3DQ0A

Maize cytokinin oxidase/dehydrogenase complexed with n6-(3-methoxy-phenyl)adenine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
503
structure length
498
Chain Sequence
RPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Characterization and biological activity of novel purine-derived inhibitor of cytokinin oxidase/dehydrogenase and its potential use for in vivo studies
rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
total genus 170
structure length 498
sequence length 503
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3dq0A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3dq0A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3dq0A03
2BVGA 2RK5A 3DEDA 5HMRA 5FXFA 2OAIA 3D2HA 1AHVA 3FW8A 2P13A 5FXDA 3S1DA 1N61C 4PVEA 1ZXIC 5FXEA 3NVVB 5G5GB 1FFUC 3S1FA 4XLOA 1N60C 1W1RA 3NVYB 1MBBA 4BBYA 4ML8A 1E8FA 1W1KA 2VFTA 3NS1B 1F0XA 4PWCA 4PVHA 5AE2A 1FFVC 4BCAA 3BW7A 1DZNA 3FW7A 2VAOA 3W8WA 3NVWB 3TSJA 3D2JA 1RM6B 3S1CA 2Q85A 3PM9A 1AHUA 1W1JA 2GQTA 3AMZA 1N63C 1WVEA 2O3GA 2YVSA 4JAYA 2P3HA 4OALA 3TSHA 4PZFA 5AE3A 3VTEA 1VAOA 2Q4WA 2VFRA 4PYTA 2EXRA 5D79A 1W1LA 1ZR6A 1I19A 1MBTA 1W1SA 4O95A 4PWBA 2QKNA 2R2ZA 2BVFA 3AM9A 3DQ0A 1N5XA 2W3SA 3D2DA 3FW9A 5HQXA 1QLTA 3NRZB 5ADZA 1JRPA 1WVFA 4EC3A 2W54A 3SR6B 2R8DA 4UD8A 3GSYA 2NQWA 2PLSA 1N62C 5AE1A 3HRDC 1E0YA 3LAEA 1E8GA 1JROA 3B9JB 2QPMA 4HG0A 4PVJA 1UXYA 2GQUA 3C0PA 5HHZA 3I99A 3TX1A 2I0KA 1FO4A 1V97A 3ETRB 3AN1A 3JS8A 1T3QC 2MBRA 4MLAA 1E8HA 3LLBA 1W1OA 2VFVA 1W1MA 1WYGA 1QLUA 5FXPA 2PLIA 2E3TA 3KJMA 4PVKA 4ZOHB 3W8ZA 1SB3B 3W8XA 1DIQA 3NVZB 2W55A 1AHZA 2VFSA 2P4PA 2VFUA 3EUB3 1VDVA 2W3RA 4DNSA 4BC7A 3S1EA 1W1QA 4JB1A 1N5WC 1DIIA 1FIQB 2AXRA 3FWAA 4BC9A 5G5HB 2BVHA 1HSKA
chains in the Genus database with same CATH superfamily
2BVGA 2RK5A 3DEDA 5HMRA 5FXFA 2OAIA 3D2HA 1AHVA 3FW8A 2P13A 5FXDA 3S1DA 1N61C 4PVEA 1ZXIC 3EJDB 3NVVB 5FXEA 5G5GB 1FFUC 3S1FA 4XLOA 1N60C 3RJAA 1W1RA 2UUVA 3NVYB 1MBBA 4BBYA 4ML8A 1E8FA 1W1KA 2VFTA 3NS1B 1F0XA 4PWCA 2Y3RA 4PVHA 5AE2A 1FFVC 4BCAA 3BW7A 2UUUA 1DZNA 3FW7A 2VAOA 3W8WA 3NVWB 3TSJA 3D2JA 1RM6B 2IPIA 3S1CA 2Q85A 3PM9A 1AHUA 1W1JA 2GQTA 3AMZA 1N63C 1WVEA 2O3GA 2YVSA 4JAYA 2P3HA 3RJ8A 2Y3SA 4OALA 3TSHA 4PZFA 5AE3A 3VTEA 1VAOA 3EJBB 5L6FA 2Q4WA 2VFRA 4PYTA 2EXRA 2Y4GA 5D79A 1W1LA 1ZR6A 1I19A 1MBTA 1W1SA 4O95A 4PWBA 2QKNA 2R2ZA 2Y08A 5I1WA 2BVFA 3AM9A 3DQ0A 1N5XA 2W3SA 5K8EA 3D2DA 3FW9A 5HQXA 1QLTA 2WDWA 3NRZB 5ADZA 1JRPA 1WVFA 4EC3A 2W54A 3SR6B 2R8DA 5AWVA 4UD8A 3GSYA 2NQWA 2PLSA 1N62C 5AE1A 3HRDC 1E0YA 3POPA 3LAEA 1E8GA 1JROA 3B9JB 2QPMA 4HG0A 4PVJA 1UXYA 2GQUA 3C0PA 5HHZA 3I99A 3TX1A 2I0KA 1FO4A 1V97A 3ETRB 3AN1A 3JS8A 1T3QC 2MBRA 4MLAA 1E8HA 3LLBA 1W1OA 2VFVA 1W1MA 3EJEB 5I1VA 1WYGA 1QLUA 5L6GA 5FXPA 2PLIA 2E3TA 3HSUA 3KJMA 4PVKA 4ZOHB 3W8ZA 1SB3B 3W8XA 1DIQA 3NVZB 2W55A 1AHZA 2VFSA 2P4PA 3PQBA 2VFUA 3EUB3 1VDVA 2W3RA 4DNSA 4BC7A 3S1EA 1W1QA 4JB1A 1N5WC 1DIIA 1FIQB 2AXRA 3FWAA 4BC9A 5G5HB 2BVHA 1HSKA
chains in the Genus database with same CATH topology
2BVGA 2RK5A 3DEDA 5HMRA 5FXFA 2OAIA 3D2HA 1AHVA 3FW8A 2P13A 5FXDA 3S1DA 1N61C 4PVEA 1ZXIC 5FXEA 3NVVB 5G5GB 1FFUC 3S1FA 4XLOA 1N60C 3RJAA 1W1RA 2UUVA 3NVYB 1MBBA 4BBYA 4ML8A 1E8FA 1W1KA 2VFTA 3NS1B 1F0XA 4PWCA 2Y3RA 4PVHA 5AE2A 1FFVC 4BCAA 3BW7A 2UUUA 1DZNA 3FW7A 2VAOA 3W8WA 3NVWB 3TSJA 3D2JA 1RM6B 2IPIA 3S1CA 2Q85A 3PM9A 1AHUA 1W1JA 2GQTA 3AMZA 1N63C 1WVEA 2O3GA 2YVSA 4JAYA 2P3HA 3RJ8A 2Y3SA 4OALA 3TSHA 4PZFA 5AE3A 3VTEA 1VAOA 5L6FA 2Q4WA 2VFRA 4PYTA 2EXRA 2Y4GA 5D79A 1W1LA 1ZR6A 1I19A 1MBTA 1W1SA 4O95A 4PWBA 2QKNA 2R2ZA 2Y08A 5I1WA 2BVFA 3AM9A 3DQ0A 1N5XA 2W3SA 5K8EA 3D2DA 3FW9A 5HQXA 1QLTA 2WDWA 3NRZB 5ADZA 1JRPA 1WVFA 4EC3A 2W54A 3SR6B 2R8DA 5AWVA 4UD8A 3GSYA 2NQWA 2PLSA 1N62C 5AE1A 3HRDC 1E0YA 3POPA 3LAEA 1E8GA 1JROA 3B9JB 2QPMA 4HG0A 4PVJA 1UXYA 2GQUA 3C0PA 5HHZA 3I99A 3TX1A 2I0KA 1FO4A 1V97A 3ETRB 3AN1A 3JS8A 1T3QC 2MBRA 4MLAA 1E8HA 3LLBA 1W1OA 2VFVA 1W1MA 5I1VA 1WYGA 1QLUA 5L6GA 5FXPA 2PLIA 2E3TA 3HSUA 3KJMA 4PVKA 4ZOHB 3W8ZA 1SB3B 3W8XA 1DIQA 3NVZB 2W55A 1AHZA 2VFSA 2P4PA 3PQBA 2VFUA 3EUB3 1VDVA 2W3RA 4DNSA 4BC7A 3S1EA 1W1QA 4JB1A 1N5WC 1DIIA 1FIQB 2AXRA 3FWAA 4BC9A 5G5HB 2BVHA 1HSKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BVG A;  2RK5 A;  3DED A;  5HMR A;  5FXF A;  2OAI A;  3D2H A;  1AHV A;  3FW8 A;  2P13 A;  5FXD A;  3S1D A;  1N61 C;  4PVE A;  1ZXI C;  5FXE A;  3NVV B;  5G5G B;  1FFU C;  3S1F A;  4XLO A;  1N60 C;  1W1R A;  3NVY B;  1MBB A;  4BBY A;  4ML8 A;  1E8F A;  1W1K A;  2VFT A;  3NS1 B;  1F0X A;  4PWC A;  4PVH A;  5AE2 A;  1FFV C;  4BCA A;  3BW7 A;  1DZN A;  3FW7 A;  2VAO A;  3W8W A;  3NVW B;  3TSJ A;  3D2J A;  1RM6 B;  3S1C A;  2Q85 A;  3PM9 A;  1AHU A;  1W1J A;  2GQT A;  3AMZ A;  1N63 C;  1WVE A;  2O3G A;  2YVS A;  4JAY A;  2P3H A;  4OAL A;  3TSH A;  4PZF A;  5AE3 A;  3VTE A;  1VAO A;  2Q4W A;  2VFR A;  4PYT A;  2EXR A;  5D79 A;  1W1L A;  1ZR6 A;  1I19 A;  1MBT A;  1W1S A;  4O95 A;  4PWB A;  2QKN A;  2R2Z A;  2BVF A;  3AM9 A;  3DQ0 A;  1N5X A;  2W3S A;  3D2D A;  3FW9 A;  5HQX A;  1QLT A;  3NRZ B;  5ADZ A;  1JRP A;  1WVF A;  4EC3 A;  2W54 A;  3SR6 B;  2R8D A;  4UD8 A;  3GSY A;  2NQW A;  2PLS A;  1N62 C;  5AE1 A;  3HRD C;  1E0Y A;  3LAE A;  1E8G A;  1JRO A;  3B9J B;  2QPM A;  4HG0 A;  4PVJ A;  1UXY A;  2GQU A;  3C0P A;  5HHZ A;  3I99 A;  3TX1 A;  2I0K A;  1FO4 A;  1V97 A;  3ETR B;  3AN1 A;  3JS8 A;  1T3Q C;  2MBR A;  4MLA A;  1E8H A;  3LLB A;  1W1O A;  2VFV A;  1W1M A;  1WYG A;  1QLU A;  5FXP A;  2PLI A;  2E3T A;  3KJM A;  4PVK A;  4ZOH B;  3W8Z A;  1SB3 B;  3W8X A;  1DIQ A;  3NVZ B;  2W55 A;  1AHZ A;  2VFS A;  2P4P A;  2VFU A;  3EUB 3;  1VDV A;  2W3R A;  4DNS A;  4BC7 A;  3S1E A;  1W1Q A;  4JB1 A;  1N5W C;  1DII A;  1FIQ B;  2AXR A;  3FWA A;  4BC9 A;  5G5H B;  2BVH A;  1HSK A; 
#chains in the Genus database with same CATH topology
 2BVG A;  2RK5 A;  3DED A;  5HMR A;  5FXF A;  2OAI A;  3D2H A;  1AHV A;  3FW8 A;  2P13 A;  5FXD A;  3S1D A;  1N61 C;  4PVE A;  1ZXI C;  3EJD B;  3NVV B;  5FXE A;  5G5G B;  1FFU C;  3S1F A;  4XLO A;  1N60 C;  3RJA A;  1W1R A;  2UUV A;  3NVY B;  1MBB A;  4BBY A;  4ML8 A;  1E8F A;  1W1K A;  2VFT A;  3NS1 B;  1F0X A;  4PWC A;  2Y3R A;  4PVH A;  5AE2 A;  1FFV C;  4BCA A;  3BW7 A;  2UUU A;  1DZN A;  3FW7 A;  2VAO A;  3W8W A;  3NVW B;  3TSJ A;  3D2J A;  1RM6 B;  2IPI A;  3S1C A;  2Q85 A;  3PM9 A;  1AHU A;  1W1J A;  2GQT A;  3AMZ A;  1N63 C;  1WVE A;  2O3G A;  2YVS A;  4JAY A;  2P3H A;  3RJ8 A;  2Y3S A;  4OAL A;  3TSH A;  4PZF A;  5AE3 A;  3VTE A;  1VAO A;  3EJB B;  5L6F A;  2Q4W A;  2VFR A;  4PYT A;  2EXR A;  2Y4G A;  5D79 A;  1W1L A;  1ZR6 A;  1I19 A;  1MBT A;  1W1S A;  4O95 A;  4PWB A;  2QKN A;  2R2Z A;  2Y08 A;  5I1W A;  2BVF A;  3AM9 A;  3DQ0 A;  1N5X A;  2W3S A;  5K8E A;  3D2D A;  3FW9 A;  5HQX A;  1QLT A;  2WDW A;  3NRZ B;  5ADZ A;  1JRP A;  1WVF A;  4EC3 A;  2W54 A;  3SR6 B;  2R8D A;  5AWV A;  4UD8 A;  3GSY A;  2NQW A;  2PLS A;  1N62 C;  5AE1 A;  3HRD C;  1E0Y A;  3POP A;  3LAE A;  1E8G A;  1JRO A;  3B9J B;  2QPM A;  4HG0 A;  4PVJ A;  1UXY A;  2GQU A;  3C0P A;  5HHZ A;  3I99 A;  3TX1 A;  2I0K A;  1FO4 A;  1V97 A;  3ETR B;  3AN1 A;  3JS8 A;  1T3Q C;  2MBR A;  4MLA A;  1E8H A;  3LLB A;  1W1O A;  2VFV A;  1W1M A;  3EJE B;  5I1V A;  1WYG A;  1QLU A;  5L6G A;  5FXP A;  2PLI A;  2E3T A;  3HSU A;  3KJM A;  4PVK A;  4ZOH B;  3W8Z A;  1SB3 B;  3W8X A;  1DIQ A;  3NVZ B;  2W55 A;  1AHZ A;  2VFS A;  2P4P A;  3PQB A;  2VFU A;  3EUB 3;  1VDV A;  2W3R A;  4DNS A;  4BC7 A;  3S1E A;  1W1Q A;  4JB1 A;  1N5W C;  1DII A;  1FIQ B;  2AXR A;  3FWA A;  4BC9 A;  5G5H B;  2BVH A;  1HSK A; 
#chains in the Genus database with same CATH homology
 2BVG A;  2RK5 A;  3DED A;  5HMR A;  5FXF A;  2OAI A;  3D2H A;  1AHV A;  3FW8 A;  2P13 A;  5FXD A;  3S1D A;  1N61 C;  4PVE A;  1ZXI C;  5FXE A;  3NVV B;  5G5G B;  1FFU C;  3S1F A;  4XLO A;  1N60 C;  3RJA A;  1W1R A;  2UUV A;  3NVY B;  1MBB A;  4BBY A;  4ML8 A;  1E8F A;  1W1K A;  2VFT A;  3NS1 B;  1F0X A;  4PWC A;  2Y3R A;  4PVH A;  5AE2 A;  1FFV C;  4BCA A;  3BW7 A;  2UUU A;  1DZN A;  3FW7 A;  2VAO A;  3W8W A;  3NVW B;  3TSJ A;  3D2J A;  1RM6 B;  2IPI A;  3S1C A;  2Q85 A;  3PM9 A;  1AHU A;  1W1J A;  2GQT A;  3AMZ A;  1N63 C;  1WVE A;  2O3G A;  2YVS A;  4JAY A;  2P3H A;  3RJ8 A;  2Y3S A;  4OAL A;  3TSH A;  4PZF A;  5AE3 A;  3VTE A;  1VAO A;  5L6F A;  2Q4W A;  2VFR A;  4PYT A;  2EXR A;  2Y4G A;  5D79 A;  1W1L A;  1ZR6 A;  1I19 A;  1MBT A;  1W1S A;  4O95 A;  4PWB A;  2QKN A;  2R2Z A;  2Y08 A;  5I1W A;  2BVF A;  3AM9 A;  3DQ0 A;  1N5X A;  2W3S A;  5K8E A;  3D2D A;  3FW9 A;  5HQX A;  1QLT A;  2WDW A;  3NRZ B;  5ADZ A;  1JRP A;  1WVF A;  4EC3 A;  2W54 A;  3SR6 B;  2R8D A;  5AWV A;  4UD8 A;  3GSY A;  2NQW A;  2PLS A;  1N62 C;  5AE1 A;  3HRD C;  1E0Y A;  3POP A;  3LAE A;  1E8G A;  1JRO A;  3B9J B;  2QPM A;  4HG0 A;  4PVJ A;  1UXY A;  2GQU A;  3C0P A;  5HHZ A;  3I99 A;  3TX1 A;  2I0K A;  1FO4 A;  1V97 A;  3ETR B;  3AN1 A;  3JS8 A;  1T3Q C;  2MBR A;  4MLA A;  1E8H A;  3LLB A;  1W1O A;  2VFV A;  1W1M A;  5I1V A;  1WYG A;  1QLU A;  5L6G A;  5FXP A;  2PLI A;  2E3T A;  3HSU A;  3KJM A;  4PVK A;  4ZOH B;  3W8Z A;  1SB3 B;  3W8X A;  1DIQ A;  3NVZ B;  2W55 A;  1AHZ A;  2VFS A;  2P4P A;  3PQB A;  2VFU A;  3EUB 3;  1VDV A;  2W3R A;  4DNS A;  4BC7 A;  3S1E A;  1W1Q A;  4JB1 A;  1N5W C;  1DII A;  1FIQ B;  2AXR A;  3FWA A;  4BC9 A;  5G5H B;  2BVH A;  1HSK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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