  3D2H A;  3BW7 A;  1N61 C;  1WVE A;  3NRZ B;  3NVV B;  1HSK A;  4ML8 A;  2PLI A;  3AMZ A;  3EJB B;  4PVH A;  1E8H A;  1N5W C;  2UUV A;  2R8D A;  3S1F A;  4PZF A;  2RK5 A;  1W1O A;  3AN1 A;  2AXR A;  4XLO A;  2P13 A;  1FIQ B;  1QLU A;  4UD8 A;  4BCA A;  2VFS A;  4ZOH B;  5HHZ A;  3B9J B;  4HG0 A;  5K8E A;  1W1L A;  3SR6 B;  2VFR A;  3FW8 A;  4EC3 A;  1ZR6 A;  2QPM A;  1DII A;  1W1K A;  2P4P A;  3EUB 3;  2IPI A;  1MBT A;  5HQX A;  3S1D A;  3DQ0 A;  5AE2 A;  3S1C A;  2NQW A;  2Q85 A;  4OAL A;  5FXD A;  3D2D A;  1WVF A;  1FFU C;  3LLB A;  2Q4W A;  2W54 A;  1W1Q A;  5HMR A;  4O95 A;  3EJE B;  1V97 A;  3JS8 A;  1F0X A;  1AHZ A;  1AHU A;  1W1J A;  1RM6 B;  4MLA A; 
#chains in the Genus database with same CATH homology
 3W8X A;  1VAO A;  1I19 A;  1DIQ A;  1VDV A;  3NVZ B;  4DNS A;  3RJA A;  3DED A;  1JRP A;  5FXE A;  5FXP A;  1N5X A;  3ETR B;  3TSJ A;  2W55 A;  3W8W A;  1SB3 B;  2PLS A;  5ADZ A;  2Y4G A;  5D79 A;  3NVY B;  4PWB A;  1N63 C;  5G5H B;  2BVF A;  3NVW B;  1W1R A;  5AE3 A;  4PVK A;  1N60 C;  1WYG A;  4PVJ A;  1FFV C;  1ZXI C;  2W3R A;  1W1M A;  2VFT A;  3KJM A;  3NS1 B;  1DZN A;  2VAO A;  2Y3S A;  2VFV A;  3TSH A;  4JAY A;  4PYT A;  4BC7 A;  5AE1 A;  3AM9 A;  1E8G A;  3VTE A;  2Y08 A;  1QLT A;  2VFU A;  2UUU A;  2O3G A;  3C0P A;  5L6G A;  1W1S A;  2OAI A;  1E8F A;  3D2J A;  5I1V A;  3FWA A;  3W8Z A;  2BVG A;  5AWV A;  3S1E A;  2YVS A;  3LAE A;  1JRO A;  3PM9 A;  1T3Q C;  3I99 A;  4JB1 A;  3RJ8 A;  3GSY A;  1FO4 A;  2W3S A;  2E3T A;  5FXF A;  4BBY A;  2Y3R A;  2MBR A;  2BVH A;  3PQB A;  2I0K A;  3HSU A;  1E0Y A;  2QKN A;  3HRD C;  1AHV A;  2EXR A;  5G5G B;  3POP A;  2P3H A;  1UXY A;  3FW9 A;  4PVE A;  2GQU A;  2WDW A;  3TX1 A;  3FW7 A;  5L6F A;  4PWC A;  2R2Z A;  1MBB A;  4BC9 A;  2GQT A;  5I1W A;  1N62 C;  3D2H A;  3BW7 A;  1N61 C;  1WVE A;  3NRZ B;  4ML8 A;  1HSK A;  2PLI A;  3NVV B;  3AMZ A;  4PVH A;  1E8H A;  1N5W C;  2UUV A;  2R8D A;  3S1F A;  4PZF A;  2RK5 A;  1W1O A;  3AN1 A;  2AXR A;  4XLO A;  2P13 A;  1FIQ B;  1QLU A;  4UD8 A;  4BCA A;  2VFS A;  4ZOH B;  5HHZ A;  3B9J B;  4HG0 A;  5K8E A;  1W1L A;  3SR6 B;  2VFR A;  3FW8 A;  4EC3 A;  1ZR6 A;  2QPM A;  1DII A;  1W1K A;  2P4P A;  3EUB 3;  2IPI A;  1MBT A;  5HQX A;  3S1D A;  3DQ0 A;  5AE2 A;  3S1C A;  2NQW A;  2Q85 A;  4OAL A;  5FXD A;  3D2D A;  1WVF A;  1FFU C;  3LLB A;  2Q4W A;  2W54 A;  1W1Q A;  5HMR A;  4O95 A;  1V97 A;  3JS8 A;  1F0X A;  1AHZ A;  1AHU A;  1W1J A;  1RM6 B;  4MLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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