3S1DA

Glu381ser mutant of maize cytokinin oxidase/dehydrogenase complexed with n6-isopentenyladenosine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
502
structure length
498
Chain Sequence
PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Cytokinin dehydrogenase 1
publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
total genus 170
structure length 498
sequence length 502
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2011-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3s1dA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3s1dA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3s1dA03
5HHZA 4JAYA 1JRPA 2W55A 2AXRA 3GSYA 1WVFA 5AE1A 3FWAA 3AM9A 3KJMA 3I99A 3AN1A 2EXRA 3W8ZA 5HMRA 1W1RA 3LLBA 4ZOHB 1DIIA 3FW9A 2R2ZA 2R8DA 5FXPA 3DEDA 2BVHA 2P4PA 3NVWB 1QLUA 2GQTA 2GQUA 1AHZA 1FFUC 3NRZB 4BC7A 2YVSA 2QKNA 1JROA 3S1FA 3TSHA 2W54A 5FXFA 1WVEA 1VAOA 3FW7A 4BBYA 2VFRA 3TX1A 4PWCA 3NVVB 1DZNA 1UXYA 5D79A 2W3RA 3BW7A 2NQWA 3PM9A 3D2HA 3NVZB 1W1LA 1W1QA 2PLIA 1RM6B 1AHVA 2RK5A 1N61C 1W1MA 3W8XA 3TSJA 2Q85A 4O95A 1FFVC 2I0KA 3SR6B 5HQXA 4PYTA 3C0PA 1F0XA 4ML8A 2O3GA 3W8WA 3LAEA 2BVGA 5AE2A 1FO4A 4PWBA 4EC3A 1E8GA 1I19A 1AHUA 2W3SA 1N5XA 1ZR6A 3NVYB 3ETRB 1N62C 3D2JA 4PVKA 1HSKA 2MBRA 1VDVA 1N60C 3S1CA 1WYGA 4UD8A 5ADZA 3D2DA 4JB1A 4PZFA 1W1OA 1ZXIC 2VFTA 1E8HA 2P13A 2QPMA 2E3TA 1FIQB 4BC9A 5G5HB 2Q4WA 4OALA 1DIQA 1E0YA 1SB3B 1V97A 3DQ0A 2VFSA 4PVJA 3EUB3 1E8FA 1N63C 2P3HA 1MBBA 5FXDA 3JS8A 2PLSA 1W1JA 5AE3A 1T3QC 3NS1B 4PVHA 4MLAA 1W1SA 4XLOA 3AMZA 1W1KA 1N5WC 4DNSA 3S1EA 5FXEA 2VAOA 4BCAA 3S1DA 4PVEA 4HG0A 3VTEA 5G5GB 2BVFA 2VFUA 3FW8A 3HRDC 3B9JB 1QLTA 2OAIA 2VFVA 1MBTA
chains in the Genus database with same CATH superfamily
5HHZA 4JAYA 1JRPA 2W55A 3POPA 2AXRA 3GSYA 1WVFA 5AE1A 3PQBA 3FWAA 3AM9A 3KJMA 3I99A 3AN1A 2EXRA 3W8ZA 5HMRA 1W1RA 2Y3RA 3LLBA 5K8EA 4ZOHB 5L6GA 1DIIA 3FW9A 2R2ZA 2R8DA 5FXPA 3DEDA 2BVHA 2P4PA 3NVWB 1QLUA 2GQTA 2GQUA 1AHZA 1FFUC 3NRZB 4BC7A 2YVSA 2Y4GA 2QKNA 1JROA 3S1FA 3TSHA 2W54A 5FXFA 2UUVA 1WVEA 1VAOA 3FW7A 4BBYA 3HSUA 3RJ8A 2VFRA 5AWVA 3TX1A 3NVVB 4PWCA 1DZNA 1UXYA 2Y3SA 5I1VA 5D79A 2W3RA 3BW7A 2NQWA 3PM9A 3D2HA 3NVZB 1W1LA 1W1QA 2PLIA 1RM6B 1AHVA 2RK5A 1N61C 1W1MA 3W8XA 3TSJA 2Q85A 4O95A 1FFVC 2I0KA 3SR6B 5HQXA 4PYTA 3C0PA 1F0XA 4ML8A 2O3GA 3W8WA 3LAEA 2BVGA 5AE2A 1FO4A 4PWBA 4EC3A 1E8GA 1I19A 1AHUA 3RJAA 2W3SA 1N5XA 1ZR6A 3NVYB 5I1WA 3ETRB 1N62C 3D2JA 4PVKA 1HSKA 2MBRA 3EJEB 1VDVA 1N60C 3S1CA 1WYGA 4UD8A 5ADZA 3D2DA 4JB1A 4PZFA 1W1OA 1ZXIC 2VFTA 1E8HA 2P13A 2QPMA 2E3TA 1FIQB 4BC9A 5G5HB 2Q4WA 4OALA 2WDWA 1DIQA 1E0YA 1SB3B 1V97A 3DQ0A 2VFSA 4PVJA 2UUUA 3EUB3 3EJBB 1E8FA 1N63C 2P3HA 1MBBA 5FXDA 3JS8A 2PLSA 2Y08A 1W1JA 5AE3A 1T3QC 3NS1B 4PVHA 4MLAA 1W1SA 4XLOA 3AMZA 1W1KA 1N5WC 4DNSA 3S1EA 5FXEA 2VAOA 4BCAA 3EJDB 4PVEA 3S1DA 3VTEA 4HG0A 5G5GB 2BVFA 2IPIA 2VFUA 3FW8A 5L6FA 3HRDC 3B9JB 1QLTA 2OAIA 2VFVA 1MBTA
chains in the Genus database with same CATH topology
5HHZA 4JAYA 1JRPA 2W55A 3POPA 2AXRA 3GSYA 1WVFA 5AE1A 3PQBA 3FWAA 3AM9A 3KJMA 3I99A 3AN1A 2EXRA 3W8ZA 5HMRA 1W1RA 2Y3RA 3LLBA 5K8EA 4ZOHB 5L6GA 1DIIA 3FW9A 2R2ZA 2R8DA 5FXPA 3DEDA 2BVHA 2P4PA 3NVWB 1QLUA 2GQTA 2GQUA 1AHZA 1FFUC 3NRZB 4BC7A 2YVSA 2Y4GA 2QKNA 1JROA 3S1FA 3TSHA 2W54A 5FXFA 2UUVA 1WVEA 1VAOA 3FW7A 4BBYA 3HSUA 3RJ8A 2VFRA 5AWVA 3TX1A 4PWCA 3NVVB 1DZNA 1UXYA 2Y3SA 5I1VA 5D79A 2W3RA 3BW7A 2NQWA 3PM9A 3D2HA 3NVZB 1W1LA 1W1QA 2PLIA 1RM6B 1AHVA 2RK5A 1N61C 1W1MA 3W8XA 3TSJA 2Q85A 4O95A 1FFVC 2I0KA 3SR6B 5HQXA 4PYTA 3C0PA 1F0XA 4ML8A 2O3GA 3W8WA 3LAEA 2BVGA 5AE2A 1FO4A 4PWBA 4EC3A 1E8GA 1I19A 1AHUA 3RJAA 2W3SA 1N5XA 1ZR6A 3NVYB 5I1WA 3ETRB 1N62C 3D2JA 4PVKA 1HSKA 2MBRA 1VDVA 1N60C 3S1CA 1WYGA 4UD8A 5ADZA 3D2DA 4JB1A 4PZFA 1W1OA 1ZXIC 2VFTA 1E8HA 2P13A 2QPMA 2E3TA 1FIQB 4BC9A 5G5HB 2Q4WA 4OALA 2WDWA 1DIQA 1E0YA 1SB3B 1V97A 3DQ0A 2VFSA 4PVJA 2UUUA 3EUB3 1E8FA 1N63C 2P3HA 1MBBA 5FXDA 3JS8A 2PLSA 2Y08A 1W1JA 5AE3A 1T3QC 3NS1B 4PVHA 4MLAA 1W1SA 4XLOA 3AMZA 1W1KA 1N5WC 4DNSA 3S1EA 5FXEA 2VAOA 4BCAA 3S1DA 4PVEA 4HG0A 3VTEA 5G5GB 2BVFA 2IPIA 2VFUA 3FW8A 5L6FA 3HRDC 3B9JB 1QLTA 2OAIA 2VFVA 1MBTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HHZ A;  4JAY A;  1JRP A;  2W55 A;  2AXR A;  3GSY A;  1WVF A;  5AE1 A;  3FWA A;  3AM9 A;  3KJM A;  3I99 A;  3AN1 A;  2EXR A;  3W8Z A;  5HMR A;  1W1R A;  3LLB A;  4ZOH B;  1DII A;  3FW9 A;  2R2Z A;  2R8D A;  5FXP A;  3DED A;  2BVH A;  2P4P A;  3NVW B;  1QLU A;  2GQT A;  2GQU A;  1AHZ A;  1FFU C;  3NRZ B;  4BC7 A;  2YVS A;  2QKN A;  1JRO A;  3S1F A;  3TSH A;  2W54 A;  5FXF A;  1WVE A;  1VAO A;  3FW7 A;  4BBY A;  2VFR A;  3TX1 A;  4PWC A;  3NVV B;  1DZN A;  1UXY A;  5D79 A;  2W3R A;  3BW7 A;  2NQW A;  3PM9 A;  3D2H A;  3NVZ B;  1W1L A;  1W1Q A;  2PLI A;  1RM6 B;  1AHV A;  2RK5 A;  1N61 C;  1W1M A;  3W8X A;  3TSJ A;  2Q85 A;  4O95 A;  1FFV C;  2I0K A;  3SR6 B;  5HQX A;  4PYT A;  3C0P A;  1F0X A;  4ML8 A;  2O3G A;  3W8W A;  3LAE A;  2BVG A;  5AE2 A;  1FO4 A;  4PWB A;  4EC3 A;  1E8G A;  1I19 A;  1AHU A;  2W3S A;  1N5X A;  1ZR6 A;  3NVY B;  3ETR B;  1N62 C;  3D2J A;  4PVK A;  1HSK A;  2MBR A;  1VDV A;  1N60 C;  3S1C A;  1WYG A;  4UD8 A;  5ADZ A;  3D2D A;  4JB1 A;  4PZF A;  1W1O A;  1ZXI C;  2VFT A;  1E8H A;  2P13 A;  2QPM A;  2E3T A;  1FIQ B;  4BC9 A;  5G5H B;  2Q4W A;  4OAL A;  1DIQ A;  1E0Y A;  1SB3 B;  1V97 A;  3DQ0 A;  2VFS A;  4PVJ A;  3EUB 3;  1E8F A;  1N63 C;  2P3H A;  1MBB A;  5FXD A;  3JS8 A;  2PLS A;  1W1J A;  5AE3 A;  1T3Q C;  3NS1 B;  4PVH A;  4MLA A;  1W1S A;  4XLO A;  3AMZ A;  1W1K A;  1N5W C;  4DNS A;  3S1E A;  5FXE A;  2VAO A;  4BCA A;  3S1D A;  4PVE A;  4HG0 A;  3VTE A;  5G5G B;  2BVF A;  2VFU A;  3FW8 A;  3HRD C;  3B9J B;  1QLT A;  2OAI A;  2VFV A;  1MBT A; 
#chains in the Genus database with same CATH topology
 5HHZ A;  4JAY A;  1JRP A;  2W55 A;  3POP A;  2AXR A;  3GSY A;  1WVF A;  5AE1 A;  3PQB A;  3FWA A;  3AM9 A;  3KJM A;  3I99 A;  3AN1 A;  2EXR A;  3W8Z A;  5HMR A;  1W1R A;  2Y3R A;  3LLB A;  5K8E A;  4ZOH B;  5L6G A;  1DII A;  3FW9 A;  2R2Z A;  2R8D A;  5FXP A;  3DED A;  2BVH A;  2P4P A;  3NVW B;  1QLU A;  2GQT A;  2GQU A;  1AHZ A;  1FFU C;  3NRZ B;  4BC7 A;  2YVS A;  2Y4G A;  2QKN A;  1JRO A;  3S1F A;  3TSH A;  2W54 A;  5FXF A;  2UUV A;  1WVE A;  1VAO A;  3FW7 A;  4BBY A;  3HSU A;  3RJ8 A;  2VFR A;  5AWV A;  3TX1 A;  3NVV B;  4PWC A;  1DZN A;  1UXY A;  2Y3S A;  5I1V A;  5D79 A;  2W3R A;  3BW7 A;  2NQW A;  3PM9 A;  3D2H A;  3NVZ B;  1W1L A;  1W1Q A;  2PLI A;  1RM6 B;  1AHV A;  2RK5 A;  1N61 C;  1W1M A;  3W8X A;  3TSJ A;  2Q85 A;  4O95 A;  1FFV C;  2I0K A;  3SR6 B;  5HQX A;  4PYT A;  3C0P A;  1F0X A;  4ML8 A;  2O3G A;  3W8W A;  3LAE A;  2BVG A;  5AE2 A;  1FO4 A;  4PWB A;  4EC3 A;  1E8G A;  1I19 A;  1AHU A;  3RJA A;  2W3S A;  1N5X A;  1ZR6 A;  3NVY B;  5I1W A;  3ETR B;  1N62 C;  3D2J A;  4PVK A;  1HSK A;  2MBR A;  3EJE B;  1VDV A;  1N60 C;  3S1C A;  1WYG A;  4UD8 A;  5ADZ A;  3D2D A;  4JB1 A;  4PZF A;  1W1O A;  1ZXI C;  2VFT A;  1E8H A;  2P13 A;  2QPM A;  2E3T A;  1FIQ B;  4BC9 A;  5G5H B;  2Q4W A;  4OAL A;  2WDW A;  1DIQ A;  1E0Y A;  1SB3 B;  1V97 A;  3DQ0 A;  2VFS A;  4PVJ A;  2UUU A;  3EUB 3;  3EJB B;  1E8F A;  1N63 C;  2P3H A;  1MBB A;  5FXD A;  3JS8 A;  2PLS A;  2Y08 A;  1W1J A;  5AE3 A;  1T3Q C;  3NS1 B;  4PVH A;  4MLA A;  1W1S A;  4XLO A;  3AMZ A;  1W1K A;  1N5W C;  4DNS A;  3S1E A;  5FXE A;  2VAO A;  4BCA A;  3EJD B;  4PVE A;  3S1D A;  3VTE A;  4HG0 A;  5G5G B;  2BVF A;  2IPI A;  2VFU A;  3FW8 A;  5L6F A;  3HRD C;  3B9J B;  1QLT A;  2OAI A;  2VFV A;  1MBT A; 
#chains in the Genus database with same CATH homology
 5HHZ A;  4JAY A;  1JRP A;  2W55 A;  3POP A;  2AXR A;  3GSY A;  1WVF A;  5AE1 A;  3PQB A;  3FWA A;  3AM9 A;  3KJM A;  3I99 A;  3AN1 A;  2EXR A;  3W8Z A;  5HMR A;  1W1R A;  2Y3R A;  3LLB A;  5K8E A;  4ZOH B;  5L6G A;  1DII A;  3FW9 A;  2R2Z A;  2R8D A;  5FXP A;  3DED A;  2BVH A;  2P4P A;  3NVW B;  1QLU A;  2GQT A;  2GQU A;  1AHZ A;  1FFU C;  3NRZ B;  4BC7 A;  2YVS A;  2Y4G A;  2QKN A;  1JRO A;  3S1F A;  3TSH A;  2W54 A;  5FXF A;  2UUV A;  1WVE A;  1VAO A;  3FW7 A;  4BBY A;  3HSU A;  3RJ8 A;  2VFR A;  5AWV A;  3TX1 A;  4PWC A;  3NVV B;  1DZN A;  1UXY A;  2Y3S A;  5I1V A;  5D79 A;  2W3R A;  3BW7 A;  2NQW A;  3PM9 A;  3D2H A;  3NVZ B;  1W1L A;  1W1Q A;  2PLI A;  1RM6 B;  1AHV A;  2RK5 A;  1N61 C;  1W1M A;  3W8X A;  3TSJ A;  2Q85 A;  4O95 A;  1FFV C;  2I0K A;  3SR6 B;  5HQX A;  4PYT A;  3C0P A;  1F0X A;  4ML8 A;  2O3G A;  3W8W A;  3LAE A;  2BVG A;  5AE2 A;  1FO4 A;  4PWB A;  4EC3 A;  1E8G A;  1I19 A;  1AHU A;  3RJA A;  2W3S A;  1N5X A;  1ZR6 A;  3NVY B;  5I1W A;  3ETR B;  1N62 C;  3D2J A;  4PVK A;  1HSK A;  2MBR A;  1VDV A;  1N60 C;  3S1C A;  1WYG A;  4UD8 A;  5ADZ A;  3D2D A;  4JB1 A;  4PZF A;  1W1O A;  1ZXI C;  2VFT A;  1E8H A;  2P13 A;  2QPM A;  2E3T A;  1FIQ B;  4BC9 A;  5G5H B;  2Q4W A;  4OAL A;  2WDW A;  1DIQ A;  1E0Y A;  1SB3 B;  1V97 A;  3DQ0 A;  2VFS A;  4PVJ A;  2UUU A;  3EUB 3;  1E8F A;  1N63 C;  2P3H A;  1MBB A;  5FXD A;  3JS8 A;  2PLS A;  2Y08 A;  1W1J A;  5AE3 A;  1T3Q C;  3NS1 B;  4PVH A;  4MLA A;  1W1S A;  4XLO A;  3AMZ A;  1W1K A;  1N5W C;  4DNS A;  3S1E A;  5FXE A;  2VAO A;  4BCA A;  3S1D A;  4PVE A;  4HG0 A;  3VTE A;  5G5G B;  2BVF A;  2IPI A;  2VFU A;  3FW8 A;  5L6F A;  3HRD C;  3B9J B;  1QLT A;  2OAI A;  2VFV A;  1MBT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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