The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
87
|
structure length |
87
|
Chain Sequence |
LPFKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDKRRIIEIKIFPFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
CBS domain protein
|
| publication title |
Structure of the transporter associated domain from PG_0272, a CBS domain protein from Porphyromonas gingivalis.
rcsb |
| source organism |
Porphyromonas gingivalis
|
| total genus |
20
|
| structure length |
87
|
| sequence length |
87
|
| ec nomenclature | |
| pdb deposition date | 2006-10-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03471 | CorC_HlyC | Transporter associated domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 |
#chains in the Genus database with same CATH superfamily 1W1M A; 5G5G B; 1T3Q C; 4BBY A; 3W8X A; 2BVG A; 3W8W A; 2P3H A; 2PLS A; 1FFU C; 5FXE A; 2W54 A; 4OAL A; 2W3S A; 3NVZ B; 4ZOH B; 1W1K A; 1N5W C; 1N61 C; 3AN1 A; 3NVV B; 2OAI A; 3W8Z A; 2NQW A; 3ETR B; 1N63 C; 4BC9 A; 1WVE A; 5FXD A; 2VFT A; 1W1Q A; 2R8D A; 5G5H B; 1HSK A; 3NVW B; 3I99 A; 1VAO A; 4O95 A; 3KJM A; 2R2Z A; 3NVY B; 2VFS A; 1N5X A; 4MLA A; 3AMZ A; 1DIQ A; 3EUB 3; 5AE1 A; 1I19 A; 1N62 C; 1W1L A; 5FXF A; 4BCA A; 1DII A; 1MBB A; 1E8G A; 1W1S A; 2PLI A; 1VDV A; 3SR6 B; 3NRZ B; 3S1F A; 2O3G A; 2Q85 A; 3B9J B; 1E8F A; 3DQ0 A; 1MBT A; 2EXR A; 5ADZ A; 5FXP A; 5HQX A; 5HMR A; 3DED A; 1F0X A; 2VAO A; 2MBR A; 1W1R A; 2VFU A; 1SB3 B; 3TX1 A; 5AE2 A; 3C0P A; 3LAE A; 3NS1 B; 1W1J A; 3AM9 A; 1E0Y A; 2BVH A; 2QKN A; 5AE3 A; 4JAY A; 1E8H A; 2VFR A; 4ML8 A; 3JS8 A; 2Q4W A; 1RM6 B; 3BW7 A; 1QLU A; 4HG0 A; 5HHZ A; 2GQU A; 3PM9 A; 4BC7 A; 2W55 A; 1AHZ A; 2P13 A; 1AHV A; 1QLT A; 1N60 C; 1DZN A; 1WVF A; 1W1O A; 2W3R A; 3LLB A; 2BVF A; 2I0K A; 3S1D A; 3S1E A; 4XLO A; 2VFV A; 4PYT A; 2AXR A; 2P4P A; 1FFV C; 1AHU A; 1JRP A; 3HRD C; 3S1C A; 2YVS A; 2RK5 A; 1UXY A; 1V97 A; 1ZXI C; 1WYG A; 2GQT A; 1FO4 A; 1JRO A; 4JB1 A; 1ZR6 A; 2QPM A; 1FIQ B; 2E3T A; #chains in the Genus database with same CATH topology 1W1M A; 5G5G B; 1T3Q C; 3RJ8 A; 4BBY A; 3W8X A; 2BVG A; 3W8W A; 2P3H A; 2PLS A; 1FFU C; 4PVE A; 5FXE A; 2W54 A; 4OAL A; 2W3S A; 3NVZ B; 2UUU A; 4ZOH B; 1W1K A; 4PVK A; 1N5W C; 1N61 C; 3AN1 A; 3NVV B; 2OAI A; 3W8Z A; 2NQW A; 3ETR B; 1N63 C; 2UUV A; 4BC9 A; 3RJA A; 1WVE A; 5FXD A; 2VFT A; 1W1Q A; 3GSY A; 2R8D A; 5G5H B; 1HSK A; 3NVW B; 3D2D A; 3I99 A; 1VAO A; 4O95 A; 3PQB A; 3KJM A; 2R2Z A; 3NVY B; 3TSJ A; 2VFS A; 1N5X A; 4DNS A; 4MLA A; 3AMZ A; 1DIQ A; 3EUB 3; 4PWC A; 3POP A; 5AE1 A; 1I19 A; 1N62 C; 1W1L A; 5FXF A; 4BCA A; 3FW8 A; 2WDW A; 1DII A; 4PWB A; 4PVJ A; 1MBB A; 1E8G A; 1W1S A; 2PLI A; 3VTE A; 1VDV A; 3SR6 B; 3TSH A; 3NRZ B; 3S1F A; 2O3G A; 2Q85 A; 3B9J B; 1E8F A; 3DQ0 A; 1MBT A; 5I1W A; 2EXR A; 5ADZ A; 5FXP A; 5HQX A; 5HMR A; 3DED A; 5L6G A; 2Y3R A; 1F0X A; 2VAO A; 2MBR A; 1W1R A; 2IPI A; 2VFU A; 1SB3 B; 3TX1 A; 5AE2 A; 3C0P A; 3LAE A; 2Y08 A; 3NS1 B; 1W1J A; 3AM9 A; 4PVH A; 3FW7 A; 1E0Y A; 2BVH A; 2QKN A; 5AE3 A; 4JAY A; 1E8H A; 2VFR A; 4ML8 A; 3JS8 A; 5L6F A; 2Q4W A; 5AWV A; 1RM6 B; 3BW7 A; 1QLU A; 4HG0 A; 5HHZ A; 2GQU A; 3PM9 A; 4BC7 A; 2W55 A; 1AHZ A; 2P13 A; 1AHV A; 1QLT A; 3FW9 A; 1N60 C; 1DZN A; 3FWA A; 1WVF A; 1W1O A; 2W3R A; 3LLB A; 2BVF A; 2I0K A; 3S1D A; 5I1V A; 5K8E A; 3S1E A; 4XLO A; 2VFV A; 4PYT A; 2AXR A; 2P4P A; 1FFV C; 3D2H A; 1AHU A; 1JRP A; 4EC3 A; 3HRD C; 3S1C A; 2YVS A; 2RK5 A; 2Y3S A; 1UXY A; 1V97 A; 2Y4G A; 1ZXI C; 1WYG A; 2GQT A; 1FO4 A; 4PZF A; 5D79 A; 1JRO A; 4JB1 A; 1ZR6 A; 2QPM A; 3HSU A; 1FIQ B; 4UD8 A; 3D2J A; 2E3T A; #chains in the Genus database with same CATH homology 1W1M A; 5G5G B; 1T3Q C; 3RJ8 A; 4BBY A; 3W8X A; 2BVG A; 3W8W A; 2P3H A; 2PLS A; 1FFU C; 4PVE A; 5FXE A; 2W54 A; 4OAL A; 2W3S A; 3NVZ B; 2UUU A; 4ZOH B; 1W1K A; 4PVK A; 1N5W C; 1N61 C; 3AN1 A; 3NVV B; 2OAI A; 3W8Z A; 2NQW A; 3ETR B; 1N63 C; 2UUV A; 4BC9 A; 3RJA A; 1WVE A; 5FXD A; 2VFT A; 1W1Q A; 3GSY A; 2R8D A; 5G5H B; 1HSK A; 3NVW B; 3D2D A; 3I99 A; 1VAO A; 4O95 A; 3PQB A; 3KJM A; 2R2Z A; 3NVY B; 3TSJ A; 2VFS A; 1N5X A; 4DNS A; 4MLA A; 3AMZ A; 1DIQ A; 3EUB 3; 4PWC A; 3POP A; 5AE1 A; 1I19 A; 1N62 C; 1W1L A; 5FXF A; 4BCA A; 3FW8 A; 2WDW A; 1DII A; 4PWB A; 4PVJ A; 1MBB A; 1E8G A; 1W1S A; 2PLI A; 3VTE A; 1VDV A; 3SR6 B; 3TSH A; 3NRZ B; 3S1F A; 2O3G A; 2Q85 A; 3B9J B; 1E8F A; 3DQ0 A; 1MBT A; 5I1W A; 2EXR A; 5ADZ A; 5FXP A; 5HQX A; 5HMR A; 3DED A; 5L6G A; 2Y3R A; 1F0X A; 2VAO A; 2MBR A; 1W1R A; 2IPI A; 2VFU A; 1SB3 B; 3TX1 A; 5AE2 A; 3C0P A; 3LAE A; 2Y08 A; 3NS1 B; 1W1J A; 3AM9 A; 4PVH A; 3FW7 A; 1E0Y A; 2BVH A; 2QKN A; 5AE3 A; 4JAY A; 1E8H A; 2VFR A; 4ML8 A; 3JS8 A; 5L6F A; 2Q4W A; 5AWV A; 1RM6 B; 3BW7 A; 1QLU A; 4HG0 A; 5HHZ A; 2GQU A; 3PM9 A; 4BC7 A; 2W55 A; 1AHZ A; 2P13 A; 1AHV A; 1QLT A; 3FW9 A; 1N60 C; 1DZN A; 3FWA A; 1WVF A; 1W1O A; 2W3R A; 3LLB A; 2BVF A; 2I0K A; 3S1D A; 5I1V A; 5K8E A; 3S1E A; 4XLO A; 2VFV A; 4PYT A; 2AXR A; 2P4P A; 1FFV C; 3D2H A; 1AHU A; 1JRP A; 4EC3 A; 3HRD C; 3S1C A; 2YVS A; 2RK5 A; 2Y3S A; 1UXY A; 1V97 A; 2Y4G A; 1ZXI C; 1WYG A; 2GQT A; 1FO4 A; 4PZF A; 5D79 A; 1JRO A; 4JB1 A; 1ZR6 A; 2QPM A; 3HSU A; 1FIQ B; 4UD8 A; 3D2J A; 2E3T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
