3DQ0A

Maize cytokinin oxidase/dehydrogenase complexed with n6-(3-methoxy-phenyl)adenine
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
503
structure length
498
Chain Sequence
RPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Cytokinin dehydrogenase 1
publication title Characterization and biological activity of novel purine-derived inhibitor of cytokinin oxidase/dehydrogenase and its potential use for in vivo studies
rcsb
source organism Zea mays
total genus 170
structure length 498
sequence length 503
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2008-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3dq0A01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3dq0A02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 3dq0A03
1V97A 3DQ0A 4BBYA 5HQXA 3SR6B 2QPMA 4PZFA 4PYTA 1HSKA 1FIQB 5AE1A 4JB1A 5AE2A 3ETRB 3NRZB 1E8GA 1DIIA 2Q85A 3S1EA 2P13A 1FO4A 4O95A 3FWAA 5FXDA 3LAEA 3S1DA 4XLOA 4JAYA 1RM6B 3TX1A 5HHZA 2BVFA 1N60C 2VAOA 4PVJA 4ZOHB 2MBRA 3TSHA 3I99A 4ML8A 3NVZB 3NVYB 2VFTA 2O3GA 1W1LA 2W54A 4OALA 5FXPA 5ADZA 1ZXIC 2GQUA 1W1QA 5HMRA 3S1FA 1FFVC 1E0YA 1T3QC 1W1JA 4PWCA 2RK5A 1AHVA 2GQTA 2P3HA 2BVGA 2YVSA 1E8FA 1UXYA 4PVHA 2VFUA 1JROA 1W1OA 2P4PA 3LLBA 3FW7A 2VFVA 5FXFA 1N62C 4DNSA 1DIQA 3S1CA 1FFUC 3HRDC 1VAOA 1E8HA 3W8WA 1N61C 3GSYA 3PM9A 2NQWA 4PVKA 3NVWB 2R2ZA 1VDVA 3B9JB 1N5XA 2W3SA 3NS1B 1I19A 1N5WC 5FXEA 4UD8A 2I0KA 5D79A 3JS8A 4BC9A 3EUB3 2OAIA 3TSJA 1N63C 2PLSA 5G5HB 4PVEA 1WYGA 3FW9A 2VFRA 2E3TA 4MLAA 2PLIA 2Q4WA 4BC7A 2W55A 1W1MA 3D2DA 1SB3B 2QKNA 4PWBA 1QLTA 1WVFA 1W1RA 4BCAA 1JRPA 1W1SA 1F0XA 2BVHA 3KJMA 3W8XA 1W1KA 1WVEA 3BW7A 5G5GB 1QLUA 3DEDA 3AMZA 3AM9A 2EXRA 1MBBA 3C0PA 3FW8A 1MBTA 2AXRA 1ZR6A 3W8ZA 1AHZA 4EC3A 3AN1A 3VTEA 2VFSA 1DZNA 3D2HA 3NVVB 2R8DA 4HG0A 2W3RA 1AHUA 3D2JA 5AE3A
chains in the Genus database with same CATH superfamily
2Y08A 1V97A 3DQ0A 4BBYA 5HQXA 3SR6B 2QPMA 4PZFA 2Y3SA 4PYTA 1HSKA 1FIQB 5AE1A 4JB1A 5AE2A 3ETRB 3NRZB 2WDWA 1E8GA 1DIIA 2Q85A 3S1EA 2P13A 1FO4A 4O95A 3FWAA 5FXDA 3LAEA 3S1DA 4XLOA 4JAYA 1RM6B 3TX1A 5HHZA 2BVFA 1N60C 2VAOA 4PVJA 4ZOHB 2MBRA 3TSHA 3RJAA 3I99A 4ML8A 3EJBB 3NVYB 3NVZB 2VFTA 3HSUA 2Y3RA 3PQBA 2O3GA 5L6GA 5L6FA 1W1LA 2W54A 2UUUA 4OALA 5FXPA 5ADZA 1ZXIC 2GQUA 2IPIA 1W1QA 5HMRA 5I1VA 3S1FA 1FFVC 1E0YA 1T3QC 1W1JA 4PWCA 2RK5A 1AHVA 2GQTA 2P3HA 2BVGA 2YVSA 2UUVA 1E8FA 1UXYA 4PVHA 2VFUA 1JROA 1W1OA 2P4PA 3LLBA 3FW7A 2VFVA 5FXFA 1N62C 4DNSA 1DIQA 3EJEB 3S1CA 1FFUC 3HRDC 1VAOA 1E8HA 3W8WA 1N61C 3GSYA 2Y4GA 3PM9A 2NQWA 4PVKA 3NVWB 2R2ZA 5K8EA 1VDVA 3B9JB 1N5XA 2W3SA 3NS1B 1I19A 1N5WC 5FXEA 4UD8A 2I0KA 5D79A 3JS8A 4BC9A 3EUB3 2OAIA 3TSJA 1N63C 2PLSA 3RJ8A 5G5HB 4PVEA 1WYGA 3FW9A 2VFRA 2E3TA 4MLAA 2PLIA 2Q4WA 4BC7A 2W55A 1W1MA 3D2DA 1SB3B 2QKNA 4PWBA 3POPA 1QLTA 1WVFA 1W1RA 4BCAA 1JRPA 1W1SA 1F0XA 2BVHA 3KJMA 5I1WA 3W8XA 1W1KA 1WVEA 3BW7A 5G5GB 1QLUA 3DEDA 3AMZA 3AM9A 2EXRA 1MBBA 3C0PA 3FW8A 1MBTA 5AWVA 2AXRA 1ZR6A 3W8ZA 1AHZA 4EC3A 3AN1A 3VTEA 2VFSA 1DZNA 3EJDB 3D2HA 3NVVB 2R8DA 4HG0A 2W3RA 1AHUA 3D2JA 5AE3A
chains in the Genus database with same CATH topology
2Y08A 1V97A 3DQ0A 4BBYA 5HQXA 3SR6B 2QPMA 4PZFA 2Y3SA 4PYTA 1HSKA 1FIQB 5AE1A 4JB1A 5AE2A 3ETRB 3NRZB 2WDWA 1E8GA 1DIIA 2Q85A 3S1EA 2P13A 1FO4A 4O95A 3FWAA 5FXDA 3LAEA 3S1DA 4XLOA 4JAYA 1RM6B 3TX1A 5HHZA 2BVFA 1N60C 2VAOA 4PVJA 4ZOHB 2MBRA 3TSHA 3RJAA 3I99A 4ML8A 3NVZB 3NVYB 2VFTA 3HSUA 2Y3RA 3PQBA 2O3GA 5L6GA 5L6FA 1W1LA 2W54A 2UUUA 4OALA 5FXPA 5ADZA 1ZXIC 2GQUA 2IPIA 1W1QA 5HMRA 5I1VA 3S1FA 1FFVC 1E0YA 1T3QC 1W1JA 4PWCA 2RK5A 1AHVA 2GQTA 2P3HA 2BVGA 2YVSA 2UUVA 1E8FA 1UXYA 4PVHA 2VFUA 1JROA 1W1OA 2P4PA 3LLBA 3FW7A 2VFVA 5FXFA 1N62C 4DNSA 1DIQA 3S1CA 1FFUC 3HRDC 1VAOA 1E8HA 3W8WA 1N61C 3GSYA 2Y4GA 3PM9A 2NQWA 4PVKA 3NVWB 2R2ZA 5K8EA 1VDVA 3B9JB 1N5XA 2W3SA 3NS1B 1I19A 1N5WC 5FXEA 4UD8A 2I0KA 5D79A 3JS8A 4BC9A 3EUB3 2OAIA 3TSJA 1N63C 2PLSA 3RJ8A 5G5HB 4PVEA 1WYGA 3FW9A 2VFRA 2E3TA 4MLAA 2PLIA 2Q4WA 4BC7A 2W55A 1W1MA 3D2DA 1SB3B 2QKNA 4PWBA 3POPA 1QLTA 1WVFA 1W1RA 4BCAA 1JRPA 1W1SA 1F0XA 2BVHA 3KJMA 5I1WA 3W8XA 1W1KA 1WVEA 3BW7A 5G5GB 1QLUA 3DEDA 3AMZA 3AM9A 2EXRA 1MBBA 3C0PA 3FW8A 1MBTA 5AWVA 2AXRA 1ZR6A 3W8ZA 1AHZA 4EC3A 3AN1A 3VTEA 2VFSA 1DZNA 3D2HA 3NVVB 2R8DA 4HG0A 2W3RA 1AHUA 3D2JA 5AE3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V97 A;  3DQ0 A;  4BBY A;  5HQX A;  3SR6 B;  2QPM A;  4PZF A;  4PYT A;  1HSK A;  1FIQ B;  5AE1 A;  4JB1 A;  5AE2 A;  3ETR B;  3NRZ B;  1E8G A;  1DII A;  2Q85 A;  3S1E A;  2P13 A;  1FO4 A;  4O95 A;  3FWA A;  5FXD A;  3LAE A;  3S1D A;  4XLO A;  4JAY A;  1RM6 B;  3TX1 A;  5HHZ A;  2BVF A;  1N60 C;  2VAO A;  4PVJ A;  4ZOH B;  2MBR A;  3TSH A;  3I99 A;  4ML8 A;  3NVZ B;  3NVY B;  2VFT A;  2O3G A;  1W1L A;  2W54 A;  4OAL A;  5FXP A;  5ADZ A;  1ZXI C;  2GQU A;  1W1Q A;  5HMR A;  3S1F A;  1FFV C;  1E0Y A;  1T3Q C;  1W1J A;  4PWC A;  2RK5 A;  1AHV A;  2GQT A;  2P3H A;  2BVG A;  2YVS A;  1E8F A;  1UXY A;  4PVH A;  2VFU A;  1JRO A;  1W1O A;  2P4P A;  3LLB A;  3FW7 A;  2VFV A;  5FXF A;  1N62 C;  4DNS A;  1DIQ A;  3S1C A;  1FFU C;  3HRD C;  1VAO A;  1E8H A;  3W8W A;  1N61 C;  3GSY A;  3PM9 A;  2NQW A;  4PVK A;  3NVW B;  2R2Z A;  1VDV A;  3B9J B;  1N5X A;  2W3S A;  3NS1 B;  1I19 A;  1N5W C;  5FXE A;  4UD8 A;  2I0K A;  5D79 A;  3JS8 A;  4BC9 A;  3EUB 3;  2OAI A;  3TSJ A;  1N63 C;  2PLS A;  5G5H B;  4PVE A;  1WYG A;  3FW9 A;  2VFR A;  2E3T A;  4MLA A;  2PLI A;  2Q4W A;  4BC7 A;  2W55 A;  1W1M A;  3D2D A;  1SB3 B;  2QKN A;  4PWB A;  1QLT A;  1WVF A;  1W1R A;  4BCA A;  1JRP A;  1W1S A;  1F0X A;  2BVH A;  3KJM A;  3W8X A;  1W1K A;  1WVE A;  3BW7 A;  5G5G B;  1QLU A;  3DED A;  3AMZ A;  3AM9 A;  2EXR A;  1MBB A;  3C0P A;  3FW8 A;  1MBT A;  2AXR A;  1ZR6 A;  3W8Z A;  1AHZ A;  4EC3 A;  3AN1 A;  3VTE A;  2VFS A;  1DZN A;  3D2H A;  3NVV B;  2R8D A;  4HG0 A;  2W3R A;  1AHU A;  3D2J A;  5AE3 A; 
#chains in the Genus database with same CATH topology
 2Y08 A;  1V97 A;  3DQ0 A;  4BBY A;  5HQX A;  3SR6 B;  2QPM A;  4PZF A;  2Y3S A;  4PYT A;  1HSK A;  1FIQ B;  5AE1 A;  4JB1 A;  5AE2 A;  3ETR B;  3NRZ B;  2WDW A;  1E8G A;  1DII A;  2Q85 A;  3S1E A;  2P13 A;  1FO4 A;  4O95 A;  3FWA A;  5FXD A;  3LAE A;  3S1D A;  4XLO A;  4JAY A;  1RM6 B;  3TX1 A;  5HHZ A;  2BVF A;  1N60 C;  2VAO A;  4PVJ A;  4ZOH B;  2MBR A;  3TSH A;  3RJA A;  3I99 A;  4ML8 A;  3EJB B;  3NVY B;  3NVZ B;  2VFT A;  3HSU A;  2Y3R A;  3PQB A;  2O3G A;  5L6G A;  5L6F A;  1W1L A;  2W54 A;  2UUU A;  4OAL A;  5FXP A;  5ADZ A;  1ZXI C;  2GQU A;  2IPI A;  1W1Q A;  5HMR A;  5I1V A;  3S1F A;  1FFV C;  1E0Y A;  1T3Q C;  1W1J A;  4PWC A;  2RK5 A;  1AHV A;  2GQT A;  2P3H A;  2BVG A;  2YVS A;  2UUV A;  1E8F A;  1UXY A;  4PVH A;  2VFU A;  1JRO A;  1W1O A;  2P4P A;  3LLB A;  3FW7 A;  2VFV A;  5FXF A;  1N62 C;  4DNS A;  1DIQ A;  3EJE B;  3S1C A;  1FFU C;  3HRD C;  1VAO A;  1E8H A;  3W8W A;  1N61 C;  3GSY A;  2Y4G A;  3PM9 A;  2NQW A;  4PVK A;  3NVW B;  2R2Z A;  5K8E A;  1VDV A;  3B9J B;  1N5X A;  2W3S A;  3NS1 B;  1I19 A;  1N5W C;  5FXE A;  4UD8 A;  2I0K A;  5D79 A;  3JS8 A;  4BC9 A;  3EUB 3;  2OAI A;  3TSJ A;  1N63 C;  2PLS A;  3RJ8 A;  5G5H B;  4PVE A;  1WYG A;  3FW9 A;  2VFR A;  2E3T A;  4MLA A;  2PLI A;  2Q4W A;  4BC7 A;  2W55 A;  1W1M A;  3D2D A;  1SB3 B;  2QKN A;  4PWB A;  3POP A;  1QLT A;  1WVF A;  1W1R A;  4BCA A;  1JRP A;  1W1S A;  1F0X A;  2BVH A;  3KJM A;  5I1W A;  3W8X A;  1W1K A;  1WVE A;  3BW7 A;  5G5G B;  1QLU A;  3DED A;  3AMZ A;  3AM9 A;  2EXR A;  1MBB A;  3C0P A;  3FW8 A;  1MBT A;  5AWV A;  2AXR A;  1ZR6 A;  3W8Z A;  1AHZ A;  4EC3 A;  3AN1 A;  3VTE A;  2VFS A;  1DZN A;  3EJD B;  3D2H A;  3NVV B;  2R8D A;  4HG0 A;  2W3R A;  1AHU A;  3D2J A;  5AE3 A; 
#chains in the Genus database with same CATH homology
 2Y08 A;  1V97 A;  3DQ0 A;  4BBY A;  5HQX A;  3SR6 B;  2QPM A;  4PZF A;  2Y3S A;  4PYT A;  1HSK A;  1FIQ B;  5AE1 A;  4JB1 A;  5AE2 A;  3ETR B;  3NRZ B;  2WDW A;  1E8G A;  1DII A;  2Q85 A;  3S1E A;  2P13 A;  1FO4 A;  4O95 A;  3FWA A;  5FXD A;  3LAE A;  3S1D A;  4XLO A;  4JAY A;  1RM6 B;  3TX1 A;  5HHZ A;  2BVF A;  1N60 C;  2VAO A;  4PVJ A;  4ZOH B;  2MBR A;  3TSH A;  3RJA A;  3I99 A;  4ML8 A;  3NVZ B;  3NVY B;  2VFT A;  3HSU A;  2Y3R A;  3PQB A;  2O3G A;  5L6G A;  5L6F A;  1W1L A;  2W54 A;  2UUU A;  4OAL A;  5FXP A;  5ADZ A;  1ZXI C;  2GQU A;  2IPI A;  1W1Q A;  5HMR A;  5I1V A;  3S1F A;  1FFV C;  1E0Y A;  1T3Q C;  1W1J A;  4PWC A;  2RK5 A;  1AHV A;  2GQT A;  2P3H A;  2BVG A;  2YVS A;  2UUV A;  1E8F A;  1UXY A;  4PVH A;  2VFU A;  1JRO A;  1W1O A;  2P4P A;  3LLB A;  3FW7 A;  2VFV A;  5FXF A;  1N62 C;  4DNS A;  1DIQ A;  3S1C A;  1FFU C;  3HRD C;  1VAO A;  1E8H A;  3W8W A;  1N61 C;  3GSY A;  2Y4G A;  3PM9 A;  2NQW A;  4PVK A;  3NVW B;  2R2Z A;  5K8E A;  1VDV A;  3B9J B;  1N5X A;  2W3S A;  3NS1 B;  1I19 A;  1N5W C;  5FXE A;  4UD8 A;  2I0K A;  5D79 A;  3JS8 A;  4BC9 A;  3EUB 3;  2OAI A;  3TSJ A;  1N63 C;  2PLS A;  3RJ8 A;  5G5H B;  4PVE A;  1WYG A;  3FW9 A;  2VFR A;  2E3T A;  4MLA A;  2PLI A;  2Q4W A;  4BC7 A;  2W55 A;  1W1M A;  3D2D A;  1SB3 B;  2QKN A;  4PWB A;  3POP A;  1QLT A;  1WVF A;  1W1R A;  4BCA A;  1JRP A;  1W1S A;  1F0X A;  2BVH A;  3KJM A;  5I1W A;  3W8X A;  1W1K A;  1WVE A;  3BW7 A;  5G5G B;  1QLU A;  3DED A;  3AMZ A;  3AM9 A;  2EXR A;  1MBB A;  3C0P A;  3FW8 A;  1MBT A;  5AWV A;  2AXR A;  1ZR6 A;  3W8Z A;  1AHZ A;  4EC3 A;  3AN1 A;  3VTE A;  2VFS A;  1DZN A;  3D2H A;  3NVV B;  2R8D A;  4HG0 A;  2W3R A;  1AHU A;  3D2J A;  5AE3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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