1E8FA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
total genus 176
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8fA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8fA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8fA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8fA03
1FO4A 4ML8A 2P3HA 2QKNA 1W1LA 1T3QC 2Q4WA 3AMZA 2W55A 1VAOA 4EC3A 1DIQA 2PLIA 4PYTA 2MBRA 4JAYA 2GQUA 2VFTA 3W8ZA 1N60C 1DIIA 1V97A 1MBTA 3GSYA 4PWCA 4HG0A 2BVFA 2E3TA 2R8DA 1N61C 2QPMA 2VAOA 5FXFA 3NVYB 2P4PA 1ZXIC 3SR6B 5HHZA 1VDVA 3S1DA 1FFUC 2W54A 3NS1B 3B9JB 5FXDA 1ZR6A 5FXEA 4BCAA 1W1KA 4O95A 2YVSA 1FFVC 2NQWA 1I19A 4DNSA 1N5WC 5AE1A 2VFUA 3D2DA 2BVHA 3LLBA 1E8GA 3AM9A 2AXRA 4MLAA 1QLUA 5AE2A 3S1EA 3W8XA 2P13A 3C0PA 2RK5A 3S1CA 4PVEA 1W1MA 3FW9A 1WYGA 2VFSA 4PVJA 3FWAA 3D2HA 3TX1A 2VFVA 1UXYA 1QLTA 3AN1A 1E8FA 5HMRA 1MBBA 3NRZB 3NVZB 2R2ZA 1WVEA 1SB3B 5ADZA 3DQ0A 2GQTA 5G5HB 5HQXA 4BBYA 3DEDA 3NVWB 2W3SA 3FW8A 3NVVB 4XLOA 1W1QA 3TSHA 1F0XA 1W1RA 1W1SA 1AHZA 4PZFA 1N5XA 1E0YA 5FXPA 3ETRB 4UD8A 3EUB3 3KJMA 4OALA 1AHUA 1HSKA 3I99A 3VTEA 1DZNA 2EXRA 3S1FA 3HRDC 1WVFA 1AHVA 5AE3A 4BC9A 1JROA 2VFRA 2W3RA 3TSJA 3PM9A 4PWBA 5D79A 1FIQB 1N62C 3LAEA 2I0KA 3JS8A 3D2JA 2OAIA 1W1JA 1JRPA 2BVGA 2PLSA 2Q85A 4PVHA 4BC7A 3W8WA 1RM6B 4JB1A 1E8HA 1W1OA 1N63C 4ZOHB 3BW7A 3FW7A 2O3GA 4PVKA 5G5GB
chains in the Genus database with same CATH superfamily
1FO4A 4ML8A 2P3HA 2Y08A 2QKNA 1W1LA 1T3QC 2Q4WA 3AMZA 2W55A 3EJDB 1VAOA 4EC3A 1DIQA 2PLIA 4PYTA 5I1WA 2MBRA 4JAYA 2GQUA 2VFTA 3W8ZA 1N60C 1DIIA 1V97A 1MBTA 3GSYA 4PWCA 4HG0A 2BVFA 2E3TA 2R8DA 1N61C 5AWVA 2QPMA 2VAOA 5FXFA 3NVYB 2P4PA 1ZXIC 3SR6B 5HHZA 1VDVA 3S1DA 1FFUC 2W54A 3NS1B 3B9JB 5FXDA 1ZR6A 5FXEA 4BCAA 1W1KA 5I1VA 4O95A 2YVSA 1FFVC 2UUUA 2NQWA 1I19A 4DNSA 1N5WC 3RJ8A 5AE1A 2VFUA 3D2DA 2BVHA 3LLBA 1E8GA 2Y3SA 3AM9A 2AXRA 4MLAA 1QLUA 5AE2A 3S1EA 3W8XA 2P13A 3C0PA 2RK5A 3S1CA 4PVEA 1W1MA 3HSUA 3FW9A 1WYGA 2VFSA 5L6FA 4PVJA 3FWAA 3PQBA 3D2HA 3TX1A 2VFVA 1UXYA 1QLTA 3AN1A 1E8FA 5HMRA 1MBBA 3NRZB 3NVZB 2R2ZA 1WVEA 1SB3B 5ADZA 3DQ0A 2GQTA 5G5HB 5HQXA 4BBYA 3DEDA 3NVWB 2W3SA 3FW8A 3NVVB 2Y3RA 3POPA 4XLOA 1W1QA 2Y4GA 3TSHA 2IPIA 3RJAA 1F0XA 1W1RA 1W1SA 5L6GA 1AHZA 4PZFA 1N5XA 1E0YA 5FXPA 3EJEB 3ETRB 3EUB3 3KJMA 4UD8A 2UUVA 4OALA 1AHUA 1HSKA 3I99A 3VTEA 1DZNA 2EXRA 3S1FA 3HRDC 1WVFA 1AHVA 5AE3A 4BC9A 1JROA 2VFRA 2W3RA 3TSJA 3PM9A 4PWBA 5D79A 1FIQB 1N62C 3LAEA 2I0KA 3JS8A 3D2JA 2OAIA 1W1JA 3EJBB 1JRPA 2BVGA 2PLSA 2Q85A 4PVHA 4BC7A 3W8WA 2WDWA 1RM6B 5K8EA 4JB1A 1E8HA 1W1OA 1N63C 4ZOHB 3BW7A 3FW7A 2O3GA 4PVKA 5G5GB
chains in the Genus database with same CATH topology
1FO4A 4ML8A 2P3HA 2Y08A 2QKNA 1W1LA 1T3QC 2Q4WA 3AMZA 2W55A 1VAOA 4EC3A 1DIQA 2PLIA 4PYTA 5I1WA 2MBRA 4JAYA 2GQUA 2VFTA 3W8ZA 1N60C 1DIIA 1V97A 1MBTA 3GSYA 4PWCA 4HG0A 2BVFA 2E3TA 2R8DA 1N61C 5AWVA 2QPMA 2VAOA 5FXFA 3NVYB 2P4PA 1ZXIC 3SR6B 5HHZA 1VDVA 3S1DA 1FFUC 2W54A 3NS1B 3B9JB 5FXDA 1ZR6A 5FXEA 4BCAA 1W1KA 5I1VA 4O95A 2YVSA 1FFVC 2UUUA 2NQWA 1I19A 4DNSA 1N5WC 3RJ8A 5AE1A 2VFUA 3D2DA 2BVHA 3LLBA 1E8GA 2Y3SA 3AM9A 2AXRA 4MLAA 1QLUA 5AE2A 3S1EA 3W8XA 2P13A 3C0PA 2RK5A 3S1CA 4PVEA 1W1MA 3HSUA 3FW9A 1WYGA 2VFSA 5L6FA 4PVJA 3FWAA 3PQBA 3D2HA 3TX1A 2VFVA 1UXYA 1QLTA 3AN1A 1E8FA 5HMRA 1MBBA 3NRZB 3NVZB 2R2ZA 1WVEA 1SB3B 5ADZA 3DQ0A 2GQTA 5G5HB 5HQXA 4BBYA 3DEDA 3NVWB 2W3SA 3FW8A 2Y3RA 3NVVB 3POPA 4XLOA 1W1QA 2Y4GA 3TSHA 2IPIA 3RJAA 1F0XA 1W1RA 1W1SA 5L6GA 1AHZA 4PZFA 1N5XA 1E0YA 5FXPA 3ETRB 4UD8A 3EUB3 3KJMA 2UUVA 4OALA 1AHUA 1HSKA 3I99A 3VTEA 1DZNA 2EXRA 3S1FA 3HRDC 1WVFA 1AHVA 5AE3A 4BC9A 1JROA 2VFRA 2W3RA 3TSJA 3PM9A 4PWBA 5D79A 1FIQB 1N62C 3LAEA 2I0KA 3JS8A 3D2JA 2OAIA 1W1JA 1JRPA 2BVGA 2PLSA 2Q85A 4PVHA 4BC7A 3W8WA 2WDWA 1RM6B 5K8EA 4JB1A 1E8HA 1W1OA 1N63C 4ZOHB 3BW7A 3FW7A 2O3GA 4PVKA 5G5GB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FO4 A;  4ML8 A;  2P3H A;  2QKN A;  1W1L A;  1T3Q C;  2Q4W A;  3AMZ A;  2W55 A;  1VAO A;  4EC3 A;  1DIQ A;  2PLI A;  4PYT A;  2MBR A;  4JAY A;  2GQU A;  2VFT A;  3W8Z A;  1N60 C;  1DII A;  1V97 A;  1MBT A;  3GSY A;  4PWC A;  4HG0 A;  2BVF A;  2E3T A;  2R8D A;  1N61 C;  2QPM A;  2VAO A;  5FXF A;  3NVY B;  2P4P A;  1ZXI C;  3SR6 B;  5HHZ A;  1VDV A;  3S1D A;  1FFU C;  2W54 A;  3NS1 B;  3B9J B;  5FXD A;  1ZR6 A;  5FXE A;  4BCA A;  1W1K A;  4O95 A;  2YVS A;  1FFV C;  2NQW A;  1I19 A;  4DNS A;  1N5W C;  5AE1 A;  2VFU A;  3D2D A;  2BVH A;  3LLB A;  1E8G A;  3AM9 A;  2AXR A;  4MLA A;  1QLU A;  5AE2 A;  3S1E A;  3W8X A;  2P13 A;  3C0P A;  2RK5 A;  3S1C A;  4PVE A;  1W1M A;  3FW9 A;  1WYG A;  2VFS A;  4PVJ A;  3FWA A;  3D2H A;  3TX1 A;  2VFV A;  1UXY A;  1QLT A;  3AN1 A;  1E8F A;  5HMR A;  1MBB A;  3NRZ B;  3NVZ B;  2R2Z A;  1WVE A;  1SB3 B;  5ADZ A;  3DQ0 A;  2GQT A;  5G5H B;  5HQX A;  4BBY A;  3DED A;  3NVW B;  2W3S A;  3FW8 A;  3NVV B;  4XLO A;  1W1Q A;  3TSH A;  1F0X A;  1W1R A;  1W1S A;  1AHZ A;  4PZF A;  1N5X A;  1E0Y A;  5FXP A;  3ETR B;  4UD8 A;  3EUB 3;  3KJM A;  4OAL A;  1AHU A;  1HSK A;  3I99 A;  3VTE A;  1DZN A;  2EXR A;  3S1F A;  3HRD C;  1WVF A;  1AHV A;  5AE3 A;  4BC9 A;  1JRO A;  2VFR A;  2W3R A;  3TSJ A;  3PM9 A;  4PWB A;  5D79 A;  1FIQ B;  1N62 C;  3LAE A;  2I0K A;  3JS8 A;  3D2J A;  2OAI A;  1W1J A;  1JRP A;  2BVG A;  2PLS A;  2Q85 A;  4PVH A;  4BC7 A;  3W8W A;  1RM6 B;  4JB1 A;  1E8H A;  1W1O A;  1N63 C;  4ZOH B;  3BW7 A;  3FW7 A;  2O3G A;  4PVK A;  5G5G B; 
#chains in the Genus database with same CATH topology
 1FO4 A;  4ML8 A;  2P3H A;  2Y08 A;  2QKN A;  1W1L A;  1T3Q C;  2Q4W A;  3AMZ A;  2W55 A;  3EJD B;  1VAO A;  4EC3 A;  1DIQ A;  2PLI A;  4PYT A;  5I1W A;  2MBR A;  4JAY A;  2GQU A;  2VFT A;  3W8Z A;  1N60 C;  1DII A;  1V97 A;  1MBT A;  3GSY A;  4PWC A;  4HG0 A;  2BVF A;  2E3T A;  2R8D A;  1N61 C;  5AWV A;  2QPM A;  2VAO A;  5FXF A;  3NVY B;  2P4P A;  1ZXI C;  3SR6 B;  5HHZ A;  1VDV A;  3S1D A;  1FFU C;  2W54 A;  3NS1 B;  3B9J B;  5FXD A;  1ZR6 A;  5FXE A;  4BCA A;  1W1K A;  5I1V A;  4O95 A;  2YVS A;  1FFV C;  2UUU A;  2NQW A;  1I19 A;  4DNS A;  1N5W C;  3RJ8 A;  5AE1 A;  2VFU A;  3D2D A;  2BVH A;  3LLB A;  1E8G A;  2Y3S A;  3AM9 A;  2AXR A;  4MLA A;  1QLU A;  5AE2 A;  3S1E A;  3W8X A;  2P13 A;  3C0P A;  2RK5 A;  3S1C A;  4PVE A;  1W1M A;  3HSU A;  3FW9 A;  1WYG A;  2VFS A;  5L6F A;  4PVJ A;  3FWA A;  3PQB A;  3D2H A;  3TX1 A;  2VFV A;  1UXY A;  1QLT A;  3AN1 A;  1E8F A;  5HMR A;  1MBB A;  3NRZ B;  3NVZ B;  2R2Z A;  1WVE A;  1SB3 B;  5ADZ A;  3DQ0 A;  2GQT A;  5G5H B;  5HQX A;  4BBY A;  3DED A;  3NVW B;  2W3S A;  3FW8 A;  3NVV B;  2Y3R A;  3POP A;  4XLO A;  1W1Q A;  2Y4G A;  3TSH A;  2IPI A;  3RJA A;  1F0X A;  1W1R A;  1W1S A;  5L6G A;  1AHZ A;  4PZF A;  1N5X A;  1E0Y A;  5FXP A;  3EJE B;  3ETR B;  3EUB 3;  3KJM A;  4UD8 A;  2UUV A;  4OAL A;  1AHU A;  1HSK A;  3I99 A;  3VTE A;  1DZN A;  2EXR A;  3S1F A;  3HRD C;  1WVF A;  1AHV A;  5AE3 A;  4BC9 A;  1JRO A;  2VFR A;  2W3R A;  3TSJ A;  3PM9 A;  4PWB A;  5D79 A;  1FIQ B;  1N62 C;  3LAE A;  2I0K A;  3JS8 A;  3D2J A;  2OAI A;  1W1J A;  3EJB B;  1JRP A;  2BVG A;  2PLS A;  2Q85 A;  4PVH A;  4BC7 A;  3W8W A;  2WDW A;  1RM6 B;  5K8E A;  4JB1 A;  1E8H A;  1W1O A;  1N63 C;  4ZOH B;  3BW7 A;  3FW7 A;  2O3G A;  4PVK A;  5G5G B; 
#chains in the Genus database with same CATH homology
 1FO4 A;  4ML8 A;  2P3H A;  2Y08 A;  2QKN A;  1W1L A;  1T3Q C;  2Q4W A;  3AMZ A;  2W55 A;  1VAO A;  4EC3 A;  1DIQ A;  2PLI A;  4PYT A;  5I1W A;  2MBR A;  4JAY A;  2GQU A;  2VFT A;  3W8Z A;  1N60 C;  1DII A;  1V97 A;  1MBT A;  3GSY A;  4PWC A;  4HG0 A;  2BVF A;  2E3T A;  2R8D A;  1N61 C;  5AWV A;  2QPM A;  2VAO A;  5FXF A;  3NVY B;  2P4P A;  1ZXI C;  3SR6 B;  5HHZ A;  1VDV A;  3S1D A;  1FFU C;  2W54 A;  3NS1 B;  3B9J B;  5FXD A;  1ZR6 A;  5FXE A;  4BCA A;  1W1K A;  5I1V A;  4O95 A;  2YVS A;  1FFV C;  2UUU A;  2NQW A;  1I19 A;  4DNS A;  1N5W C;  3RJ8 A;  5AE1 A;  2VFU A;  3D2D A;  2BVH A;  3LLB A;  1E8G A;  2Y3S A;  3AM9 A;  2AXR A;  4MLA A;  1QLU A;  5AE2 A;  3S1E A;  3W8X A;  2P13 A;  3C0P A;  2RK5 A;  3S1C A;  4PVE A;  1W1M A;  3HSU A;  3FW9 A;  1WYG A;  2VFS A;  5L6F A;  4PVJ A;  3FWA A;  3PQB A;  3D2H A;  3TX1 A;  2VFV A;  1UXY A;  1QLT A;  3AN1 A;  1E8F A;  5HMR A;  1MBB A;  3NRZ B;  3NVZ B;  2R2Z A;  1WVE A;  1SB3 B;  5ADZ A;  3DQ0 A;  2GQT A;  5G5H B;  5HQX A;  4BBY A;  3DED A;  3NVW B;  2W3S A;  3FW8 A;  2Y3R A;  3NVV B;  3POP A;  4XLO A;  1W1Q A;  2Y4G A;  3TSH A;  2IPI A;  3RJA A;  1F0X A;  1W1R A;  1W1S A;  5L6G A;  1AHZ A;  4PZF A;  1N5X A;  1E0Y A;  5FXP A;  3ETR B;  4UD8 A;  3EUB 3;  3KJM A;  2UUV A;  4OAL A;  1AHU A;  1HSK A;  3I99 A;  3VTE A;  1DZN A;  2EXR A;  3S1F A;  3HRD C;  1WVF A;  1AHV A;  5AE3 A;  4BC9 A;  1JRO A;  2VFR A;  2W3R A;  3TSJ A;  3PM9 A;  4PWB A;  5D79 A;  1FIQ B;  1N62 C;  3LAE A;  2I0K A;  3JS8 A;  3D2J A;  2OAI A;  1W1J A;  1JRP A;  2BVG A;  2PLS A;  2Q85 A;  4PVH A;  4BC7 A;  3W8W A;  2WDW A;  1RM6 B;  5K8E A;  4JB1 A;  1E8H A;  1W1O A;  1N63 C;  4ZOH B;  3BW7 A;  3FW7 A;  2O3G A;  4PVK A;  5G5G B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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