3RJ8A

Crystal structure of carbohydrate oxidase from microdochium nivale
Total Genus 174
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carbohydrate oxidase
publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
source organism Microdochium nivale
molecule tags Oxidoreductase
total genus 174
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rj8A01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rj8A02
4PVHA 2BVFA 3D2HA 3RJ8A 4EC3A 2BVGA 5K8EA 5I1WA 2BVHA 2WDWA 2AXRA 3D2DA 3TSHA 2UUVA 3TSJA 3W8XA 1ZR6A 2Y08A 5D79A 4UD8A 3FW8A 2Y3SA 5I1VA 4XLOA 3PQBA 4PWCA 5AWVA 3RJAA 4PWBA 3POPA 5L6GA 4PVKA 3D2JA 3FW7A 3HSUA 4DNSA 3W8ZA 3VTEA 3FWAA 4PVJA 3W8WA 3FW9A 3GSYA 4PVEA 2IPIA 5L6FA 4PZFA 2UUUA 2Y3RA 2Y4GA
chains in the Genus database with same CATH superfamily
1N61C 1VAOA 1W1OA 4JAYA 5FXDA 2BVHA 4PYTA 1V97A 3D2DA 3TSHA 1W1KA 2EXRA 2UUVA 3W8XA 3S1EA 5AE3A 2QKNA 4UD8A 3PM9A 4ZOHB 3DEDA 4PWCA 1E0YA 2P3HA 2E3TA 1AHZA 1FO4A 1HSKA 5HMRA 1JRPA 2R2ZA 4PVJA 3BW7A 3W8WA 2P13A 3AM9A 1ZXIC 3NVZB 5L6FA 1MBTA 3S1CA 2UUUA 1DIIA 3HRDC 2VFRA 5K8EA 5FXPA 3TSJA 2AXRA 5I1WA 1ZR6A 1FIQB 1N62C 2Y08A 3JS8A 5D79A 5HQXA 1MBBA 3NVWB 1E8GA 3LAEA 3S1FA 5I1VA 3DQ0A 4HG0A 4BC9A 2W3SA 3POPA 5L6GA 4PVKA 1E8HA 2VAOA 5G5GB 1W1JA 1FFVC 1AHVA 2VFSA 3FW7A 2W3RA 3VTEA 3FWAA 1W1LA 1WVEA 3KJMA 4BCAA 3GSYA 1JROA 1QLTA 2IPIA 5AE2A 2OAIA 2I0KA 2Y3RA 2Y4GA 2P4PA 4PVHA 2BVFA 2GQUA 2GQTA 2Q85A 2YVSA 5FXFA 4EC3A 2WDWA 4O95A 1DIQA 2VFVA 3AN1A 1WYGA 3SR6B 4BC7A 2Y3SA 2PLIA 4XLOA 4JB1A 2NQWA 3NS1B 3ETRB 3PQBA 2W55A 4BBYA 2VFTA 5AWVA 3TX1A 1N60C 1DZNA 1RM6B 2PLSA 1N5WC 2QPMA 3NVYB 3EUB3 1FFUC 3HSUA 4DNSA 1I19A 3W8ZA 1N63C 3B9JB 1VDVA 1W1SA 3NVVB 5AE1A 2O3GA 5ADZA 4PZFA 2VFUA 4MLAA 2R8DA 2RK5A 1N5XA 1W1QA 3D2HA 3RJ8A 2BVGA 3NRZB 1W1RA 2MBRA 5FXEA 3LLBA 2W54A 1W1MA 3S1DA 3FW8A 4OALA 3C0PA 1UXYA 3AMZA 1T3QC 4PWBA 3RJAA 3D2JA 5G5HB 1WVFA 2Q4WA 4ML8A 1E8FA 3I99A 1F0XA 1SB3B 3FW9A 5HHZA 4PVEA 1AHUA 1QLUA
chains in the Genus database with same CATH topology
1N61C 1VAOA 1W1OA 4JAYA 5FXDA 2BVHA 4PYTA 1V97A 3D2DA 3TSHA 1W1KA 2EXRA 2UUVA 3W8XA 3S1EA 5AE3A 2QKNA 4UD8A 3PM9A 4ZOHB 3DEDA 4PWCA 1E0YA 2P3HA 2E3TA 1AHZA 1FO4A 1HSKA 5HMRA 1JRPA 2R2ZA 4PVJA 3BW7A 3W8WA 2P13A 3AM9A 1ZXIC 3NVZB 5L6FA 1MBTA 3S1CA 2UUUA 1DIIA 3HRDC 2VFRA 5K8EA 5FXPA 3TSJA 2AXRA 5I1WA 1ZR6A 1FIQB 1N62C 2Y08A 3JS8A 5D79A 5HQXA 1MBBA 3NVWB 1E8GA 3LAEA 3S1FA 5I1VA 3DQ0A 4HG0A 4BC9A 2W3SA 3POPA 5L6GA 4PVKA 1E8HA 2VAOA 5G5GB 1W1JA 1FFVC 1AHVA 2VFSA 3FW7A 2W3RA 3VTEA 3FWAA 1W1LA 1WVEA 3KJMA 4BCAA 3GSYA 1JROA 1QLTA 2IPIA 5AE2A 2OAIA 2I0KA 2Y3RA 2Y4GA 2P4PA 4PVHA 2BVFA 2GQUA 2GQTA 2Q85A 2YVSA 5FXFA 4EC3A 2WDWA 4O95A 1DIQA 2VFVA 3AN1A 1WYGA 3SR6B 4BC7A 2Y3SA 2PLIA 4XLOA 4JB1A 2NQWA 3NS1B 3ETRB 3PQBA 2W55A 4BBYA 2VFTA 5AWVA 3TX1A 1N60C 1DZNA 1RM6B 2PLSA 1N5WC 2QPMA 3NVYB 3EUB3 1FFUC 3HSUA 4DNSA 1I19A 3W8ZA 1N63C 3B9JB 1VDVA 1W1SA 3NVVB 5AE1A 2O3GA 5ADZA 4PZFA 2VFUA 4MLAA 2R8DA 2RK5A 1N5XA 1W1QA 3D2HA 3RJ8A 2BVGA 3NRZB 1W1RA 2MBRA 5FXEA 3LLBA 2W54A 1W1MA 3S1DA 3FW8A 4OALA 3C0PA 1UXYA 3AMZA 1T3QC 4PWBA 3RJAA 3D2JA 5G5HB 1WVFA 2Q4WA 4ML8A 1E8FA 3I99A 1F0XA 1SB3B 3FW9A 5HHZA 4PVEA 1AHUA 1QLUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PVH A;  2BVF A;  3D2H A;  3RJ8 A;  4EC3 A;  2BVG A;  5K8E A;  5I1W A;  2BVH A;  2WDW A;  2AXR A;  3D2D A;  3TSH A;  2UUV A;  3TSJ A;  3W8X A;  1ZR6 A;  2Y08 A;  5D79 A;  4UD8 A;  3FW8 A;  2Y3S A;  5I1V A;  4XLO A;  3PQB A;  4PWC A;  5AWV A;  3RJA A;  4PWB A;  3POP A;  5L6G A;  4PVK A;  3D2J A;  3FW7 A;  3HSU A;  4DNS A;  3W8Z A;  3VTE A;  3FWA A;  4PVJ A;  3W8W A;  3FW9 A;  3GSY A;  4PVE A;  2IPI A;  5L6F A;  4PZF A;  2UUU A;  2Y3R A;  2Y4G A; 
#chains in the Genus database with same CATH topology
 1N61 C;  1VAO A;  1W1O A;  4JAY A;  5FXD A;  2BVH A;  4PYT A;  1V97 A;  3D2D A;  3TSH A;  1W1K A;  2EXR A;  2UUV A;  3W8X A;  3S1E A;  5AE3 A;  2QKN A;  4UD8 A;  3PM9 A;  4ZOH B;  3DED A;  4PWC A;  1E0Y A;  2P3H A;  2E3T A;  1AHZ A;  1FO4 A;  1HSK A;  5HMR A;  1JRP A;  2R2Z A;  4PVJ A;  3BW7 A;  3W8W A;  2P13 A;  3AM9 A;  1ZXI C;  3NVZ B;  5L6F A;  1MBT A;  3S1C A;  2UUU A;  1DII A;  3HRD C;  2VFR A;  5K8E A;  5FXP A;  3TSJ A;  2AXR A;  5I1W A;  1ZR6 A;  1FIQ B;  1N62 C;  2Y08 A;  3JS8 A;  5D79 A;  5HQX A;  1MBB A;  3NVW B;  1E8G A;  3LAE A;  3S1F A;  5I1V A;  3DQ0 A;  4HG0 A;  4BC9 A;  2W3S A;  3POP A;  5L6G A;  4PVK A;  1E8H A;  2VAO A;  5G5G B;  1W1J A;  1FFV C;  1AHV A;  2VFS A;  3FW7 A;  2W3R A;  3VTE A;  3FWA A;  1W1L A;  1WVE A;  3KJM A;  4BCA A;  3GSY A;  1JRO A;  1QLT A;  2IPI A;  5AE2 A;  2OAI A;  2I0K A;  2Y3R A;  2Y4G A;  2P4P A;  4PVH A;  2BVF A;  2GQU A;  2GQT A;  2Q85 A;  2YVS A;  5FXF A;  4EC3 A;  2WDW A;  4O95 A;  1DIQ A;  2VFV A;  3AN1 A;  1WYG A;  3SR6 B;  4BC7 A;  2Y3S A;  2PLI A;  4XLO A;  4JB1 A;  2NQW A;  3NS1 B;  3ETR B;  3PQB A;  2W55 A;  4BBY A;  2VFT A;  5AWV A;  3TX1 A;  1N60 C;  1DZN A;  1RM6 B;  2PLS A;  1N5W C;  2QPM A;  3NVY B;  3EUB 3;  1FFU C;  3HSU A;  4DNS A;  1I19 A;  3W8Z A;  1N63 C;  3B9J B;  1VDV A;  1W1S A;  3NVV B;  5AE1 A;  2O3G A;  5ADZ A;  4PZF A;  2VFU A;  4MLA A;  2R8D A;  2RK5 A;  1N5X A;  1W1Q A;  3D2H A;  3RJ8 A;  2BVG A;  3NRZ B;  1W1R A;  2MBR A;  5FXE A;  3LLB A;  2W54 A;  1W1M A;  3S1D A;  3FW8 A;  4OAL A;  3C0P A;  1UXY A;  3AMZ A;  1T3Q C;  4PWB A;  3RJA A;  3D2J A;  5G5H B;  1WVF A;  2Q4W A;  4ML8 A;  1E8F A;  3I99 A;  1F0X A;  1SB3 B;  3FW9 A;  5HHZ A;  4PVE A;  1AHU A;  1QLU A; 
#chains in the Genus database with same CATH homology
 1N61 C;  1VAO A;  1W1O A;  4JAY A;  5FXD A;  2BVH A;  4PYT A;  1V97 A;  3D2D A;  3TSH A;  1W1K A;  2EXR A;  2UUV A;  3W8X A;  3S1E A;  5AE3 A;  2QKN A;  4UD8 A;  3PM9 A;  4ZOH B;  3DED A;  4PWC A;  1E0Y A;  2P3H A;  2E3T A;  1AHZ A;  1FO4 A;  1HSK A;  5HMR A;  1JRP A;  2R2Z A;  4PVJ A;  3BW7 A;  3W8W A;  2P13 A;  3AM9 A;  1ZXI C;  3NVZ B;  5L6F A;  1MBT A;  3S1C A;  2UUU A;  1DII A;  3HRD C;  2VFR A;  5K8E A;  5FXP A;  3TSJ A;  2AXR A;  5I1W A;  1ZR6 A;  1FIQ B;  1N62 C;  2Y08 A;  3JS8 A;  5D79 A;  5HQX A;  1MBB A;  3NVW B;  1E8G A;  3LAE A;  3S1F A;  5I1V A;  3DQ0 A;  4HG0 A;  4BC9 A;  2W3S A;  3POP A;  5L6G A;  4PVK A;  1E8H A;  2VAO A;  5G5G B;  1W1J A;  1FFV C;  1AHV A;  2VFS A;  3FW7 A;  2W3R A;  3VTE A;  3FWA A;  1W1L A;  1WVE A;  3KJM A;  4BCA A;  3GSY A;  1JRO A;  1QLT A;  2IPI A;  5AE2 A;  2OAI A;  2I0K A;  2Y3R A;  2Y4G A;  2P4P A;  4PVH A;  2BVF A;  2GQU A;  2GQT A;  2Q85 A;  2YVS A;  5FXF A;  4EC3 A;  2WDW A;  4O95 A;  1DIQ A;  2VFV A;  3AN1 A;  1WYG A;  3SR6 B;  4BC7 A;  2Y3S A;  2PLI A;  4XLO A;  4JB1 A;  2NQW A;  3NS1 B;  3ETR B;  3PQB A;  2W55 A;  4BBY A;  2VFT A;  5AWV A;  3TX1 A;  1N60 C;  1DZN A;  1RM6 B;  2PLS A;  1N5W C;  2QPM A;  3NVY B;  3EUB 3;  1FFU C;  3HSU A;  4DNS A;  1I19 A;  3W8Z A;  1N63 C;  3B9J B;  1VDV A;  1W1S A;  3NVV B;  5AE1 A;  2O3G A;  5ADZ A;  4PZF A;  2VFU A;  4MLA A;  2R8D A;  2RK5 A;  1N5X A;  1W1Q A;  3D2H A;  3RJ8 A;  2BVG A;  3NRZ B;  1W1R A;  2MBR A;  5FXE A;  3LLB A;  2W54 A;  1W1M A;  3S1D A;  3FW8 A;  4OAL A;  3C0P A;  1UXY A;  3AMZ A;  1T3Q C;  4PWB A;  3RJA A;  3D2J A;  5G5H B;  1WVF A;  2Q4W A;  4ML8 A;  1E8F A;  3I99 A;  1F0X A;  1SB3 B;  3FW9 A;  5HHZ A;  4PVE A;  1AHU A;  1QLU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...