2AXRA

Crystal structure of glucooligosaccharide oxidase from acremonium strictum: a novel flavinylation of 6-s-cysteinyl, 8alpha-n1-histidyl fad
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
479
structure length
479
Chain Sequence
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords glucooligosaccharide oxidase
publication title Crystal Structure of Glucooligosaccharide Oxidase from Acremonium strictum: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8{alpha}-N1-HISTIDYL FAD
pubmed doi rcsb
source organism Acremonium strictum
total genus 161
structure length 479
sequence length 479
ec nomenclature ec 1.1.3.-:
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 2axrA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2axrA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2axrA03
5L6GA 3B9JB 5ADZA 5FXPA 3NVWB 4PVJA 1RM6B 2O3GA 2PLSA 1E8GA 2R2ZA 3TSJA 3DQ0A 3TSHA 2VFUA 2VFRA 2GQUA 2WDWA 2W54A 3FW7A 1DIQA 1E0YA 1MBBA 1UXYA 2BVFA 3EUB3 3FWAA 5HQXA 5FXFA 1AHUA 4PWBA 3W8XA 3NVZB 5HMRA 2Y3SA 1FFUC 1N62C 4PZFA 2VFSA 1FIQB 5D79A 1F0XA 1E8FA 3KJMA 1QLTA 3D2JA 4UD8A 4JAYA 4EC3A 2IPIA 5K8EA 5AWVA 3I99A 1T3QC 3W8ZA 2RK5A 2GQTA 2P3HA 1DZNA 3NVYB 3NRZB 1W1QA 3LLBA 1N60C 1W1LA 4PVKA 4XLOA 3S1CA 1JROA 3BW7A 1N5WC 3PM9A 3GSYA 3AM9A 4BBYA 2MBRA 1W1MA 1FO4A 2W55A 2QPMA 2Y3RA 5HHZA 2BVGA 3C0PA 5AE1A 1E8HA 3POPA 2Y08A 2E3TA 4PYTA 2P13A 1WVEA 1HSKA 1VDVA 1AHVA 1W1RA 3HRDC 2Q4WA 5G5GB 5I1WA 3AMZA 4MLAA 3FW9A 2P4PA 5L6FA 3RJ8A 3FW8A 2EXRA 1W1SA 4BC7A 4ML8A 4BCAA 2QKNA 4JB1A 1W1KA 5FXEA 3NVVB 5G5HB 1SB3B 2PLIA 1FFVC 5FXDA 3LAEA 3HSUA 1AHZA 2AXRA 1W1OA 2BVHA 1V97A 4PVEA 2VFVA 1WVFA 3D2HA 5AE2A 3D2DA 1MBTA 1N5XA 1W1JA 3W8WA 3DEDA 2Y4GA 3RJAA 1DIIA 4BC9A 1N63C 2I0KA 4O95A 2OAIA 1ZR6A 4DNSA 1WYGA 2YVSA 2VAOA 1ZXIC 1I19A 3S1EA 4ZOHB 1VAOA 1N61C 5AE3A 2W3SA 2NQWA 3NS1B 3SR6B 4HG0A 1QLUA 2Q85A 3AN1A 3ETRB 3TX1A 3PQBA 4PWCA 5I1VA 4OALA 1JRPA 4PVHA 3JS8A 3S1FA 2W3RA 2VFTA 3VTEA 3S1DA 2R8DA
chains in the Genus database with same CATH superfamily
5L6GA 3B9JB 5ADZA 3EJBB 5FXPA 3NVWB 4PVJA 1RM6B 2O3GA 2PLSA 1E8GA 2R2ZA 3TSJA 3DQ0A 3TSHA 2VFUA 2VFRA 2GQUA 2WDWA 2W54A 3FW7A 1DIQA 1E0YA 1MBBA 1UXYA 2BVFA 3EUB3 3FWAA 5HQXA 5FXFA 1AHUA 4PWBA 3W8XA 3NVZB 5HMRA 2Y3SA 1FFUC 1N62C 4PZFA 2VFSA 1FIQB 5D79A 1F0XA 1E8FA 3KJMA 1QLTA 3D2JA 3EJDB 4UD8A 4JAYA 4EC3A 2IPIA 5K8EA 5AWVA 3I99A 1T3QC 3W8ZA 2RK5A 2GQTA 2P3HA 1DZNA 3NVYB 2UUVA 3NRZB 1W1QA 3LLBA 1N60C 1W1LA 4PVKA 4XLOA 3S1CA 1JROA 3BW7A 1N5WC 3PM9A 3GSYA 3EJEB 3AM9A 2UUUA 4BBYA 2MBRA 1W1MA 1FO4A 2W55A 2QPMA 2Y3RA 5HHZA 2BVGA 3C0PA 5AE1A 1E8HA 3POPA 2Y08A 2E3TA 4PYTA 2P13A 1WVEA 1HSKA 1VDVA 1AHVA 1W1RA 3HRDC 2Q4WA 5G5GB 5I1WA 3AMZA 4MLAA 3FW9A 2P4PA 5L6FA 3RJ8A 3FW8A 2EXRA 1W1SA 4BC7A 4ML8A 4BCAA 2QKNA 4JB1A 1W1KA 5FXEA 3NVVB 5G5HB 1SB3B 2PLIA 1FFVC 5FXDA 3HSUA 3LAEA 1AHZA 2AXRA 1W1OA 2BVHA 1V97A 4PVEA 2VFVA 1WVFA 3D2HA 5AE2A 3D2DA 1MBTA 1N5XA 1W1JA 3W8WA 2Y4GA 3DEDA 3RJAA 1DIIA 4BC9A 1N63C 2I0KA 4O95A 2OAIA 1ZR6A 4DNSA 1WYGA 2YVSA 2VAOA 1ZXIC 1I19A 3S1EA 4ZOHB 1VAOA 1N61C 5AE3A 2W3SA 2NQWA 3NS1B 3SR6B 4HG0A 1QLUA 2Q85A 3AN1A 3ETRB 3TX1A 3PQBA 4PWCA 5I1VA 4OALA 1JRPA 4PVHA 3JS8A 3S1FA 2W3RA 2VFTA 3VTEA 3S1DA 2R8DA
chains in the Genus database with same CATH topology
5L6GA 3B9JB 5ADZA 5FXPA 3NVWB 4PVJA 1RM6B 2O3GA 2PLSA 1E8GA 2R2ZA 3TSJA 3DQ0A 3TSHA 2VFUA 2VFRA 2GQUA 2WDWA 2W54A 3FW7A 1DIQA 1E0YA 1MBBA 1UXYA 2BVFA 3EUB3 3FWAA 5HQXA 5FXFA 1AHUA 4PWBA 3W8XA 3NVZB 5HMRA 2Y3SA 1FFUC 1N62C 4PZFA 2VFSA 1FIQB 5D79A 1F0XA 1E8FA 3KJMA 1QLTA 3D2JA 4UD8A 4JAYA 4EC3A 2IPIA 5K8EA 5AWVA 3I99A 1T3QC 3W8ZA 2RK5A 2GQTA 2P3HA 1DZNA 2UUVA 3NVYB 3NRZB 1W1QA 3LLBA 1N60C 1W1LA 4PVKA 4XLOA 3S1CA 1JROA 3BW7A 1N5WC 3PM9A 3GSYA 3AM9A 2UUUA 4BBYA 2MBRA 1W1MA 1FO4A 2W55A 2QPMA 2Y3RA 5HHZA 2BVGA 3C0PA 5AE1A 1E8HA 3POPA 2Y08A 2E3TA 4PYTA 2P13A 1WVEA 1HSKA 1VDVA 1AHVA 1W1RA 3HRDC 2Q4WA 5G5GB 5I1WA 3AMZA 4MLAA 3FW9A 2P4PA 5L6FA 3RJ8A 3FW8A 2EXRA 1W1SA 4BC7A 4ML8A 4BCAA 2QKNA 4JB1A 1W1KA 5FXEA 3NVVB 5G5HB 1SB3B 2PLIA 1FFVC 5FXDA 3HSUA 3LAEA 1AHZA 2AXRA 1W1OA 2BVHA 1V97A 4PVEA 2VFVA 1WVFA 3D2HA 5AE2A 3D2DA 1MBTA 1N5XA 1W1JA 3W8WA 2Y4GA 3DEDA 3RJAA 1DIIA 4BC9A 1N63C 2I0KA 4O95A 2OAIA 1ZR6A 4DNSA 1WYGA 2YVSA 2VAOA 1ZXIC 1I19A 3S1EA 4ZOHB 1VAOA 1N61C 5AE3A 2W3SA 2NQWA 3NS1B 3SR6B 4HG0A 1QLUA 2Q85A 3AN1A 3ETRB 3TX1A 3PQBA 4PWCA 5I1VA 4OALA 1JRPA 4PVHA 3JS8A 3S1FA 2W3RA 2VFTA 3VTEA 3S1DA 2R8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6G A;  3B9J B;  5ADZ A;  5FXP A;  3NVW B;  4PVJ A;  1RM6 B;  2O3G A;  2PLS A;  1E8G A;  2R2Z A;  3TSJ A;  3DQ0 A;  3TSH A;  2VFU A;  2VFR A;  2GQU A;  2WDW A;  2W54 A;  3FW7 A;  1DIQ A;  1E0Y A;  1MBB A;  1UXY A;  2BVF A;  3EUB 3;  3FWA A;  5HQX A;  5FXF A;  1AHU A;  4PWB A;  3W8X A;  3NVZ B;  5HMR A;  2Y3S A;  1FFU C;  1N62 C;  4PZF A;  2VFS A;  1FIQ B;  5D79 A;  1F0X A;  1E8F A;  3KJM A;  1QLT A;  3D2J A;  4UD8 A;  4JAY A;  4EC3 A;  2IPI A;  5K8E A;  5AWV A;  3I99 A;  1T3Q C;  3W8Z A;  2RK5 A;  2GQT A;  2P3H A;  1DZN A;  3NVY B;  3NRZ B;  1W1Q A;  3LLB A;  1N60 C;  1W1L A;  4PVK A;  4XLO A;  3S1C A;  1JRO A;  3BW7 A;  1N5W C;  3PM9 A;  3GSY A;  3AM9 A;  4BBY A;  2MBR A;  1W1M A;  1FO4 A;  2W55 A;  2QPM A;  2Y3R A;  5HHZ A;  2BVG A;  3C0P A;  5AE1 A;  1E8H A;  3POP A;  2Y08 A;  2E3T A;  4PYT A;  2P13 A;  1WVE A;  1HSK A;  1VDV A;  1AHV A;  1W1R A;  3HRD C;  2Q4W A;  5G5G B;  5I1W A;  3AMZ A;  4MLA A;  3FW9 A;  2P4P A;  5L6F A;  3RJ8 A;  3FW8 A;  2EXR A;  1W1S A;  4BC7 A;  4ML8 A;  4BCA A;  2QKN A;  4JB1 A;  1W1K A;  5FXE A;  3NVV B;  5G5H B;  1SB3 B;  2PLI A;  1FFV C;  5FXD A;  3LAE A;  3HSU A;  1AHZ A;  2AXR A;  1W1O A;  2BVH A;  1V97 A;  4PVE A;  2VFV A;  1WVF A;  3D2H A;  5AE2 A;  3D2D A;  1MBT A;  1N5X A;  1W1J A;  3W8W A;  3DED A;  2Y4G A;  3RJA A;  1DII A;  4BC9 A;  1N63 C;  2I0K A;  4O95 A;  2OAI A;  1ZR6 A;  4DNS A;  1WYG A;  2YVS A;  2VAO A;  1ZXI C;  1I19 A;  3S1E A;  4ZOH B;  1VAO A;  1N61 C;  5AE3 A;  2W3S A;  2NQW A;  3NS1 B;  3SR6 B;  4HG0 A;  1QLU A;  2Q85 A;  3AN1 A;  3ETR B;  3TX1 A;  3PQB A;  4PWC A;  5I1V A;  4OAL A;  1JRP A;  4PVH A;  3JS8 A;  3S1F A;  2W3R A;  2VFT A;  3VTE A;  3S1D A;  2R8D A; 
#chains in the Genus database with same CATH topology
 5L6G A;  3B9J B;  5ADZ A;  3EJB B;  5FXP A;  3NVW B;  4PVJ A;  1RM6 B;  2O3G A;  2PLS A;  1E8G A;  2R2Z A;  3TSJ A;  3DQ0 A;  3TSH A;  2VFU A;  2VFR A;  2GQU A;  2WDW A;  2W54 A;  3FW7 A;  1DIQ A;  1E0Y A;  1MBB A;  1UXY A;  2BVF A;  3EUB 3;  3FWA A;  5HQX A;  5FXF A;  1AHU A;  4PWB A;  3W8X A;  3NVZ B;  5HMR A;  2Y3S A;  1FFU C;  1N62 C;  4PZF A;  2VFS A;  1FIQ B;  5D79 A;  1F0X A;  1E8F A;  3KJM A;  1QLT A;  3D2J A;  3EJD B;  4UD8 A;  4JAY A;  4EC3 A;  2IPI A;  5K8E A;  5AWV A;  3I99 A;  1T3Q C;  3W8Z A;  2RK5 A;  2GQT A;  2P3H A;  1DZN A;  3NVY B;  2UUV A;  3NRZ B;  1W1Q A;  3LLB A;  1N60 C;  1W1L A;  4PVK A;  4XLO A;  3S1C A;  1JRO A;  3BW7 A;  1N5W C;  3PM9 A;  3GSY A;  3EJE B;  3AM9 A;  2UUU A;  4BBY A;  2MBR A;  1W1M A;  1FO4 A;  2W55 A;  2QPM A;  2Y3R A;  5HHZ A;  2BVG A;  3C0P A;  5AE1 A;  1E8H A;  3POP A;  2Y08 A;  2E3T A;  4PYT A;  2P13 A;  1WVE A;  1HSK A;  1VDV A;  1AHV A;  1W1R A;  3HRD C;  2Q4W A;  5G5G B;  5I1W A;  3AMZ A;  4MLA A;  3FW9 A;  2P4P A;  5L6F A;  3RJ8 A;  3FW8 A;  2EXR A;  1W1S A;  4BC7 A;  4ML8 A;  4BCA A;  2QKN A;  4JB1 A;  1W1K A;  5FXE A;  3NVV B;  5G5H B;  1SB3 B;  2PLI A;  1FFV C;  5FXD A;  3HSU A;  3LAE A;  1AHZ A;  2AXR A;  1W1O A;  2BVH A;  1V97 A;  4PVE A;  2VFV A;  1WVF A;  3D2H A;  5AE2 A;  3D2D A;  1MBT A;  1N5X A;  1W1J A;  3W8W A;  2Y4G A;  3DED A;  3RJA A;  1DII A;  4BC9 A;  1N63 C;  2I0K A;  4O95 A;  2OAI A;  1ZR6 A;  4DNS A;  1WYG A;  2YVS A;  2VAO A;  1ZXI C;  1I19 A;  3S1E A;  4ZOH B;  1VAO A;  1N61 C;  5AE3 A;  2W3S A;  2NQW A;  3NS1 B;  3SR6 B;  4HG0 A;  1QLU A;  2Q85 A;  3AN1 A;  3ETR B;  3TX1 A;  3PQB A;  4PWC A;  5I1V A;  4OAL A;  1JRP A;  4PVH A;  3JS8 A;  3S1F A;  2W3R A;  2VFT A;  3VTE A;  3S1D A;  2R8D A; 
#chains in the Genus database with same CATH homology
 5L6G A;  3B9J B;  5ADZ A;  5FXP A;  3NVW B;  4PVJ A;  1RM6 B;  2O3G A;  2PLS A;  1E8G A;  2R2Z A;  3TSJ A;  3DQ0 A;  3TSH A;  2VFU A;  2VFR A;  2GQU A;  2WDW A;  2W54 A;  3FW7 A;  1DIQ A;  1E0Y A;  1MBB A;  1UXY A;  2BVF A;  3EUB 3;  3FWA A;  5HQX A;  5FXF A;  1AHU A;  4PWB A;  3W8X A;  3NVZ B;  5HMR A;  2Y3S A;  1FFU C;  1N62 C;  4PZF A;  2VFS A;  1FIQ B;  5D79 A;  1F0X A;  1E8F A;  3KJM A;  1QLT A;  3D2J A;  4UD8 A;  4JAY A;  4EC3 A;  2IPI A;  5K8E A;  5AWV A;  3I99 A;  1T3Q C;  3W8Z A;  2RK5 A;  2GQT A;  2P3H A;  1DZN A;  2UUV A;  3NVY B;  3NRZ B;  1W1Q A;  3LLB A;  1N60 C;  1W1L A;  4PVK A;  4XLO A;  3S1C A;  1JRO A;  3BW7 A;  1N5W C;  3PM9 A;  3GSY A;  3AM9 A;  2UUU A;  4BBY A;  2MBR A;  1W1M A;  1FO4 A;  2W55 A;  2QPM A;  2Y3R A;  5HHZ A;  2BVG A;  3C0P A;  5AE1 A;  1E8H A;  3POP A;  2Y08 A;  2E3T A;  4PYT A;  2P13 A;  1WVE A;  1HSK A;  1VDV A;  1AHV A;  1W1R A;  3HRD C;  2Q4W A;  5G5G B;  5I1W A;  3AMZ A;  4MLA A;  3FW9 A;  2P4P A;  5L6F A;  3RJ8 A;  3FW8 A;  2EXR A;  1W1S A;  4BC7 A;  4ML8 A;  4BCA A;  2QKN A;  4JB1 A;  1W1K A;  5FXE A;  3NVV B;  5G5H B;  1SB3 B;  2PLI A;  1FFV C;  5FXD A;  3HSU A;  3LAE A;  1AHZ A;  2AXR A;  1W1O A;  2BVH A;  1V97 A;  4PVE A;  2VFV A;  1WVF A;  3D2H A;  5AE2 A;  3D2D A;  1MBT A;  1N5X A;  1W1J A;  3W8W A;  2Y4G A;  3DED A;  3RJA A;  1DII A;  4BC9 A;  1N63 C;  2I0K A;  4O95 A;  2OAI A;  1ZR6 A;  4DNS A;  1WYG A;  2YVS A;  2VAO A;  1ZXI C;  1I19 A;  3S1E A;  4ZOH B;  1VAO A;  1N61 C;  5AE3 A;  2W3S A;  2NQW A;  3NS1 B;  3SR6 B;  4HG0 A;  1QLU A;  2Q85 A;  3AN1 A;  3ETR B;  3TX1 A;  3PQB A;  4PWC A;  5I1V A;  4OAL A;  1JRP A;  4PVH A;  3JS8 A;  3S1F A;  2W3R A;  2VFT A;  3VTE A;  3S1D A;  2R8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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