3RJ8A

Crystal structure of carbohydrate oxidase from microdochium nivale
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Carbohydrate oxidase
publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
source organism Microdochium nivale
total genus 174
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rj8A01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rj8A02
3RJ8A 2UUVA 3TSHA 3D2DA 1ZR6A 2BVFA 3W8WA 4PVEA 4PVHA 4PVKA 4PZFA 3W8XA 3HSUA 2Y3SA 2Y08A 3TSJA 3POPA 5I1VA 5L6FA 2IPIA 3FW8A 3GSYA 5I1WA 3D2HA 4PWBA 3FW9A 2BVHA 2WDWA 3FW7A 4PWCA 2Y4GA 2BVGA 5L6GA 3VTEA 2Y3RA 4DNSA 4XLOA 3W8ZA 4PVJA 5K8EA 2UUUA 5AWVA 4UD8A 3PQBA 3RJAA 3FWAA 5D79A 3D2JA 4EC3A 2AXRA
chains in the Genus database with same CATH superfamily
3RJ8A 2W3RA 1MBTA 1V97A 3TSHA 2I0KA 1ZR6A 2BVFA 4PVHA 1WVEA 4PVKA 3TX1A 3NVVB 5G5GB 3DEDA 1QLUA 1ZXIC 1W1LA 2RK5A 2W54A 5HQXA 2YVSA 2GQUA 1W1KA 2IPIA 2P3HA 5I1WA 4JB1A 3NVYB 1E8HA 3AN1A 3S1CA 3LAEA 1W1OA 4XLOA 5K8EA 2UUUA 4PYTA 4ZOHB 3PQBA 2MBRA 2VFTA 2QPMA 5FXFA 2O3GA 3FW8A 4EC3A 2UUVA 2PLIA 4BC7A 3B9JB 3DQ0A 2VFVA 1AHZA 1AHVA 4PZFA 1MBBA 2VFUA 3HSUA 1N5WC 3KJMA 5FXPA 3POPA 5HMRA 1N5XA 2VAOA 5I1VA 5L6FA 3GSYA 1HSKA 3D2HA 1UXYA 2BVHA 5FXEA 2W3SA 4JAYA 2Y4GA 3NS1B 3LLBA 5L6GA 3S1EA 2VFSA 1JROA 5HHZA 3W8ZA 1N61C 1DIQA 3BW7A 1FIQB 1JRPA 3NRZB 4UD8A 3ETRB 2VFRA 2R8DA 2NQWA 4O95A 4BC9A 1W1RA 3W8XA 4MLAA 2Y3SA 2Y08A 4BBYA 5G5HB 1DZNA 3HRDC 2PLSA 3S1FA 4HG0A 1DIIA 3FW7A 3NVWB 4OALA 1I19A 1WYGA 3S1DA 2Y3RA 5AE2A 4DNSA 1E8GA 4PVJA 3PM9A 1N63C 1FO4A 5AWVA 1E0YA 5ADZA 3RJAA 1FFUC 3NVZB 2QKNA 2GQTA 3D2JA 3AM9A 2AXRA 3SR6B 2P4PA 1VAOA 1T3QC 1W1MA 3I99A 3AMZA 3D2DA 5FXDA 3W8WA 4PVEA 2P13A 4ML8A 1W1SA 1WVFA 3EUB3 4BCAA 3TSJA 2OAIA 2Q85A 2W55A 3C0PA 1W1QA 2R2ZA 1N60C 4PWBA 5AE3A 2Q4WA 3FW9A 2E3TA 2WDWA 1FFVC 1N62C 4PWCA 2BVGA 1F0XA 3VTEA 5AE1A 1RM6B 1AHUA 1W1JA 1QLTA 2EXRA 3JS8A 1SB3B 1E8FA 3FWAA 5D79A 1VDVA
chains in the Genus database with same CATH topology
3RJ8A 2W3RA 1MBTA 1V97A 3TSHA 2I0KA 1ZR6A 2BVFA 4PVHA 1WVEA 4PVKA 3TX1A 3NVVB 5G5GB 3DEDA 1QLUA 1ZXIC 1W1LA 2RK5A 2W54A 5HQXA 2YVSA 2GQUA 1W1KA 2IPIA 2P3HA 5I1WA 4JB1A 3NVYB 1E8HA 3AN1A 3S1CA 3LAEA 1W1OA 4XLOA 5K8EA 2UUUA 4PYTA 4ZOHB 3PQBA 2MBRA 2VFTA 2QPMA 5FXFA 2O3GA 3FW8A 4EC3A 2UUVA 2PLIA 4BC7A 3B9JB 3DQ0A 2VFVA 1AHZA 1AHVA 4PZFA 1MBBA 2VFUA 3HSUA 1N5WC 3KJMA 5FXPA 3POPA 5HMRA 1N5XA 2VAOA 5I1VA 5L6FA 3GSYA 1HSKA 3D2HA 1UXYA 2BVHA 5FXEA 2W3SA 4JAYA 2Y4GA 3NS1B 3LLBA 5L6GA 3S1EA 2VFSA 1JROA 5HHZA 3W8ZA 1N61C 1DIQA 3BW7A 1FIQB 1JRPA 3NRZB 4UD8A 3ETRB 2VFRA 2R8DA 2NQWA 4O95A 4BC9A 1W1RA 3W8XA 4MLAA 2Y3SA 2Y08A 4BBYA 5G5HB 1DZNA 3HRDC 2PLSA 3S1FA 4HG0A 1DIIA 3FW7A 3NVWB 4OALA 1I19A 1WYGA 3S1DA 2Y3RA 5AE2A 4DNSA 1E8GA 4PVJA 3PM9A 1N63C 1FO4A 5AWVA 1E0YA 5ADZA 3RJAA 1FFUC 3NVZB 2QKNA 2GQTA 3D2JA 3AM9A 2AXRA 3SR6B 2P4PA 1VAOA 1T3QC 1W1MA 3I99A 3AMZA 3D2DA 5FXDA 3W8WA 4PVEA 2P13A 4ML8A 1W1SA 1WVFA 3EUB3 4BCAA 3TSJA 2OAIA 2Q85A 2W55A 3C0PA 1W1QA 2R2ZA 1N60C 4PWBA 5AE3A 2Q4WA 3FW9A 2E3TA 2WDWA 1FFVC 1N62C 4PWCA 2BVGA 1F0XA 3VTEA 5AE1A 1RM6B 1AHUA 1W1JA 1QLTA 2EXRA 3JS8A 1SB3B 1E8FA 3FWAA 5D79A 1VDVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJ8 A;  2UUV A;  3TSH A;  3D2D A;  1ZR6 A;  2BVF A;  3W8W A;  4PVE A;  4PVH A;  4PVK A;  4PZF A;  3W8X A;  3HSU A;  2Y3S A;  2Y08 A;  3TSJ A;  3POP A;  5I1V A;  5L6F A;  2IPI A;  3FW8 A;  3GSY A;  5I1W A;  3D2H A;  4PWB A;  3FW9 A;  2BVH A;  2WDW A;  3FW7 A;  4PWC A;  2Y4G A;  2BVG A;  5L6G A;  3VTE A;  2Y3R A;  4DNS A;  4XLO A;  3W8Z A;  4PVJ A;  5K8E A;  2UUU A;  5AWV A;  4UD8 A;  3PQB A;  3RJA A;  3FWA A;  5D79 A;  3D2J A;  4EC3 A;  2AXR A; 
#chains in the Genus database with same CATH topology
 3RJ8 A;  2W3R A;  1MBT A;  1V97 A;  3TSH A;  2I0K A;  1ZR6 A;  2BVF A;  4PVH A;  1WVE A;  4PVK A;  3TX1 A;  3NVV B;  5G5G B;  3DED A;  1QLU A;  1ZXI C;  1W1L A;  2RK5 A;  2W54 A;  5HQX A;  2YVS A;  2GQU A;  1W1K A;  2IPI A;  2P3H A;  5I1W A;  4JB1 A;  3NVY B;  1E8H A;  3AN1 A;  3S1C A;  3LAE A;  1W1O A;  4XLO A;  5K8E A;  2UUU A;  4PYT A;  4ZOH B;  3PQB A;  2MBR A;  2VFT A;  2QPM A;  5FXF A;  2O3G A;  3FW8 A;  4EC3 A;  2UUV A;  2PLI A;  4BC7 A;  3B9J B;  3DQ0 A;  2VFV A;  1AHZ A;  1AHV A;  4PZF A;  1MBB A;  2VFU A;  3HSU A;  1N5W C;  3KJM A;  5FXP A;  3POP A;  5HMR A;  1N5X A;  2VAO A;  5I1V A;  5L6F A;  3GSY A;  1HSK A;  3D2H A;  1UXY A;  2BVH A;  5FXE A;  2W3S A;  4JAY A;  2Y4G A;  3NS1 B;  3LLB A;  5L6G A;  3S1E A;  2VFS A;  1JRO A;  5HHZ A;  3W8Z A;  1N61 C;  1DIQ A;  3BW7 A;  1FIQ B;  1JRP A;  3NRZ B;  4UD8 A;  3ETR B;  2VFR A;  2R8D A;  2NQW A;  4O95 A;  4BC9 A;  1W1R A;  3W8X A;  4MLA A;  2Y3S A;  2Y08 A;  4BBY A;  5G5H B;  1DZN A;  3HRD C;  2PLS A;  3S1F A;  4HG0 A;  1DII A;  3FW7 A;  3NVW B;  4OAL A;  1I19 A;  1WYG A;  3S1D A;  2Y3R A;  5AE2 A;  4DNS A;  1E8G A;  4PVJ A;  3PM9 A;  1N63 C;  1FO4 A;  5AWV A;  1E0Y A;  5ADZ A;  3RJA A;  1FFU C;  3NVZ B;  2QKN A;  2GQT A;  3D2J A;  3AM9 A;  2AXR A;  3SR6 B;  2P4P A;  1VAO A;  1T3Q C;  1W1M A;  3I99 A;  3AMZ A;  3D2D A;  5FXD A;  3W8W A;  4PVE A;  2P13 A;  4ML8 A;  1W1S A;  1WVF A;  3EUB 3;  4BCA A;  3TSJ A;  2OAI A;  2Q85 A;  2W55 A;  3C0P A;  1W1Q A;  2R2Z A;  1N60 C;  4PWB A;  5AE3 A;  2Q4W A;  3FW9 A;  2E3T A;  2WDW A;  1FFV C;  1N62 C;  4PWC A;  2BVG A;  1F0X A;  3VTE A;  5AE1 A;  1RM6 B;  1AHU A;  1W1J A;  1QLT A;  2EXR A;  3JS8 A;  1SB3 B;  1E8F A;  3FWA A;  5D79 A;  1VDV A; 
#chains in the Genus database with same CATH homology
 3RJ8 A;  2W3R A;  1MBT A;  1V97 A;  3TSH A;  2I0K A;  1ZR6 A;  2BVF A;  4PVH A;  1WVE A;  4PVK A;  3TX1 A;  3NVV B;  5G5G B;  3DED A;  1QLU A;  1ZXI C;  1W1L A;  2RK5 A;  2W54 A;  5HQX A;  2YVS A;  2GQU A;  1W1K A;  2IPI A;  2P3H A;  5I1W A;  4JB1 A;  3NVY B;  1E8H A;  3AN1 A;  3S1C A;  3LAE A;  1W1O A;  4XLO A;  5K8E A;  2UUU A;  4PYT A;  4ZOH B;  3PQB A;  2MBR A;  2VFT A;  2QPM A;  5FXF A;  2O3G A;  3FW8 A;  4EC3 A;  2UUV A;  2PLI A;  4BC7 A;  3B9J B;  3DQ0 A;  2VFV A;  1AHZ A;  1AHV A;  4PZF A;  1MBB A;  2VFU A;  3HSU A;  1N5W C;  3KJM A;  5FXP A;  3POP A;  5HMR A;  1N5X A;  2VAO A;  5I1V A;  5L6F A;  3GSY A;  1HSK A;  3D2H A;  1UXY A;  2BVH A;  5FXE A;  2W3S A;  4JAY A;  2Y4G A;  3NS1 B;  3LLB A;  5L6G A;  3S1E A;  2VFS A;  1JRO A;  5HHZ A;  3W8Z A;  1N61 C;  1DIQ A;  3BW7 A;  1FIQ B;  1JRP A;  3NRZ B;  4UD8 A;  3ETR B;  2VFR A;  2R8D A;  2NQW A;  4O95 A;  4BC9 A;  1W1R A;  3W8X A;  4MLA A;  2Y3S A;  2Y08 A;  4BBY A;  5G5H B;  1DZN A;  3HRD C;  2PLS A;  3S1F A;  4HG0 A;  1DII A;  3FW7 A;  3NVW B;  4OAL A;  1I19 A;  1WYG A;  3S1D A;  2Y3R A;  5AE2 A;  4DNS A;  1E8G A;  4PVJ A;  3PM9 A;  1N63 C;  1FO4 A;  5AWV A;  1E0Y A;  5ADZ A;  3RJA A;  1FFU C;  3NVZ B;  2QKN A;  2GQT A;  3D2J A;  3AM9 A;  2AXR A;  3SR6 B;  2P4P A;  1VAO A;  1T3Q C;  1W1M A;  3I99 A;  3AMZ A;  3D2D A;  5FXD A;  3W8W A;  4PVE A;  2P13 A;  4ML8 A;  1W1S A;  1WVF A;  3EUB 3;  4BCA A;  3TSJ A;  2OAI A;  2Q85 A;  2W55 A;  3C0P A;  1W1Q A;  2R2Z A;  1N60 C;  4PWB A;  5AE3 A;  2Q4W A;  3FW9 A;  2E3T A;  2WDW A;  1FFV C;  1N62 C;  4PWC A;  2BVG A;  1F0X A;  3VTE A;  5AE1 A;  1RM6 B;  1AHU A;  1W1J A;  1QLT A;  2EXR A;  3JS8 A;  1SB3 B;  1E8F A;  3FWA A;  5D79 A;  1VDV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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