2AXRA

Crystal structure of glucooligosaccharide oxidase from acremonium strictum: a novel flavinylation of 6-s-cysteinyl, 8alpha-n1-histidyl fad
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords glucooligosaccharide oxidase
publication title Crystal Structure of Glucooligosaccharide Oxidase from Acremonium strictum: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8{alpha}-N1-HISTIDYL FAD
pubmed doi rcsb
source organism Acremonium strictum
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2axrA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2axrA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2axrA03
5HQXA 3W8ZA 2R2ZA 4PWBA 3NS1B 3NVZB 2AXRA 5G5HB 3TSHA 2GQTA 4PVHA 2E3TA 3S1FA 5L6FA 4MLAA 1E8FA 1I19A 3LAEA 1FFVC 1W1SA 1N62C 1ZR6A 3DQ0A 2VFUA 3NVYB 4PWCA 4ZOHB 1JROA 2W3SA 3D2HA 3AN1A 3KJMA 3PQBA 3JS8A 5HMRA 1N60C 3EUB3 4BCAA 4PYTA 2MBRA 5I1WA 4PVEA 4BC9A 4DNSA 1HSKA 2P3HA 1WYGA 2EXRA 4BBYA 3HRDC 1N5WC 2Y4GA 1W1RA 5G5GB 1SB3B 4JAYA 3FW9A 5HHZA 1DIIA 2W3RA 2I0KA 1AHVA 1RM6B 2Q4WA 5I1VA 2Y08A 1N63C 3BW7A 2Y3RA 1ZXIC 1QLTA 1E8HA 2YVSA 1WVFA 3I99A 2VFVA 2Q85A 3C0PA 1W1KA 1AHZA 5K8EA 3FW7A 2P13A 3PM9A 4O95A 2PLSA 5AWVA 1E0YA 3D2DA 3POPA 3NVWB 2QKNA 1F0XA 1W1LA 2W55A 2PLIA 3HSUA 3S1EA 2BVFA 1FIQB 2RK5A 3W8WA 2BVGA 3SR6B 5AE3A 1WVEA 4OALA 3FW8A 2VFSA 2O3GA 1VDVA 2VFTA 3VTEA 3RJ8A 5L6GA 3ETRB 1V97A 3B9JB 3NVVB 3AMZA 5FXEA 4PZFA 4EC3A 3W8XA 3AM9A 3FWAA 4PVJA 1FFUC 2R8DA 1N5XA 1UXYA 1FO4A 2QPMA 2W54A 3RJAA 5D79A 1DZNA 2Y3SA 1QLUA 1DIQA 1AHUA 1MBTA 1T3QC 1W1OA 3S1CA 2NQWA 2OAIA 3TSJA 4BC7A 4HG0A 4XLOA 2IPIA 1VAOA 1W1MA 3DEDA 3GSYA 4UD8A 1W1JA 5FXPA 4ML8A 2BVHA 4JB1A 1N61C 3LLBA 5AE2A 1MBBA 5ADZA 1JRPA 4PVKA 2P4PA 3S1DA 1W1QA 2GQUA 3TX1A 2VAOA 5FXFA 1E8GA 5FXDA 2VFRA 3NRZB 5AE1A 2WDWA 3D2JA
chains in the Genus database with same CATH superfamily
5HQXA 3W8ZA 2R2ZA 4PWBA 3NS1B 3NVZB 2AXRA 5G5HB 3TSHA 2GQTA 4PVHA 2E3TA 3S1FA 5L6FA 4MLAA 1E8FA 1I19A 3LAEA 1FFVC 1W1SA 1N62C 1ZR6A 3DQ0A 2VFUA 3NVYB 4PWCA 4ZOHB 1JROA 2W3SA 3D2HA 3AN1A 3KJMA 3PQBA 3JS8A 5HMRA 1N60C 3EUB3 4BCAA 3EJBB 4PYTA 2MBRA 5I1WA 4PVEA 4BC9A 4DNSA 1HSKA 2P3HA 1WYGA 2EXRA 4BBYA 3HRDC 2UUVA 1N5WC 2Y4GA 1W1RA 5G5GB 1SB3B 4JAYA 3EJEB 3FW9A 5HHZA 1DIIA 2W3RA 2I0KA 1AHVA 1RM6B 2Q4WA 5I1VA 2Y08A 1N63C 3BW7A 2Y3RA 1ZXIC 1QLTA 1E8HA 2YVSA 1WVFA 3I99A 2VFVA 2Q85A 2UUUA 3C0PA 1W1KA 1AHZA 5K8EA 3FW7A 2P13A 3PM9A 4O95A 2PLSA 5AWVA 1E0YA 3D2DA 3POPA 3NVWB 2QKNA 1F0XA 1W1LA 2W55A 2PLIA 3HSUA 3S1EA 2BVFA 1FIQB 2RK5A 3W8WA 2BVGA 3SR6B 5AE3A 1WVEA 4OALA 3FW8A 2VFSA 2O3GA 1VDVA 2VFTA 3VTEA 3RJ8A 5L6GA 3ETRB 1V97A 3B9JB 3NVVB 3AMZA 5FXEA 4PZFA 4EC3A 3W8XA 3AM9A 3FWAA 4PVJA 1FFUC 2R8DA 1N5XA 1UXYA 1FO4A 2QPMA 2W54A 3RJAA 5D79A 1DZNA 2Y3SA 1QLUA 1DIQA 1AHUA 1MBTA 1T3QC 1W1OA 3S1CA 2NQWA 2OAIA 3TSJA 4BC7A 4HG0A 4XLOA 2IPIA 1VAOA 1W1MA 3DEDA 3GSYA 4UD8A 1W1JA 5FXPA 4ML8A 2BVHA 4JB1A 1N61C 3LLBA 5AE2A 1MBBA 5ADZA 1JRPA 4PVKA 2P4PA 3S1DA 1W1QA 2GQUA 3TX1A 2VAOA 5FXFA 1E8GA 5FXDA 2VFRA 3NRZB 5AE1A 3EJDB 2WDWA 3D2JA
chains in the Genus database with same CATH topology
5HQXA 3W8ZA 2R2ZA 4PWBA 3NS1B 3NVZB 2AXRA 5G5HB 3TSHA 2GQTA 4PVHA 2E3TA 3S1FA 5L6FA 4MLAA 1E8FA 1I19A 3LAEA 1FFVC 1W1SA 1N62C 1ZR6A 3DQ0A 2VFUA 3NVYB 4PWCA 4ZOHB 1JROA 2W3SA 3D2HA 3AN1A 3KJMA 3PQBA 3JS8A 5HMRA 1N60C 3EUB3 4BCAA 4PYTA 2MBRA 5I1WA 4PVEA 4BC9A 4DNSA 1HSKA 2P3HA 1WYGA 2EXRA 4BBYA 3HRDC 2UUVA 1N5WC 2Y4GA 1W1RA 5G5GB 1SB3B 4JAYA 3FW9A 5HHZA 1DIIA 2W3RA 2I0KA 1AHVA 1RM6B 2Q4WA 5I1VA 2Y08A 1N63C 3BW7A 2Y3RA 1ZXIC 1QLTA 1E8HA 2YVSA 1WVFA 3I99A 2VFVA 2Q85A 2UUUA 3C0PA 1W1KA 1AHZA 5K8EA 3FW7A 2P13A 3PM9A 4O95A 2PLSA 5AWVA 1E0YA 3D2DA 3POPA 3NVWB 2QKNA 1F0XA 1W1LA 2W55A 2PLIA 3HSUA 3S1EA 2BVFA 1FIQB 2RK5A 3W8WA 2BVGA 3SR6B 5AE3A 1WVEA 4OALA 3FW8A 2VFSA 2O3GA 1VDVA 2VFTA 3VTEA 3RJ8A 5L6GA 3ETRB 1V97A 3B9JB 3NVVB 3AMZA 5FXEA 4PZFA 4EC3A 3W8XA 3AM9A 3FWAA 4PVJA 1FFUC 2R8DA 1N5XA 1UXYA 1FO4A 2QPMA 2W54A 3RJAA 5D79A 1DZNA 2Y3SA 1QLUA 1DIQA 1AHUA 1MBTA 1T3QC 1W1OA 3S1CA 2NQWA 2OAIA 3TSJA 4BC7A 4HG0A 4XLOA 2IPIA 1VAOA 1W1MA 3DEDA 3GSYA 4UD8A 1W1JA 5FXPA 4ML8A 2BVHA 4JB1A 1N61C 3LLBA 5AE2A 1MBBA 5ADZA 1JRPA 4PVKA 2P4PA 3S1DA 1W1QA 2GQUA 3TX1A 2VAOA 5FXFA 1E8GA 5FXDA 2VFRA 3NRZB 5AE1A 2WDWA 3D2JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HQX A;  3W8Z A;  2R2Z A;  4PWB A;  3NS1 B;  3NVZ B;  2AXR A;  5G5H B;  3TSH A;  2GQT A;  4PVH A;  2E3T A;  3S1F A;  5L6F A;  4MLA A;  1E8F A;  1I19 A;  3LAE A;  1FFV C;  1W1S A;  1N62 C;  1ZR6 A;  3DQ0 A;  2VFU A;  3NVY B;  4PWC A;  4ZOH B;  1JRO A;  2W3S A;  3D2H A;  3AN1 A;  3KJM A;  3PQB A;  3JS8 A;  5HMR A;  1N60 C;  3EUB 3;  4BCA A;  4PYT A;  2MBR A;  5I1W A;  4PVE A;  4BC9 A;  4DNS A;  1HSK A;  2P3H A;  1WYG A;  2EXR A;  4BBY A;  3HRD C;  1N5W C;  2Y4G A;  1W1R A;  5G5G B;  1SB3 B;  4JAY A;  3FW9 A;  5HHZ A;  1DII A;  2W3R A;  2I0K A;  1AHV A;  1RM6 B;  2Q4W A;  5I1V A;  2Y08 A;  1N63 C;  3BW7 A;  2Y3R A;  1ZXI C;  1QLT A;  1E8H A;  2YVS A;  1WVF A;  3I99 A;  2VFV A;  2Q85 A;  3C0P A;  1W1K A;  1AHZ A;  5K8E A;  3FW7 A;  2P13 A;  3PM9 A;  4O95 A;  2PLS A;  5AWV A;  1E0Y A;  3D2D A;  3POP A;  3NVW B;  2QKN A;  1F0X A;  1W1L A;  2W55 A;  2PLI A;  3HSU A;  3S1E A;  2BVF A;  1FIQ B;  2RK5 A;  3W8W A;  2BVG A;  3SR6 B;  5AE3 A;  1WVE A;  4OAL A;  3FW8 A;  2VFS A;  2O3G A;  1VDV A;  2VFT A;  3VTE A;  3RJ8 A;  5L6G A;  3ETR B;  1V97 A;  3B9J B;  3NVV B;  3AMZ A;  5FXE A;  4PZF A;  4EC3 A;  3W8X A;  3AM9 A;  3FWA A;  4PVJ A;  1FFU C;  2R8D A;  1N5X A;  1UXY A;  1FO4 A;  2QPM A;  2W54 A;  3RJA A;  5D79 A;  1DZN A;  2Y3S A;  1QLU A;  1DIQ A;  1AHU A;  1MBT A;  1T3Q C;  1W1O A;  3S1C A;  2NQW A;  2OAI A;  3TSJ A;  4BC7 A;  4HG0 A;  4XLO A;  2IPI A;  1VAO A;  1W1M A;  3DED A;  3GSY A;  4UD8 A;  1W1J A;  5FXP A;  4ML8 A;  2BVH A;  4JB1 A;  1N61 C;  3LLB A;  5AE2 A;  1MBB A;  5ADZ A;  1JRP A;  4PVK A;  2P4P A;  3S1D A;  1W1Q A;  2GQU A;  3TX1 A;  2VAO A;  5FXF A;  1E8G A;  5FXD A;  2VFR A;  3NRZ B;  5AE1 A;  2WDW A;  3D2J A; 
#chains in the Genus database with same CATH topology
 5HQX A;  3W8Z A;  2R2Z A;  4PWB A;  3NS1 B;  3NVZ B;  2AXR A;  5G5H B;  3TSH A;  2GQT A;  4PVH A;  2E3T A;  3S1F A;  5L6F A;  4MLA A;  1E8F A;  1I19 A;  3LAE A;  1FFV C;  1W1S A;  1N62 C;  1ZR6 A;  3DQ0 A;  2VFU A;  3NVY B;  4PWC A;  4ZOH B;  1JRO A;  2W3S A;  3D2H A;  3AN1 A;  3KJM A;  3PQB A;  3JS8 A;  5HMR A;  1N60 C;  3EUB 3;  4BCA A;  3EJB B;  4PYT A;  2MBR A;  5I1W A;  4PVE A;  4BC9 A;  4DNS A;  1HSK A;  2P3H A;  1WYG A;  2EXR A;  4BBY A;  3HRD C;  2UUV A;  1N5W C;  2Y4G A;  1W1R A;  5G5G B;  1SB3 B;  4JAY A;  3EJE B;  3FW9 A;  5HHZ A;  1DII A;  2W3R A;  2I0K A;  1AHV A;  1RM6 B;  2Q4W A;  5I1V A;  2Y08 A;  1N63 C;  3BW7 A;  2Y3R A;  1ZXI C;  1QLT A;  1E8H A;  2YVS A;  1WVF A;  3I99 A;  2VFV A;  2Q85 A;  2UUU A;  3C0P A;  1W1K A;  1AHZ A;  5K8E A;  3FW7 A;  2P13 A;  3PM9 A;  4O95 A;  2PLS A;  5AWV A;  1E0Y A;  3D2D A;  3POP A;  3NVW B;  2QKN A;  1F0X A;  1W1L A;  2W55 A;  2PLI A;  3HSU A;  3S1E A;  2BVF A;  1FIQ B;  2RK5 A;  3W8W A;  2BVG A;  3SR6 B;  5AE3 A;  1WVE A;  4OAL A;  3FW8 A;  2VFS A;  2O3G A;  1VDV A;  2VFT A;  3VTE A;  3RJ8 A;  5L6G A;  3ETR B;  1V97 A;  3B9J B;  3NVV B;  3AMZ A;  5FXE A;  4PZF A;  4EC3 A;  3W8X A;  3AM9 A;  3FWA A;  4PVJ A;  1FFU C;  2R8D A;  1N5X A;  1UXY A;  1FO4 A;  2QPM A;  2W54 A;  3RJA A;  5D79 A;  1DZN A;  2Y3S A;  1QLU A;  1DIQ A;  1AHU A;  1MBT A;  1T3Q C;  1W1O A;  3S1C A;  2NQW A;  2OAI A;  3TSJ A;  4BC7 A;  4HG0 A;  4XLO A;  2IPI A;  1VAO A;  1W1M A;  3DED A;  3GSY A;  4UD8 A;  1W1J A;  5FXP A;  4ML8 A;  2BVH A;  4JB1 A;  1N61 C;  3LLB A;  5AE2 A;  1MBB A;  5ADZ A;  1JRP A;  4PVK A;  2P4P A;  3S1D A;  1W1Q A;  2GQU A;  3TX1 A;  2VAO A;  5FXF A;  1E8G A;  5FXD A;  2VFR A;  3NRZ B;  5AE1 A;  3EJD B;  2WDW A;  3D2J A; 
#chains in the Genus database with same CATH homology
 5HQX A;  3W8Z A;  2R2Z A;  4PWB A;  3NS1 B;  3NVZ B;  2AXR A;  5G5H B;  3TSH A;  2GQT A;  4PVH A;  2E3T A;  3S1F A;  5L6F A;  4MLA A;  1E8F A;  1I19 A;  3LAE A;  1FFV C;  1W1S A;  1N62 C;  1ZR6 A;  3DQ0 A;  2VFU A;  3NVY B;  4PWC A;  4ZOH B;  1JRO A;  2W3S A;  3D2H A;  3AN1 A;  3KJM A;  3PQB A;  3JS8 A;  5HMR A;  1N60 C;  3EUB 3;  4BCA A;  4PYT A;  2MBR A;  5I1W A;  4PVE A;  4BC9 A;  4DNS A;  1HSK A;  2P3H A;  1WYG A;  2EXR A;  4BBY A;  3HRD C;  2UUV A;  1N5W C;  2Y4G A;  1W1R A;  5G5G B;  1SB3 B;  4JAY A;  3FW9 A;  5HHZ A;  1DII A;  2W3R A;  2I0K A;  1AHV A;  1RM6 B;  2Q4W A;  5I1V A;  2Y08 A;  1N63 C;  3BW7 A;  2Y3R A;  1ZXI C;  1QLT A;  1E8H A;  2YVS A;  1WVF A;  3I99 A;  2VFV A;  2Q85 A;  2UUU A;  3C0P A;  1W1K A;  1AHZ A;  5K8E A;  3FW7 A;  2P13 A;  3PM9 A;  4O95 A;  2PLS A;  5AWV A;  1E0Y A;  3D2D A;  3POP A;  3NVW B;  2QKN A;  1F0X A;  1W1L A;  2W55 A;  2PLI A;  3HSU A;  3S1E A;  2BVF A;  1FIQ B;  2RK5 A;  3W8W A;  2BVG A;  3SR6 B;  5AE3 A;  1WVE A;  4OAL A;  3FW8 A;  2VFS A;  2O3G A;  1VDV A;  2VFT A;  3VTE A;  3RJ8 A;  5L6G A;  3ETR B;  1V97 A;  3B9J B;  3NVV B;  3AMZ A;  5FXE A;  4PZF A;  4EC3 A;  3W8X A;  3AM9 A;  3FWA A;  4PVJ A;  1FFU C;  2R8D A;  1N5X A;  1UXY A;  1FO4 A;  2QPM A;  2W54 A;  3RJA A;  5D79 A;  1DZN A;  2Y3S A;  1QLU A;  1DIQ A;  1AHU A;  1MBT A;  1T3Q C;  1W1O A;  3S1C A;  2NQW A;  2OAI A;  3TSJ A;  4BC7 A;  4HG0 A;  4XLO A;  2IPI A;  1VAO A;  1W1M A;  3DED A;  3GSY A;  4UD8 A;  1W1J A;  5FXP A;  4ML8 A;  2BVH A;  4JB1 A;  1N61 C;  3LLB A;  5AE2 A;  1MBB A;  5ADZ A;  1JRP A;  4PVK A;  2P4P A;  3S1D A;  1W1Q A;  2GQU A;  3TX1 A;  2VAO A;  5FXF A;  1E8G A;  5FXD A;  2VFR A;  3NRZ B;  5AE1 A;  2WDW A;  3D2J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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