2AXRA

Crystal structure of glucooligosaccharide oxidase from acremonium strictum: a novel flavinylation of 6-s-cysteinyl, 8alpha-n1-histidyl fad
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
b'EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords glucooligosaccharide oxidase
publication title Crystal Structure of Glucooligosaccharide Oxidase from Acremonium strictum: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8{alpha}-N1-HISTIDYL FAD
pubmed doi rcsb
source organism Acremonium strictum
molecule tags Oxidoreductase
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2axrA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2axrA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2axrA03
1WYGA 4PVJA 2Y3RA 1AHUA 3BW7A 1DZNA 2AXRA 3NVVB 3NVZB 3HRDC 4PVKA 3AMZA 5I1WA 1VDVA 1QLUA 2Y4GA 1E0YA 3PM9A 4BCAA 3JS8A 5FXEA 3S1CA 3DEDA 3EUB3 1N60C 4DNSA 3RJ8A 3VTEA 3HSUA 3S1DA 5ADZA 2W3RA 3W8WA 3POPA 1N5WC 4PWBA 1FO4A 1N63C 3AN1A 4MLAA 4HG0A 2WDWA 5AE2A 2BVFA 1W1OA 2W54A 1V97A 1FFVC 2O3GA 2OAIA 3LAEA 1FFUC 2EXRA 4JB1A 2YVSA 5L6GA 2GQUA 3D2DA 1W1JA 5D79A 2MBRA 2QPMA 1JRPA 1I19A 4O95A 4BC9A 2GQTA 3GSYA 3AM9A 1E8GA 1W1QA 1VAOA 1WVFA 3ETRB 5FXPA 2E3TA 5AWVA 4XLOA 2Q4WA 1FIQB 5HMRA 2PLSA 2R2ZA 2P4PA 2Q85A 3TSJA 3LLBA 2PLIA 1MBTA 4ZOHB 3W8ZA 2R8DA 5G5GB 1WVEA 2RK5A 1N62C 2VFVA 3NS1B 1W1SA 4PVEA 3TX1A 1F0XA 5HQXA 2P13A 5AE1A 4PWCA 1ZR6A 2BVGA 1DIQA 2VAOA 2VFRA 3D2HA 3DQ0A 3NRZB 3TSHA 4PYTA 2NQWA 1SB3B 4BBYA 1DIIA 1T3QC 2VFSA 3RJAA 1MBBA 5I1VA 4PVHA 5G5HB 1AHVA 2P3HA 1AHZA 1JROA 1N5XA 2Y08A 5HHZA 2I0KA 5AE3A 2W55A 1W1MA 4ML8A 5FXDA 1W1LA 2W3SA 4UD8A 5K8EA 3B9JB 1QLTA 4JAYA 3KJMA 3PQBA 3FW7A 3NVWB 3SR6B 3FW8A 1E8HA 4OALA 2Y3SA 1W1RA 2VFTA 1N61C 1UXYA 3FWAA 3I99A 2BVHA 1HSKA 3D2JA 5L6FA 1RM6B 1E8FA 3S1EA 3W8XA 2IPIA 3FW9A 2VFUA 4EC3A 4BC7A 5FXFA 3C0PA 1ZXIC 4PZFA 2QKNA 3NVYB 1W1KA 3S1FA
chains in the Genus database with same CATH superfamily
1WYGA 4PVJA 2Y3RA 1AHUA 3BW7A 1DZNA 3EJDB 2AXRA 3NVVB 3NVZB 3HRDC 4PVKA 3AMZA 5I1WA 1VDVA 1QLUA 2Y4GA 1E0YA 3PM9A 4BCAA 3JS8A 5FXEA 3S1CA 3DEDA 3EUB3 1N60C 4DNSA 3RJ8A 3VTEA 3HSUA 3S1DA 5ADZA 2W3RA 3W8WA 3POPA 1N5WC 4PWBA 1FO4A 1N63C 3AN1A 4MLAA 4HG0A 2WDWA 5AE2A 2BVFA 1W1OA 2W54A 1V97A 1FFVC 2O3GA 2OAIA 3LAEA 1FFUC 2EXRA 4JB1A 2YVSA 5L6GA 2GQUA 3D2DA 1W1JA 5D79A 2MBRA 2QPMA 1JRPA 1I19A 4O95A 4BC9A 2GQTA 3GSYA 3AM9A 1E8GA 1W1QA 1VAOA 1WVFA 3ETRB 5FXPA 2E3TA 5AWVA 4XLOA 2Q4WA 1FIQB 5HMRA 2PLSA 2R2ZA 2P4PA 2Q85A 3TSJA 3LLBA 2PLIA 1MBTA 4ZOHB 3W8ZA 2R8DA 5G5GB 1WVEA 2RK5A 1N62C 2VFVA 3NS1B 3EJBB 1W1SA 4PVEA 3TX1A 1F0XA 5HQXA 2P13A 5AE1A 4PWCA 1ZR6A 2BVGA 1DIQA 2VAOA 2VFRA 3D2HA 3DQ0A 3NRZB 3TSHA 4PYTA 2NQWA 1SB3B 4BBYA 1DIIA 1T3QC 2VFSA 3RJAA 1MBBA 5I1VA 4PVHA 3EJEB 5G5HB 1AHVA 2P3HA 1AHZA 1JROA 1N5XA 2Y08A 5HHZA 2I0KA 5AE3A 2W55A 1W1MA 4ML8A 5FXDA 1W1LA 2W3SA 4UD8A 2UUVA 3B9JB 5K8EA 1QLTA 4JAYA 3KJMA 3PQBA 3FW7A 3NVWB 3SR6B 3FW8A 1E8HA 4OALA 2Y3SA 1W1RA 2VFTA 1N61C 1UXYA 3FWAA 3I99A 2BVHA 2UUUA 1HSKA 3D2JA 5L6FA 1RM6B 1E8FA 3S1EA 3W8XA 2IPIA 3FW9A 2VFUA 4EC3A 4BC7A 5FXFA 3C0PA 1ZXIC 4PZFA 2QKNA 3NVYB 1W1KA 3S1FA
chains in the Genus database with same CATH topology
1WYGA 4PVJA 2Y3RA 1AHUA 3BW7A 1DZNA 2AXRA 3NVVB 3NVZB 3HRDC 4PVKA 3AMZA 5I1WA 1VDVA 1QLUA 2Y4GA 1E0YA 3PM9A 4BCAA 3JS8A 5FXEA 3S1CA 3DEDA 3EUB3 1N60C 4DNSA 3RJ8A 3VTEA 3HSUA 3S1DA 5ADZA 2W3RA 3W8WA 3POPA 1N5WC 4PWBA 1FO4A 1N63C 3AN1A 4MLAA 4HG0A 2WDWA 5AE2A 2BVFA 1W1OA 2W54A 1V97A 1FFVC 2O3GA 2OAIA 3LAEA 1FFUC 2EXRA 4JB1A 2YVSA 5L6GA 2GQUA 3D2DA 1W1JA 5D79A 2MBRA 2QPMA 1JRPA 1I19A 4O95A 4BC9A 2GQTA 3GSYA 3AM9A 1E8GA 1W1QA 1VAOA 1WVFA 3ETRB 5FXPA 2E3TA 5AWVA 4XLOA 2Q4WA 1FIQB 5HMRA 2PLSA 2R2ZA 2P4PA 2Q85A 3TSJA 3LLBA 2PLIA 1MBTA 4ZOHB 3W8ZA 2R8DA 5G5GB 1WVEA 2RK5A 1N62C 2VFVA 3NS1B 1W1SA 4PVEA 3TX1A 1F0XA 5HQXA 2P13A 5AE1A 4PWCA 1ZR6A 2BVGA 1DIQA 2VAOA 2VFRA 3D2HA 3DQ0A 3NRZB 3TSHA 4PYTA 2NQWA 1SB3B 4BBYA 1DIIA 1T3QC 2VFSA 3RJAA 1MBBA 5I1VA 4PVHA 5G5HB 1AHVA 2P3HA 1AHZA 1JROA 1N5XA 2Y08A 5HHZA 2I0KA 5AE3A 2W55A 1W1MA 4ML8A 5FXDA 1W1LA 2W3SA 4UD8A 2UUVA 3B9JB 5K8EA 1QLTA 4JAYA 3KJMA 3PQBA 3FW7A 3NVWB 3SR6B 3FW8A 1E8HA 4OALA 2Y3SA 1W1RA 2VFTA 1N61C 1UXYA 3FWAA 3I99A 2BVHA 2UUUA 1HSKA 3D2JA 5L6FA 1RM6B 1E8FA 3S1EA 3W8XA 2IPIA 3FW9A 2VFUA 4EC3A 4BC7A 5FXFA 3C0PA 1ZXIC 4PZFA 2QKNA 3NVYB 1W1KA 3S1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYG A;  4PVJ A;  2Y3R A;  1AHU A;  3BW7 A;  1DZN A;  2AXR A;  3NVV B;  3NVZ B;  3HRD C;  4PVK A;  3AMZ A;  5I1W A;  1VDV A;  1QLU A;  2Y4G A;  1E0Y A;  3PM9 A;  4BCA A;  3JS8 A;  5FXE A;  3S1C A;  3DED A;  3EUB 3;  1N60 C;  4DNS A;  3RJ8 A;  3VTE A;  3HSU A;  3S1D A;  5ADZ A;  2W3R A;  3W8W A;  3POP A;  1N5W C;  4PWB A;  1FO4 A;  1N63 C;  3AN1 A;  4MLA A;  4HG0 A;  2WDW A;  5AE2 A;  2BVF A;  1W1O A;  2W54 A;  1V97 A;  1FFV C;  2O3G A;  2OAI A;  3LAE A;  1FFU C;  2EXR A;  4JB1 A;  2YVS A;  5L6G A;  2GQU A;  3D2D A;  1W1J A;  5D79 A;  2MBR A;  2QPM A;  1JRP A;  1I19 A;  4O95 A;  4BC9 A;  2GQT A;  3GSY A;  3AM9 A;  1E8G A;  1W1Q A;  1VAO A;  1WVF A;  3ETR B;  5FXP A;  2E3T A;  5AWV A;  4XLO A;  2Q4W A;  1FIQ B;  5HMR A;  2PLS A;  2R2Z A;  2P4P A;  2Q85 A;  3TSJ A;  3LLB A;  2PLI A;  1MBT A;  4ZOH B;  3W8Z A;  2R8D A;  5G5G B;  1WVE A;  2RK5 A;  1N62 C;  2VFV A;  3NS1 B;  1W1S A;  4PVE A;  3TX1 A;  1F0X A;  5HQX A;  2P13 A;  5AE1 A;  4PWC A;  1ZR6 A;  2BVG A;  1DIQ A;  2VAO A;  2VFR A;  3D2H A;  3DQ0 A;  3NRZ B;  3TSH A;  4PYT A;  2NQW A;  1SB3 B;  4BBY A;  1DII A;  1T3Q C;  2VFS A;  3RJA A;  1MBB A;  5I1V A;  4PVH A;  5G5H B;  1AHV A;  2P3H A;  1AHZ A;  1JRO A;  1N5X A;  2Y08 A;  5HHZ A;  2I0K A;  5AE3 A;  2W55 A;  1W1M A;  4ML8 A;  5FXD A;  1W1L A;  2W3S A;  4UD8 A;  5K8E A;  3B9J B;  1QLT A;  4JAY A;  3KJM A;  3PQB A;  3FW7 A;  3NVW B;  3SR6 B;  3FW8 A;  1E8H A;  4OAL A;  2Y3S A;  1W1R A;  2VFT A;  1N61 C;  1UXY A;  3FWA A;  3I99 A;  2BVH A;  1HSK A;  3D2J A;  5L6F A;  1RM6 B;  1E8F A;  3S1E A;  3W8X A;  2IPI A;  3FW9 A;  2VFU A;  4EC3 A;  4BC7 A;  5FXF A;  3C0P A;  1ZXI C;  4PZF A;  2QKN A;  3NVY B;  1W1K A;  3S1F A; 
#chains in the Genus database with same CATH topology
 1WYG A;  4PVJ A;  2Y3R A;  1AHU A;  3BW7 A;  1DZN A;  3EJD B;  2AXR A;  3NVV B;  3NVZ B;  3HRD C;  4PVK A;  3AMZ A;  5I1W A;  1VDV A;  1QLU A;  2Y4G A;  1E0Y A;  3PM9 A;  4BCA A;  3JS8 A;  5FXE A;  3S1C A;  3DED A;  3EUB 3;  1N60 C;  4DNS A;  3RJ8 A;  3VTE A;  3HSU A;  3S1D A;  5ADZ A;  2W3R A;  3W8W A;  3POP A;  1N5W C;  4PWB A;  1FO4 A;  1N63 C;  3AN1 A;  4MLA A;  4HG0 A;  2WDW A;  5AE2 A;  2BVF A;  1W1O A;  2W54 A;  1V97 A;  1FFV C;  2O3G A;  2OAI A;  3LAE A;  1FFU C;  2EXR A;  4JB1 A;  2YVS A;  5L6G A;  2GQU A;  3D2D A;  1W1J A;  5D79 A;  2MBR A;  2QPM A;  1JRP A;  1I19 A;  4O95 A;  4BC9 A;  2GQT A;  3GSY A;  3AM9 A;  1E8G A;  1W1Q A;  1VAO A;  1WVF A;  3ETR B;  5FXP A;  2E3T A;  5AWV A;  4XLO A;  2Q4W A;  1FIQ B;  5HMR A;  2PLS A;  2R2Z A;  2P4P A;  2Q85 A;  3TSJ A;  3LLB A;  2PLI A;  1MBT A;  4ZOH B;  3W8Z A;  2R8D A;  5G5G B;  1WVE A;  2RK5 A;  1N62 C;  2VFV A;  3NS1 B;  3EJB B;  1W1S A;  4PVE A;  3TX1 A;  1F0X A;  5HQX A;  2P13 A;  5AE1 A;  4PWC A;  1ZR6 A;  2BVG A;  1DIQ A;  2VAO A;  2VFR A;  3D2H A;  3DQ0 A;  3NRZ B;  3TSH A;  4PYT A;  2NQW A;  1SB3 B;  4BBY A;  1DII A;  1T3Q C;  2VFS A;  3RJA A;  1MBB A;  5I1V A;  4PVH A;  3EJE B;  5G5H B;  1AHV A;  2P3H A;  1AHZ A;  1JRO A;  1N5X A;  2Y08 A;  5HHZ A;  2I0K A;  5AE3 A;  2W55 A;  1W1M A;  4ML8 A;  5FXD A;  1W1L A;  2W3S A;  4UD8 A;  2UUV A;  3B9J B;  5K8E A;  1QLT A;  4JAY A;  3KJM A;  3PQB A;  3FW7 A;  3NVW B;  3SR6 B;  3FW8 A;  1E8H A;  4OAL A;  2Y3S A;  1W1R A;  2VFT A;  1N61 C;  1UXY A;  3FWA A;  3I99 A;  2BVH A;  2UUU A;  1HSK A;  3D2J A;  5L6F A;  1RM6 B;  1E8F A;  3S1E A;  3W8X A;  2IPI A;  3FW9 A;  2VFU A;  4EC3 A;  4BC7 A;  5FXF A;  3C0P A;  1ZXI C;  4PZF A;  2QKN A;  3NVY B;  1W1K A;  3S1F A; 
#chains in the Genus database with same CATH homology
 1WYG A;  4PVJ A;  2Y3R A;  1AHU A;  3BW7 A;  1DZN A;  2AXR A;  3NVV B;  3NVZ B;  3HRD C;  4PVK A;  3AMZ A;  5I1W A;  1VDV A;  1QLU A;  2Y4G A;  1E0Y A;  3PM9 A;  4BCA A;  3JS8 A;  5FXE A;  3S1C A;  3DED A;  3EUB 3;  1N60 C;  4DNS A;  3RJ8 A;  3VTE A;  3HSU A;  3S1D A;  5ADZ A;  2W3R A;  3W8W A;  3POP A;  1N5W C;  4PWB A;  1FO4 A;  1N63 C;  3AN1 A;  4MLA A;  4HG0 A;  2WDW A;  5AE2 A;  2BVF A;  1W1O A;  2W54 A;  1V97 A;  1FFV C;  2O3G A;  2OAI A;  3LAE A;  1FFU C;  2EXR A;  4JB1 A;  2YVS A;  5L6G A;  2GQU A;  3D2D A;  1W1J A;  5D79 A;  2MBR A;  2QPM A;  1JRP A;  1I19 A;  4O95 A;  4BC9 A;  2GQT A;  3GSY A;  3AM9 A;  1E8G A;  1W1Q A;  1VAO A;  1WVF A;  3ETR B;  5FXP A;  2E3T A;  5AWV A;  4XLO A;  2Q4W A;  1FIQ B;  5HMR A;  2PLS A;  2R2Z A;  2P4P A;  2Q85 A;  3TSJ A;  3LLB A;  2PLI A;  1MBT A;  4ZOH B;  3W8Z A;  2R8D A;  5G5G B;  1WVE A;  2RK5 A;  1N62 C;  2VFV A;  3NS1 B;  1W1S A;  4PVE A;  3TX1 A;  1F0X A;  5HQX A;  2P13 A;  5AE1 A;  4PWC A;  1ZR6 A;  2BVG A;  1DIQ A;  2VAO A;  2VFR A;  3D2H A;  3DQ0 A;  3NRZ B;  3TSH A;  4PYT A;  2NQW A;  1SB3 B;  4BBY A;  1DII A;  1T3Q C;  2VFS A;  3RJA A;  1MBB A;  5I1V A;  4PVH A;  5G5H B;  1AHV A;  2P3H A;  1AHZ A;  1JRO A;  1N5X A;  2Y08 A;  5HHZ A;  2I0K A;  5AE3 A;  2W55 A;  1W1M A;  4ML8 A;  5FXD A;  1W1L A;  2W3S A;  4UD8 A;  2UUV A;  3B9J B;  5K8E A;  1QLT A;  4JAY A;  3KJM A;  3PQB A;  3FW7 A;  3NVW B;  3SR6 B;  3FW8 A;  1E8H A;  4OAL A;  2Y3S A;  1W1R A;  2VFT A;  1N61 C;  1UXY A;  3FWA A;  3I99 A;  2BVH A;  2UUU A;  1HSK A;  3D2J A;  5L6F A;  1RM6 B;  1E8F A;  3S1E A;  3W8X A;  2IPI A;  3FW9 A;  2VFU A;  4EC3 A;  4BC7 A;  5FXF A;  3C0P A;  1ZXI C;  4PZF A;  2QKN A;  3NVY B;  1W1K A;  3S1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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