1E8FA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form
Total Genus 176
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
555
structure length
545
Chain Sequence
b'EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
total genus 176
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8fA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8fA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8fA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8fA03
3D2HA 2NQWA 1ZXIC 5AE2A 1F0XA 5HMRA 2YVSA 4PWBA 5AE1A 3JS8A 4DNSA 4PVHA 1V97A 1AHZA 1N60C 3NRZB 2I0KA 3D2JA 3AMZA 5AE3A 2PLIA 2EXRA 4PVEA 1UXYA 3TSHA 3VTEA 5HHZA 4MLAA 1VAOA 5FXPA 2QPMA 3FW7A 1RM6B 3W8XA 2W54A 2GQUA 4PVKA 5G5HB 4HG0A 1QLTA 4JAYA 2GQTA 2W3SA 3AN1A 1AHUA 1N61C 3S1DA 3ETRB 1W1QA 3SR6B 3W8ZA 1WVFA 1E0YA 1JROA 3EUB3 3AM9A 2P13A 4ZOHB 1N5XA 2VFSA 1N5WC 4BC9A 3NVYB 1HSKA 4PYTA 4BCAA 3FW9A 5FXFA 1VDVA 3BW7A 5HQXA 3TX1A 2QKNA 2W3RA 2BVHA 1E8HA 5G5GB 2RK5A 1W1KA 2AXRA 3TSJA 1N63C 4EC3A 3C0PA 2PLSA 1N62C 2Q4WA 1DIQA 4XLOA 4OALA 1FFUC 1WVEA 2W55A 1JRPA 3W8WA 3B9JB 1QLUA 1E8GA 2Q85A 1W1RA 1W1LA 3FWAA 4UD8A 3NVZB 1DIIA 3FW8A 4O95A 2OAIA 1DZNA 2R2ZA 1I19A 1FIQB 3S1CA 3S1FA 4BBYA 2BVFA 2VFRA 2VFVA 4ML8A 1MBTA 2R8DA 3S1EA 3NVWB 1W1OA 3I99A 3D2DA 2VAOA 1T3QC 4BC7A 1MBBA 1ZR6A 1WYGA 1FFVC 3DQ0A 5D79A 3DEDA 3NVVB 3GSYA 1FO4A 2BVGA 3LAEA 5FXDA 3NS1B 1E8FA 4PWCA 4JB1A 1W1SA 2MBRA 1W1JA 3KJMA 2VFUA 2O3GA 4PVJA 1SB3B 3PM9A 3LLBA 5ADZA 2VFTA 2P4PA 2P3HA 1W1MA 5FXEA 4PZFA 1AHVA 2E3TA 3HRDC
chains in the Genus database with same CATH superfamily
3D2HA 2NQWA 1ZXIC 5AE2A 1F0XA 5HMRA 2YVSA 4PWBA 5AE1A 3JS8A 4DNSA 4PVHA 1V97A 1AHZA 1N60C 3NRZB 2I0KA 3D2JA 3AMZA 5AE3A 2PLIA 2EXRA 4PVEA 1UXYA 3TSHA 3VTEA 5HHZA 4MLAA 5AWVA 1VAOA 5FXPA 2IPIA 2QPMA 3FW7A 1RM6B 3W8XA 2W54A 2GQUA 5L6FA 4PVKA 3POPA 5G5HB 4HG0A 1QLTA 4JAYA 2GQTA 2W3SA 3AN1A 1AHUA 1N61C 3S1DA 3ETRB 1W1QA 3SR6B 3W8ZA 1WVFA 1E0YA 1JROA 3EUB3 3AM9A 2P13A 2WDWA 4ZOHB 1N5XA 2VFSA 3EJDB 1N5WC 4BC9A 3NVYB 2Y08A 1HSKA 4PYTA 4BCAA 3FW9A 5FXFA 1VDVA 5I1WA 3BW7A 5HQXA 3TX1A 2QKNA 2W3RA 2BVHA 1E8HA 5G5GB 2RK5A 2Y4GA 1W1KA 2AXRA 3TSJA 1N63C 4EC3A 3C0PA 3HSUA 2PLSA 3PQBA 1N62C 2Q4WA 1DIQA 4XLOA 4OALA 1FFUC 1WVEA 2W55A 1JRPA 3W8WA 3B9JB 1QLUA 1E8GA 2Q85A 1W1RA 1W1LA 3FWAA 4UD8A 3NVZB 1DIIA 3FW8A 4O95A 2OAIA 1DZNA 2R2ZA 1I19A 1FIQB 2Y3RA 3S1CA 5L6GA 3S1FA 4BBYA 2Y3SA 2BVFA 2VFRA 2VFVA 4ML8A 3RJ8A 1MBTA 2R8DA 3S1EA 3NVWB 1W1OA 3I99A 3D2DA 2VAOA 1T3QC 4BC7A 1MBBA 1ZR6A 1WYGA 1FFVC 3DQ0A 3RJAA 5D79A 2UUUA 3DEDA 3NVVB 3GSYA 1FO4A 2BVGA 3EJEB 3LAEA 5FXDA 3NS1B 5I1VA 1E8FA 2UUVA 4PWCA 5K8EA 4JB1A 1W1SA 2MBRA 1W1JA 3KJMA 2VFUA 2O3GA 4PVJA 1SB3B 3PM9A 3EJBB 3LLBA 5ADZA 2VFTA 2P4PA 2P3HA 1W1MA 5FXEA 4PZFA 1AHVA 2E3TA 3HRDC
chains in the Genus database with same CATH topology
3D2HA 2NQWA 1ZXIC 5AE2A 1F0XA 5HMRA 2YVSA 4PWBA 5AE1A 3JS8A 4DNSA 4PVHA 1V97A 1AHZA 1N60C 3NRZB 2I0KA 3D2JA 3AMZA 5AE3A 2PLIA 2EXRA 4PVEA 1UXYA 3TSHA 3VTEA 5HHZA 4MLAA 5AWVA 1VAOA 5FXPA 2IPIA 2QPMA 3FW7A 1RM6B 3W8XA 2W54A 2GQUA 5L6FA 4PVKA 3POPA 5G5HB 4HG0A 1QLTA 4JAYA 2GQTA 2W3SA 3AN1A 1AHUA 1N61C 3S1DA 3ETRB 1W1QA 3SR6B 3W8ZA 1WVFA 1E0YA 1JROA 3EUB3 3AM9A 2P13A 2WDWA 4ZOHB 1N5XA 2VFSA 1N5WC 4BC9A 2Y08A 3NVYB 1HSKA 4PYTA 4BCAA 3FW9A 5FXFA 1VDVA 5I1WA 3BW7A 5HQXA 3TX1A 2QKNA 2W3RA 2BVHA 1E8HA 5G5GB 2RK5A 2Y4GA 1W1KA 2AXRA 3TSJA 1N63C 4EC3A 3C0PA 3HSUA 2PLSA 3PQBA 1N62C 2Q4WA 1DIQA 4XLOA 4OALA 1FFUC 1WVEA 2W55A 1JRPA 3W8WA 3B9JB 1QLUA 1E8GA 2Q85A 1W1RA 1W1LA 3FWAA 4UD8A 3NVZB 1DIIA 3FW8A 4O95A 2OAIA 1DZNA 2R2ZA 1I19A 1FIQB 2Y3RA 3S1CA 5L6GA 3S1FA 4BBYA 2Y3SA 2BVFA 2VFRA 2VFVA 4ML8A 3RJ8A 1MBTA 2R8DA 3S1EA 3NVWB 1W1OA 3I99A 3D2DA 2VAOA 1T3QC 4BC7A 1MBBA 1ZR6A 1WYGA 1FFVC 3DQ0A 3RJAA 5D79A 2UUUA 3DEDA 3NVVB 3GSYA 1FO4A 2BVGA 3LAEA 5FXDA 3NS1B 5I1VA 1E8FA 2UUVA 4PWCA 5K8EA 4JB1A 1W1SA 2MBRA 1W1JA 3KJMA 2VFUA 2O3GA 4PVJA 1SB3B 3PM9A 3LLBA 5ADZA 2VFTA 2P4PA 2P3HA 1W1MA 5FXEA 4PZFA 1AHVA 2E3TA 3HRDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D2H A;  2NQW A;  1ZXI C;  5AE2 A;  1F0X A;  5HMR A;  2YVS A;  4PWB A;  5AE1 A;  3JS8 A;  4DNS A;  4PVH A;  1V97 A;  1AHZ A;  1N60 C;  3NRZ B;  2I0K A;  3D2J A;  3AMZ A;  5AE3 A;  2PLI A;  2EXR A;  4PVE A;  1UXY A;  3TSH A;  3VTE A;  5HHZ A;  4MLA A;  1VAO A;  5FXP A;  2QPM A;  3FW7 A;  1RM6 B;  3W8X A;  2W54 A;  2GQU A;  4PVK A;  5G5H B;  4HG0 A;  1QLT A;  4JAY A;  2GQT A;  2W3S A;  3AN1 A;  1AHU A;  1N61 C;  3S1D A;  3ETR B;  1W1Q A;  3SR6 B;  3W8Z A;  1WVF A;  1E0Y A;  1JRO A;  3EUB 3;  3AM9 A;  2P13 A;  4ZOH B;  1N5X A;  2VFS A;  1N5W C;  4BC9 A;  3NVY B;  1HSK A;  4PYT A;  4BCA A;  3FW9 A;  5FXF A;  1VDV A;  3BW7 A;  5HQX A;  3TX1 A;  2QKN A;  2W3R A;  2BVH A;  1E8H A;  5G5G B;  2RK5 A;  1W1K A;  2AXR A;  3TSJ A;  1N63 C;  4EC3 A;  3C0P A;  2PLS A;  1N62 C;  2Q4W A;  1DIQ A;  4XLO A;  4OAL A;  1FFU C;  1WVE A;  2W55 A;  1JRP A;  3W8W A;  3B9J B;  1QLU A;  1E8G A;  2Q85 A;  1W1R A;  1W1L A;  3FWA A;  4UD8 A;  3NVZ B;  1DII A;  3FW8 A;  4O95 A;  2OAI A;  1DZN A;  2R2Z A;  1I19 A;  1FIQ B;  3S1C A;  3S1F A;  4BBY A;  2BVF A;  2VFR A;  2VFV A;  4ML8 A;  1MBT A;  2R8D A;  3S1E A;  3NVW B;  1W1O A;  3I99 A;  3D2D A;  2VAO A;  1T3Q C;  4BC7 A;  1MBB A;  1ZR6 A;  1WYG A;  1FFV C;  3DQ0 A;  5D79 A;  3DED A;  3NVV B;  3GSY A;  1FO4 A;  2BVG A;  3LAE A;  5FXD A;  3NS1 B;  1E8F A;  4PWC A;  4JB1 A;  1W1S A;  2MBR A;  1W1J A;  3KJM A;  2VFU A;  2O3G A;  4PVJ A;  1SB3 B;  3PM9 A;  3LLB A;  5ADZ A;  2VFT A;  2P4P A;  2P3H A;  1W1M A;  5FXE A;  4PZF A;  1AHV A;  2E3T A;  3HRD C; 
#chains in the Genus database with same CATH topology
 3D2H A;  2NQW A;  1ZXI C;  5AE2 A;  1F0X A;  5HMR A;  2YVS A;  4PWB A;  5AE1 A;  3JS8 A;  4DNS A;  4PVH A;  1V97 A;  1AHZ A;  1N60 C;  3NRZ B;  2I0K A;  3D2J A;  3AMZ A;  5AE3 A;  2PLI A;  2EXR A;  4PVE A;  1UXY A;  3TSH A;  3VTE A;  5HHZ A;  4MLA A;  5AWV A;  1VAO A;  5FXP A;  2IPI A;  2QPM A;  3FW7 A;  1RM6 B;  3W8X A;  2W54 A;  2GQU A;  5L6F A;  4PVK A;  3POP A;  5G5H B;  4HG0 A;  1QLT A;  4JAY A;  2GQT A;  2W3S A;  3AN1 A;  1AHU A;  1N61 C;  3S1D A;  3ETR B;  1W1Q A;  3SR6 B;  3W8Z A;  1WVF A;  1E0Y A;  1JRO A;  3EUB 3;  3AM9 A;  2P13 A;  2WDW A;  4ZOH B;  1N5X A;  2VFS A;  3EJD B;  1N5W C;  4BC9 A;  3NVY B;  2Y08 A;  1HSK A;  4PYT A;  4BCA A;  3FW9 A;  5FXF A;  1VDV A;  5I1W A;  3BW7 A;  5HQX A;  3TX1 A;  2QKN A;  2W3R A;  2BVH A;  1E8H A;  5G5G B;  2RK5 A;  2Y4G A;  1W1K A;  2AXR A;  3TSJ A;  1N63 C;  4EC3 A;  3C0P A;  3HSU A;  2PLS A;  3PQB A;  1N62 C;  2Q4W A;  1DIQ A;  4XLO A;  4OAL A;  1FFU C;  1WVE A;  2W55 A;  1JRP A;  3W8W A;  3B9J B;  1QLU A;  1E8G A;  2Q85 A;  1W1R A;  1W1L A;  3FWA A;  4UD8 A;  3NVZ B;  1DII A;  3FW8 A;  4O95 A;  2OAI A;  1DZN A;  2R2Z A;  1I19 A;  1FIQ B;  2Y3R A;  3S1C A;  5L6G A;  3S1F A;  4BBY A;  2Y3S A;  2BVF A;  2VFR A;  2VFV A;  4ML8 A;  3RJ8 A;  1MBT A;  2R8D A;  3S1E A;  3NVW B;  1W1O A;  3I99 A;  3D2D A;  2VAO A;  1T3Q C;  4BC7 A;  1MBB A;  1ZR6 A;  1WYG A;  1FFV C;  3DQ0 A;  3RJA A;  5D79 A;  2UUU A;  3DED A;  3NVV B;  3GSY A;  1FO4 A;  2BVG A;  3EJE B;  3LAE A;  5FXD A;  3NS1 B;  5I1V A;  1E8F A;  2UUV A;  4PWC A;  5K8E A;  4JB1 A;  1W1S A;  2MBR A;  1W1J A;  3KJM A;  2VFU A;  2O3G A;  4PVJ A;  1SB3 B;  3PM9 A;  3EJB B;  3LLB A;  5ADZ A;  2VFT A;  2P4P A;  2P3H A;  1W1M A;  5FXE A;  4PZF A;  1AHV A;  2E3T A;  3HRD C; 
#chains in the Genus database with same CATH homology
 3D2H A;  2NQW A;  1ZXI C;  5AE2 A;  1F0X A;  5HMR A;  2YVS A;  4PWB A;  5AE1 A;  3JS8 A;  4DNS A;  4PVH A;  1V97 A;  1AHZ A;  1N60 C;  3NRZ B;  2I0K A;  3D2J A;  3AMZ A;  5AE3 A;  2PLI A;  2EXR A;  4PVE A;  1UXY A;  3TSH A;  3VTE A;  5HHZ A;  4MLA A;  5AWV A;  1VAO A;  5FXP A;  2IPI A;  2QPM A;  3FW7 A;  1RM6 B;  3W8X A;  2W54 A;  2GQU A;  5L6F A;  4PVK A;  3POP A;  5G5H B;  4HG0 A;  1QLT A;  4JAY A;  2GQT A;  2W3S A;  3AN1 A;  1AHU A;  1N61 C;  3S1D A;  3ETR B;  1W1Q A;  3SR6 B;  3W8Z A;  1WVF A;  1E0Y A;  1JRO A;  3EUB 3;  3AM9 A;  2P13 A;  2WDW A;  4ZOH B;  1N5X A;  2VFS A;  1N5W C;  4BC9 A;  2Y08 A;  3NVY B;  1HSK A;  4PYT A;  4BCA A;  3FW9 A;  5FXF A;  1VDV A;  5I1W A;  3BW7 A;  5HQX A;  3TX1 A;  2QKN A;  2W3R A;  2BVH A;  1E8H A;  5G5G B;  2RK5 A;  2Y4G A;  1W1K A;  2AXR A;  3TSJ A;  1N63 C;  4EC3 A;  3C0P A;  3HSU A;  2PLS A;  3PQB A;  1N62 C;  2Q4W A;  1DIQ A;  4XLO A;  4OAL A;  1FFU C;  1WVE A;  2W55 A;  1JRP A;  3W8W A;  3B9J B;  1QLU A;  1E8G A;  2Q85 A;  1W1R A;  1W1L A;  3FWA A;  4UD8 A;  3NVZ B;  1DII A;  3FW8 A;  4O95 A;  2OAI A;  1DZN A;  2R2Z A;  1I19 A;  1FIQ B;  2Y3R A;  3S1C A;  5L6G A;  3S1F A;  4BBY A;  2Y3S A;  2BVF A;  2VFR A;  2VFV A;  4ML8 A;  3RJ8 A;  1MBT A;  2R8D A;  3S1E A;  3NVW B;  1W1O A;  3I99 A;  3D2D A;  2VAO A;  1T3Q C;  4BC7 A;  1MBB A;  1ZR6 A;  1WYG A;  1FFV C;  3DQ0 A;  3RJA A;  5D79 A;  2UUU A;  3DED A;  3NVV B;  3GSY A;  1FO4 A;  2BVG A;  3LAE A;  5FXD A;  3NS1 B;  5I1V A;  1E8F A;  2UUV A;  4PWC A;  5K8E A;  4JB1 A;  1W1S A;  2MBR A;  1W1J A;  3KJM A;  2VFU A;  2O3G A;  4PVJ A;  1SB3 B;  3PM9 A;  3LLB A;  5ADZ A;  2VFT A;  2P4P A;  2P3H A;  1W1M A;  5FXE A;  4PZF A;  1AHV A;  2E3T A;  3HRD C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...