1E8FA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 176
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8fA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8fA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8fA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8fA03
3I99A 5HMRA 2VFVA 1WVFA 2QKNA 3C0PA 1V97A 4UD8A 1FFUC 5G5GB 3GSYA 1QLUA 4PWCA 4PVEA 4MLAA 5G5HB 2O3GA 5FXEA 2W3SA 1VDVA 2MBRA 3KJMA 5HHZA 4BC9A 3LAEA 3FWAA 2P3HA 3NRZB 1ZXIC 3DEDA 2BVFA 4DNSA 4XLOA 3S1CA 1JRPA 2VFTA 2E3TA 2W54A 1W1MA 3DQ0A 3NVYB 3TX1A 1W1QA 1DIQA 2R8DA 3D2JA 2Q85A 4PWBA 3BW7A 4HG0A 2AXRA 5FXFA 1JROA 1UXYA 1SB3B 4OALA 4PVKA 3HRDC 4BBYA 1W1OA 2YVSA 2OAIA 3AN1A 2BVGA 4O95A 3FW8A 2GQUA 4ZOHB 1E8FA 3TSHA 3AMZA 3S1EA 3W8XA 3B9JB 3NVVB 5ADZA 3D2DA 2VFUA 2P4PA 2QPMA 3NVWB 5D79A 3FW7A 1HSKA 1I19A 1DIIA 1N62C 1ZR6A 1DZNA 2W3RA 4PVHA 1AHUA 5AE3A 1N5XA 1QLTA 2VFRA 2VAOA 1F0XA 5AE2A 4ML8A 3VTEA 1W1JA 3JS8A 3SR6B 1WYGA 1AHVA 2PLSA 1FO4A 3ETRB 3D2HA 1RM6B 3EUB3 1N5WC 4JB1A 1N63C 1FFVC 2Q4WA 2PLIA 1AHZA 3FW9A 4JAYA 2W55A 2RK5A 1MBTA 3S1DA 5HQXA 4EC3A 3PM9A 1W1RA 1N60C 5AE1A 1N61C 2I0KA 3AM9A 3TSJA 1W1KA 4BC7A 1VAOA 5FXDA 4PYTA 3W8WA 2P13A 2VFSA 1E8GA 1FIQB 3LLBA 2GQTA 4BCAA 3NS1B 1T3QC 1E0YA 1W1SA 2BVHA 3W8ZA 5FXPA 4PVJA 2R2ZA 1WVEA 1MBBA 4PZFA 3NVZB 2EXRA 1W1LA 3S1FA 1E8HA 2NQWA
chains in the Genus database with same CATH superfamily
3I99A 5HMRA 2VFVA 2Y3RA 1WVFA 2QKNA 3C0PA 1V97A 4UD8A 1FFUC 5G5GB 3GSYA 1QLUA 4PWCA 4PVEA 4MLAA 5G5HB 2O3GA 5FXEA 2W3SA 5K8EA 1VDVA 2MBRA 3KJMA 5HHZA 4BC9A 3LAEA 3FWAA 2P3HA 3NRZB 1ZXIC 3DEDA 2BVFA 4DNSA 4XLOA 3S1CA 1JRPA 2VFTA 2E3TA 2W54A 1W1MA 3DQ0A 3NVYB 3TX1A 1W1QA 1DIQA 2R8DA 3D2JA 5L6GA 2Q85A 2WDWA 3EJDB 4PWBA 3BW7A 4HG0A 2AXRA 5FXFA 1JROA 1UXYA 1SB3B 4OALA 4PVKA 3HRDC 4BBYA 1W1OA 2YVSA 2IPIA 2OAIA 3AN1A 2BVGA 4O95A 3FW8A 2GQUA 4ZOHB 1E8FA 3EJEB 3TSHA 3AMZA 3S1EA 3W8XA 3B9JB 3NVVB 3HSUA 5ADZA 3D2DA 2VFUA 5I1VA 2P4PA 2QPMA 3NVWB 5D79A 3FW7A 1HSKA 3RJAA 1I19A 1DIIA 1N62C 1ZR6A 3RJ8A 2Y3SA 3POPA 1DZNA 2W3RA 4PVHA 1AHUA 5AE3A 1N5XA 1QLTA 2VFRA 2VAOA 1F0XA 5AE2A 4ML8A 3VTEA 1W1JA 3JS8A 2UUVA 2Y4GA 3SR6B 1WYGA 1AHVA 2PLSA 2UUUA 1FO4A 3ETRB 5AWVA 3D2HA 1RM6B 3EUB3 1N5WC 4JB1A 1N63C 1FFVC 2Q4WA 2PLIA 1AHZA 3FW9A 4JAYA 2W55A 2RK5A 1MBTA 3S1DA 5HQXA 4EC3A 3PM9A 1W1RA 1N60C 5AE1A 3PQBA 1N61C 2I0KA 3AM9A 3TSJA 1W1KA 4BC7A 1VAOA 5FXDA 4PYTA 3W8WA 2Y08A 2P13A 2VFSA 3EJBB 1E8GA 1FIQB 3LLBA 2GQTA 4BCAA 5I1WA 3NS1B 1T3QC 1E0YA 1W1SA 2BVHA 3W8ZA 5L6FA 5FXPA 4PVJA 2R2ZA 1WVEA 1MBBA 4PZFA 3NVZB 2EXRA 1W1LA 3S1FA 1E8HA 2NQWA
chains in the Genus database with same CATH topology
3I99A 5HMRA 2VFVA 2Y3RA 1WVFA 2QKNA 3C0PA 1V97A 4UD8A 1FFUC 5G5GB 3GSYA 1QLUA 4PWCA 4PVEA 4MLAA 5G5HB 2O3GA 5FXEA 2W3SA 5K8EA 1VDVA 2MBRA 3KJMA 5HHZA 4BC9A 3LAEA 3FWAA 2P3HA 3NRZB 1ZXIC 3DEDA 2BVFA 4DNSA 4XLOA 3S1CA 1JRPA 2VFTA 2E3TA 2W54A 1W1MA 3DQ0A 3NVYB 3TX1A 1W1QA 1DIQA 2R8DA 3D2JA 5L6GA 2Q85A 2WDWA 4PWBA 3BW7A 4HG0A 2AXRA 5FXFA 1JROA 1UXYA 1SB3B 4OALA 4PVKA 3HRDC 4BBYA 1W1OA 2YVSA 2IPIA 2OAIA 3AN1A 2BVGA 4O95A 3FW8A 2GQUA 4ZOHB 1E8FA 3TSHA 3AMZA 3S1EA 3W8XA 3B9JB 3HSUA 3NVVB 5ADZA 3D2DA 2VFUA 5I1VA 2P4PA 2QPMA 3NVWB 5D79A 3FW7A 1HSKA 3RJAA 1I19A 1DIIA 1N62C 1ZR6A 3RJ8A 2Y3SA 3POPA 1DZNA 2W3RA 4PVHA 1AHUA 5AE3A 1N5XA 1QLTA 2VFRA 2VAOA 1F0XA 5AE2A 4ML8A 3VTEA 1W1JA 3JS8A 2UUVA 2Y4GA 3SR6B 1WYGA 1AHVA 2PLSA 2UUUA 1FO4A 3ETRB 5AWVA 3D2HA 1RM6B 3EUB3 1N5WC 4JB1A 1N63C 1FFVC 2Q4WA 2PLIA 1AHZA 3FW9A 4JAYA 2W55A 2RK5A 1MBTA 3S1DA 5HQXA 4EC3A 3PM9A 1W1RA 1N60C 5AE1A 3PQBA 1N61C 2I0KA 3AM9A 3TSJA 1W1KA 4BC7A 1VAOA 5FXDA 4PYTA 3W8WA 2Y08A 2P13A 2VFSA 1E8GA 1FIQB 3LLBA 2GQTA 4BCAA 5I1WA 3NS1B 1T3QC 1E0YA 1W1SA 2BVHA 3W8ZA 5L6FA 5FXPA 4PVJA 2R2ZA 1WVEA 1MBBA 4PZFA 3NVZB 2EXRA 1W1LA 3S1FA 1E8HA 2NQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I99 A;  5HMR A;  2VFV A;  1WVF A;  2QKN A;  3C0P A;  1V97 A;  4UD8 A;  1FFU C;  5G5G B;  3GSY A;  1QLU A;  4PWC A;  4PVE A;  4MLA A;  5G5H B;  2O3G A;  5FXE A;  2W3S A;  1VDV A;  2MBR A;  3KJM A;  5HHZ A;  4BC9 A;  3LAE A;  3FWA A;  2P3H A;  3NRZ B;  1ZXI C;  3DED A;  2BVF A;  4DNS A;  4XLO A;  3S1C A;  1JRP A;  2VFT A;  2E3T A;  2W54 A;  1W1M A;  3DQ0 A;  3NVY B;  3TX1 A;  1W1Q A;  1DIQ A;  2R8D A;  3D2J A;  2Q85 A;  4PWB A;  3BW7 A;  4HG0 A;  2AXR A;  5FXF A;  1JRO A;  1UXY A;  1SB3 B;  4OAL A;  4PVK A;  3HRD C;  4BBY A;  1W1O A;  2YVS A;  2OAI A;  3AN1 A;  2BVG A;  4O95 A;  3FW8 A;  2GQU A;  4ZOH B;  1E8F A;  3TSH A;  3AMZ A;  3S1E A;  3W8X A;  3B9J B;  3NVV B;  5ADZ A;  3D2D A;  2VFU A;  2P4P A;  2QPM A;  3NVW B;  5D79 A;  3FW7 A;  1HSK A;  1I19 A;  1DII A;  1N62 C;  1ZR6 A;  1DZN A;  2W3R A;  4PVH A;  1AHU A;  5AE3 A;  1N5X A;  1QLT A;  2VFR A;  2VAO A;  1F0X A;  5AE2 A;  4ML8 A;  3VTE A;  1W1J A;  3JS8 A;  3SR6 B;  1WYG A;  1AHV A;  2PLS A;  1FO4 A;  3ETR B;  3D2H A;  1RM6 B;  3EUB 3;  1N5W C;  4JB1 A;  1N63 C;  1FFV C;  2Q4W A;  2PLI A;  1AHZ A;  3FW9 A;  4JAY A;  2W55 A;  2RK5 A;  1MBT A;  3S1D A;  5HQX A;  4EC3 A;  3PM9 A;  1W1R A;  1N60 C;  5AE1 A;  1N61 C;  2I0K A;  3AM9 A;  3TSJ A;  1W1K A;  4BC7 A;  1VAO A;  5FXD A;  4PYT A;  3W8W A;  2P13 A;  2VFS A;  1E8G A;  1FIQ B;  3LLB A;  2GQT A;  4BCA A;  3NS1 B;  1T3Q C;  1E0Y A;  1W1S A;  2BVH A;  3W8Z A;  5FXP A;  4PVJ A;  2R2Z A;  1WVE A;  1MBB A;  4PZF A;  3NVZ B;  2EXR A;  1W1L A;  3S1F A;  1E8H A;  2NQW A; 
#chains in the Genus database with same CATH topology
 3I99 A;  5HMR A;  2VFV A;  2Y3R A;  1WVF A;  2QKN A;  3C0P A;  1V97 A;  4UD8 A;  1FFU C;  5G5G B;  3GSY A;  1QLU A;  4PWC A;  4PVE A;  4MLA A;  5G5H B;  2O3G A;  5FXE A;  2W3S A;  5K8E A;  1VDV A;  2MBR A;  3KJM A;  5HHZ A;  4BC9 A;  3LAE A;  3FWA A;  2P3H A;  3NRZ B;  1ZXI C;  3DED A;  2BVF A;  4DNS A;  4XLO A;  3S1C A;  1JRP A;  2VFT A;  2E3T A;  2W54 A;  1W1M A;  3DQ0 A;  3NVY B;  3TX1 A;  1W1Q A;  1DIQ A;  2R8D A;  3D2J A;  5L6G A;  2Q85 A;  2WDW A;  3EJD B;  4PWB A;  3BW7 A;  4HG0 A;  2AXR A;  5FXF A;  1JRO A;  1UXY A;  1SB3 B;  4OAL A;  4PVK A;  3HRD C;  4BBY A;  1W1O A;  2YVS A;  2IPI A;  2OAI A;  3AN1 A;  2BVG A;  4O95 A;  3FW8 A;  2GQU A;  4ZOH B;  1E8F A;  3EJE B;  3TSH A;  3AMZ A;  3S1E A;  3W8X A;  3B9J B;  3NVV B;  3HSU A;  5ADZ A;  3D2D A;  2VFU A;  5I1V A;  2P4P A;  2QPM A;  3NVW B;  5D79 A;  3FW7 A;  1HSK A;  3RJA A;  1I19 A;  1DII A;  1N62 C;  1ZR6 A;  3RJ8 A;  2Y3S A;  3POP A;  1DZN A;  2W3R A;  4PVH A;  1AHU A;  5AE3 A;  1N5X A;  1QLT A;  2VFR A;  2VAO A;  1F0X A;  5AE2 A;  4ML8 A;  3VTE A;  1W1J A;  3JS8 A;  2UUV A;  2Y4G A;  3SR6 B;  1WYG A;  1AHV A;  2PLS A;  2UUU A;  1FO4 A;  3ETR B;  5AWV A;  3D2H A;  1RM6 B;  3EUB 3;  1N5W C;  4JB1 A;  1N63 C;  1FFV C;  2Q4W A;  2PLI A;  1AHZ A;  3FW9 A;  4JAY A;  2W55 A;  2RK5 A;  1MBT A;  3S1D A;  5HQX A;  4EC3 A;  3PM9 A;  1W1R A;  1N60 C;  5AE1 A;  3PQB A;  1N61 C;  2I0K A;  3AM9 A;  3TSJ A;  1W1K A;  4BC7 A;  1VAO A;  5FXD A;  4PYT A;  3W8W A;  2Y08 A;  2P13 A;  2VFS A;  3EJB B;  1E8G A;  1FIQ B;  3LLB A;  2GQT A;  4BCA A;  5I1W A;  3NS1 B;  1T3Q C;  1E0Y A;  1W1S A;  2BVH A;  3W8Z A;  5L6F A;  5FXP A;  4PVJ A;  2R2Z A;  1WVE A;  1MBB A;  4PZF A;  3NVZ B;  2EXR A;  1W1L A;  3S1F A;  1E8H A;  2NQW A; 
#chains in the Genus database with same CATH homology
 3I99 A;  5HMR A;  2VFV A;  2Y3R A;  1WVF A;  2QKN A;  3C0P A;  1V97 A;  4UD8 A;  1FFU C;  5G5G B;  3GSY A;  1QLU A;  4PWC A;  4PVE A;  4MLA A;  5G5H B;  2O3G A;  5FXE A;  2W3S A;  5K8E A;  1VDV A;  2MBR A;  3KJM A;  5HHZ A;  4BC9 A;  3LAE A;  3FWA A;  2P3H A;  3NRZ B;  1ZXI C;  3DED A;  2BVF A;  4DNS A;  4XLO A;  3S1C A;  1JRP A;  2VFT A;  2E3T A;  2W54 A;  1W1M A;  3DQ0 A;  3NVY B;  3TX1 A;  1W1Q A;  1DIQ A;  2R8D A;  3D2J A;  5L6G A;  2Q85 A;  2WDW A;  4PWB A;  3BW7 A;  4HG0 A;  2AXR A;  5FXF A;  1JRO A;  1UXY A;  1SB3 B;  4OAL A;  4PVK A;  3HRD C;  4BBY A;  1W1O A;  2YVS A;  2IPI A;  2OAI A;  3AN1 A;  2BVG A;  4O95 A;  3FW8 A;  2GQU A;  4ZOH B;  1E8F A;  3TSH A;  3AMZ A;  3S1E A;  3W8X A;  3B9J B;  3HSU A;  3NVV B;  5ADZ A;  3D2D A;  2VFU A;  5I1V A;  2P4P A;  2QPM A;  3NVW B;  5D79 A;  3FW7 A;  1HSK A;  3RJA A;  1I19 A;  1DII A;  1N62 C;  1ZR6 A;  3RJ8 A;  2Y3S A;  3POP A;  1DZN A;  2W3R A;  4PVH A;  1AHU A;  5AE3 A;  1N5X A;  1QLT A;  2VFR A;  2VAO A;  1F0X A;  5AE2 A;  4ML8 A;  3VTE A;  1W1J A;  3JS8 A;  2UUV A;  2Y4G A;  3SR6 B;  1WYG A;  1AHV A;  2PLS A;  2UUU A;  1FO4 A;  3ETR B;  5AWV A;  3D2H A;  1RM6 B;  3EUB 3;  1N5W C;  4JB1 A;  1N63 C;  1FFV C;  2Q4W A;  2PLI A;  1AHZ A;  3FW9 A;  4JAY A;  2W55 A;  2RK5 A;  1MBT A;  3S1D A;  5HQX A;  4EC3 A;  3PM9 A;  1W1R A;  1N60 C;  5AE1 A;  3PQB A;  1N61 C;  2I0K A;  3AM9 A;  3TSJ A;  1W1K A;  4BC7 A;  1VAO A;  5FXD A;  4PYT A;  3W8W A;  2Y08 A;  2P13 A;  2VFS A;  1E8G A;  1FIQ B;  3LLB A;  2GQT A;  4BCA A;  5I1W A;  3NS1 B;  1T3Q C;  1E0Y A;  1W1S A;  2BVH A;  3W8Z A;  5L6F A;  5FXP A;  4PVJ A;  2R2Z A;  1WVE A;  1MBB A;  4PZF A;  3NVZ B;  2EXR A;  1W1L A;  3S1F A;  1E8H A;  2NQW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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